AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601950 MtrunA17_Chr4g0028991 97.541 122 3 0 1 122 1 122 1.68e-77 245
Msa0601950 MtrunA17_Chr2g0292391 90.385 104 10 0 19 122 4 107 9.39e-60 197
Msa0601950 MtrunA17_Chr2g0326731 80.165 121 19 2 3 122 1 117 1.68e-59 196
Msa0601950 MtrunA17_Chr2g0331131 88.889 99 11 0 24 122 10 108 1.64e-55 185
Msa0601950 MtrunA17_Chr3g0140351 86.869 99 13 0 24 122 16 114 4.62e-55 184
Msa0601950 MtrunA17_Chr8g0340411 86.408 103 13 1 21 122 7 109 5.02e-55 184
Msa0601950 MtrunA17_Chr2g0322731 34.167 120 65 3 12 128 87 195 2.83e-14 68.6
Msa0601950 MtrunA17_Chr4g0024351 36.634 101 56 2 28 128 63 155 5.58e-14 67.8
Msa0601950 MtrunA17_Chr5g0410711 34.234 111 65 2 28 138 92 194 1.60e-13 66.6
Msa0601950 MtrunA17_Chr6g0472471 36.000 100 56 2 29 128 73 164 2.89e-12 62.8
Msa0601950 MtrunA17_Chr6g0481041 35.644 101 57 2 28 128 32 124 2.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601950 AT5G60690.1 85.124 121 15 2 3 122 1 119 7.42e-62 203
Msa0601950 AT2G34710.1 91.346 104 9 0 19 122 16 119 8.55e-60 197
Msa0601950 AT1G30490.1 83.621 116 17 1 7 122 2 115 4.09e-59 196
Msa0601950 AT4G32880.1 86.916 107 13 1 17 122 3 109 8.08e-58 192
Msa0601950 AT1G52150.3 90.909 99 9 0 24 122 13 111 5.46e-57 189
Msa0601950 AT1G52150.2 90.909 99 9 0 24 122 13 111 1.12e-56 189
Msa0601950 AT1G52150.1 90.909 99 9 0 24 122 13 111 1.12e-56 189
Msa0601950 AT4G04890.2 37.624 101 55 2 28 128 65 157 6.96e-15 70.9
Msa0601950 AT4G04890.1 37.624 101 55 2 28 128 65 157 6.96e-15 70.9
Msa0601950 AT4G21750.2 37.624 101 55 2 28 128 65 157 2.18e-14 69.3
Msa0601950 AT4G21750.1 37.624 101 55 2 28 128 65 157 2.18e-14 69.3
Msa0601950 AT4G21750.3 37.624 101 55 2 28 128 65 157 2.18e-14 69.3
Msa0601950 AT4G21750.4 37.624 101 55 2 28 128 65 157 2.18e-14 69.3
Msa0601950 AT1G05230.12 36.634 101 56 2 28 128 67 159 9.93e-14 67.4
Msa0601950 AT1G05230.8 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.4 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.9 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.10 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.7 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.11 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.2 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.6 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.5 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.1 36.634 101 56 2 28 128 67 159 1.01e-13 67.4
Msa0601950 AT1G05230.3 36.634 101 56 2 28 128 67 159 1.06e-13 67.4
Msa0601950 AT5G17320.1 33.333 117 69 3 12 128 14 121 5.67e-13 65.5
Msa0601950 AT1G73360.1 36.634 101 56 2 28 128 35 127 1.51e-12 63.9
Msa0601950 AT2G32370.1 35.644 101 57 3 28 128 71 163 3.80e-12 62.8
Msa0601950 AT1G79840.5 35.514 107 57 3 28 131 104 201 1.14e-11 61.6
Msa0601950 AT1G79840.1 35.514 107 57 3 28 131 104 201 1.15e-11 61.6
Msa0601950 AT1G79840.4 35.514 107 57 3 28 131 104 201 1.19e-11 61.6
Msa0601950 AT1G79840.3 35.514 107 57 3 28 131 46 143 1.19e-11 61.6
Msa0601950 AT1G79840.6 35.514 107 57 3 28 131 46 143 1.19e-11 61.6
Msa0601950 AT3G03260.1 34.694 98 56 2 31 128 29 118 1.26e-11 61.2
Msa0601950 AT1G79840.2 35.514 107 57 3 28 131 133 230 1.48e-11 61.2
Msa0601950 AT3G03260.2 34.694 98 56 2 31 128 29 118 1.58e-11 61.2
Msa0601950 AT3G61150.1 34.259 108 49 4 28 128 113 205 4.92e-11 59.7

Find 58 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGAATATGACAAGTTTA+AGG 0.143295 4_2:-45135020 None:intergenic
CATCACCAACATGCTTATTA+AGG 0.209228 4_2:+45134577 Msa0601950:five_prime_UTR
AGTTTAAGGGAAAATGAAAA+TGG 0.259645 4_2:-45135006 None:intergenic
AGAAAATGAACAAGAAAGTT+TGG 0.295020 4_2:-45134968 None:intergenic
ATAGAATATGACAAGTTTAA+GGG 0.328788 4_2:-45135019 None:intergenic
CAGTATCAATCAAGAGAAAA+AGG 0.339257 4_2:-45134605 None:intergenic
CAAGATAAGTTTGAATGAAA+TGG 0.365439 4_2:-45134763 None:intergenic
ATTGATAAGCATCTAGATTC+AGG 0.380570 4_2:+45135193 Msa0601950:CDS
AACCAAACCTTGATCTGTTT+AGG 0.396617 4_2:-45135343 None:intergenic
CAAGGCTTCAAACTGTGAAT+AGG 0.399527 4_2:+45135506 Msa0601950:CDS
TAGATTCAGGGAAATATGTT+AGG 0.416438 4_2:+45135206 Msa0601950:CDS
TGTTGTCTTCTCATGGAACT+AGG 0.427476 4_2:-45135283 None:intergenic
AACCTAAACAGATCAAGGTT+TGG 0.433904 4_2:+45135341 Msa0601950:CDS
TTGAGGTTTGTGTGTTGTGT+GGG 0.446427 4_2:+45135106 Msa0601950:five_prime_UTR
AGTGAAGTTGTCTTTGTCCT+AGG 0.447473 4_2:-45134685 None:intergenic
AGCAAAGAAAAGAGGCTTCA+AGG 0.453264 4_2:+45135488 Msa0601950:CDS
GTTTAAGGGAAAATGAAAAT+GGG 0.454899 4_2:-45135005 None:intergenic
AATCAATTGTTGTCTTCTCA+TGG 0.455291 4_2:-45135290 None:intergenic
GGTTCAATGTTGGAAAGAAT+AGG 0.460052 4_2:-45135322 None:intergenic
AAGTCTCCTCCGCAATTGAT+AGG 0.463644 4_2:-45136205 None:intergenic
CATTGAACCTAAACAGATCA+AGG 0.465302 4_2:+45135336 Msa0601950:CDS
CTTCTCATGGAACTAGGCTT+AGG 0.473637 4_2:-45135277 None:intergenic
ACAAGACTATATTCCTTCCT+AGG 0.476603 4_2:+45134668 Msa0601950:five_prime_UTR
CTTAATAAGCATGTTGGTGA+TGG 0.477301 4_2:-45134576 None:intergenic
TGTTGATGGAGGAAAATGAT+AGG 0.483631 4_2:+45135551 Msa0601950:CDS
TACTGAACAAGTTGAAGCAT+TGG 0.483862 4_2:+45135234 Msa0601950:CDS
AAAGAAAGGAATGAAGAAGA+AGG 0.489195 4_2:-45134549 None:intergenic
GAAATGGAGCTTGAGTTAGA+AGG 0.492851 4_2:-45134747 None:intergenic
CATTACCTTGTGAACCAAGA+TGG 0.497411 4_2:-45134891 None:intergenic
TGCAATGAACAAGTTGTTGA+TGG 0.500516 4_2:+45135537 Msa0601950:CDS
CTTGAGGTTTGTGTGTTGTG+TGG 0.501065 4_2:+45135105 Msa0601950:five_prime_UTR
ACAAGTTGAAGCATTGGAAA+GGG 0.515957 4_2:+45135240 Msa0601950:CDS
GAGTTCCTTTCAAAGGCTAC+AGG 0.517677 4_2:+45136233 Msa0601950:CDS
GATCTGTTTAGGTTCAATGT+TGG 0.526382 4_2:-45135332 None:intergenic
ATAGAAAGTAGTAGTAGTGG+TGG 0.530086 4_2:+45135166 Msa0601950:CDS
CATGGCTATGGCTATGGCTG+TGG 0.534941 4_2:+45135135 Msa0601950:exon
CATCTTGGTTCACAAGGTAA+TGG 0.535554 4_2:+45134892 Msa0601950:five_prime_UTR
AAGAAACATGGCTATGGCTA+TGG 0.538767 4_2:+45135129 Msa0601950:exon
TGGAGCTTGAGTTAGAAGGA+AGG 0.539812 4_2:-45134743 None:intergenic
AATAAGCATGTTGGTGATGG+AGG 0.543677 4_2:-45134573 None:intergenic
TTTGACAGAGTTCCTTTCAA+AGG 0.544138 4_2:+45136226 Msa0601950:CDS
TTGATAAGCATCTAGATTCA+GGG 0.546019 4_2:+45135194 Msa0601950:CDS
CAGTTCCTGTAGCCTTTGAA+AGG 0.551448 4_2:-45136238 None:intergenic
AACAAGTTGAAGCATTGGAA+AGG 0.552407 4_2:+45135239 Msa0601950:CDS
AAGTTGTCTTTGTCCTAGGA+AGG 0.553870 4_2:-45134681 None:intergenic
AATGGAATCAATAAAAGAGA+AGG 0.560120 4_2:-45134828 None:intergenic
ATGGAATCAATAAAAGAGAA+GGG 0.560824 4_2:-45134827 None:intergenic
TAGAGAGAAGCAAAGAAAAG+AGG 0.587959 4_2:+45135480 Msa0601950:CDS
AGGTTTGGTTCCAAAATCGA+AGG 0.597184 4_2:+45135356 Msa0601950:CDS
TTGCAGACTCCTATCAATTG+CGG 0.602778 4_2:+45136196 Msa0601950:intron
CATATAGAAAGTAGTAGTAG+TGG 0.603914 4_2:+45135163 Msa0601950:CDS
AGCTCAGATATCAAGAAACA+TGG 0.621080 4_2:-45134489 None:intergenic
CAGACTCCTATCAATTGCGG+AGG 0.631681 4_2:+45136199 Msa0601950:intron
TGTGGGAAGAAACATGGCTA+TGG 0.633966 4_2:+45135123 Msa0601950:exon
TTGGTGATGGAGGAAAAGAA+AGG 0.634397 4_2:-45134563 None:intergenic
GAATCAATAAAAGAGAAGGG+TGG 0.666901 4_2:-45134824 None:intergenic
GTGTTGTGTGGGAAGAAACA+TGG 0.667868 4_2:+45135117 Msa0601950:exon
AATGAACAAGTTGTTGATGG+AGG 0.713928 4_2:+45135540 Msa0601950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGTTATATGTTTTAA+AGG - chr4_2:45134856-45134875 None:intergenic 10.0%
!!! TATATTGTTATATGTTTTAA+AGG - chr4_2:45134856-45134875 None:intergenic 10.0%
!!! TTATATGTTTTAAAGGTTAA+TGG - chr4_2:45134849-45134868 None:intergenic 15.0%
!!! TTAGTTTTGTTTTGTTTTTT+TGG + chr4_2:45135437-45135456 Msa0601950:intron 15.0%
!!! ATTGGTTTATAAAATTGATT+CGG - chr4_2:45135898-45135917 None:intergenic 15.0%
!!! AAATTTGATTTCAAATGAAT+TGG - chr4_2:45135916-45135935 None:intergenic 15.0%
!!! ATATTGATGGATATTATATT+TGG + chr4_2:45135982-45136001 Msa0601950:intron 15.0%
!!! TTATATGTTTTAAAGGTTAA+TGG - chr4_2:45134849-45134868 None:intergenic 15.0%
!!! TTAGTTTTGTTTTGTTTTTT+TGG + chr4_2:45135437-45135456 Msa0601950:intron 15.0%
!!! ATTGGTTTATAAAATTGATT+CGG - chr4_2:45135898-45135917 None:intergenic 15.0%
!!! AAATTTGATTTCAAATGAAT+TGG - chr4_2:45135916-45135935 None:intergenic 15.0%
!!! ATATTGATGGATATTATATT+TGG + chr4_2:45135982-45136001 Msa0601950:intron 15.0%
!! ATAGAATATGACAAGTTTAA+GGG - chr4_2:45135022-45135041 None:intergenic 20.0%
!! ATTGAATTCTAGCATTAAAT+TGG - chr4_2:45135757-45135776 None:intergenic 20.0%
!! AATATAGTAATCAATTGTAG+AGG - chr4_2:45135786-45135805 None:intergenic 20.0%
!!! TTGGTTTATAAAATTGATTC+GGG - chr4_2:45135897-45135916 None:intergenic 20.0%
!! TACACAATAGAAAAAGAATT+AGG - chr4_2:45136171-45136190 None:intergenic 20.0%
!! ATAGAATATGACAAGTTTAA+GGG - chr4_2:45135022-45135041 None:intergenic 20.0%
!! ATTGAATTCTAGCATTAAAT+TGG - chr4_2:45135757-45135776 None:intergenic 20.0%
!! AATATAGTAATCAATTGTAG+AGG - chr4_2:45135786-45135805 None:intergenic 20.0%
!!! TTGGTTTATAAAATTGATTC+GGG - chr4_2:45135897-45135916 None:intergenic 20.0%
!! TACACAATAGAAAAAGAATT+AGG - chr4_2:45136171-45136190 None:intergenic 20.0%
! AAAAACCTTAATAAGCATGT+TGG - chr4_2:45134585-45134604 None:intergenic 25.0%
! CAAGATAAGTTTGAATGAAA+TGG - chr4_2:45134766-45134785 None:intergenic 25.0%
! ATGGAATCAATAAAAGAGAA+GGG - chr4_2:45134830-45134849 None:intergenic 25.0%
! AATGGAATCAATAAAAGAGA+AGG - chr4_2:45134831-45134850 None:intergenic 25.0%
! AAAGTTGAAGTGAAAAAAGA+AGG + chr4_2:45134929-45134948 Msa0601950:five_prime_UTR 25.0%
! AGAAAATGAACAAGAAAGTT+TGG - chr4_2:45134971-45134990 None:intergenic 25.0%
! GTTTAAGGGAAAATGAAAAT+GGG - chr4_2:45135008-45135027 None:intergenic 25.0%
! AGTTTAAGGGAAAATGAAAA+TGG - chr4_2:45135009-45135028 None:intergenic 25.0%
! GATAGAATATGACAAGTTTA+AGG - chr4_2:45135023-45135042 None:intergenic 25.0%
! TCAAGAAAAATGAAAGTTCT+TGG - chr4_2:45135090-45135109 None:intergenic 25.0%
!!! AAGAACTTTCATTTTTCTTG+AGG + chr4_2:45135089-45135108 Msa0601950:five_prime_UTR 25.0%
! TTTATAAGTTTGAGCTTCAT+TGG + chr4_2:45135396-45135415 Msa0601950:intron 25.0%
!! TCATGTCATAATTCTACTTT+TGG + chr4_2:45135659-45135678 Msa0601950:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr4_2:45135709-45135728 Msa0601950:intron 25.0%
!!! CTTAGTGCATTTTTGTTTTT+TGG - chr4_2:45135945-45135964 None:intergenic 25.0%
! AACAAAAATGCACTAAGTTA+AGG + chr4_2:45135948-45135967 Msa0601950:intron 25.0%
!!! GATTTTTTTTTCTGTCTTGA+AGG + chr4_2:45136142-45136161 Msa0601950:intron 25.0%
! AAAAACCTTAATAAGCATGT+TGG - chr4_2:45134585-45134604 None:intergenic 25.0%
! CAAGATAAGTTTGAATGAAA+TGG - chr4_2:45134766-45134785 None:intergenic 25.0%
! ATGGAATCAATAAAAGAGAA+GGG - chr4_2:45134830-45134849 None:intergenic 25.0%
! AATGGAATCAATAAAAGAGA+AGG - chr4_2:45134831-45134850 None:intergenic 25.0%
! AAAGTTGAAGTGAAAAAAGA+AGG + chr4_2:45134929-45134948 Msa0601950:five_prime_UTR 25.0%
! AGAAAATGAACAAGAAAGTT+TGG - chr4_2:45134971-45134990 None:intergenic 25.0%
! GTTTAAGGGAAAATGAAAAT+GGG - chr4_2:45135008-45135027 None:intergenic 25.0%
! AGTTTAAGGGAAAATGAAAA+TGG - chr4_2:45135009-45135028 None:intergenic 25.0%
! GATAGAATATGACAAGTTTA+AGG - chr4_2:45135023-45135042 None:intergenic 25.0%
! TCAAGAAAAATGAAAGTTCT+TGG - chr4_2:45135090-45135109 None:intergenic 25.0%
!!! AAGAACTTTCATTTTTCTTG+AGG + chr4_2:45135089-45135108 Msa0601950:five_prime_UTR 25.0%
! TTTATAAGTTTGAGCTTCAT+TGG + chr4_2:45135396-45135415 Msa0601950:intron 25.0%
!! TCATGTCATAATTCTACTTT+TGG + chr4_2:45135659-45135678 Msa0601950:intron 25.0%
!!! AGAATTGATTTTGACATGTT+TGG + chr4_2:45135709-45135728 Msa0601950:intron 25.0%
!!! CTTAGTGCATTTTTGTTTTT+TGG - chr4_2:45135945-45135964 None:intergenic 25.0%
! AACAAAAATGCACTAAGTTA+AGG + chr4_2:45135948-45135967 Msa0601950:intron 25.0%
!!! GATTTTTTTTTCTGTCTTGA+AGG + chr4_2:45136142-45136161 Msa0601950:intron 25.0%
AAAGAAAGGAATGAAGAAGA+AGG - chr4_2:45134552-45134571 None:intergenic 30.0%
CAGTATCAATCAAGAGAAAA+AGG - chr4_2:45134608-45134627 None:intergenic 30.0%
!!! TGTCTTTGTTGCTGTTTTTT+TGG - chr4_2:45134651-45134670 None:intergenic 30.0%
GAAGAAGAAAAAAACCATCT+TGG + chr4_2:45134877-45134896 Msa0601950:five_prime_UTR 30.0%
CATATAGAAAGTAGTAGTAG+TGG + chr4_2:45135163-45135182 Msa0601950:CDS 30.0%
ATTGATAAGCATCTAGATTC+AGG + chr4_2:45135193-45135212 Msa0601950:CDS 30.0%
TTGATAAGCATCTAGATTCA+GGG + chr4_2:45135194-45135213 Msa0601950:CDS 30.0%
TAGATTCAGGGAAATATGTT+AGG + chr4_2:45135206-45135225 Msa0601950:CDS 30.0%
AATCAATTGTTGTCTTCTCA+TGG - chr4_2:45135293-45135312 None:intergenic 30.0%
! GTTTTCAATACCTTCGATTT+TGG - chr4_2:45135369-45135388 None:intergenic 30.0%
!! ATCGAAGGTATTGAAAACTT+TGG + chr4_2:45135371-45135390 Msa0601950:intron 30.0%
!!! TTTGGTGTTTAATGTTTTGC+AGG + chr4_2:45135455-45135474 Msa0601950:intron 30.0%
!! TGTCATAATTCTACTTTTGG+AGG + chr4_2:45135662-45135681 Msa0601950:intron 30.0%
AGTAATCAATTGTAGAGGAA+AGG - chr4_2:45135781-45135800 None:intergenic 30.0%
TCAATTCACTTTGACATGAA+CGG + chr4_2:45135823-45135842 Msa0601950:intron 30.0%
ATCCATCAATATCAATTCCA+AGG - chr4_2:45135974-45135993 None:intergenic 30.0%
AAAGAAAGGAATGAAGAAGA+AGG - chr4_2:45134552-45134571 None:intergenic 30.0%
CAGTATCAATCAAGAGAAAA+AGG - chr4_2:45134608-45134627 None:intergenic 30.0%
!!! TGTCTTTGTTGCTGTTTTTT+TGG - chr4_2:45134651-45134670 None:intergenic 30.0%
GAAGAAGAAAAAAACCATCT+TGG + chr4_2:45134877-45134896 Msa0601950:five_prime_UTR 30.0%
CATATAGAAAGTAGTAGTAG+TGG + chr4_2:45135163-45135182 Msa0601950:CDS 30.0%
ATTGATAAGCATCTAGATTC+AGG + chr4_2:45135193-45135212 Msa0601950:CDS 30.0%
TTGATAAGCATCTAGATTCA+GGG + chr4_2:45135194-45135213 Msa0601950:CDS 30.0%
TAGATTCAGGGAAATATGTT+AGG + chr4_2:45135206-45135225 Msa0601950:CDS 30.0%
AATCAATTGTTGTCTTCTCA+TGG - chr4_2:45135293-45135312 None:intergenic 30.0%
! GTTTTCAATACCTTCGATTT+TGG - chr4_2:45135369-45135388 None:intergenic 30.0%
!! ATCGAAGGTATTGAAAACTT+TGG + chr4_2:45135371-45135390 Msa0601950:intron 30.0%
!!! TTTGGTGTTTAATGTTTTGC+AGG + chr4_2:45135455-45135474 Msa0601950:intron 30.0%
!! TGTCATAATTCTACTTTTGG+AGG + chr4_2:45135662-45135681 Msa0601950:intron 30.0%
AGTAATCAATTGTAGAGGAA+AGG - chr4_2:45135781-45135800 None:intergenic 30.0%
TCAATTCACTTTGACATGAA+CGG + chr4_2:45135823-45135842 Msa0601950:intron 30.0%
ATCCATCAATATCAATTCCA+AGG - chr4_2:45135974-45135993 None:intergenic 30.0%
AGCTCAGATATCAAGAAACA+TGG - chr4_2:45134492-45134511 None:intergenic 35.0%
! CTTAATAAGCATGTTGGTGA+TGG - chr4_2:45134579-45134598 None:intergenic 35.0%
CATCACCAACATGCTTATTA+AGG + chr4_2:45134577-45134596 Msa0601950:five_prime_UTR 35.0%
ACAAGACTATATTCCTTCCT+AGG + chr4_2:45134668-45134687 Msa0601950:five_prime_UTR 35.0%
GAATCAATAAAAGAGAAGGG+TGG - chr4_2:45134827-45134846 None:intergenic 35.0%
AAAAACCATCTTGGTTCACA+AGG + chr4_2:45134886-45134905 Msa0601950:five_prime_UTR 35.0%
ATAGAAAGTAGTAGTAGTGG+TGG + chr4_2:45135166-45135185 Msa0601950:CDS 35.0%
! TACTGAACAAGTTGAAGCAT+TGG + chr4_2:45135234-45135253 Msa0601950:CDS 35.0%
!! AACAAGTTGAAGCATTGGAA+AGG + chr4_2:45135239-45135258 Msa0601950:CDS 35.0%
!! ACAAGTTGAAGCATTGGAAA+GGG + chr4_2:45135240-45135259 Msa0601950:CDS 35.0%
GGTTCAATGTTGGAAAGAAT+AGG - chr4_2:45135325-45135344 None:intergenic 35.0%
! GATCTGTTTAGGTTCAATGT+TGG - chr4_2:45135335-45135354 None:intergenic 35.0%
CATTGAACCTAAACAGATCA+AGG + chr4_2:45135336-45135355 Msa0601950:CDS 35.0%
AACCTAAACAGATCAAGGTT+TGG + chr4_2:45135341-45135360 Msa0601950:CDS 35.0%
AACCAAACCTTGATCTGTTT+AGG - chr4_2:45135346-45135365 None:intergenic 35.0%
TAGAGAGAAGCAAAGAAAAG+AGG + chr4_2:45135480-45135499 Msa0601950:CDS 35.0%
TGCAATGAACAAGTTGTTGA+TGG + chr4_2:45135537-45135556 Msa0601950:CDS 35.0%
! AATGAACAAGTTGTTGATGG+AGG + chr4_2:45135540-45135559 Msa0601950:CDS 35.0%
! TGTTGATGGAGGAAAATGAT+AGG + chr4_2:45135551-45135570 Msa0601950:CDS 35.0%
! TGTGTGAGAATGGATTTATG+AGG + chr4_2:45135599-45135618 Msa0601950:intron 35.0%
TTGCATACTGTAAGTGTATG+AGG + chr4_2:45135628-45135647 Msa0601950:intron 35.0%
!! CATAATTCTACTTTTGGAGG+AGG + chr4_2:45135665-45135684 Msa0601950:intron 35.0%
TACTGATGCAAGTTGTGATT+CGG + chr4_2:45136037-45136056 Msa0601950:intron 35.0%
TTTGACAGAGTTCCTTTCAA+AGG + chr4_2:45136226-45136245 Msa0601950:CDS 35.0%
AGCTCAGATATCAAGAAACA+TGG - chr4_2:45134492-45134511 None:intergenic 35.0%
! CTTAATAAGCATGTTGGTGA+TGG - chr4_2:45134579-45134598 None:intergenic 35.0%
CATCACCAACATGCTTATTA+AGG + chr4_2:45134577-45134596 Msa0601950:five_prime_UTR 35.0%
ACAAGACTATATTCCTTCCT+AGG + chr4_2:45134668-45134687 Msa0601950:five_prime_UTR 35.0%
GAATCAATAAAAGAGAAGGG+TGG - chr4_2:45134827-45134846 None:intergenic 35.0%
AAAAACCATCTTGGTTCACA+AGG + chr4_2:45134886-45134905 Msa0601950:five_prime_UTR 35.0%
ATAGAAAGTAGTAGTAGTGG+TGG + chr4_2:45135166-45135185 Msa0601950:CDS 35.0%
! TACTGAACAAGTTGAAGCAT+TGG + chr4_2:45135234-45135253 Msa0601950:CDS 35.0%
!! AACAAGTTGAAGCATTGGAA+AGG + chr4_2:45135239-45135258 Msa0601950:CDS 35.0%
!! ACAAGTTGAAGCATTGGAAA+GGG + chr4_2:45135240-45135259 Msa0601950:CDS 35.0%
GGTTCAATGTTGGAAAGAAT+AGG - chr4_2:45135325-45135344 None:intergenic 35.0%
! GATCTGTTTAGGTTCAATGT+TGG - chr4_2:45135335-45135354 None:intergenic 35.0%
CATTGAACCTAAACAGATCA+AGG + chr4_2:45135336-45135355 Msa0601950:CDS 35.0%
AACCTAAACAGATCAAGGTT+TGG + chr4_2:45135341-45135360 Msa0601950:CDS 35.0%
AACCAAACCTTGATCTGTTT+AGG - chr4_2:45135346-45135365 None:intergenic 35.0%
TAGAGAGAAGCAAAGAAAAG+AGG + chr4_2:45135480-45135499 Msa0601950:CDS 35.0%
TGCAATGAACAAGTTGTTGA+TGG + chr4_2:45135537-45135556 Msa0601950:CDS 35.0%
! AATGAACAAGTTGTTGATGG+AGG + chr4_2:45135540-45135559 Msa0601950:CDS 35.0%
! TGTTGATGGAGGAAAATGAT+AGG + chr4_2:45135551-45135570 Msa0601950:CDS 35.0%
! TGTGTGAGAATGGATTTATG+AGG + chr4_2:45135599-45135618 Msa0601950:intron 35.0%
TTGCATACTGTAAGTGTATG+AGG + chr4_2:45135628-45135647 Msa0601950:intron 35.0%
!! CATAATTCTACTTTTGGAGG+AGG + chr4_2:45135665-45135684 Msa0601950:intron 35.0%
TACTGATGCAAGTTGTGATT+CGG + chr4_2:45136037-45136056 Msa0601950:intron 35.0%
TTTGACAGAGTTCCTTTCAA+AGG + chr4_2:45136226-45136245 Msa0601950:CDS 35.0%
!! TTGGTGATGGAGGAAAAGAA+AGG - chr4_2:45134566-45134585 None:intergenic 40.0%
!! AATAAGCATGTTGGTGATGG+AGG - chr4_2:45134576-45134595 None:intergenic 40.0%
AAGTTGTCTTTGTCCTAGGA+AGG - chr4_2:45134684-45134703 None:intergenic 40.0%
AGTGAAGTTGTCTTTGTCCT+AGG - chr4_2:45134688-45134707 None:intergenic 40.0%
GAAATGGAGCTTGAGTTAGA+AGG - chr4_2:45134750-45134769 None:intergenic 40.0%
CATTACCTTGTGAACCAAGA+TGG - chr4_2:45134894-45134913 None:intergenic 40.0%
CATCTTGGTTCACAAGGTAA+TGG + chr4_2:45134892-45134911 Msa0601950:five_prime_UTR 40.0%
TTGAGGTTTGTGTGTTGTGT+GGG + chr4_2:45135106-45135125 Msa0601950:five_prime_UTR 40.0%
AAGAAACATGGCTATGGCTA+TGG + chr4_2:45135129-45135148 Msa0601950:exon 40.0%
TGTTGTCTTCTCATGGAACT+AGG - chr4_2:45135286-45135305 None:intergenic 40.0%
! AGGTTTGGTTCCAAAATCGA+AGG + chr4_2:45135356-45135375 Msa0601950:CDS 40.0%
AGCAAAGAAAAGAGGCTTCA+AGG + chr4_2:45135488-45135507 Msa0601950:CDS 40.0%
CAAGGCTTCAAACTGTGAAT+AGG + chr4_2:45135506-45135525 Msa0601950:CDS 40.0%
!! AATTCTACTTTTGGAGGAGG+CGG + chr4_2:45135668-45135687 Msa0601950:intron 40.0%
AATGCACTAAGTTAAGGCCT+TGG + chr4_2:45135954-45135973 Msa0601950:intron 40.0%
GGCCTTGGAATTGATATTGA+TGG + chr4_2:45135969-45135988 Msa0601950:intron 40.0%
GCATCTCTCTTAGAATTCTG+AGG - chr4_2:45136074-45136093 None:intergenic 40.0%
! AACCCTGCTGGGTAATTTTT+AGG + chr4_2:45136098-45136117 Msa0601950:intron 40.0%
AGCCTAAAAATTACCCAGCA+GGG - chr4_2:45136103-45136122 None:intergenic 40.0%
AAGCCTAAAAATTACCCAGC+AGG - chr4_2:45136104-45136123 None:intergenic 40.0%
TTGCAGACTCCTATCAATTG+CGG + chr4_2:45136196-45136215 Msa0601950:intron 40.0%
!! TTGGTGATGGAGGAAAAGAA+AGG - chr4_2:45134566-45134585 None:intergenic 40.0%
!! AATAAGCATGTTGGTGATGG+AGG - chr4_2:45134576-45134595 None:intergenic 40.0%
AAGTTGTCTTTGTCCTAGGA+AGG - chr4_2:45134684-45134703 None:intergenic 40.0%
AGTGAAGTTGTCTTTGTCCT+AGG - chr4_2:45134688-45134707 None:intergenic 40.0%
GAAATGGAGCTTGAGTTAGA+AGG - chr4_2:45134750-45134769 None:intergenic 40.0%
CATTACCTTGTGAACCAAGA+TGG - chr4_2:45134894-45134913 None:intergenic 40.0%
CATCTTGGTTCACAAGGTAA+TGG + chr4_2:45134892-45134911 Msa0601950:five_prime_UTR 40.0%
TTGAGGTTTGTGTGTTGTGT+GGG + chr4_2:45135106-45135125 Msa0601950:five_prime_UTR 40.0%
AAGAAACATGGCTATGGCTA+TGG + chr4_2:45135129-45135148 Msa0601950:exon 40.0%
TGTTGTCTTCTCATGGAACT+AGG - chr4_2:45135286-45135305 None:intergenic 40.0%
! AGGTTTGGTTCCAAAATCGA+AGG + chr4_2:45135356-45135375 Msa0601950:CDS 40.0%
AGCAAAGAAAAGAGGCTTCA+AGG + chr4_2:45135488-45135507 Msa0601950:CDS 40.0%
CAAGGCTTCAAACTGTGAAT+AGG + chr4_2:45135506-45135525 Msa0601950:CDS 40.0%
!! AATTCTACTTTTGGAGGAGG+CGG + chr4_2:45135668-45135687 Msa0601950:intron 40.0%
AATGCACTAAGTTAAGGCCT+TGG + chr4_2:45135954-45135973 Msa0601950:intron 40.0%
GGCCTTGGAATTGATATTGA+TGG + chr4_2:45135969-45135988 Msa0601950:intron 40.0%
GCATCTCTCTTAGAATTCTG+AGG - chr4_2:45136074-45136093 None:intergenic 40.0%
! AACCCTGCTGGGTAATTTTT+AGG + chr4_2:45136098-45136117 Msa0601950:intron 40.0%
AGCCTAAAAATTACCCAGCA+GGG - chr4_2:45136103-45136122 None:intergenic 40.0%
AAGCCTAAAAATTACCCAGC+AGG - chr4_2:45136104-45136123 None:intergenic 40.0%
TTGCAGACTCCTATCAATTG+CGG + chr4_2:45136196-45136215 Msa0601950:intron 40.0%
TGGAGCTTGAGTTAGAAGGA+AGG - chr4_2:45134746-45134765 None:intergenic 45.0%
CTTGAGGTTTGTGTGTTGTG+TGG + chr4_2:45135105-45135124 Msa0601950:five_prime_UTR 45.0%
GTGTTGTGTGGGAAGAAACA+TGG + chr4_2:45135117-45135136 Msa0601950:exon 45.0%
TGTGGGAAGAAACATGGCTA+TGG + chr4_2:45135123-45135142 Msa0601950:exon 45.0%
CTTCTCATGGAACTAGGCTT+AGG - chr4_2:45135280-45135299 None:intergenic 45.0%
TCACAGCTTGTGTGTGAGAA+TGG + chr4_2:45135589-45135608 Msa0601950:intron 45.0%
! GCATCAGTATTTGCTGCTGA+TGG - chr4_2:45136026-45136045 None:intergenic 45.0%
AAGTCTCCTCCGCAATTGAT+AGG - chr4_2:45136208-45136227 None:intergenic 45.0%
GAGTTCCTTTCAAAGGCTAC+AGG + chr4_2:45136233-45136252 Msa0601950:CDS 45.0%
CAGTTCCTGTAGCCTTTGAA+AGG - chr4_2:45136241-45136260 None:intergenic 45.0%
TGGAGCTTGAGTTAGAAGGA+AGG - chr4_2:45134746-45134765 None:intergenic 45.0%
CTTGAGGTTTGTGTGTTGTG+TGG + chr4_2:45135105-45135124 Msa0601950:five_prime_UTR 45.0%
GTGTTGTGTGGGAAGAAACA+TGG + chr4_2:45135117-45135136 Msa0601950:exon 45.0%
TGTGGGAAGAAACATGGCTA+TGG + chr4_2:45135123-45135142 Msa0601950:exon 45.0%
CTTCTCATGGAACTAGGCTT+AGG - chr4_2:45135280-45135299 None:intergenic 45.0%
TCACAGCTTGTGTGTGAGAA+TGG + chr4_2:45135589-45135608 Msa0601950:intron 45.0%
! GCATCAGTATTTGCTGCTGA+TGG - chr4_2:45136026-45136045 None:intergenic 45.0%
AAGTCTCCTCCGCAATTGAT+AGG - chr4_2:45136208-45136227 None:intergenic 45.0%
GAGTTCCTTTCAAAGGCTAC+AGG + chr4_2:45136233-45136252 Msa0601950:CDS 45.0%
CAGTTCCTGTAGCCTTTGAA+AGG - chr4_2:45136241-45136260 None:intergenic 45.0%
AGAGATGCTACTAACCCTGC+TGG + chr4_2:45136086-45136105 Msa0601950:intron 50.0%
GAGATGCTACTAACCCTGCT+GGG + chr4_2:45136087-45136106 Msa0601950:intron 50.0%
CAGACTCCTATCAATTGCGG+AGG + chr4_2:45136199-45136218 Msa0601950:intron 50.0%
AGAGATGCTACTAACCCTGC+TGG + chr4_2:45136086-45136105 Msa0601950:intron 50.0%
GAGATGCTACTAACCCTGCT+GGG + chr4_2:45136087-45136106 Msa0601950:intron 50.0%
CAGACTCCTATCAATTGCGG+AGG + chr4_2:45136199-45136218 Msa0601950:intron 50.0%
CATGGCTATGGCTATGGCTG+TGG + chr4_2:45135135-45135154 Msa0601950:exon 55.0%
CATGGCTATGGCTATGGCTG+TGG + chr4_2:45135135-45135154 Msa0601950:exon 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 45134440 45136267 45134440 ID=Msa0601950;Name=Msa0601950
chr4_2 mRNA 45134440 45136267 45134440 ID=Msa0601950-mRNA-1;Parent=Msa0601950;Name=Msa0601950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=696|0.5|0.33|0.66|1|1|3|0|142
chr4_2 exon 45134440 45135377 45134440 ID=Msa0601950-mRNA-1:exon:10045;Parent=Msa0601950-mRNA-1
chr4_2 exon 45135477 45135597 45135477 ID=Msa0601950-mRNA-1:exon:10046;Parent=Msa0601950-mRNA-1
chr4_2 exon 45136202 45136267 45136202 ID=Msa0601950-mRNA-1:exon:10047;Parent=Msa0601950-mRNA-1
chr4_2 five_prime_UTR 45134440 45135135 45134440 ID=Msa0601950-mRNA-1:five_prime_utr;Parent=Msa0601950-mRNA-1
chr4_2 CDS 45135136 45135377 45135136 ID=Msa0601950-mRNA-1:cds;Parent=Msa0601950-mRNA-1
chr4_2 CDS 45135477 45135597 45135477 ID=Msa0601950-mRNA-1:cds;Parent=Msa0601950-mRNA-1
chr4_2 CDS 45136202 45136267 45136202 ID=Msa0601950-mRNA-1:cds;Parent=Msa0601950-mRNA-1
Gene Sequence

>Msa0601950

ATGGCTATGGCTATGGCTGTGGCTCATCATATAGAAAGTAGTAGTAGTGGTGGAAGCATTGATAAGCATCTAGATTCAGGGAAATATGTTAGGTACACTACTGAACAAGTTGAAGCATTGGAAAGGGTTTATGCTGAGTGTCCTAAGCCTAGTTCCATGAGAAGACAACAATTGATTCGTGAGTGTCCTATTCTTTCCAACATTGAACCTAAACAGATCAAGGTTTGGTTCCAAAATCGAAGGTGTAGAGAGAAGCAAAGAAAAGAGGCTTCAAGGCTTCAAACTGTGAATAGGAAATTGTCTGCAATGAACAAGTTGTTGATGGAGGAAAATGATAGGTTGCAGAAACAAGTGTCACAGCTTACTCCTATCAATTGCGGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGA

Protein sequence

>Msa0601950

MAMAMAVAHHIESSSSGGSIDKHLDSGKYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSQLTPINCGGDFDRVPFKGYRNCC*