AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0225100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225100 MtrunA17_Chr2g0331411 95.107 327 14 2 1 326 1 326 0.0 638
Msa0225100 MtrunA17_Chr8g0390281 54.438 338 97 12 1 326 1 293 5.45e-104 306
Msa0225100 MtrunA17_Chr5g0411501 49.721 358 110 10 1 326 16 335 6.96e-104 307
Msa0225100 MtrunA17_Chr8g0366881 50.737 339 120 9 6 326 39 348 7.00e-102 303
Msa0225100 MtrunA17_Chr6g0486121 53.398 309 78 9 20 326 10 254 8.23e-92 274
Msa0225100 MtrunA17_Chr5g0428141 49.425 348 124 12 2 326 29 347 4.22e-90 273
Msa0225100 MtrunA17_Chr1g0190711 44.156 308 101 8 23 326 13 253 1.69e-65 206
Msa0225100 MtrunA17_Chr1g0184791 64.024 164 53 3 167 326 84 245 1.71e-65 206
Msa0225100 MtrunA17_Chr7g0260641 62.733 161 55 3 167 326 94 250 1.51e-64 204
Msa0225100 MtrunA17_Chr1g0187921 62.112 161 58 2 167 326 78 236 1.71e-63 201
Msa0225100 MtrunA17_Chr1g0166011 49.741 193 64 6 128 314 17 182 5.35e-51 167
Msa0225100 MtrunA17_Chr1g0184801 44.053 227 101 5 90 315 1 202 4.09e-50 165
Msa0225100 MtrunA17_Chr7g0260621 49.143 175 63 4 143 315 52 202 4.63e-47 157
Msa0225100 MtrunA17_Chr1g0187961 54.362 149 41 5 166 314 57 178 8.43e-46 153
Msa0225100 MtrunA17_Chr1g0183251 44.149 188 71 6 171 325 81 267 4.04e-36 131
Msa0225100 MtrunA17_Chr4g0004181 49.669 151 44 5 170 318 52 172 5.35e-32 117
Msa0225100 MtrunA17_Chr2g0330951 40.113 177 86 4 154 310 78 254 1.93e-31 119
Msa0225100 MtrunA17_Chr2g0332141 48.000 125 52 4 206 326 6 121 1.14e-30 112
Msa0225100 MtrunA17_Chr8g0340731 41.401 157 77 3 169 310 104 260 2.77e-29 113
Msa0225100 MtrunA17_Chr4g0069561 34.899 149 64 7 166 308 60 181 1.42e-17 79.3
Msa0225100 MtrunA17_Chr3g0137601 30.323 155 77 6 163 310 79 209 1.02e-16 77.8
Msa0225100 MtrunA17_Chr7g0270851 39.423 104 49 3 204 307 66 155 2.94e-15 72.4
Msa0225100 MtrunA17_Chr1g0193861 39.216 102 48 2 206 307 83 170 3.22e-15 72.8
Msa0225100 MtrunA17_Chr1g0209181 30.137 146 80 4 163 307 44 168 5.84e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0225100 AT4G29080.1 53.043 345 101 12 1 326 3 305 5.12e-101 300
Msa0225100 AT2G22670.3 49.547 331 123 7 6 325 21 318 4.28e-98 293
Msa0225100 AT2G22670.1 49.547 331 123 7 6 325 21 318 4.28e-98 293
Msa0225100 AT2G22670.4 49.547 331 123 7 6 325 38 335 7.03e-98 293
Msa0225100 AT2G22670.5 48.943 331 123 8 6 325 21 316 8.69e-95 284
Msa0225100 AT2G22670.2 48.943 331 123 8 6 325 21 316 8.69e-95 284
Msa0225100 AT5G65670.2 48.193 332 127 9 6 323 33 333 3.74e-90 273
Msa0225100 AT5G65670.1 47.904 334 127 10 6 323 33 335 2.26e-88 268
Msa0225100 AT4G14550.1 42.951 305 94 6 25 326 1 228 3.11e-68 213
Msa0225100 AT3G04730.1 50.877 228 90 4 115 326 15 236 5.84e-66 207
Msa0225100 AT4G14550.2 42.662 293 88 6 25 314 1 216 2.40e-63 201
Msa0225100 AT3G23050.1 41.311 305 98 7 25 321 6 237 6.73e-61 195
Msa0225100 AT1G04250.1 51.232 203 86 5 127 325 35 228 2.30e-58 188
Msa0225100 AT4G14550.3 39.706 272 84 6 25 293 1 195 4.72e-50 165
Msa0225100 AT1G04240.1 56.000 150 45 4 166 315 58 186 4.37e-48 160
Msa0225100 AT5G43700.1 51.136 176 60 6 140 315 33 182 1.67e-47 158
Msa0225100 AT1G04240.2 56.000 150 45 4 165 314 157 285 2.82e-47 161
Msa0225100 AT3G23030.1 49.162 179 56 5 139 314 24 170 1.26e-44 150
Msa0225100 AT3G23030.2 49.162 179 56 5 139 314 111 257 6.44e-44 152
Msa0225100 AT3G23050.2 37.545 277 92 7 25 293 6 209 2.75e-43 148
Msa0225100 AT4G14560.1 54.545 154 40 3 158 311 41 164 1.27e-40 140
Msa0225100 AT1G52830.1 44.785 163 62 4 152 314 50 184 4.22e-40 139
Msa0225100 AT3G15540.1 49.390 164 56 6 159 319 56 195 6.70e-39 136
Msa0225100 AT4G28640.1 44.571 175 77 5 157 315 72 242 5.29e-36 130
Msa0225100 AT4G28640.3 44.509 173 76 5 157 313 72 240 8.12e-36 130
Msa0225100 AT4G28640.2 44.509 173 76 5 157 313 72 240 5.71e-35 129
Msa0225100 AT2G33310.2 39.894 188 88 2 149 317 53 234 6.53e-35 127
Msa0225100 AT2G33310.3 42.286 175 75 3 163 317 65 233 1.01e-34 127
Msa0225100 AT2G33310.1 42.286 175 75 3 163 317 65 233 1.01e-34 127
Msa0225100 AT1G15580.1 46.528 144 44 3 167 309 48 159 2.96e-34 123
Msa0225100 AT1G04550.2 39.683 189 83 3 160 326 57 236 8.68e-34 124
Msa0225100 AT3G16500.1 37.198 207 104 5 126 310 50 252 1.04e-31 120
Msa0225100 AT3G16500.2 37.198 207 104 5 126 310 50 252 1.16e-31 119
Msa0225100 AT4G14550.4 35.841 226 67 5 25 247 1 151 3.15e-29 110
Msa0225100 AT5G25890.1 41.060 151 66 4 171 321 47 174 4.34e-29 110
Msa0225100 AT1G51950.1 38.012 171 82 3 160 310 84 250 4.16e-28 110
Msa0225100 AT1G04100.1 38.922 167 74 4 174 314 95 259 5.89e-28 109
Msa0225100 AT3G23050.3 32.900 231 76 6 25 247 6 165 4.57e-24 97.1
Msa0225100 AT3G17600.1 37.241 145 63 6 164 307 37 154 5.29e-21 88.6
Msa0225100 AT3G62100.1 42.574 101 43 2 207 307 83 168 2.79e-18 81.3
Msa0225100 AT2G46990.1 41.584 101 44 2 207 307 85 170 8.63e-18 80.1
Msa0225100 AT4G32280.2 35.644 101 45 2 207 307 118 198 2.17e-14 71.6
Msa0225100 AT4G32280.1 28.571 168 69 4 171 307 93 240 3.36e-14 71.6
Msa0225100 AT3G62100.2 41.379 87 36 2 207 293 83 154 1.61e-13 67.8
Msa0225100 AT2G46990.2 41.379 87 36 2 207 293 85 156 1.96e-13 67.4
Msa0225100 AT1G15050.2 36.190 105 51 1 208 312 62 150 7.72e-12 63.2
Msa0225100 AT1G15050.1 36.190 105 51 1 208 312 94 182 1.39e-11 63.2
Msa0225100 AT2G01200.2 34.127 126 63 2 187 312 83 188 1.92e-11 62.8
Msa0225100 AT2G01200.1 34.127 126 63 2 187 312 83 188 1.92e-11 62.8

Find 93 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGGAAGTTTGAGTTTA+TGG 0.105721 2_1:-75112051 Msa0225100:three_prime_UTR
TGCAATTCTCCTGGACTTCC+TGG 0.219552 2_1:-75112863 Msa0225100:CDS
TTTGAACAATTTATGTAGTT+TGG 0.243085 2_1:-75111826 Msa0225100:three_prime_UTR
AATGTTCAAAAGAACCTTCT+TGG 0.276149 2_1:+75114465 None:intergenic
TGCTTGTAGGTGATGTTCCT+TGG 0.297899 2_1:-75112751 Msa0225100:CDS
GATGCCATTGATGAGTCTTC+TGG 0.307952 2_1:-75114016 Msa0225100:CDS
GAAAAGAATAAACAGGTTAA+TGG 0.313899 2_1:-75113824 Msa0225100:CDS
TATCAGTGAATTCTCCTCTT+TGG 0.315505 2_1:+75112090 None:intergenic
CTGTAATAGGGCACAGGTTG+TGG 0.328430 2_1:-75113369 Msa0225100:intron
GCTTGTAGGTGATGTTCCTT+GGG 0.334696 2_1:-75112750 Msa0225100:CDS
CAAGACCTACAACAACTATA+TGG 0.360524 2_1:-75113198 Msa0225100:CDS
TCACTGATATGCATATATAA+AGG 0.364308 2_1:-75112076 Msa0225100:three_prime_UTR
ATGAAAGGCTCCGAGGCAAT+TGG 0.372758 2_1:-75112447 Msa0225100:CDS
AATGTTCTTCAAATCCTTGT+TGG 0.373464 2_1:+75114102 None:intergenic
TCTTTGAGGGATCTTCTTCA+TGG 0.378941 2_1:-75112818 Msa0225100:CDS
CCTATGTAATCATGTTCTAA+TGG 0.385937 2_1:+75114268 None:intergenic
ATCTTCTTCTCTCAACTTCA+AGG 0.387877 2_1:-75114215 Msa0225100:CDS
TTTAGTTAGTAGAATTCATC+TGG 0.388369 2_1:-75111959 Msa0225100:three_prime_UTR
TTGTGCACCTTTGAAGTTTG+TGG 0.392548 2_1:-75111889 Msa0225100:three_prime_UTR
TCTCTATGTAAAAGTCAGTA+TGG 0.396729 2_1:-75113252 Msa0225100:CDS
AAGTTCCATATAGTTGTTGT+AGG 0.402215 2_1:+75113193 None:intergenic
ATGTTCAAAAGAACCTTCTT+GGG 0.409898 2_1:+75114466 None:intergenic
TTGATGAGTCTTCTGGGAAA+TGG 0.428366 2_1:-75114009 Msa0225100:CDS
AGATCAACCTTTCTGAGATA+AGG 0.437164 2_1:+75113221 None:intergenic
TTTCCAACATTCCCTCCTCT+TGG 0.438896 2_1:+75113941 None:intergenic
ATGAAGATAAAGATGGAGAT+TGG 0.439416 2_1:-75112775 Msa0225100:CDS
CCTGGACTTCCTGGGAAAGA+TGG 0.446287 2_1:-75112854 Msa0225100:CDS
AAATATGTGTATATATTCTC+TGG 0.453827 2_1:+75111928 None:intergenic
ATGCCATTGATGAGTCTTCT+GGG 0.457749 2_1:-75114015 Msa0225100:CDS
TTTGTGGCTGTATAAAAGAA+TGG 0.458305 2_1:-75111873 Msa0225100:three_prime_UTR
TGTACATGAAAAGAATAAAC+AGG 0.460606 2_1:-75113831 Msa0225100:CDS
TGTAATAGGGCACAGGTTGT+GGG 0.465911 2_1:-75113368 Msa0225100:intron
GACTAAGTGAGAGCTCTTTG+AGG 0.466933 2_1:-75112832 Msa0225100:CDS
TCAGGTCAATGCAATTCTCC+TGG 0.470704 2_1:-75112872 Msa0225100:intron
CAAGAGCCATGGGAAAATCT+AGG 0.474403 2_1:-75112144 Msa0225100:CDS
CCATCTTTCCCAGGAAGTCC+AGG 0.476059 2_1:+75112854 None:intergenic
AAGAACCTTGTAGCTAGTGT+TGG 0.483602 2_1:-75114058 Msa0225100:CDS
TGAAAGGCTCCGAGGCAATT+GGG 0.483983 2_1:-75112446 Msa0225100:CDS
CCGACTCGTGTAGGAGACTA+AGG 0.487592 2_1:-75112473 Msa0225100:CDS
TTTCGAAACGATCGAATTGG+TGG 0.491043 2_1:+75113341 None:intergenic
ACATAGAGACAGTCAAATCC+TGG 0.496327 2_1:+75113266 None:intergenic
TATACAGCCACAAACTTCAA+AGG 0.497093 2_1:+75111882 None:intergenic
GTTAGTACCAATGGTAAAGC+AGG 0.504295 2_1:+75113145 None:intergenic
TCAGTTGCTACTGCTGCTGC+TGG 0.505717 2_1:-75114142 Msa0225100:CDS
GATGGAGATTGGATGCTTGT+AGG 0.506785 2_1:-75112764 Msa0225100:CDS
CTATCAGGAGATTCACAACC+AGG 0.513603 2_1:+75114169 None:intergenic
GAGCTCAGACTAGGCTTACC+TGG 0.513881 2_1:-75114187 Msa0225100:CDS
TGGAGTTTCTCTATGAATGA+TGG 0.515427 2_1:-75113989 Msa0225100:CDS
TTTAGCAAATAATCCATCAA+TGG 0.515926 2_1:-75114245 Msa0225100:CDS
GCTAGTGTTGGAGCTAAAAG+AGG 0.516388 2_1:-75114046 Msa0225100:CDS
GTTGCTACTGCTGCTGCTGG+TGG 0.518150 2_1:-75114139 Msa0225100:CDS
TAGCTCCAACACTAGCTACA+AGG 0.519601 2_1:+75114053 None:intergenic
CCATTAGAACATGATTACAT+AGG 0.521656 2_1:-75114268 Msa0225100:CDS
GGCTCCGAGGCAATTGGGCT+AGG 0.521923 2_1:-75112441 Msa0225100:intron
GATGAAGCTGAGGGAAAACC+AGG 0.522587 2_1:-75113284 Msa0225100:CDS
GGTAGGAAATCGGTTTGCTA+TGG 0.523498 2_1:+75111701 None:intergenic
ATGTTCACCTGCTTTACCAT+TGG 0.525163 2_1:-75113152 Msa0225100:intron
TAGTAGCATAGGAGAGGAGT+TGG 0.526621 2_1:+75114431 None:intergenic
TCTCCAAGAGGAGGGAATGT+TGG 0.528075 2_1:-75113944 Msa0225100:CDS
TCACTTAGTCCATCTTTCCC+AGG 0.528669 2_1:+75112845 None:intergenic
ACTAAGTGAGAGCTCTTTGA+GGG 0.537995 2_1:-75112831 Msa0225100:CDS
GCAATTCTCCTGGACTTCCT+GGG 0.538453 2_1:-75112862 Msa0225100:CDS
CTTACATATGAAGATAAAGA+TGG 0.540325 2_1:-75112782 Msa0225100:CDS
AGCATAGGAGAGGAGTTGGC+TGG 0.541759 2_1:+75114435 None:intergenic
CATACCTAGCCCAATTGCCT+CGG 0.543011 2_1:+75112437 None:intergenic
GTTTGCAGCTCCAAGAGCCA+TGG 0.546429 2_1:-75112155 Msa0225100:intron
TATGTAAAAGTCAGTATGGA+TGG 0.548265 2_1:-75113248 Msa0225100:CDS
AGTGAAGATGGGAAGCTGCC+CGG 0.551245 2_1:-75111768 Msa0225100:three_prime_UTR
AGTCTCTTTCTTTGCCAACA+AGG 0.555451 2_1:-75114116 Msa0225100:CDS
AAAGAAACATACTTTGCAGC+AGG 0.558479 2_1:+75113779 None:intergenic
TGCATATATAAAGGTTTACA+AGG 0.561342 2_1:-75112067 Msa0225100:three_prime_UTR
TTTGCAGCTCCAAGAGCCAT+GGG 0.568102 2_1:-75112154 Msa0225100:intron
TGATATGTATGTAGTAGCAT+AGG 0.570912 2_1:+75114420 None:intergenic
TCTATGAATGATGGATCTGA+AGG 0.572939 2_1:-75113980 Msa0225100:CDS
AAGGAAACTGAGCTCAGACT+AGG 0.575995 2_1:-75114196 Msa0225100:CDS
AAACTTCTGTAATAGGGCAC+AGG 0.579506 2_1:-75113375 Msa0225100:intron
TGGTGCTCCTTATCTCAGAA+AGG 0.583817 2_1:-75113228 Msa0225100:CDS
TTTCCCAGAAGACTCATCAA+TGG 0.587418 2_1:+75114012 None:intergenic
CTTTGTTCTCTCCAAGAGGA+GGG 0.588412 2_1:-75113952 Msa0225100:CDS
TGGTACAGAAAGTCCCAAGA+AGG 0.589577 2_1:-75114479 Msa0225100:five_prime_UTR
AAAGAACAATGATGAAGCTG+AGG 0.598000 2_1:-75113294 Msa0225100:CDS
GCTTTGTTCTCTCCAAGAGG+AGG 0.598726 2_1:-75113953 Msa0225100:CDS
GGATGTTCGCCGACTCGTGT+AGG 0.604960 2_1:-75112482 Msa0225100:CDS
TGTATGTAGTAGCATAGGAG+AGG 0.607709 2_1:+75114425 None:intergenic
CTAGCTACAAGGTTCTTCAA+AGG 0.626425 2_1:+75114064 None:intergenic
ATAGGGCACAGGTTGTGGGA+TGG 0.638025 2_1:-75113364 Msa0225100:intron
AAGAACAATGATGAAGCTGA+GGG 0.641734 2_1:-75113293 Msa0225100:CDS
GCTGCTTTGTTCTCTCCAAG+AGG 0.650123 2_1:-75113956 Msa0225100:CDS
CCTTAGTCTCCTACACGAGT+CGG 0.654169 2_1:+75112473 None:intergenic
AGGAGACTAAGGATCATGAA+AGG 0.655773 2_1:-75112462 Msa0225100:CDS
CTTGTAGGTGATGTTCCTTG+GGG 0.665765 2_1:-75112749 Msa0225100:CDS
TTGTAGGTGATGTTCCTTGG+GGG 0.698490 2_1:-75112748 Msa0225100:intron
AAGGATCATGAAAGGCTCCG+AGG 0.730710 2_1:-75112454 Msa0225100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTGTTTTTTTAT+GGG - chr2_1:75112608-75112627 Msa0225100:intron 10.0%
!!! TATTTGATATTTTTTCATCT+AGG - chr2_1:75111903-75111922 Msa0225100:three_prime_UTR 15.0%
!!! GTTTTTTGTTTGTTTTTTTA+TGG - chr2_1:75112607-75112626 Msa0225100:intron 15.0%
!!! AAATTATTTACATGTGTTTT+AGG - chr2_1:75113159-75113178 Msa0225100:CDS 15.0%
!!! GTTACATATATTTTTGATTT+TGG + chr2_1:75114191-75114210 None:intergenic 15.0%
!! AAAAGAAAGAGTAAAAAGTT+TGG - chr2_1:75111711-75111730 Msa0225100:three_prime_UTR 20.0%
!! AAAAAATCATGTCTATTCAA+GGG + chr2_1:75112654-75112673 None:intergenic 20.0%
!! AAAAAAATCATGTCTATTCA+AGG + chr2_1:75112655-75112674 None:intergenic 20.0%
!!! CACTATTTTTGAATTATACA+TGG + chr2_1:75112738-75112757 None:intergenic 20.0%
!! CATGTATAATTCAAAAATAG+TGG - chr2_1:75112736-75112755 Msa0225100:intron 20.0%
!! AATAGTGGTTAATGAATATT+TGG - chr2_1:75112751-75112770 Msa0225100:CDS 20.0%
!! ATAGTGGTTAATGAATATTT+GGG - chr2_1:75112752-75112771 Msa0225100:CDS 20.0%
!! AAAATCAAAATAAGGAGATA+AGG + chr2_1:75113113-75113132 None:intergenic 20.0%
!! GTGTGTAAAAAATCAAAATA+AGG + chr2_1:75113121-75113140 None:intergenic 20.0%
!!! ATTTTACAGCAAGTAAAAAA+TGG + chr2_1:75113143-75113162 None:intergenic 20.0%
!! TAAAATAAACAACAAAAGTC+TGG + chr2_1:75113882-75113901 None:intergenic 20.0%
!! ATATCTTGTAATCTTTGATA+TGG - chr2_1:75113975-75113994 Msa0225100:CDS 20.0%
!! AAATATGTGTATATATTCTC+TGG + chr2_1:75114285-75114304 None:intergenic 20.0%
!! TTTGAACAATTTATGTAGTT+TGG - chr2_1:75114384-75114403 Msa0225100:five_prime_UTR 20.0%
! TTTAGCAAATAATCCATCAA+TGG - chr2_1:75111965-75111984 Msa0225100:three_prime_UTR 25.0%
! TGTACATGAAAAGAATAAAC+AGG - chr2_1:75112379-75112398 Msa0225100:intron 25.0%
! GAAAAGAATAAACAGGTTAA+TGG - chr2_1:75112386-75112405 Msa0225100:intron 25.0%
! CAAAAAAAAGTAAACAGAAC+AGG + chr2_1:75112502-75112521 None:intergenic 25.0%
!!! ACATGATTTTTTTCTCTCTT+TGG - chr2_1:75112662-75112681 Msa0225100:intron 25.0%
! TTGTATCAAACTTCTGTAAT+AGG - chr2_1:75112828-75112847 Msa0225100:CDS 25.0%
! TGTATCAAACTTCTGTAATA+GGG - chr2_1:75112829-75112848 Msa0225100:CDS 25.0%
! TAAGGTAAGTAATTTGAAGA+AGG + chr2_1:75113095-75113114 None:intergenic 25.0%
! ATATTCGTATTCCTAAAATC+AGG - chr2_1:75113320-75113339 Msa0225100:CDS 25.0%
! CTTACATATGAAGATAAAGA+TGG - chr2_1:75113428-75113447 Msa0225100:intron 25.0%
!! ATTTCTTTTTATTCGCTGTT+TGG - chr2_1:75113491-75113510 Msa0225100:intron 25.0%
!!! AAGTTGACTTATTTTGTCTT+TGG + chr2_1:75113591-75113610 None:intergenic 25.0%
!! TTACACTCTAGATTTGTTTA+AGG - chr2_1:75113801-75113820 Msa0225100:CDS 25.0%
! ACAATCTAATAATTGTAGTG+CGG + chr2_1:75113953-75113972 None:intergenic 25.0%
! TCACTGATATGCATATATAA+AGG - chr2_1:75114134-75114153 Msa0225100:CDS 25.0%
! TGCATATATAAAGGTTTACA+AGG - chr2_1:75114143-75114162 Msa0225100:CDS 25.0%
! TTTAGTTAGTAGAATTCATC+TGG - chr2_1:75114251-75114270 Msa0225100:CDS 25.0%
!! TGATTTTTATGTAGTGAAGA+TGG - chr2_1:75114430-75114449 Msa0225100:five_prime_UTR 25.0%
!! GATTTTTATGTAGTGAAGAT+GGG - chr2_1:75114431-75114450 Msa0225100:five_prime_UTR 25.0%
ATGTTCAAAAGAACCTTCTT+GGG + chr2_1:75111747-75111766 None:intergenic 30.0%
AATGTTCAAAAGAACCTTCT+TGG + chr2_1:75111748-75111767 None:intergenic 30.0%
TGATATGTATGTAGTAGCAT+AGG + chr2_1:75111793-75111812 None:intergenic 30.0%
CCTATGTAATCATGTTCTAA+TGG + chr2_1:75111945-75111964 None:intergenic 30.0%
CCATTAGAACATGATTACAT+AGG - chr2_1:75111942-75111961 Msa0225100:three_prime_UTR 30.0%
AATGTTCTTCAAATCCTTGT+TGG + chr2_1:75112111-75112130 None:intergenic 30.0%
AATGTTGGAAAAACTCTTGT+TGG - chr2_1:75112281-75112300 Msa0225100:intron 30.0%
TGCAACAAAAAACATCAAAG+AGG - chr2_1:75112343-75112362 Msa0225100:intron 30.0%
! CTTTTGTTCATGTCATGTTT+TGG - chr2_1:75112528-75112547 Msa0225100:intron 30.0%
!!! ATTTGGGTTGTTTTCAGAAA+AGG - chr2_1:75112768-75112787 Msa0225100:CDS 30.0%
!!! TTTTTTCGAAACGATCGAAT+TGG + chr2_1:75112875-75112894 None:intergenic 30.0%
TCTCTATGTAAAAGTCAGTA+TGG - chr2_1:75112958-75112977 Msa0225100:intron 30.0%
TATGTAAAAGTCAGTATGGA+TGG - chr2_1:75112962-75112981 Msa0225100:intron 30.0%
AAGTTCCATATAGTTGTTGT+AGG + chr2_1:75113020-75113039 None:intergenic 30.0%
TATCTTATCTAGATCCTGTT+TGG - chr2_1:75113235-75113254 Msa0225100:CDS 30.0%
AATTAACTGTGTAACCAAAC+AGG + chr2_1:75113252-75113271 None:intergenic 30.0%
!! AATTGCATTGACCTGATTTT+AGG + chr2_1:75113334-75113353 None:intergenic 30.0%
ATGAAGATAAAGATGGAGAT+TGG - chr2_1:75113435-75113454 Msa0225100:intron 30.0%
CAGCTTAATTAAGCACTTAT+AGG - chr2_1:75113519-75113538 Msa0225100:intron 30.0%
!! GCTTCAATATGAAAGTGTTT+GGG + chr2_1:75113647-75113666 None:intergenic 30.0%
!! AGCTTCAATATGAAAGTGTT+TGG + chr2_1:75113648-75113667 None:intergenic 30.0%
! AATCGGCTTAACTAAATTGT+TGG - chr2_1:75113697-75113716 Msa0225100:intron 30.0%
CAATCTAATAATTGTAGTGC+GGG + chr2_1:75113952-75113971 None:intergenic 30.0%
TAATCTTTGATATGGATCAC+TGG - chr2_1:75113983-75114002 Msa0225100:CDS 30.0%
!!! ATGGATCACTGGTTTTATAT+TGG - chr2_1:75113994-75114013 Msa0225100:CDS 30.0%
! TACAAGGAAGTTTGAGTTTA+TGG - chr2_1:75114159-75114178 Msa0225100:CDS 30.0%
TTTGTGGCTGTATAAAAGAA+TGG - chr2_1:75114337-75114356 Msa0225100:five_prime_UTR 30.0%
! TCGAATGATATTTTCGATTC+CGG + chr2_1:75114464-75114483 None:intergenic 30.0%
! GAAGATGTTTTGTCCATTGA+TGG + chr2_1:75111981-75112000 None:intergenic 35.0%
ATCTTCTTCTCTCAACTTCA+AGG - chr2_1:75111995-75112014 Msa0225100:three_prime_UTR 35.0%
!! GTAGCAACTGATTTTCTATC+AGG + chr2_1:75112059-75112078 None:intergenic 35.0%
TGGAGTTTCTCTATGAATGA+TGG - chr2_1:75112221-75112240 Msa0225100:intron 35.0%
!! TCTATGAATGATGGATCTGA+AGG - chr2_1:75112230-75112249 Msa0225100:intron 35.0%
AAAGAAACATACTTTGCAGC+AGG + chr2_1:75112434-75112453 None:intergenic 35.0%
TGGTTACCTAGATTAGACAA+AGG - chr2_1:75112548-75112567 Msa0225100:intron 35.0%
CTTTCACCTTTGTCTAATCT+AGG + chr2_1:75112557-75112576 None:intergenic 35.0%
ATCGTTTCGAAAAAACACGA+TGG - chr2_1:75112880-75112899 Msa0225100:intron 35.0%
AAAGAACAATGATGAAGCTG+AGG - chr2_1:75112916-75112935 Msa0225100:intron 35.0%
AAGAACAATGATGAAGCTGA+GGG - chr2_1:75112917-75112936 Msa0225100:intron 35.0%
!! AGATCAACCTTTCTGAGATA+AGG + chr2_1:75112992-75113011 None:intergenic 35.0%
CAAGACCTACAACAACTATA+TGG - chr2_1:75113012-75113031 Msa0225100:intron 35.0%
GAAGGTAAAGTTAGTACCAA+TGG + chr2_1:75113077-75113096 None:intergenic 35.0%
TTACATGAGAAAGTCAAGCT+AGG + chr2_1:75113194-75113213 None:intergenic 35.0%
AAAGAAATAACTTACCCCCA+AGG + chr2_1:75113479-75113498 None:intergenic 35.0%
GTTAAATCGTGATAGTCCAA+TGG - chr2_1:75113671-75113690 Msa0225100:intron 35.0%
TGATAGTCCAATGGTTGAAT+CGG - chr2_1:75113680-75113699 Msa0225100:intron 35.0%
! ACTAAATTGTTGGTTGATGC+AGG - chr2_1:75113707-75113726 Msa0225100:intron 35.0%
!!! GAGTTTTTCTGGACTAGTTT+TGG + chr2_1:75114094-75114113 None:intergenic 35.0%
TATCAGTGAATTCTCCTCTT+TGG + chr2_1:75114123-75114142 None:intergenic 35.0%
TATACAGCCACAAACTTCAA+AGG + chr2_1:75114331-75114350 None:intergenic 35.0%
! CGAATGATATTTTCGATTCC+GGG + chr2_1:75114463-75114482 None:intergenic 35.0%
TGTATGTAGTAGCATAGGAG+AGG + chr2_1:75111788-75111807 None:intergenic 40.0%
AGTCTCTTTCTTTGCCAACA+AGG - chr2_1:75112094-75112113 Msa0225100:three_prime_UTR 40.0%
CTAGCTACAAGGTTCTTCAA+AGG + chr2_1:75112149-75112168 None:intergenic 40.0%
AAGAACCTTGTAGCTAGTGT+TGG - chr2_1:75112152-75112171 Msa0225100:intron 40.0%
ATGCCATTGATGAGTCTTCT+GGG - chr2_1:75112195-75112214 Msa0225100:intron 40.0%
TTTCCCAGAAGACTCATCAA+TGG + chr2_1:75112201-75112220 None:intergenic 40.0%
! TTGATGAGTCTTCTGGGAAA+TGG - chr2_1:75112201-75112220 Msa0225100:intron 40.0%
AAACTTCTGTAATAGGGCAC+AGG - chr2_1:75112835-75112854 Msa0225100:CDS 40.0%
TTTCGAAACGATCGAATTGG+TGG + chr2_1:75112872-75112891 None:intergenic 40.0%
ACATAGAGACAGTCAAATCC+TGG + chr2_1:75112947-75112966 None:intergenic 40.0%
ATGTTCACCTGCTTTACCAT+TGG - chr2_1:75113058-75113077 Msa0225100:intron 40.0%
GTTAGTACCAATGGTAAAGC+AGG + chr2_1:75113068-75113087 None:intergenic 40.0%
ACTAAGTGAGAGCTCTTTGA+GGG - chr2_1:75113379-75113398 Msa0225100:intron 40.0%
! TCTTTGAGGGATCTTCTTCA+TGG - chr2_1:75113392-75113411 Msa0225100:intron 40.0%
AAGTGTTTGGGAGAGCTTAT+AGG + chr2_1:75113635-75113654 None:intergenic 40.0%
! AGTTAAGCCGATTCAACCAT+TGG + chr2_1:75113690-75113709 None:intergenic 40.0%
AGGAGACTAAGGATCATGAA+AGG - chr2_1:75113748-75113767 Msa0225100:intron 40.0%
ACTAGTCCAGAAAAACTCGT+TGG - chr2_1:75114096-75114115 Msa0225100:CDS 40.0%
! TTTGGTCCAACGAGTTTTTC+TGG + chr2_1:75114105-75114124 None:intergenic 40.0%
AAAAACTCGTTGGACCAAAG+AGG - chr2_1:75114106-75114125 Msa0225100:CDS 40.0%
!! TTGTGCACCTTTGAAGTTTG+TGG - chr2_1:75114321-75114340 Msa0225100:five_prime_UTR 40.0%
TGGTACAGAAAGTCCCAAGA+AGG - chr2_1:75111731-75111750 Msa0225100:three_prime_UTR 45.0%
TAGTAGCATAGGAGAGGAGT+TGG + chr2_1:75111782-75111801 None:intergenic 45.0%
AAGGAAACTGAGCTCAGACT+AGG - chr2_1:75112014-75112033 Msa0225100:three_prime_UTR 45.0%
CTATCAGGAGATTCACAACC+AGG + chr2_1:75112044-75112063 None:intergenic 45.0%
TAGCTCCAACACTAGCTACA+AGG + chr2_1:75112160-75112179 None:intergenic 45.0%
! GCTAGTGTTGGAGCTAAAAG+AGG - chr2_1:75112164-75112183 Msa0225100:intron 45.0%
GATGCCATTGATGAGTCTTC+TGG - chr2_1:75112194-75112213 Msa0225100:intron 45.0%
CTTTGTTCTCTCCAAGAGGA+GGG - chr2_1:75112258-75112277 Msa0225100:intron 45.0%
TTTCCAACATTCCCTCCTCT+TGG + chr2_1:75112272-75112291 None:intergenic 45.0%
TGTAATAGGGCACAGGTTGT+GGG - chr2_1:75112842-75112861 Msa0225100:CDS 45.0%
TGGTGCTCCTTATCTCAGAA+AGG - chr2_1:75112982-75113001 Msa0225100:intron 45.0%
TCAGGTCAATGCAATTCTCC+TGG - chr2_1:75113338-75113357 Msa0225100:CDS 45.0%
TCACTTAGTCCATCTTTCCC+AGG + chr2_1:75113368-75113387 None:intergenic 45.0%
GACTAAGTGAGAGCTCTTTG+AGG - chr2_1:75113378-75113397 Msa0225100:intron 45.0%
GATGGAGATTGGATGCTTGT+AGG - chr2_1:75113446-75113465 Msa0225100:intron 45.0%
TGCTTGTAGGTGATGTTCCT+TGG - chr2_1:75113459-75113478 Msa0225100:intron 45.0%
GCTTGTAGGTGATGTTCCTT+GGG - chr2_1:75113460-75113479 Msa0225100:intron 45.0%
CTTGTAGGTGATGTTCCTTG+GGG - chr2_1:75113461-75113480 Msa0225100:intron 45.0%
TTGTAGGTGATGTTCCTTGG+GGG - chr2_1:75113462-75113481 Msa0225100:intron 45.0%
! CTAGATTTTCCCATGGCTCT+TGG + chr2_1:75114068-75114087 None:intergenic 45.0%
CAAGAGCCATGGGAAAATCT+AGG - chr2_1:75114066-75114085 Msa0225100:CDS 45.0%
! TTGGCTCCTAGATTTTCCCA+TGG + chr2_1:75114075-75114094 None:intergenic 45.0%
! GCTGCTTTGTTCTCTCCAAG+AGG - chr2_1:75112254-75112273 Msa0225100:intron 50.0%
! GCTTTGTTCTCTCCAAGAGG+AGG - chr2_1:75112257-75112276 Msa0225100:intron 50.0%
TCTCCAAGAGGAGGGAATGT+TGG - chr2_1:75112266-75112285 Msa0225100:intron 50.0%
CTGTAATAGGGCACAGGTTG+TGG - chr2_1:75112841-75112860 Msa0225100:CDS 50.0%
GATGAAGCTGAGGGAAAACC+AGG - chr2_1:75112926-75112945 Msa0225100:intron 50.0%
TGCAATTCTCCTGGACTTCC+TGG - chr2_1:75113347-75113366 Msa0225100:CDS 50.0%
GCAATTCTCCTGGACTTCCT+GGG - chr2_1:75113348-75113367 Msa0225100:CDS 50.0%
CCTTAGTCTCCTACACGAGT+CGG + chr2_1:75113740-75113759 None:intergenic 50.0%
AAGGATCATGAAAGGCTCCG+AGG - chr2_1:75113756-75113775 Msa0225100:intron 50.0%
ATGAAAGGCTCCGAGGCAAT+TGG - chr2_1:75113763-75113782 Msa0225100:intron 50.0%
TGAAAGGCTCCGAGGCAATT+GGG - chr2_1:75113764-75113783 Msa0225100:intron 50.0%
CATACCTAGCCCAATTGCCT+CGG + chr2_1:75113776-75113795 None:intergenic 50.0%
TTTGCAGCTCCAAGAGCCAT+GGG - chr2_1:75114056-75114075 Msa0225100:CDS 50.0%
AGCATAGGAGAGGAGTTGGC+TGG + chr2_1:75111778-75111797 None:intergenic 55.0%
GAGCTCAGACTAGGCTTACC+TGG - chr2_1:75112023-75112042 Msa0225100:three_prime_UTR 55.0%
TCAGTTGCTACTGCTGCTGC+TGG - chr2_1:75112068-75112087 Msa0225100:three_prime_UTR 55.0%
ATAGGGCACAGGTTGTGGGA+TGG - chr2_1:75112846-75112865 Msa0225100:CDS 55.0%
CCATCTTTCCCAGGAAGTCC+AGG + chr2_1:75113359-75113378 None:intergenic 55.0%
CCTGGACTTCCTGGGAAAGA+TGG - chr2_1:75113356-75113375 Msa0225100:CDS 55.0%
! CCGACTCGTGTAGGAGACTA+AGG - chr2_1:75113737-75113756 Msa0225100:intron 55.0%
GTTTGCAGCTCCAAGAGCCA+TGG - chr2_1:75114055-75114074 Msa0225100:CDS 55.0%
AGTGAAGATGGGAAGCTGCC+CGG - chr2_1:75114442-75114461 Msa0225100:five_prime_UTR 55.0%
GTTGCTACTGCTGCTGCTGG+TGG - chr2_1:75112071-75112090 Msa0225100:three_prime_UTR 60.0%
!! GGATGTTCGCCGACTCGTGT+AGG - chr2_1:75113728-75113747 Msa0225100:intron 60.0%
GGCTCCGAGGCAATTGGGCT+AGG - chr2_1:75113769-75113788 Msa0225100:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 75111711 75114521 75111711 ID=Msa0225100;Name=Msa0225100
chr2_1 mRNA 75111711 75114521 75111711 ID=Msa0225100-mRNA-1;Parent=Msa0225100;Name=Msa0225100-mRNA-1;_AED=0.03;_eAED=0.03;_QI=222|1|1|1|1|1|5|421|326
chr2_1 exon 75111711 75112169 75111711 ID=Msa0225100-mRNA-1:exon:22463;Parent=Msa0225100-mRNA-1
chr2_1 exon 75112442 75112503 75112442 ID=Msa0225100-mRNA-1:exon:22462;Parent=Msa0225100-mRNA-1
chr2_1 exon 75112749 75112890 75112749 ID=Msa0225100-mRNA-1:exon:22461;Parent=Msa0225100-mRNA-1
chr2_1 exon 75113153 75113382 75113153 ID=Msa0225100-mRNA-1:exon:22460;Parent=Msa0225100-mRNA-1
chr2_1 exon 75113791 75114521 75113791 ID=Msa0225100-mRNA-1:exon:22459;Parent=Msa0225100-mRNA-1
chr2_1 five_prime_UTR 75114300 75114521 75114300 ID=Msa0225100-mRNA-1:five_prime_utr;Parent=Msa0225100-mRNA-1
chr2_1 CDS 75113791 75114299 75113791 ID=Msa0225100-mRNA-1:cds;Parent=Msa0225100-mRNA-1
chr2_1 CDS 75113153 75113382 75113153 ID=Msa0225100-mRNA-1:cds;Parent=Msa0225100-mRNA-1
chr2_1 CDS 75112749 75112890 75112749 ID=Msa0225100-mRNA-1:cds;Parent=Msa0225100-mRNA-1
chr2_1 CDS 75112442 75112503 75112442 ID=Msa0225100-mRNA-1:cds;Parent=Msa0225100-mRNA-1
chr2_1 CDS 75112132 75112169 75112132 ID=Msa0225100-mRNA-1:cds;Parent=Msa0225100-mRNA-1
chr2_1 three_prime_UTR 75111711 75112131 75111711 ID=Msa0225100-mRNA-1:three_prime_utr;Parent=Msa0225100-mRNA-1
Gene Sequence

>Msa0225100

ATGTCTACACCATTAGAACATGATTACATAGGTTTAGCAAATAATCCATCAATGGACAAAACATCTTCTTCTCTCAACTTCAAGGAAACTGAGCTCAGACTAGGCTTACCTGGTTGTGAATCTCCTGATAGAAAATCAGTTGCTACTGCTGCTGCTGGTGGAGTCTCTTTCTTTGCCAACAAGGATTTGAAGAACATTAATGTTTGTTCTTCTCCTTTGAAGAACCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTCTGATGCCATTGATGAGTCTTCTGGGAAATGGAGTTTCTCTATGAATGATGGATCTGAAGGAGCTGCTTTGTTCTCTCCAAGAGGAGGGAATGTTGGAAAAACTCTTGTTGGTTTAGAGACTCAAACTAATATTCAGAAGATTAATACAAATGCAACAAAAAACATCAAAGAGGTTCTTCATCAATCTGTACATGAAAAGAATAAACAGGTTAATGGAACAAATGAGCATGCTAATGCTCCTGCTGCAAAGGCACAGGTTGTGGGATGGCCACCAATTCGATCGTTTCGAAAAAACACGATGGCATCTAATTTGTCAAAGAACAATGATGAAGCTGAGGGAAAACCAGGATTTGACTGTCTCTATGTAAAAGTCAGTATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTCAAGACCTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACCTGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGTGATGTTCCTTGGGGGATGTTCGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAGGCAATTGGGCTAGCTCCAAGAGCCATGGGAAAATCTAGGAGCCAAAACTAG

Protein sequence

>Msa0225100

MSTPLEHDYIGLANNPSMDKTSSSLNFKETELRLGLPGCESPDRKSVATAAAGGVSFFANKDLKNINVCSSPLKNLVASVGAKRGFSDAIDESSGKWSFSMNDGSEGAALFSPRGGNVGKTLVGLETQTNIQKINTNATKNIKEVLHQSVHEKNKQVNGTNEHANAPAAKAQVVGWPPIRSFRKNTMASNLSKNNDEAEGKPGFDCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLAPRAMGKSRSQN*