AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0913480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913480 MtrunA17_Chr6g0467101 98.462 195 3 0 1 195 1 195 9.31e-145 400
Msa0913480 MtrunA17_Chr1g0201541 63.810 210 58 3 1 195 1 207 1.57e-88 258
Msa0913480 MtrunA17_Chr8g0383401 51.415 212 78 6 1 195 1 204 1.50e-61 190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913480 AT4G09830.1 63.131 198 63 3 1 195 1 191 6.26e-73 219
Msa0913480 AT5G64780.1 48.066 181 81 3 1 178 1 171 6.80e-47 152

Find 81 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTCAGCTTTATCAAAT+TGG 0.213955 6_2:+24311768 Msa0913480:CDS
CGCGGCGGACTTGCGTTTCT+TGG 0.219442 6_2:-24305688 None:intergenic
GTCTGGATTCGCTTGCTCTT+TGG 0.231636 6_2:+24311983 Msa0913480:three_prime_UTR
CCAGTCACTTCAGGAACTTC+TGG 0.246666 6_2:+24311642 Msa0913480:CDS
ATCCATGGCAGAATCATTAT+TGG 0.297537 6_2:-24311850 None:intergenic
TCAGGCTTTCCAGTCACTTC+AGG 0.305417 6_2:+24311633 Msa0913480:CDS
CTAGTCCTATTCTTGTCTAT+TGG 0.309010 6_2:+24311884 Msa0913480:exon
TTTGAAAACACCGAGTTCTT+TGG 0.310535 6_2:-24311720 None:intergenic
GTGTCATTGGCTGTGGCTGC+TGG 0.346101 6_2:-24311599 None:intergenic
AGCTGAAGATTTCGACGAAC+AGG 0.349902 6_2:-24311756 None:intergenic
GCCCGGCCCCAGCTATTGTT+TGG 0.350708 6_2:-24311665 None:intergenic
CGTTTCTTGGCCATTGGAAT+CGG 0.356543 6_2:-24305675 None:intergenic
AACCATCACAATTCCTTGTC+TGG 0.363764 6_2:+24311966 Msa0913480:three_prime_UTR
TTGTGTTCTAAATTTCTTCA+AGG 0.369204 6_2:+24312265 Msa0913480:three_prime_UTR
TGATGTAGTTAACTACATTC+AGG 0.382450 6_2:+24309256 Msa0913480:CDS
AGAAAGCTTCTGATGATTCA+TGG 0.396363 6_2:-24305793 None:intergenic
GCGGAGATCGGTGGTGGAGG+TGG 0.398350 6_2:-24305653 None:intergenic
ATGACACCTGTCACCAGTTC+AGG 0.399220 6_2:+24311615 Msa0913480:CDS
GACTTGCGTTTCTTGGCCAT+TGG 0.414839 6_2:-24305681 None:intergenic
CAAGGAATTGTGATGGTTGT+TGG 0.420570 6_2:-24311961 None:intergenic
ACTTCTGGCCAAACAATAGC+TGG 0.421636 6_2:+24311657 Msa0913480:CDS
ATGAGGGTTGTTGTTTGATT+CGG 0.422043 6_2:-24305629 None:intergenic
TGTGTTCTAAATTTCTTCAA+GGG 0.422627 6_2:+24312266 Msa0913480:three_prime_UTR
GTCCACAGATTCTATCCATA+TGG 0.424399 6_2:+24312190 Msa0913480:three_prime_UTR
ACAAACCAATAGACAAGAAT+AGG 0.435250 6_2:-24311889 None:intergenic
CAGAATGAGTTAGATTATTG+TGG 0.452182 6_2:+24311537 Msa0913480:intron
GGCCAAACAATAGCTGGGGC+CGG 0.453630 6_2:+24311663 Msa0913480:CDS
TCGGCGGAGATCGGTGGTGG+AGG 0.454809 6_2:-24305656 None:intergenic
GAACTGGTGACAGGTGTCAT+TGG 0.459793 6_2:-24311612 None:intergenic
GCCAAACAATAGCTGGGGCC+GGG 0.486665 6_2:+24311664 Msa0913480:CDS
GAATCGGCGGAGATCGGTGG+TGG 0.489512 6_2:-24305659 None:intergenic
CGGTGGCGCTCTGGGTGACA+TGG 0.493009 6_2:-24311571 None:intergenic
AACAACTGTAAATCGCCATA+TGG 0.493019 6_2:-24312205 None:intergenic
AGAATTAGCAGCGGTGGAGA+AGG 0.493812 6_2:-24305748 None:intergenic
AGTGACTGGAAAGCCTGAAC+TGG 0.501227 6_2:-24311628 None:intergenic
CCATTGGAATCGGCGGAGAT+CGG 0.501929 6_2:-24305665 None:intergenic
TCGGTGGTGGAGGTGGAATG+AGG 0.504668 6_2:-24305646 None:intergenic
CGGTGGTGGAGGTGGAATGA+GGG 0.505529 6_2:-24305645 None:intergenic
ACAATAGCTGGGGCCGGGCA+AGG 0.510273 6_2:+24311669 Msa0913480:CDS
GTGACAGGTGTCATTGGCTG+TGG 0.512002 6_2:-24311606 None:intergenic
GCTTACGTCGACCAAGCGAT+TGG 0.516697 6_2:+24312060 Msa0913480:three_prime_UTR
GTGTTCTAAATTTCTTCAAG+GGG 0.522849 6_2:+24312267 Msa0913480:three_prime_UTR
AAGACTCCAAACCAATCGCT+TGG 0.531726 6_2:-24312071 None:intergenic
CCAGAAGTTCCTGAAGTGAC+TGG 0.532351 6_2:-24311642 None:intergenic
AGAAAGAGAATTAGCAGCGG+TGG 0.534056 6_2:-24305754 None:intergenic
CAGCTTTATCAAATTGGTGA+GGG 0.538099 6_2:+24311774 Msa0913480:CDS
CGCCATATGGATAGAATCTG+TGG 0.540015 6_2:-24312192 None:intergenic
GGAAAGCCTGAACTGGTGAC+AGG 0.540745 6_2:-24311621 None:intergenic
AACAAGAAGAAGGAGGGTCG+AGG 0.541006 6_2:+24309222 Msa0913480:CDS
ATCGGAGCGTAGTCCTTGCC+CGG 0.541129 6_2:-24311682 None:intergenic
AAGCAACCCCTGAAATCTAA+AGG 0.541219 6_2:-24312135 None:intergenic
CTTCTGGCCAAACAATAGCT+GGG 0.543316 6_2:+24311658 Msa0913480:CDS
CCGATCTCCGCCGATTCCAA+TGG 0.544286 6_2:+24305665 Msa0913480:exon
CTTTATCAAATTGGTGAGGG+TGG 0.546767 6_2:+24311777 Msa0913480:CDS
GGGGAGATTATGGAAAGAGA+GGG 0.550825 6_2:-24305598 None:intergenic
GGTGGAGAAGGAAGCATACA+TGG 0.562243 6_2:-24305736 None:intergenic
TTCCAATAATGATTCTGCCA+TGG 0.570860 6_2:+24311848 Msa0913480:CDS
ATCGTGCAAGAAATGATAAG+AGG 0.572706 6_2:+24312006 Msa0913480:three_prime_UTR
TGGACAAATACAGATTTACA+AGG 0.573959 6_2:-24312172 None:intergenic
GCTGAAGATTTCGACGAACA+GGG 0.582791 6_2:-24311755 None:intergenic
CTAGTCTGCATGCATATCCA+TGG 0.585175 6_2:-24311865 None:intergenic
TCAGCTTTATCAAATTGGTG+AGG 0.587468 6_2:+24311773 Msa0913480:CDS
TGAAAATCAGCCAAAGAACT+CGG 0.589877 6_2:+24311710 Msa0913480:CDS
TTGGAATCGGCGGAGATCGG+TGG 0.591812 6_2:-24305662 None:intergenic
CTAGTCTCGACGAAGTCGAT+CGG 0.597037 6_2:+24305712 Msa0913480:CDS
TGGATTTGGAAACAAGAAGA+AGG 0.601954 6_2:+24309212 Msa0913480:CDS
TTCTTGGCCATTGGAATCGG+CGG 0.607083 6_2:-24305672 None:intergenic
TGTTCTAAATTTCTTCAAGG+GGG 0.616110 6_2:+24312268 Msa0913480:three_prime_UTR
TTTGAACCTTTAGATTTCAG+GGG 0.621957 6_2:+24312129 Msa0913480:three_prime_UTR
ATCCAGACAAGGAATTGTGA+TGG 0.628373 6_2:-24311968 None:intergenic
TCGTGCAAGAAATGATAAGA+GGG 0.629564 6_2:+24312007 Msa0913480:three_prime_UTR
ACAAGAAGAAGGAGGGTCGA+GGG 0.630981 6_2:+24309223 Msa0913480:CDS
TTCTGGCCAAACAATAGCTG+GGG 0.648372 6_2:+24311659 Msa0913480:CDS
TGCAAGAAATGATAAGAGGG+TGG 0.659280 6_2:+24312010 Msa0913480:three_prime_UTR
AGAGCAAGCGAATCCAGACA+AGG 0.659923 6_2:-24311979 None:intergenic
TTTGGAAACAAGAAGAAGGA+GGG 0.660375 6_2:+24309216 Msa0913480:CDS
ATTTGGAAACAAGAAGAAGG+AGG 0.667699 6_2:+24309215 Msa0913480:CDS
CGATTTACAGTTGTTGACGC+CGG 0.668661 6_2:+24312213 Msa0913480:three_prime_UTR
GGACAAATACAGATTTACAA+GGG 0.703342 6_2:-24312171 None:intergenic
CTGAGAAAGAGAATTAGCAG+CGG 0.709453 6_2:-24305757 None:intergenic
GACTTCGTCGAGACTAGACG+CGG 0.721299 6_2:-24305706 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAATAATTAAAA+AGG - chr6_2:24305877-24305896 None:intergenic 0.0%
!! TATATATATATATATATATA+AGG - chr6_2:24311050-24311069 None:intergenic 0.0%
!!! TGATTTTTTAAAATTATTAG+CGG + chr6_2:24306111-24306130 Msa0913480:intron 10.0%
!!! TAGATTTATTTTTTTTTTGT+AGG + chr6_2:24306280-24306299 Msa0913480:intron 10.0%
!!! TAAAAAAAAAAGTTTGATTT+TGG + chr6_2:24306829-24306848 Msa0913480:intron 10.0%
!! AATATATTAAAAATGAAACA+TGG - chr6_2:24309877-24309896 None:intergenic 10.0%
!!! AATTTTTATTTAGTTGTGTT+TGG + chr6_2:24305925-24305944 Msa0913480:intron 15.0%
!!! AAATGTTGTTTTTGATTTTA+AGG + chr6_2:24305965-24305984 Msa0913480:intron 15.0%
!!! TTTTGTTTTTAAGTTTGATT+TGG + chr6_2:24306539-24306558 Msa0913480:intron 15.0%
!!! ATTGTTTTTAAGTTTGATTT+TGG + chr6_2:24306734-24306753 Msa0913480:intron 15.0%
!! TTAATATATTATACAACATG+TGG + chr6_2:24309887-24309906 Msa0913480:intron 15.0%
!! TCTTAGAAAATAACTATTTA+GGG + chr6_2:24311003-24311022 Msa0913480:intron 15.0%
!! TATTCATAATCATAACAATA+AGG - chr6_2:24311161-24311180 None:intergenic 15.0%
!! CATATTTATAAGAGATATTT+GGG - chr6_2:24311319-24311338 None:intergenic 15.0%
!! TCATATTTATAAGAGATATT+TGG - chr6_2:24311320-24311339 None:intergenic 15.0%
!!! TTTTATACATGTATTTACTT+AGG - chr6_2:24311500-24311519 None:intergenic 15.0%
!!! AGGTTTTATACAAAATCTTA+CGG - chr6_2:24306027-24306046 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG - chr6_2:24306086-24306105 None:intergenic 20.0%
!!! TTTTTGTAGGATTTTTTAGT+TGG + chr6_2:24306293-24306312 Msa0913480:intron 20.0%
!! TTGTGATTTATTTATGTTGA+TGG + chr6_2:24307087-24307106 Msa0913480:intron 20.0%
!!! AGATGCTTAATTTTTTTGTT+CGG + chr6_2:24307111-24307130 Msa0913480:intron 20.0%
!! TAAAGTTAAACAAGTAACAT+GGG - chr6_2:24307525-24307544 None:intergenic 20.0%
!! TATAACCATAAAATCAACAA+GGG - chr6_2:24307829-24307848 None:intergenic 20.0%
!! TTATAACCATAAAATCAACA+AGG - chr6_2:24307830-24307849 None:intergenic 20.0%
!!! TTTTATGGTTATAATGTTGT+TGG + chr6_2:24307836-24307855 Msa0913480:intron 20.0%
!!! AATATTTTATGTGGATACTT+GGG + chr6_2:24307924-24307943 Msa0913480:intron 20.0%
!! CTTAAAACTCATAAATACAA+AGG - chr6_2:24307968-24307987 None:intergenic 20.0%
!!! CTTTGTATTTATGAGTTTTA+AGG + chr6_2:24307966-24307985 Msa0913480:intron 20.0%
!!! TCATTTTTTGTGATTCTTAT+TGG + chr6_2:24308077-24308096 Msa0913480:intron 20.0%
!!! TTTTTAAGTCTTTTCTTTTG+TGG + chr6_2:24308597-24308616 Msa0913480:intron 20.0%
!! AAAACAAACAAAACAAGAAA+AGG - chr6_2:24308637-24308656 None:intergenic 20.0%
!! GGAAATTCAAAAAAATGTAT+TGG - chr6_2:24308988-24309007 None:intergenic 20.0%
!!! TTTTTGAATTTCCACATATT+AGG + chr6_2:24308995-24309014 Msa0913480:intron 20.0%
!! TATATTCATGTATCTAATCT+AGG + chr6_2:24309103-24309122 Msa0913480:intron 20.0%
!!! AATTGCTTTGTAAATTTGTT+GGG + chr6_2:24309604-24309623 Msa0913480:intron 20.0%
!!! ATGTTGAAAGGTTTTTATAT+TGG + chr6_2:24309787-24309806 Msa0913480:intron 20.0%
!!! TGTTGAAAGGTTTTTATATT+GGG + chr6_2:24309788-24309807 Msa0913480:intron 20.0%
!!! TTGGTATGTTGAATATTTTT+AGG + chr6_2:24310074-24310093 Msa0913480:intron 20.0%
!! TTGAAAATAATAGTAACAAG+AGG - chr6_2:24310228-24310247 None:intergenic 20.0%
!! AATTATTGATCGATACATTT+AGG + chr6_2:24310376-24310395 Msa0913480:intron 20.0%
!!! TTTAGGATACTTCAATATTT+TGG + chr6_2:24310393-24310412 Msa0913480:intron 20.0%
!!! TTAGGATACTTCAATATTTT+GGG + chr6_2:24310394-24310413 Msa0913480:intron 20.0%
!!! AAATAGTTATTTTCTAAGAG+AGG - chr6_2:24311002-24311021 None:intergenic 20.0%
!! CTCTTAGAAAATAACTATTT+AGG + chr6_2:24311002-24311021 Msa0913480:intron 20.0%
!! CTTAGAAAATAACTATTTAG+GGG + chr6_2:24311004-24311023 Msa0913480:intron 20.0%
!! TTAGAAAATAACTATTTAGG+GGG + chr6_2:24311005-24311024 Msa0913480:intron 20.0%
!! TATATAACTATATCTACAGA+TGG - chr6_2:24311205-24311224 None:intergenic 20.0%
!! ATATCTCTTATAAATATGAC+CGG + chr6_2:24311321-24311340 Msa0913480:intron 20.0%
!! ATTTATATTAATACTTCCTC+CGG - chr6_2:24311343-24311362 None:intergenic 20.0%
!! AATAATCATATCAAGTATCT+AGG + chr6_2:24311360-24311379 Msa0913480:intron 20.0%
!!! AGATGCTTAATATATGATTT+TGG + chr6_2:24311472-24311491 Msa0913480:intron 20.0%
!! AGGTCAGATAAAAAATTTAA+TGG - chr6_2:24311915-24311934 None:intergenic 20.0%
!!! ACTTGTACTTTTTAACATTA+AGG + chr6_2:24312304-24312323 Msa0913480:three_prime_UTR 20.0%
!!! CTTGTACTTTTTAACATTAA+GGG + chr6_2:24312305-24312324 Msa0913480:three_prime_UTR 20.0%
!! TTTAAAATTATTAGCGGTGT+CGG + chr6_2:24306117-24306136 Msa0913480:intron 25.0%
!! TGACAATACCAAAATTTGTT+AGG + chr6_2:24306184-24306203 Msa0913480:intron 25.0%
!!! GGTTGTTTTTAAGTTTGATT+TGG + chr6_2:24306314-24306333 Msa0913480:intron 25.0%
!!! TAAGTTTGATTTGGTGTTTA+TGG + chr6_2:24306548-24306567 Msa0913480:intron 25.0%
!! ATGTTGTTGGTCTAATAAAA+TGG + chr6_2:24306576-24306595 Msa0913480:intron 25.0%
! CTGCTAATATCAAAATTGAT+AGG + chr6_2:24306627-24306646 Msa0913480:intron 25.0%
! ATAAAATCAGATACAACTGA+GGG - chr6_2:24306694-24306713 None:intergenic 25.0%
!!! AAGTTTGATTTTGGTGTTTA+TGG + chr6_2:24306838-24306857 Msa0913480:intron 25.0%
! GGTTAATAATGAGACATATT+CGG - chr6_2:24306933-24306952 None:intergenic 25.0%
! GAATATGTCTCATTATTAAC+CGG + chr6_2:24306932-24306951 Msa0913480:intron 25.0%
! TATTAACCGGATTTGAATTT+CGG + chr6_2:24306945-24306964 Msa0913480:intron 25.0%
! CAAAATAATGTTTGATTGAG+TGG - chr6_2:24307010-24307029 None:intergenic 25.0%
!!! CTTTATTACAAAGTATTGTC+AGG + chr6_2:24307417-24307436 Msa0913480:intron 25.0%
! GTAAAGTTAAACAAGTAACA+TGG - chr6_2:24307526-24307545 None:intergenic 25.0%
! TAACTTTACTCTAGTGTTTA+TGG + chr6_2:24307537-24307556 Msa0913480:intron 25.0%
!!! ATTTTCCCTTGTTGATTTTA+TGG + chr6_2:24307821-24307840 Msa0913480:intron 25.0%
! CAACTGCTAAATATCAAAAT+TGG + chr6_2:24307894-24307913 Msa0913480:intron 25.0%
! TGCTAAATATCAAAATTGGT+AGG + chr6_2:24307898-24307917 Msa0913480:intron 25.0%
!! GAATATTTTATGTGGATACT+TGG + chr6_2:24307923-24307942 Msa0913480:intron 25.0%
!!! TGTATTTATGAGTTTTAAGG+TGG + chr6_2:24307969-24307988 Msa0913480:intron 25.0%
! CAAAACAATGTTTGATTAAG+TGG - chr6_2:24307716-24307735 None:intergenic 25.0%
!! GATTTTCTGTTATAAAGTAC+CGG + chr6_2:24308115-24308134 Msa0913480:intron 25.0%
!!! ATTTTGTACTAAGAGTATTG+AGG - chr6_2:24308175-24308194 None:intergenic 25.0%
! TACAAAATGTTGTCAAATAG+TGG + chr6_2:24308187-24308206 Msa0913480:intron 25.0%
!!! TTGGCATTTGTCATTTTTTA+AGG + chr6_2:24308805-24308824 Msa0913480:intron 25.0%
!!! TGGCATTTGTCATTTTTTAA+GGG + chr6_2:24308806-24308825 Msa0913480:intron 25.0%
!! TTAGACTTTGTTTGAAAGTT+TGG + chr6_2:24308839-24308858 Msa0913480:intron 25.0%
!! TGGAAAAATGTTTCAACTTT+TGG - chr6_2:24308968-24308987 None:intergenic 25.0%
! TAATACAAAAGCCTAATATG+TGG - chr6_2:24309009-24309028 None:intergenic 25.0%
! CTATTGCTAATTTATTGATG+TGG + chr6_2:24309156-24309175 Msa0913480:intron 25.0%
!! AAAAACTTTATCAGTGGATT+TGG + chr6_2:24309198-24309217 Msa0913480:CDS 25.0%
! AAAACATATACGTATAGTAC+TGG + chr6_2:24309373-24309392 Msa0913480:intron 25.0%
! GCAACAAAGGATTTAAATTA+TGG + chr6_2:24309467-24309486 Msa0913480:intron 25.0%
! AAAGGATTTAAATTATGGCA+AGG + chr6_2:24309472-24309491 Msa0913480:intron 25.0%
! ATTTAAATTATGGCAAGGAA+GGG + chr6_2:24309477-24309496 Msa0913480:intron 25.0%
! CAATTGCTTTGTAAATTTGT+TGG + chr6_2:24309603-24309622 Msa0913480:intron 25.0%
!!! GTAAATTTGTTGGGAATATT+TGG + chr6_2:24309613-24309632 Msa0913480:intron 25.0%
! AAAATACTACACAGAATAAC+AGG - chr6_2:24309758-24309777 None:intergenic 25.0%
! TTTGATTGATTGATGTTGAA+AGG + chr6_2:24309775-24309794 Msa0913480:intron 25.0%
!! TTTTGTCAACACGATTATTT+TGG + chr6_2:24309942-24309961 Msa0913480:intron 25.0%
!!! TTTAAAGTACTAGTGTTTTC+AGG - chr6_2:24310132-24310151 None:intergenic 25.0%
!! CAATTTTCCATTTAGCTATA+TGG + chr6_2:24310245-24310264 Msa0913480:intron 25.0%
!! ATGATTTACTCCATCAATTT+TGG - chr6_2:24310286-24310305 None:intergenic 25.0%
!! TAGGATACTTCAATATTTTG+GGG + chr6_2:24310395-24310414 Msa0913480:intron 25.0%
!!! CAATGATCATTTTCTAGAAT+TGG + chr6_2:24310582-24310601 Msa0913480:intron 25.0%
! TATCAAATGTAATCAAATCC+TGG - chr6_2:24310957-24310976 None:intergenic 25.0%
! TGCATTGTTAAACAAATAAG+AGG + chr6_2:24311412-24311431 Msa0913480:intron 25.0%
! GCATTGTTAAACAAATAAGA+GGG + chr6_2:24311413-24311432 Msa0913480:intron 25.0%
!! AATCTTCAGCTTTATCAAAT+TGG + chr6_2:24311768-24311787 Msa0913480:CDS 25.0%
!! GCTAATTCTTGTTACATTTT+CGG + chr6_2:24312034-24312053 Msa0913480:three_prime_UTR 25.0%
!! ATTTTGAACCTTTAGATTTC+AGG + chr6_2:24312127-24312146 Msa0913480:three_prime_UTR 25.0%
!! TTTTGAACCTTTAGATTTCA+GGG + chr6_2:24312128-24312147 Msa0913480:three_prime_UTR 25.0%
! AAAAAAACAAAGAGCAAAAC+CGG - chr6_2:24312235-24312254 None:intergenic 25.0%
!! TTGTGTTCTAAATTTCTTCA+AGG + chr6_2:24312265-24312284 Msa0913480:three_prime_UTR 25.0%
!! TGTGTTCTAAATTTCTTCAA+GGG + chr6_2:24312266-24312285 Msa0913480:three_prime_UTR 25.0%
!!! TTGTTTGATTCGGCTTTTAA+GGG - chr6_2:24305622-24305641 None:intergenic 30.0%
!! AATACCAAAATTTGTTAGGC+TGG + chr6_2:24306188-24306207 Msa0913480:intron 30.0%
! ATATCCAGCCTAACAAATTT+TGG - chr6_2:24306195-24306214 None:intergenic 30.0%
!! GATTTGGTTTGTATTGTTGT+TGG + chr6_2:24306330-24306349 Msa0913480:intron 30.0%
GTTTATGGTTGTAATGTTGT+TGG + chr6_2:24306563-24306582 Msa0913480:intron 30.0%
TAAAATCAGATACAACTGAG+GGG - chr6_2:24306693-24306712 None:intergenic 30.0%
CATAAAATCAGATACAACTG+AGG - chr6_2:24306695-24306714 None:intergenic 30.0%
! AGTTGTATCTGATTTTATGC+AGG + chr6_2:24306696-24306715 Msa0913480:intron 30.0%
!!! AAGTTTGATTTTGGTGTTGT+TGG + chr6_2:24306743-24306762 Msa0913480:intron 30.0%
TAGGCAATACTGAAATTGTT+AGG + chr6_2:24306907-24306926 Msa0913480:intron 30.0%
ATTAACCGGATTTGAATTTC+GGG + chr6_2:24306946-24306965 Msa0913480:intron 30.0%
TTGTTAAATAGCAGGTATAG+CGG + chr6_2:24307139-24307158 Msa0913480:intron 30.0%
ATAGTGTTTCACAATGTTGA+TGG - chr6_2:24307340-24307359 None:intergenic 30.0%
CTACATTGTTGTAGTAGTAT+GGG - chr6_2:24307374-24307393 None:intergenic 30.0%
TCACAGATATCAGAAAATAG+TGG - chr6_2:24307492-24307511 None:intergenic 30.0%
GTTTATGGTTGTAATGTTGT+TGG + chr6_2:24306563-24306582 Msa0913480:intron 30.0%
GTTAGAACGAACATTATTCA+TGG + chr6_2:24307631-24307650 Msa0913480:intron 30.0%
AAAACTCTTCTCAACAACAT+GGG - chr6_2:24307754-24307773 None:intergenic 30.0%
AAAAACTCTTCTCAACAACA+TGG - chr6_2:24307755-24307774 None:intergenic 30.0%
! ATGTTGTTGAGAAGAGTTTT+TGG + chr6_2:24307754-24307773 Msa0913480:intron 30.0%
CACTATGAAATAGTGGTATA+GGG - chr6_2:24308215-24308234 None:intergenic 30.0%
CAAAATCCACTATGAAATAG+TGG - chr6_2:24308222-24308241 None:intergenic 30.0%
TACAAAATGTTGTCAGATAG+CGG + chr6_2:24308277-24308296 Msa0913480:intron 30.0%
! ATTAGGATTGATTCTTTGGA+TGG + chr6_2:24308376-24308395 Msa0913480:intron 30.0%
TATGGTATGGATTTAAAAGC+TGG + chr6_2:24308439-24308458 Msa0913480:intron 30.0%
TAACATGTAGTAGAAACTTC+TGG + chr6_2:24308538-24308557 Msa0913480:intron 30.0%
AACATGTAGTAGAAACTTCT+GGG + chr6_2:24308539-24308558 Msa0913480:intron 30.0%
AACCAATTAAGCTACACAAA+AGG - chr6_2:24308717-24308736 None:intergenic 30.0%
TAGCTTAATTGGTTGTGTAT+AGG + chr6_2:24308723-24308742 Msa0913480:intron 30.0%
TGATCTCGAACAAGAAAAAT+AGG - chr6_2:24308779-24308798 None:intergenic 30.0%
TTGTTCGAGATCAAATACTT+TGG + chr6_2:24308786-24308805 Msa0913480:intron 30.0%
! CTTTGTTTGAAAGTTTGGAA+TGG + chr6_2:24308844-24308863 Msa0913480:intron 30.0%
! AAAGTTTGGAATGGAGAAAA+GGG + chr6_2:24308853-24308872 Msa0913480:intron 30.0%
AAGCACTCATTCAAATAAAG+TGG - chr6_2:24308918-24308937 None:intergenic 30.0%
TATAAACTAAGGCTCTGTTT+GGG - chr6_2:24309047-24309066 None:intergenic 30.0%
TTATAAACTAAGGCTCTGTT+TGG - chr6_2:24309048-24309067 None:intergenic 30.0%
ACAGAGCCTTAGTTTATAAT+AGG + chr6_2:24309049-24309068 Msa0913480:intron 30.0%
CCATGACCTATTATAAACTA+AGG - chr6_2:24309058-24309077 None:intergenic 30.0%
CCTTAGTTTATAATAGGTCA+TGG + chr6_2:24309055-24309074 Msa0913480:intron 30.0%
ATCAGGAAAAACTTTATCAG+TGG + chr6_2:24309192-24309211 Msa0913480:intron 30.0%
TGATGTAGTTAACTACATTC+AGG + chr6_2:24309256-24309275 Msa0913480:CDS 30.0%
CACAATCAATGAAACATTTG+CGG + chr6_2:24309427-24309446 Msa0913480:intron 30.0%
GATTTAAATTATGGCAAGGA+AGG + chr6_2:24309476-24309495 Msa0913480:intron 30.0%
TCAAACTATGCACTAGTATA+TGG + chr6_2:24309557-24309576 Msa0913480:intron 30.0%
ATAGTCTATTACCATATGGA+AGG - chr6_2:24309669-24309688 None:intergenic 30.0%
! GAAAGGTTTTTATATTGGGA+TGG + chr6_2:24309792-24309811 Msa0913480:intron 30.0%
AAGTTGAAGATACAGAACAA+AGG - chr6_2:24310185-24310204 None:intergenic 30.0%
TTCCATTTAGCTATATGGTA+TGG + chr6_2:24310250-24310269 Msa0913480:intron 30.0%
! CTTAGGTTTTCCAAAATTGA+TGG + chr6_2:24310273-24310292 Msa0913480:intron 30.0%
GAGTAAATCATATTCGATAC+AGG + chr6_2:24310295-24310314 Msa0913480:intron 30.0%
! AAATTTGGAACATACTCCTT+GGG - chr6_2:24310348-24310367 None:intergenic 30.0%
! AAAATTTGGAACATACTCCT+TGG - chr6_2:24310349-24310368 None:intergenic 30.0%
GAGATCTAAAAAATGAGACA+TGG + chr6_2:24310516-24310535 Msa0913480:intron 30.0%
AAAAAATGAGACATGGTTGT+TGG + chr6_2:24310523-24310542 Msa0913480:intron 30.0%
AATATTAGTATCCAAGCACT+TGG + chr6_2:24310741-24310760 Msa0913480:intron 30.0%
ATATTAGTATCCAAGCACTT+GGG + chr6_2:24310742-24310761 Msa0913480:intron 30.0%
! CTTAACTAGTTTCTAATGGA+GGG - chr6_2:24310770-24310789 None:intergenic 30.0%
! TCTCCTTAACTAGTTTCTAA+TGG - chr6_2:24310774-24310793 None:intergenic 30.0%
ATATAGTTATATACTCCCTC+TGG + chr6_2:24311212-24311231 Msa0913480:intron 30.0%
AAGAAACATAGGTCAACAAA+AGG + chr6_2:24311245-24311264 Msa0913480:intron 30.0%
GATGTATCTGGTTAAGAATT+TGG + chr6_2:24311269-24311288 Msa0913480:intron 30.0%
! TCAACAACAGTTGATGTATT+TGG - chr6_2:24311296-24311315 None:intergenic 30.0%
CAGAATGAGTTAGATTATTG+TGG + chr6_2:24311537-24311556 Msa0913480:intron 30.0%
!! TGGCTGATTTTCACAATAAT+CGG - chr6_2:24311703-24311722 None:intergenic 30.0%
ACAAACCAATAGACAAGAAT+AGG - chr6_2:24311892-24311911 None:intergenic 30.0%
TTTGAACCTTTAGATTTCAG+GGG + chr6_2:24312129-24312148 Msa0913480:three_prime_UTR 30.0%
GGACAAATACAGATTTACAA+GGG - chr6_2:24312174-24312193 None:intergenic 30.0%
TGGACAAATACAGATTTACA+AGG - chr6_2:24312175-24312194 None:intergenic 30.0%
! GTGTTCTAAATTTCTTCAAG+GGG + chr6_2:24312267-24312286 Msa0913480:three_prime_UTR 30.0%
! TGTTCTAAATTTCTTCAAGG+GGG + chr6_2:24312268-24312287 Msa0913480:three_prime_UTR 30.0%
!!! TGTTTGATTCGGCTTTTAAG+GGG - chr6_2:24305621-24305640 None:intergenic 35.0%
!!! GTTGTTTGATTCGGCTTTTA+AGG - chr6_2:24305623-24305642 None:intergenic 35.0%
!! ATGAGGGTTGTTGTTTGATT+CGG - chr6_2:24305632-24305651 None:intergenic 35.0%
AGAAAGCTTCTGATGATTCA+TGG - chr6_2:24305796-24305815 None:intergenic 35.0%
TTCAAGCCATGAAGCTATTA+GGG + chr6_2:24306049-24306068 Msa0913480:intron 35.0%
TATCAACCCTAATAGCTTCA+TGG - chr6_2:24306058-24306077 None:intergenic 35.0%
! GTTAGGCTGGATATTTTATG+CGG + chr6_2:24306201-24306220 Msa0913480:intron 35.0%
CTAGGTCTTACAAAGTCTTA+CGG - chr6_2:24306377-24306396 None:intergenic 35.0%
TTGATATTAGCAGTTGAGCT+AGG - chr6_2:24306620-24306639 None:intergenic 35.0%
! GATAGGTTAGAAGTTTTTCG+TGG + chr6_2:24306644-24306663 Msa0913480:intron 35.0%
! AGAAGTTTTTCGTGGTTACT+CGG + chr6_2:24306652-24306671 Msa0913480:intron 35.0%
AAAATCAGATACAACTGAGG+GGG - chr6_2:24306692-24306711 None:intergenic 35.0%
TTGTTAAAACCTAGCTCGAT+AGG + chr6_2:24306888-24306907 Msa0913480:intron 35.0%
AGTGTATTGCAGAACAATAG+CGG + chr6_2:24307208-24307227 Msa0913480:intron 35.0%
GCTACATTGTTGTAGTAGTA+TGG - chr6_2:24307375-24307394 None:intergenic 35.0%
!! TACAAAGTATTGTCAGGTAG+CGG + chr6_2:24307423-24307442 Msa0913480:intron 35.0%
CTGATATTCAACGTTAAGCT+AGG - chr6_2:24307607-24307626 None:intergenic 35.0%
! CTGTGTGTATGTGAGTTTTA+AGG + chr6_2:24307681-24307700 Msa0913480:intron 35.0%
!!! TGTGTATGTGAGTTTTAAGG+TGG + chr6_2:24307684-24307703 Msa0913480:intron 35.0%
! GGTAGGCTGAATATTTTATG+TGG + chr6_2:24307915-24307934 Msa0913480:intron 35.0%
CCACTATGAAATAGTGGTAT+AGG - chr6_2:24308216-24308235 None:intergenic 35.0%
CCTATACCACTATTTCATAG+TGG + chr6_2:24308213-24308232 Msa0913480:intron 35.0%
! CGACATTAGGATTGATTCTT+TGG + chr6_2:24308372-24308391 Msa0913480:intron 35.0%
! TCTTTTGCAACATTGTGCTA+TGG + chr6_2:24308421-24308440 Msa0913480:intron 35.0%
!! AGACGAGAACAATTTGTTGA+AGG + chr6_2:24308496-24308515 Msa0913480:intron 35.0%
! CACCTTTTGTGTAGCTTAAT+TGG + chr6_2:24308712-24308731 Msa0913480:intron 35.0%
! GAAAGTTTGGAATGGAGAAA+AGG + chr6_2:24308852-24308871 Msa0913480:intron 35.0%
GTGGATGTTCTAATGATATC+AGG + chr6_2:24309175-24309194 Msa0913480:intron 35.0%
TGGATTTGGAAACAAGAAGA+AGG + chr6_2:24309212-24309231 Msa0913480:CDS 35.0%
ATTTGGAAACAAGAAGAAGG+AGG + chr6_2:24309215-24309234 Msa0913480:CDS 35.0%
TTTGGAAACAAGAAGAAGGA+GGG + chr6_2:24309216-24309235 Msa0913480:CDS 35.0%
TTATGCATGCTTCTTCTGAT+TGG + chr6_2:24309314-24309333 Msa0913480:intron 35.0%
ATGCTTCTTCTGATTGGAAA+TGG + chr6_2:24309320-24309339 Msa0913480:intron 35.0%
! ACATATACGTATAGTACTGG+TGG + chr6_2:24309376-24309395 Msa0913480:intron 35.0%
!! CATATACGTATAGTACTGGT+GGG + chr6_2:24309377-24309396 Msa0913480:intron 35.0%
! GTTTCATTGATTGTGCACAA+GGG - chr6_2:24309422-24309441 None:intergenic 35.0%
! TGTTTCATTGATTGTGCACA+AGG - chr6_2:24309423-24309442 None:intergenic 35.0%
GGCAATAGTCTATTACCATA+TGG - chr6_2:24309673-24309692 None:intergenic 35.0%
ATAGACTATTGCCGTGATTA+CGG + chr6_2:24309680-24309699 Msa0913480:intron 35.0%
AACCACTTGACAACCAAAAA+GGG - chr6_2:24309716-24309735 None:intergenic 35.0%
CAGAATAACAGGTCACATTA+GGG - chr6_2:24309747-24309766 None:intergenic 35.0%
ACAGAATAACAGGTCACATT+AGG - chr6_2:24309748-24309767 None:intergenic 35.0%
TTGGAAGTTATCCTTTCTTG+TGG + chr6_2:24309961-24309980 Msa0913480:intron 35.0%
TGGAAGTTATCCTTTCTTGT+GGG + chr6_2:24309962-24309981 Msa0913480:intron 35.0%
AGATGGTACAAATTGTCTGA+GGG + chr6_2:24309989-24310008 Msa0913480:intron 35.0%
! GGTGAACAGTAAAGAGTATA+TGG + chr6_2:24310015-24310034 Msa0913480:intron 35.0%
AGAACAAAGGTAGAAACAAG+AGG - chr6_2:24310172-24310191 None:intergenic 35.0%
ATAGTAACAAGAGGTTGCAA+TGG - chr6_2:24310219-24310238 None:intergenic 35.0%
AGCCATACCATATAGCTAAA+TGG - chr6_2:24310255-24310274 None:intergenic 35.0%
TTAGCTATATGGTATGGCTT+AGG + chr6_2:24310256-24310275 Msa0913480:intron 35.0%
TCACAACAAGAAGAAGAACA+TGG - chr6_2:24310459-24310478 None:intergenic 35.0%
AAATTTCTCCATTTGTTCCG+CGG + chr6_2:24310494-24310513 Msa0913480:intron 35.0%
!!! TCTCATTTTTTAGATCTCCG+CGG - chr6_2:24310514-24310533 None:intergenic 35.0%
ATGATCATTGCCATCAACAA+TGG - chr6_2:24310572-24310591 None:intergenic 35.0%
! CCTTAACTAGTTTCTAATGG+AGG - chr6_2:24310771-24310790 None:intergenic 35.0%
CCTCCATTAGAAACTAGTTA+AGG + chr6_2:24310768-24310787 Msa0913480:intron 35.0%
GACAGGAACAAGACAATTAT+GGG - chr6_2:24310828-24310847 None:intergenic 35.0%
TGACAGGAACAAGACAATTA+TGG - chr6_2:24310829-24310848 None:intergenic 35.0%
TGTAATCAAATCCTGGTTGT+TGG - chr6_2:24310950-24310969 None:intergenic 35.0%
GATAAGTATCTATGCACTTG+AGG + chr6_2:24310973-24310992 Msa0913480:intron 35.0%
GTCCTATACAGAAGAAACAT+AGG + chr6_2:24311234-24311253 Msa0913480:intron 35.0%
GACCTATGTTTCTTCTGTAT+AGG - chr6_2:24311239-24311258 None:intergenic 35.0%
TCAACAAAAGGTGATGTATC+TGG + chr6_2:24311257-24311276 Msa0913480:intron 35.0%
TCTCTTATAAATATGACCGG+AGG + chr6_2:24311324-24311343 Msa0913480:intron 35.0%
TGAAAATCAGCCAAAGAACT+CGG + chr6_2:24311710-24311729 Msa0913480:CDS 35.0%
TTTGAAAACACCGAGTTCTT+TGG - chr6_2:24311723-24311742 None:intergenic 35.0%
! TCAGCTTTATCAAATTGGTG+AGG + chr6_2:24311773-24311792 Msa0913480:CDS 35.0%
! CAGCTTTATCAAATTGGTGA+GGG + chr6_2:24311774-24311793 Msa0913480:CDS 35.0%
TTCCAATAATGATTCTGCCA+TGG + chr6_2:24311848-24311867 Msa0913480:CDS 35.0%
ATCCATGGCAGAATCATTAT+TGG - chr6_2:24311853-24311872 None:intergenic 35.0%
CTAGTCCTATTCTTGTCTAT+TGG + chr6_2:24311884-24311903 Msa0913480:exon 35.0%
ATCGTGCAAGAAATGATAAG+AGG + chr6_2:24312006-24312025 Msa0913480:three_prime_UTR 35.0%
TCGTGCAAGAAATGATAAGA+GGG + chr6_2:24312007-24312026 Msa0913480:three_prime_UTR 35.0%
CGCATTGAAAAACTTTACAG+AGG - chr6_2:24312103-24312122 None:intergenic 35.0%
AACAACTGTAAATCGCCATA+TGG - chr6_2:24312208-24312227 None:intergenic 35.0%
!!! GTTTGATTCGGCTTTTAAGG+GGG - chr6_2:24305620-24305639 None:intergenic 40.0%
CTGAGAAAGAGAATTAGCAG+CGG - chr6_2:24305760-24305779 None:intergenic 40.0%
! CAGAAGCTTTCTTTTCATGC+TGG + chr6_2:24305804-24305823 Msa0913480:CDS 40.0%
AGGAGAGAGAGAAAGAGATT+TGG - chr6_2:24305857-24305876 None:intergenic 40.0%
ATAGCTTCATGGCTTGAACT+AGG - chr6_2:24306047-24306066 None:intergenic 40.0%
GTTCAAGCCATGAAGCTATT+AGG + chr6_2:24306048-24306067 Msa0913480:intron 40.0%
AACTCTATGAAGCACGGATA+CGG - chr6_2:24306160-24306179 None:intergenic 40.0%
CACATGAACTCTATGAAGCA+CGG - chr6_2:24306166-24306185 None:intergenic 40.0%
TAAAACTCCCACACACGAAA+GGG - chr6_2:24306251-24306270 None:intergenic 40.0%
TTAAAACTCCCACACACGAA+AGG - chr6_2:24306252-24306271 None:intergenic 40.0%
! TTTCGTGTGTGGGAGTTTTA+AGG + chr6_2:24306251-24306270 Msa0913480:intron 40.0%
TGTGCTTCATAGCTTGAACT+AGG - chr6_2:24306395-24306414 None:intergenic 40.0%
TCCTTGTATTAGACGTGTTC+TGG + chr6_2:24306420-24306439 Msa0913480:intron 40.0%
ACCAGAACACGTCTAATACA+AGG - chr6_2:24306424-24306443 None:intergenic 40.0%
!!! TGATTTTGGTGTTGTTGGCT+TGG + chr6_2:24306748-24306767 Msa0913480:intron 40.0%
GGAATCCCGAAATTCAAATC+CGG - chr6_2:24306954-24306973 None:intergenic 40.0%
CCAACTCTTCTCTACAACAT+GGG - chr6_2:24307048-24307067 None:intergenic 40.0%
ACCAACTCTTCTCTACAACA+TGG - chr6_2:24307049-24307068 None:intergenic 40.0%
ATGTTGTAGAGAAGAGTTGG+TGG + chr6_2:24307048-24307067 Msa0913480:intron 40.0%
!! CGGAAGTGTTGTTAAATAGC+AGG + chr6_2:24307131-24307150 Msa0913480:intron 40.0%
GATAGTGTAGCCATACTGTA+TGG - chr6_2:24307167-24307186 None:intergenic 40.0%
CTCATGTTGTAGAGAAGAGT+TGG + chr6_2:24308039-24308058 Msa0913480:intron 40.0%
ATGTTGTAGAGAAGAGTTGG+TGG + chr6_2:24307048-24307067 Msa0913480:intron 40.0%
! TGTTGTAGAGAAGAGTTGGT+GGG + chr6_2:24307049-24307068 Msa0913480:intron 40.0%
!! ATAAAGTACCGGCTTTGTAG+CGG + chr6_2:24308126-24308145 Msa0913480:intron 40.0%
TATCTGCGATTGACGACATT+AGG + chr6_2:24308359-24308378 Msa0913480:intron 40.0%
TGCAACATTGTGCTATGGTA+TGG + chr6_2:24308426-24308445 Msa0913480:intron 40.0%
TTGACTGCTTATTCAGTTCG+TGG + chr6_2:24308667-24308686 Msa0913480:intron 40.0%
TGGAATGGAGAAAAGGGATT+TGG + chr6_2:24308859-24308878 Msa0913480:intron 40.0%
GGAATGGAGAAAAGGGATTT+GGG + chr6_2:24308860-24308879 Msa0913480:intron 40.0%
CTTCTTCTGATTGGAAATGG+AGG + chr6_2:24309323-24309342 Msa0913480:intron 40.0%
AGAGAGATTGACTGCAACAA+AGG + chr6_2:24309454-24309473 Msa0913480:intron 40.0%
TAGACTATTGCCGTGATTAC+GGG + chr6_2:24309681-24309700 Msa0913480:intron 40.0%
CAACCACTTGACAACCAAAA+AGG - chr6_2:24309717-24309736 None:intergenic 40.0%
!! TTTTGGTTGTCAAGTGGTTG+TGG + chr6_2:24309717-24309736 Msa0913480:intron 40.0%
GGATGGCTAAAAGTTGAAGT+GGG + chr6_2:24309809-24309828 Msa0913480:intron 40.0%
GAGATGGTACAAATTGTCTG+AGG + chr6_2:24309988-24310007 Msa0913480:intron 40.0%
!!! AGTACTAGTGTTTTCAGGTG+AGG - chr6_2:24310127-24310146 None:intergenic 40.0%
TGTACACGATCCATTGTTGA+TGG + chr6_2:24310559-24310578 Msa0913480:intron 40.0%
GAACACATGTCACACAACTA+GGG - chr6_2:24310712-24310731 None:intergenic 40.0%
TGAACACATGTCACACAACT+AGG - chr6_2:24310713-24310732 None:intergenic 40.0%
AACTAGATACCACTCGATGT+GGG + chr6_2:24310793-24310812 Msa0913480:intron 40.0%
! TTGTCTTGTTCCTGTCATAG+CGG + chr6_2:24310832-24310851 Msa0913480:intron 40.0%
!! TTTTTGGTCAGCCCATTTGT+AGG + chr6_2:24310907-24310926 Msa0913480:intron 40.0%
AGAAAGGGCTACCTACAAAT+GGG - chr6_2:24310921-24310940 None:intergenic 40.0%
AAGAAAGGGCTACCTACAAA+TGG - chr6_2:24310922-24310941 None:intergenic 40.0%
! GGTTGTTGGTGTCTAAGAAA+GGG - chr6_2:24310936-24310955 None:intergenic 40.0%
! TGGTTGTTGGTGTCTAAGAA+AGG - chr6_2:24310937-24310956 None:intergenic 40.0%
TTTCTTAGACACCAACAACC+AGG + chr6_2:24310936-24310955 Msa0913480:intron 40.0%
TTCTTCTGTATAGGACCAGA+GGG - chr6_2:24311230-24311249 None:intergenic 40.0%
TTTCTTCTGTATAGGACCAG+AGG - chr6_2:24311231-24311250 None:intergenic 40.0%
CTTTATCAAATTGGTGAGGG+TGG + chr6_2:24311777-24311796 Msa0913480:CDS 40.0%
! TTGCAGTTTTTGCAGAAGAC+AGG - chr6_2:24311935-24311954 None:intergenic 40.0%
CAAGGAATTGTGATGGTTGT+TGG - chr6_2:24311964-24311983 None:intergenic 40.0%
AACCATCACAATTCCTTGTC+TGG + chr6_2:24311966-24311985 Msa0913480:three_prime_UTR 40.0%
ATCCAGACAAGGAATTGTGA+TGG - chr6_2:24311971-24311990 None:intergenic 40.0%
TGCAAGAAATGATAAGAGGG+TGG + chr6_2:24312010-24312029 Msa0913480:three_prime_UTR 40.0%
AAGCAACCCCTGAAATCTAA+AGG - chr6_2:24312138-24312157 None:intergenic 40.0%
GTCCACAGATTCTATCCATA+TGG + chr6_2:24312190-24312209 Msa0913480:three_prime_UTR 40.0%
GGGGAGATTATGGAAAGAGA+GGG - chr6_2:24305601-24305620 None:intergenic 45.0%
!! GGCTTTTAAGGGGGAGATTA+TGG - chr6_2:24305611-24305630 None:intergenic 45.0%
CGTTTCTTGGCCATTGGAAT+CGG - chr6_2:24305678-24305697 None:intergenic 45.0%
AGAAAGAGAATTAGCAGCGG+TGG - chr6_2:24305757-24305776 None:intergenic 45.0%
CTAAACTAACCCACCGAAAC+TGG - chr6_2:24306804-24306823 None:intergenic 45.0%
TCAGTATTGCCTATCGAGCT+AGG - chr6_2:24306900-24306919 None:intergenic 45.0%
ACCTTAAACTCACATCCGAG+CGG - chr6_2:24306976-24306995 None:intergenic 45.0%
CCCATGTTGTAGAGAAGAGT+TGG + chr6_2:24307045-24307064 Msa0913480:intron 45.0%
TGGTTACGCGAGTTCGAATT+TGG + chr6_2:24307651-24307670 Msa0913480:intron 45.0%
GGTTACGCGAGTTCGAATTT+GGG + chr6_2:24307652-24307671 Msa0913480:intron 45.0%
GGATACTTGGGTTTGAACTC+AGG + chr6_2:24307936-24307955 Msa0913480:intron 45.0%
TCCAAATTCCGCTACAAAGC+CGG - chr6_2:24308137-24308156 None:intergenic 45.0%
! TTGTCAGATAGCGGCTATAG+TGG + chr6_2:24308286-24308305 Msa0913480:intron 45.0%
ATGGAGAAAAGGGATTTGGG+AGG + chr6_2:24308863-24308882 Msa0913480:intron 45.0%
AGAAAAGGGATTTGGGAGGA+GGG + chr6_2:24308867-24308886 Msa0913480:intron 45.0%
ATGAAGCAGCTTTGCAAAGC+TGG + chr6_2:24309528-24309547 Msa0913480:intron 45.0%
!!! TGCCCTTTTTGGTTGTCAAG+TGG + chr6_2:24309711-24309730 Msa0913480:intron 45.0%
GGGATGGCTAAAAGTTGAAG+TGG + chr6_2:24309808-24309827 Msa0913480:intron 45.0%
GTACAAATTGTCTGAGGGAC+TGG + chr6_2:24309994-24310013 Msa0913480:intron 45.0%
ATCTCCTGAAAACACTCGCT+TGG + chr6_2:24310055-24310074 Msa0913480:intron 45.0%
! CATACCAAGCGAGTGTTTTC+AGG - chr6_2:24310062-24310081 None:intergenic 45.0%
TACTTATTGATCTGCGCCCA+AGG + chr6_2:24310329-24310348 Msa0913480:intron 45.0%
TTAGATCTCCGCGGAACAAA+TGG - chr6_2:24310505-24310524 None:intergenic 45.0%
GAACTAGATACCACTCGATG+TGG + chr6_2:24310792-24310811 Msa0913480:intron 45.0%
AGTCGCGAAACATCAACTCT+CGG - chr6_2:24310861-24310880 None:intergenic 45.0%
!! CGGTGTTTCATTCGGGTTTT+TGG + chr6_2:24310891-24310910 Msa0913480:intron 45.0%
ACTTCTGGCCAAACAATAGC+TGG + chr6_2:24311657-24311676 Msa0913480:CDS 45.0%
CTTCTGGCCAAACAATAGCT+GGG + chr6_2:24311658-24311677 Msa0913480:CDS 45.0%
TTCTGGCCAAACAATAGCTG+GGG + chr6_2:24311659-24311678 Msa0913480:CDS 45.0%
GCTGAAGATTTCGACGAACA+GGG - chr6_2:24311758-24311777 None:intergenic 45.0%
AGCTGAAGATTTCGACGAAC+AGG - chr6_2:24311759-24311778 None:intergenic 45.0%
CTAGTCTGCATGCATATCCA+TGG - chr6_2:24311868-24311887 None:intergenic 45.0%
AAGACTCCAAACCAATCGCT+TGG - chr6_2:24312074-24312093 None:intergenic 45.0%
CGCCATATGGATAGAATCTG+TGG - chr6_2:24312195-24312214 None:intergenic 45.0%
CGATTTACAGTTGTTGACGC+CGG + chr6_2:24312213-24312232 Msa0913480:three_prime_UTR 45.0%
!!! AATAATTTCTTTTAAAAATT+TGG - chr6_2:24310363-24310382 None:intergenic 5.0%
GGGGGAGATTATGGAAAGAG+AGG - chr6_2:24305602-24305621 None:intergenic 50.0%
TTCTTGGCCATTGGAATCGG+CGG - chr6_2:24305675-24305694 None:intergenic 50.0%
GACTTGCGTTTCTTGGCCAT+TGG - chr6_2:24305684-24305703 None:intergenic 50.0%
CTAGTCTCGACGAAGTCGAT+CGG + chr6_2:24305712-24305731 Msa0913480:CDS 50.0%
! GGTGGAGAAGGAAGCATACA+TGG - chr6_2:24305739-24305758 None:intergenic 50.0%
AGAATTAGCAGCGGTGGAGA+AGG - chr6_2:24305751-24305770 None:intergenic 50.0%
CGGTTACTCGAGTTTGAACC+CGG + chr6_2:24306221-24306240 Msa0913480:intron 50.0%
CACACACGAAAGGGAATACC+GGG - chr6_2:24306242-24306261 None:intergenic 50.0%
CCACACACGAAAGGGAATAC+CGG - chr6_2:24306243-24306262 None:intergenic 50.0%
CGGTATTCCCTTTCGTGTGT+GGG + chr6_2:24306241-24306260 Msa0913480:intron 50.0%
!!! CGTGTGTGGGAGTTTTAAGG+TGG + chr6_2:24306254-24306273 Msa0913480:intron 50.0%
TGGACTCCTCTCAATGTCTC+AGG + chr6_2:24306768-24306787 Msa0913480:intron 50.0%
TGAATTTCGGGATTCCCGCT+CGG + chr6_2:24306958-24306977 Msa0913480:intron 50.0%
CCTTAAACTCACATCCGAGC+GGG - chr6_2:24306975-24306994 None:intergenic 50.0%
GCTCGGATGTGAGTTTAAGG+TGG + chr6_2:24306975-24306994 Msa0913480:intron 50.0%
TATAGCGGCGCCATACAGTA+TGG + chr6_2:24307154-24307173 Msa0913480:intron 50.0%
! TATTGTCAGGTAGCGGCTAG+TGG + chr6_2:24307430-24307449 Msa0913480:intron 50.0%
! ACCGGCTTTGTAGCGGAATT+TGG + chr6_2:24308133-24308152 Msa0913480:intron 50.0%
GAGAAAAGGGATTTGGGAGG+AGG + chr6_2:24308866-24308885 Msa0913480:intron 50.0%
! GTCATGGACTGCTTGTGTTC+TGG + chr6_2:24309071-24309090 Msa0913480:intron 50.0%
AACAAGAAGAAGGAGGGTCG+AGG + chr6_2:24309222-24309241 Msa0913480:CDS 50.0%
ACAAGAAGAAGGAGGGTCGA+GGG + chr6_2:24309223-24309242 Msa0913480:CDS 50.0%
!! AACCACTTTGGTGGCGGTAT+CGG - chr6_2:24309639-24309658 None:intergenic 50.0%
ATCCACAACCACTTTGGTGG+CGG - chr6_2:24309645-24309664 None:intergenic 50.0%
!! GAAGGCATCCACAACCACTT+TGG - chr6_2:24309651-24309670 None:intergenic 50.0%
GGTTGTGGATGCCTTCCATA+TGG + chr6_2:24309655-24309674 Msa0913480:intron 50.0%
TATTGCCGTGATTACGGGCA+TGG + chr6_2:24309686-24309705 Msa0913480:intron 50.0%
GCAAACCATGCCCGTAATCA+CGG - chr6_2:24309694-24309713 None:intergenic 50.0%
CCATCTCAAGCCCACAAGAA+AGG - chr6_2:24309975-24309994 None:intergenic 50.0%
CCTTTCTTGTGGGCTTGAGA+TGG + chr6_2:24309972-24309991 Msa0913480:intron 50.0%
ATGCTAAGTCCCACATCGAG+TGG - chr6_2:24310805-24310824 None:intergenic 50.0%
TCGCGAAACATCAACTCTCG+GGG - chr6_2:24310859-24310878 None:intergenic 50.0%
GTCGCGAAACATCAACTCTC+GGG - chr6_2:24310860-24310879 None:intergenic 50.0%
ATGTTTCGCGACTGCACTCT+CGG + chr6_2:24310868-24310887 Msa0913480:intron 50.0%
ACTCTCGGCGGTGTTTCATT+CGG + chr6_2:24310883-24310902 Msa0913480:intron 50.0%
! GAACTGGTGACAGGTGTCAT+TGG - chr6_2:24311615-24311634 None:intergenic 50.0%
ATGACACCTGTCACCAGTTC+AGG + chr6_2:24311615-24311634 Msa0913480:CDS 50.0%
AGTGACTGGAAAGCCTGAAC+TGG - chr6_2:24311631-24311650 None:intergenic 50.0%
TCAGGCTTTCCAGTCACTTC+AGG + chr6_2:24311633-24311652 Msa0913480:CDS 50.0%
CCAGAAGTTCCTGAAGTGAC+TGG - chr6_2:24311645-24311664 None:intergenic 50.0%
CCAGTCACTTCAGGAACTTC+TGG + chr6_2:24311642-24311661 Msa0913480:CDS 50.0%
AGAGCAAGCGAATCCAGACA+AGG - chr6_2:24311982-24312001 None:intergenic 50.0%
GTCTGGATTCGCTTGCTCTT+TGG + chr6_2:24311983-24312002 Msa0913480:three_prime_UTR 50.0%
CCATTGGAATCGGCGGAGAT+CGG - chr6_2:24305668-24305687 None:intergenic 55.0%
GACTTCGTCGAGACTAGACG+CGG - chr6_2:24305709-24305728 None:intergenic 55.0%
TGAAGCACGGATACGGAGAC+AGG - chr6_2:24306153-24306172 None:intergenic 55.0%
CCGGTATTCCCTTTCGTGTG+TGG + chr6_2:24306240-24306259 Msa0913480:intron 55.0%
GGGGAACCTGAGACATTGAG+AGG - chr6_2:24306777-24306796 None:intergenic 55.0%
AGGTTCCCCAGTGCCAGTTT+CGG + chr6_2:24306788-24306807 Msa0913480:intron 55.0%
AACCCACCGAAACTGGCACT+GGG - chr6_2:24306797-24306816 None:intergenic 55.0%
TAACCCACCGAAACTGGCAC+TGG - chr6_2:24306798-24306817 None:intergenic 55.0%
CCCGCTCGGATGTGAGTTTA+AGG + chr6_2:24306972-24306991 Msa0913480:intron 55.0%
AAGGGATTTGGGAGGAGGGA+AGG + chr6_2:24308871-24308890 Msa0913480:intron 55.0%
ATTTGGGAGGAGGGAAGGAG+AGG + chr6_2:24308876-24308895 Msa0913480:intron 55.0%
TTTGGGAGGAGGGAAGGAGA+GGG + chr6_2:24308877-24308896 Msa0913480:intron 55.0%
TACCGCCACCAAAGTGGTTG+TGG + chr6_2:24309640-24309659 Msa0913480:intron 55.0%
GGCATCCACAACCACTTTGG+TGG - chr6_2:24309648-24309667 None:intergenic 55.0%
!! CGGGCATGGTTTGCCCTTTT+TGG + chr6_2:24309700-24309719 Msa0913480:intron 55.0%
CGCGAAACATCAACTCTCGG+GGG - chr6_2:24310858-24310877 None:intergenic 55.0%
CTCTCGGCGGTGTTTCATTC+GGG + chr6_2:24310884-24310903 Msa0913480:intron 55.0%
!! GTGACAGGTGTCATTGGCTG+TGG - chr6_2:24311609-24311628 None:intergenic 55.0%
GGAAAGCCTGAACTGGTGAC+AGG - chr6_2:24311624-24311643 None:intergenic 55.0%
GCTTACGTCGACCAAGCGAT+TGG + chr6_2:24312060-24312079 Msa0913480:three_prime_UTR 55.0%
! CGTCGACCAAGCGATTGGTT+TGG + chr6_2:24312065-24312084 Msa0913480:three_prime_UTR 55.0%
!! CGGTGGTGGAGGTGGAATGA+GGG - chr6_2:24305648-24305667 None:intergenic 60.0%
!! TCGGTGGTGGAGGTGGAATG+AGG - chr6_2:24305649-24305668 None:intergenic 60.0%
TTGGAATCGGCGGAGATCGG+TGG - chr6_2:24305665-24305684 None:intergenic 60.0%
!! CCGATCTCCGCCGATTCCAA+TGG + chr6_2:24305665-24305684 Msa0913480:exon 60.0%
TTCGTCGAGACTAGACGCGG+CGG - chr6_2:24305706-24305725 None:intergenic 60.0%
TTCCCCAGTGCCAGTTTCGG+TGG + chr6_2:24306791-24306810 Msa0913480:intron 60.0%
TCCCCAGTGCCAGTTTCGGT+GGG + chr6_2:24306792-24306811 Msa0913480:intron 60.0%
ACCCACCGAAACTGGCACTG+GGG - chr6_2:24306796-24306815 None:intergenic 60.0%
ATGGAGGGCTCCCAAGTGCT+TGG - chr6_2:24310755-24310774 None:intergenic 60.0%
TTTCGCGACTGCACTCTCGG+CGG + chr6_2:24310871-24310890 Msa0913480:intron 60.0%
!! TGGTTTTGCGGTGGCGCTCT+GGG - chr6_2:24311582-24311601 None:intergenic 60.0%
!!! TGTGGCTGCTGGTTTTGCGG+TGG - chr6_2:24311591-24311610 None:intergenic 60.0%
!!! GGCTGTGGCTGCTGGTTTTG+CGG - chr6_2:24311594-24311613 None:intergenic 60.0%
! GTGTCATTGGCTGTGGCTGC+TGG - chr6_2:24311602-24311621 None:intergenic 60.0%
GGCCAAACAATAGCTGGGGC+CGG + chr6_2:24311663-24311682 Msa0913480:CDS 60.0%
GCCAAACAATAGCTGGGGCC+GGG + chr6_2:24311664-24311683 Msa0913480:CDS 60.0%
ATCGGAGCGTAGTCCTTGCC+CGG - chr6_2:24311685-24311704 None:intergenic 60.0%
GAATCGGCGGAGATCGGTGG+TGG - chr6_2:24305662-24305681 None:intergenic 65.0%
! CGCGGCGGACTTGCGTTTCT+TGG - chr6_2:24305691-24305710 None:intergenic 65.0%
GGAGGAGGGAAGGAGAGGGA+AGG + chr6_2:24308881-24308900 Msa0913480:intron 65.0%
GGCCGATACCGCCACCAAAG+TGG + chr6_2:24309634-24309653 Msa0913480:intron 65.0%
! GGCGCTCTGGGTGACATGGA+TGG - chr6_2:24311570-24311589 None:intergenic 65.0%
!!! CTGGTTTTGCGGTGGCGCTC+TGG - chr6_2:24311583-24311602 None:intergenic 65.0%
GCCCGGCCCCAGCTATTGTT+TGG - chr6_2:24311668-24311687 None:intergenic 65.0%
ACAATAGCTGGGGCCGGGCA+AGG + chr6_2:24311669-24311688 Msa0913480:CDS 65.0%
!! GCGGAGATCGGTGGTGGAGG+TGG - chr6_2:24305656-24305675 None:intergenic 70.0%
! TCGGCGGAGATCGGTGGTGG+AGG - chr6_2:24305659-24305678 None:intergenic 70.0%
CTCTCGGGGGCCGCTATGAC+AGG - chr6_2:24310845-24310864 None:intergenic 70.0%
! CGGTGGCGCTCTGGGTGACA+TGG - chr6_2:24311574-24311593 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 24305594 24312406 24305594 ID=Msa0913480;Name=Msa0913480
chr6_2 mRNA 24305594 24312406 24305594 ID=Msa0913480-mRNA-1;Parent=Msa0913480;Name=Msa0913480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=90|1|1|1|1|1|3|519|195
chr6_2 exon 24305594 24305842 24305594 ID=Msa0913480-mRNA-1:exon:4759;Parent=Msa0913480-mRNA-1
chr6_2 exon 24309197 24309277 24309197 ID=Msa0913480-mRNA-1:exon:4760;Parent=Msa0913480-mRNA-1
chr6_2 exon 24311540 24312406 24311540 ID=Msa0913480-mRNA-1:exon:4761;Parent=Msa0913480-mRNA-1
chr6_2 five_prime_UTR 24305594 24305683 24305594 ID=Msa0913480-mRNA-1:five_prime_utr;Parent=Msa0913480-mRNA-1
chr6_2 CDS 24305684 24305842 24305684 ID=Msa0913480-mRNA-1:cds;Parent=Msa0913480-mRNA-1
chr6_2 CDS 24309197 24309277 24309197 ID=Msa0913480-mRNA-1:cds;Parent=Msa0913480-mRNA-1
chr6_2 CDS 24311540 24311887 24311540 ID=Msa0913480-mRNA-1:cds;Parent=Msa0913480-mRNA-1
chr6_2 three_prime_UTR 24311888 24312406 24311888 ID=Msa0913480-mRNA-1:three_prime_utr;Parent=Msa0913480-mRNA-1
Gene Sequence

>Msa0913480

ATGGCCAAGAAACGCAAGTCCGCCGCGTCTAGTCTCGACGAAGTCGATCGGACCATGTATGCTTCCTTCTCCACCGCTGCTAATTCTCTTTCTCAGCTTTACTCTCATGCCATGAATCATCAGAAGCTTTCTTTTCATGCTGGTGAACGTAACGCTCTTGAAAAACTTTATCAGTGGATTTGGAAACAAGAAGAAGGAGGGTCGAGGGTTGCAACAGTTGATGTAGTTAACTACATTCAGAATGAGTTAGATTATTGTGGAGAAGAGCCATCCATGTCACCCAGAGCGCCACCGCAAAACCAGCAGCCACAGCCAATGACACCTGTCACCAGTTCAGGCTTTCCAGTCACTTCAGGAACTTCTGGCCAAACAATAGCTGGGGCCGGGCAAGGACTACGCTCCGATTATTGTGAAAATCAGCCAAAGAACTCGGTGTTTTCAAATGCATTATCAAGCCCTGTTCGTCGAAATCTTCAGCTTTATCAAATTGGTGAGGGTGGAAATCGCAGCTTTCTGCACAATCAAAGCAGCGAATCAAATGCAGTTAGTTCCAATAATGATTCTGCCATGGATATGCATGCAGACTAG
Protein sequence

>Msa0913480

MAKKRKSAASSLDEVDRTMYASFSTAANSLSQLYSHAMNHQKLSFHAGERNALEKLYQWIWKQEEGGSRVATVDVVNYIQNELDYCGEEPSMSPRAPPQNQQPQPMTPVTSSGFPVTSGTSGQTIAGAGQGLRSDYCENQPKNSVFSNALSSPVRRNLQLYQIGEGGNRSFLHNQSSESNAVSSNNDSAMDMHAD*