AlfalfaGEDB | Msa0619200

M. sativa cultivar zhongmu-4 / Msa0619200

KEGG: -
GO: -
PFAM: PF14372.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619200	XP_024627967.2	80.833	360	69	0	1	360	227	586	0.0	601

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619200	sp\|Q6AVI0\|RSLE2_ORYSJ	34.203	345	214	7	2	337	370	710	3.22e-58	204

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035130	Msa0619200	0.802534	5.359721e-49	-8.615850e-47
Msa0124450	Msa0619200	0.803310	3.706060e-49	-8.615850e-47
Msa0568340	Msa0619200	0.859607	3.679199e-63	-8.615850e-47
Msa0619200	Msa0658590	0.817473	3.238678e-52	-8.615850e-47
Msa0619200	Msa0703550	0.801002	1.105822e-48	-8.615850e-47
Msa0619200	Msa0704890	0.916153	2.508466e-85	-8.615850e-47
Msa0619200	Msa1071180	-0.817287	3.566370e-52	-8.615850e-47
Msa0619200	Msa1132480	0.816861	4.446279e-52	-8.615850e-47
Msa0619200	Msa1226470	0.821231	4.507126e-53	-8.615850e-47
Msa0619200	Msa1373100	0.816962	4.220159e-52	-8.615850e-47

Showing 1 to 10 of 13 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619200	MtrunA17_Chr4g0052681	81.351	370	66	1	1	367	227	596	0.0	600
Msa0619200	MtrunA17_Chr8g0383081	77.465	355	77	2	1	355	224	575	0.0	569
Msa0619200	MtrunA17_Chr8g0383041	75.462	379	86	2	1	375	227	602	0.0	565
Msa0619200	MtrunA17_Chr8g0383061	80.088	226	41	1	129	354	1	222	1.34e-122	353
Msa0619200	MtrunA17_Chr8g0383091	91.781	146	10	1	129	274	1	144	3.24e-93	275
Msa0619200	MtrunA17_Chr8g0383071	75.524	143	35	0	1	143	168	310	1.78e-74	233
Msa0619200	MtrunA17_Chr4g0053391	40.672	268	150	3	79	346	1	259	1.73e-64	206
Msa0619200	MtrunA17_Chr8g0383211	36.950	341	205	4	2	340	314	646	1.03e-62	212
Msa0619200	MtrunA17_Chr7g0263231	30.816	331	223	3	2	329	741	1068	2.30e-47	172
Msa0619200	MtrunA17_Chr1g0192041	42.857	182	103	1	30	210	60	241	1.07e-45	157

Showing 1 to 10 of 25 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0619200	AT3G42170.1	33.333	330	196	5	3	329	366	674	1.43e-52	186
Msa0619200	AT3G42170.2	33.333	330	196	5	3	329	344	652	1.45e-52	185
Msa0619200	AT1G18560.1	25.490	255	140	7	126	359	463	688	7.57e-11	64.3

Showing 1 to 3 of 3 entries

Previous1Next

Find 99 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGTTGCAACTAGTA+AGG	0.484075	4_2:+70312724	Msa0619200:CDS
AAAGTGAGAAATGAGGTACG+CGG	0.757437	4_2:-70311211	None:intergenic
AAAGTTAAAGATATCCTATT+AGG	0.333650	4_2:-70311797	None:intergenic
AACTCCAAGTCTTTATCTCA+CGG	0.512124	4_2:+70312849	Msa0619200:CDS
AAGACATGGATGTATTAGAA+TGG	0.611743	4_2:+70313078	Msa0619200:CDS
AAGGAATGCATTGAAAAGGT+TGG	0.494889	4_2:+70312237	Msa0619200:CDS
AAGTGAGAAATGAGGTACGC+GGG	0.639129	4_2:-70311210	None:intergenic
AATACCTGTACATGAGACAT+CGG	0.655981	4_2:-70311282	None:intergenic
AATGTTGAAAATTTAATACG+TGG	0.625350	4_2:-70312663	None:intergenic
AATTGGCTACCATTCCTAAT+AGG	0.389770	4_2:+70311783	Msa0619200:five_prime_UTR

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGATAGTTTAGAGACTATTC+TGG	+	chr4_2:70311448-70311467	Msa0619200:intron	30.0%
AGTCATGTCACAAGAAAAAA+TGG	+	chr4_2:70311544-70311563	Msa0619200:five_prime_UTR	30.0%
AAAAATGGAATTTGACGATG+AGG	+	chr4_2:70311559-70311578	Msa0619200:five_prime_UTR	30.0%
TCACTCATTTGTACATGAAA+GGG	+	chr4_2:70311741-70311760	Msa0619200:five_prime_UTR	30.0%
ATCTAAGCTTCAACAAGAAT+TGG	+	chr4_2:70311766-70311785	Msa0619200:five_prime_UTR	30.0%
GAATTGGAAGTTAAACAGTA+AGG	+	chr4_2:70311883-70311902	Msa0619200:five_prime_UTR	30.0%
TGATTGAACTGTTGAATGAT+TGG	+	chr4_2:70311960-70311979	Msa0619200:five_prime_UTR	30.0%
GATTGAACTGTTGAATGATT+GGG	+	chr4_2:70311961-70311980	Msa0619200:five_prime_UTR	30.0%
ATTGAACTGTTGAATGATTG+GGG	+	chr4_2:70311962-70311981	Msa0619200:five_prime_UTR	30.0%
CAACAATTGAAATCTCATCT+TGG	+	chr4_2:70312046-70312065	Msa0619200:five_prime_UTR	30.0%

Showing 1 to 10 of 153 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	70311192	70313713	70311192	ID=Msa0619200;Name=Msa0619200
chr4_2	mRNA	70311192	70313713	70311192	ID=Msa0619200-mRNA-1;Parent=Msa0619200;Name=Msa0619200-mRNA-1;_AED=0.00;_eAED=0.00;_QI=770\|1\|1\|1\|0.66\|0.5\|4\|189\|375
chr4_2	exon	70311192	70311299	70311192	ID=Msa0619200-mRNA-1:exon:20451;Parent=Msa0619200-mRNA-1
chr4_2	exon	70311536	70312881	70311536	ID=Msa0619200-mRNA-1:exon:20452;Parent=Msa0619200-mRNA-1
chr4_2	exon	70312981	70313302	70312981	ID=Msa0619200-mRNA-1:exon:20453;Parent=Msa0619200-mRNA-1
chr4_2	exon	70313403	70313713	70313403	ID=Msa0619200-mRNA-1:exon:20454;Parent=Msa0619200-mRNA-1
chr4_2	five_prime_UTR	70311192	70311299	70311192	ID=Msa0619200-mRNA-1:five_prime_utr;Parent=Msa0619200-mRNA-1
chr4_2	five_prime_UTR	70311536	70312197	70311536	ID=Msa0619200-mRNA-1:five_prime_utr;Parent=Msa0619200-mRNA-1
chr4_2	CDS	70312198	70312881	70312198	ID=Msa0619200-mRNA-1:cds;Parent=Msa0619200-mRNA-1
chr4_2	CDS	70312981	70313302	70312981	ID=Msa0619200-mRNA-1:cds;Parent=Msa0619200-mRNA-1
chr4_2	CDS	70313403	70313524	70313403	ID=Msa0619200-mRNA-1:cds;Parent=Msa0619200-mRNA-1
chr4_2	three_prime_UTR	70313525	70313713	70313525	ID=Msa0619200-mRNA-1:three_prime_utr;Parent=Msa0619200-mRNA-1

Gene Sequence

>Msa0619200

ATGTTTGTGAGGCATTCAAAGAGTAGAAGGGAGAAATTTAAGGAATGCATTGAAAAGGTTGGTGCTGTTGATAGTTCTGTTCGCTTGCATCAGGACTCGTCTATGAGTCTGAACTCAACTTATTTGATGCTTGAAAGTGCTCTTAAATATCGGCGTGTGTTTGAAAGTCTTCACTTGTATGAGGATAATTATGAGTTATGTCCTTCGGCAGAAGAGTGGAAAAGAGTAGAAAAGATTTGTGCATTCTTGTTGCCTTTTTGTGAAACTGCCAACATGATTAATGACACAACGCATCCTACTTCCAATTTGTATTTTTTGCAAGTTTGGAAAGTTGAACGTGTTCTAGTTGATACTCTGGGAGATGAAGATGAAGTTATGAAGAGAATGGCTGAAAGGATGATGAGCAAGTTTGACAAATTTTGGAATGAGTACAGTGTTGTTCTTGCATTGGGAGCGGTTCTTGACCCACGTATTAAATTTTCAACATTGGCTTATTGTTACTCAAAACTTGATGCATCAACCTGTGAAAGGAAGTTGCAACTAGTAAGGACGAAGTTGTACATGCTATTTGGCAAGTATTCTAGCCAAAGTACTTCTTCTGGCATGCAAAGTACTATTCAGGGCCAATCTTCTACCATGCCAGTGCAAAAGAACTCCAAGTCTTTATCTCACGGTTTATTCGATGAATTGAAAATGCACCATCAACAACTTGTTATTGAAGCTGGAAAATCTCAACTTGATGTTTACTTAGATGAATCAAGTTTGGATTTTCGTTGTTATGAAGACATGGATGTATTAGAATGGTGGAAGAGTAATAATAATCGATTTCCAGATCTATCAATCTTGGCTTGTGACTTGTTAAGTGTTCCCATTGCCACTGTCGCTTCTGATTTCGAGTTTTGCATGGGCGCACGCGTCTTTGAAAAGTATAAAGACCTTATGCTGCCTATGAATGTGGAAGCTAGAATTTGTACTCGCAGTTGGTTGTACAATTTTGTCAGCAATGATGAAGAGGACGATGATGATGACTTTGAAGAAATTATGAATGAAATTGACGGCGATGAAAAAATGGAGAAAGCATCAAATGATTTTGATTTTGATGATGACTGCGATGGTGGTGATGATTGA

Protein sequence

>Msa0619200

MFVRHSKSRREKFKECIEKVGAVDSSVRLHQDSSMSLNSTYLMLESALKYRRVFESLHLYEDNYELCPSAEEWKRVEKICAFLLPFCETANMINDTTHPTSNLYFLQVWKVERVLVDTLGDEDEVMKRMAERMMSKFDKFWNEYSVVLALGAVLDPRIKFSTLAYCYSKLDASTCERKLQLVRTKLYMLFGKYSSQSTSSGMQSTIQGQSSTMPVQKNSKSLSHGLFDELKMHHQQLVIEAGKSQLDVYLDESSLDFRCYEDMDVLEWWKSNNNRFPDLSILACDLLSVPIATVASDFEFCMGARVFEKYKDLMLPMNVEARICTRSWLYNFVSNDEEDDDDDFEEIMNEIDGDEKMEKASNDFDFDDDCDGGDD*