Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390730 | XP_024627967.2 | 79.352 | 586 | 121 | 0 | 1 | 586 | 1 | 586 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390730 | sp|Q6AVI0|RSLE2_ORYSJ | 32.545 | 550 | 356 | 9 | 25 | 563 | 165 | 710 | 5.89e-100 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390730 | A0A396IDQ4 | 79.027 | 596 | 122 | 1 | 1 | 593 | 1 | 596 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035130 | Msa1390730 | 0.815602 | 8.498129e-52 | -8.615850e-47 |
| Msa1373100 | Msa1390730 | 0.818044 | 2.407100e-52 | -8.615850e-47 |
| Msa1390730 | Msa1422950 | 0.817919 | 2.568755e-52 | -8.615850e-47 |
| Msa1390730 | Msa1440310 | 0.816653 | 4.950599e-52 | -8.615850e-47 |
| Msa1390730 | Msa1447180 | 0.809951 | 1.467517e-50 | -8.615850e-47 |
| Msa0619200 | Msa1390730 | 0.986281 | 2.887554e-166 | -8.615850e-47 |
| Msa0658590 | Msa1390730 | 0.830248 | 3.268736e-55 | -8.615850e-47 |
| Msa0672550 | Msa1390730 | 0.805198 | 1.498369e-49 | -8.615850e-47 |
| Msa0703550 | Msa1390730 | 0.817222 | 3.687881e-52 | -8.615850e-47 |
| Msa0704890 | Msa1390730 | 0.940198 | 3.512366e-100 | -8.615850e-47 |
| Msa0124450 | Msa1390730 | 0.816028 | 6.827882e-52 | -8.615850e-47 |
| Msa0127100 | Msa1390730 | 0.808268 | 3.367442e-50 | -8.615850e-47 |
| Msa1226470 | Msa1390730 | 0.831669 | 1.463992e-55 | -8.615850e-47 |
| Msa1265590 | Msa1390730 | 0.801669 | 8.075329e-49 | -8.615850e-47 |
| Msa0450400 | Msa1390730 | -0.811090 | 8.329862e-51 | -8.615850e-47 |
| Msa1071180 | Msa1390730 | -0.808332 | 3.262802e-50 | -8.615850e-47 |
| Msa1089450 | Msa1390730 | 0.808979 | 2.373568e-50 | -8.615850e-47 |
| Msa0317970 | Msa1390730 | 0.811623 | 6.380475e-51 | -8.615850e-47 |
| Msa1127590 | Msa1390730 | 0.816634 | 4.997531e-52 | -8.615850e-47 |
| Msa1132480 | Msa1390730 | 0.829639 | 4.600595e-55 | -8.615850e-47 |
| Msa1218450 | Msa1390730 | 0.801674 | 8.054192e-49 | -8.615850e-47 |
| Msa0531250 | Msa1390730 | 0.800911 | 1.153870e-48 | -8.615850e-47 |
| Msa0568340 | Msa1390730 | 0.859013 | 5.547833e-63 | -8.615850e-47 |
| Msa0934140 | Msa1390730 | 0.803999 | 2.666405e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390730 | MtrunA17_Chr4g0052681 | 79.027 | 596 | 122 | 1 | 1 | 593 | 1 | 596 | 0.0 | 947 |
| Msa1390730 | MtrunA17_Chr8g0383081 | 75.215 | 581 | 138 | 4 | 1 | 581 | 1 | 575 | 0.0 | 899 |
| Msa1390730 | MtrunA17_Chr8g0383041 | 70.627 | 606 | 160 | 4 | 10 | 601 | 1 | 602 | 0.0 | 844 |
| Msa1390730 | MtrunA17_Chr8g0383071 | 75.945 | 291 | 70 | 0 | 79 | 369 | 20 | 310 | 1.99e-161 | 463 |
| Msa1390730 | MtrunA17_Chr8g0383051 | 71.246 | 313 | 87 | 3 | 1 | 311 | 14 | 325 | 1.20e-157 | 454 |
| Msa1390730 | MtrunA17_Chr8g0383061 | 80.088 | 226 | 41 | 1 | 355 | 580 | 1 | 222 | 1.37e-119 | 353 |
| Msa1390730 | MtrunA17_Chr8g0383211 | 34.828 | 580 | 352 | 10 | 3 | 566 | 77 | 646 | 2.43e-100 | 319 |
| Msa1390730 | MtrunA17_Chr8g0383091 | 91.781 | 146 | 10 | 1 | 355 | 500 | 1 | 144 | 1.67e-90 | 275 |
| Msa1390730 | MtrunA17_Chr2g0308821 | 29.725 | 545 | 373 | 5 | 22 | 561 | 125 | 664 | 3.30e-84 | 276 |
| Msa1390730 | MtrunA17_Chr7g0263231 | 30.171 | 527 | 360 | 5 | 33 | 555 | 546 | 1068 | 2.80e-83 | 282 |
| Msa1390730 | MtrunA17_Chr8g0359341 | 30.991 | 555 | 361 | 7 | 8 | 557 | 171 | 708 | 2.61e-80 | 268 |
| Msa1390730 | MtrunA17_Chr8g0354631 | 29.982 | 547 | 351 | 13 | 33 | 555 | 164 | 702 | 4.31e-79 | 265 |
| Msa1390730 | MtrunA17_Chr7g0263261 | 29.870 | 539 | 368 | 6 | 21 | 555 | 477 | 1009 | 2.30e-78 | 268 |
| Msa1390730 | MtrunA17_Chr4g0003151 | 27.087 | 539 | 382 | 6 | 25 | 555 | 124 | 659 | 1.05e-76 | 257 |
| Msa1390730 | MtrunA17_Chr2g0333261 | 28.022 | 546 | 378 | 8 | 21 | 556 | 139 | 679 | 3.01e-75 | 253 |
| Msa1390730 | MtrunA17_Chr5g0402891 | 27.322 | 549 | 379 | 9 | 43 | 577 | 59 | 601 | 2.90e-67 | 230 |
| Msa1390730 | MtrunA17_Chr4g0053391 | 41.111 | 270 | 146 | 4 | 305 | 572 | 1 | 259 | 4.06e-62 | 207 |
| Msa1390730 | MtrunA17_Chr4g0052601 | 35.404 | 322 | 196 | 5 | 20 | 334 | 106 | 422 | 2.89e-55 | 193 |
| Msa1390730 | MtrunA17_Chr1g0192041 | 42.857 | 182 | 103 | 1 | 256 | 436 | 60 | 241 | 3.91e-44 | 157 |
| Msa1390730 | MtrunA17_Chr4g0062411 | 24.680 | 547 | 377 | 11 | 35 | 574 | 150 | 668 | 5.07e-37 | 146 |
| Msa1390730 | MtrunA17_Chr5g0408131 | 34.389 | 221 | 136 | 4 | 355 | 573 | 23 | 236 | 1.75e-35 | 134 |
| Msa1390730 | MtrunA17_Chr8g0383181 | 31.140 | 228 | 139 | 7 | 1 | 213 | 66 | 290 | 5.23e-25 | 105 |
| Msa1390730 | MtrunA17_Chr8g0383171 | 30.102 | 196 | 122 | 4 | 377 | 567 | 58 | 243 | 1.06e-21 | 95.5 |
| Msa1390730 | MtrunA17_Chr4g0052611 | 30.455 | 220 | 118 | 7 | 349 | 555 | 6 | 203 | 3.85e-21 | 93.2 |
| Msa1390730 | MtrunA17_Chr3g0108001 | 43.269 | 104 | 48 | 3 | 487 | 588 | 5 | 99 | 1.20e-19 | 84.7 |
| Msa1390730 | MtrunA17_Chr8g0390371 | 41.026 | 78 | 46 | 0 | 487 | 564 | 9 | 86 | 2.63e-16 | 74.3 |
| Msa1390730 | MtrunA17_Chr1g0162951 | 50.980 | 51 | 25 | 0 | 508 | 558 | 1 | 51 | 5.82e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1390730 | AT3G42170.2 | 30.930 | 527 | 338 | 7 | 33 | 555 | 148 | 652 | 4.83e-90 | 292 |
| Msa1390730 | AT3G42170.1 | 30.930 | 527 | 338 | 7 | 33 | 555 | 170 | 674 | 7.64e-90 | 292 |
| Msa1390730 | AT1G18560.1 | 24.269 | 581 | 371 | 18 | 37 | 585 | 145 | 688 | 1.63e-28 | 121 |
Find 100 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCAAGTTTGACAAATTT+TGG | 0.118977 | tig0021384:+49190 | Msa1390730:CDS |
| TCTCATCTTGGTTTGCAAAA+TGG | 0.163789 | tig0021384:+48649 | Msa1390730:CDS |
| CTCATCTTGGTTTGCAAAAT+GGG | 0.245980 | tig0021384:+48650 | Msa1390730:CDS |
| GAGTAGAAGGGAGAAATTTA+AGG | 0.250530 | tig0021384:+48810 | Msa1390730:CDS |
| ACGAAGTTGTACATGCTATT+TGG | 0.252127 | tig0021384:+49339 | Msa1390730:CDS |
| GATATGGTTTATGCACTTAC+TGG | 0.279825 | tig0021384:+50197 | Msa1390730:three_prime_UTR |
| TGGCATGCAAAGTACTATTC+AGG | 0.287867 | tig0021384:+49389 | Msa1390730:CDS |
| TGAGGCATTCAAAGAGTAGA+AGG | 0.319331 | tig0021384:+48797 | Msa1390730:CDS |
| ATGTTGGCAGTTTCACAAAA+AGG | 0.324708 | tig0021384:-49042 | None:intergenic |
| TTACTTAGATGAATCAAGTT+TGG | 0.331942 | tig0021384:+49632 | Msa1390730:CDS |
| AAAGTTAAAGATATCCTATT+AGG | 0.333650 | tig0021384:-48388 | None:intergenic |
| ATTTCCAGATCTATCAATCT+TGG | 0.351942 | tig0021384:+49713 | Msa1390730:CDS |
| ATCTAAGCTTCAACAAGAAT+TGG | 0.358923 | tig0021384:+48357 | Msa1390730:CDS |
| TCTAGCCAAAGTACTTCTTC+TGG | 0.359157 | tig0021384:+49369 | Msa1390730:CDS |
| ATTCTAGCTTCCACATTCAT+AGG | 0.364577 | tig0021384:-49834 | None:intergenic |
| CTTCAATAACAAGTTGTTGA+TGG | 0.370337 | tig0021384:-49587 | None:intergenic |
| TACAGTGTTGTTCTTGCATT+GGG | 0.376545 | tig0021384:+49219 | Msa1390730:CDS |
| TGATTGAACTGTTGAATGAT+TGG | 0.387676 | tig0021384:+48551 | Msa1390730:CDS |
| AATTGGCTACCATTCCTAAT+AGG | 0.389770 | tig0021384:+48374 | Msa1390730:CDS |
| CAACAATTGAAATCTCATCT+TGG | 0.396385 | tig0021384:+48637 | Msa1390730:CDS |
| GTAGGAGGTATAACAGCATT+TGG | 0.404852 | tig0021384:-48289 | None:intergenic |
| TATGTATGGCTGCTTGGATA+TGG | 0.407136 | tig0021384:+50181 | Msa1390730:three_prime_UTR |
| CAACAACTTGTTATTGAAGC+TGG | 0.409267 | tig0021384:+49591 | Msa1390730:CDS |
| TTTAAATTTGATTGTTGAAG+AGG | 0.417116 | tig0021384:+48720 | Msa1390730:CDS |
| GATTGAACTGTTGAATGATT+GGG | 0.421976 | tig0021384:+48552 | Msa1390730:CDS |
| TAGTTCTGTTCGCTTGCATC+AGG | 0.424044 | tig0021384:+48861 | Msa1390730:CDS |
| CTCTCGCCGCCGTCTCCTTA+CGG | 0.425085 | tig0021384:+47843 | Msa1390730:five_prime_UTR |
| GTTTAGATTAAAACTATGTA+TGG | 0.425819 | tig0021384:+50167 | Msa1390730:three_prime_UTR |
| TTGAAAGTGCTCTTAAATAT+CGG | 0.431487 | tig0021384:+48920 | Msa1390730:CDS |
| GCACTGGCATGGTAGAAGAT+TGG | 0.432488 | tig0021384:-49413 | None:intergenic |
| TGAAAGTCTTCACTTGTATG+AGG | 0.439474 | tig0021384:+48951 | Msa1390730:CDS |
| CAAGCCAAGATTGATAGATC+TGG | 0.449154 | tig0021384:-49717 | None:intergenic |
| ATTTAAGGAATGCATTGAAA+AGG | 0.457935 | tig0021384:+48825 | Msa1390730:CDS |
| GTCACTCATTTGTACATGAA+AGG | 0.459961 | tig0021384:+48331 | Msa1390730:CDS |
| TTAAATTTGATTGTTGAAGA+GGG | 0.460758 | tig0021384:+48721 | Msa1390730:CDS |
| TGTAGTGTTTACCCTGCCAC+TGG | 0.464555 | tig0021384:+48508 | Msa1390730:CDS |
| TCACTCATTTGTACATGAAA+GGG | 0.472542 | tig0021384:+48332 | Msa1390730:CDS |
| TCAAAGCGAATCACGGGTTG+TGG | 0.477617 | tig0021384:+48177 | Msa1390730:CDS |
| TAAAACTATGTATGGCTGCT+TGG | 0.479040 | tig0021384:+50175 | Msa1390730:three_prime_UTR |
| TGTGATGGAGAGTTCTTTCA+CGG | 0.480748 | tig0021384:+48679 | Msa1390730:CDS |
| TAATTATGAGTTATGTCCTT+CGG | 0.481954 | tig0021384:+48975 | Msa1390730:CDS |
| CACATCTCACCACCAGTGGC+AGG | 0.482440 | tig0021384:-48520 | None:intergenic |
| CAAAATGGGTTGTTGTGTGA+TGG | 0.482766 | tig0021384:+48664 | Msa1390730:CDS |
| ATCAGAAGCGACAGTGGCAA+TGG | 0.483070 | tig0021384:-49757 | None:intergenic |
| AAAGGAAGTTGCAACTAGTA+AGG | 0.484075 | tig0021384:+49316 | Msa1390730:CDS |
| GCATGCCAGAAGAAGTACTT+TGG | 0.489819 | tig0021384:-49374 | None:intergenic |
| AAGGAATGCATTGAAAAGGT+TGG | 0.494889 | tig0021384:+48829 | Msa1390730:CDS |
| CCACATTCATAGGCAGCATA+AGG | 0.497176 | tig0021384:-49824 | None:intergenic |
| TAAGCCTCAAGAACATTTGT+AGG | 0.497271 | tig0021384:-48307 | None:intergenic |
| TAGTTGCAACTTCCTTTCAC+AGG | 0.501132 | tig0021384:-49310 | None:intergenic |
| GAAATTATGAATGAAATTGA+CGG | 0.501191 | tig0021384:+50024 | Msa1390730:CDS |
| CTCTCCGATGTCTCATGTAC+AGG | 0.507445 | tig0021384:+47869 | Msa1390730:exon |
| AACTCCAAGTCTTTATCTCA+CGG | 0.512124 | tig0021384:+49441 | Msa1390730:CDS |
| TCAGAAGCGACAGTGGCAAT+GGG | 0.512443 | tig0021384:-49756 | None:intergenic |
| GGCATGCAAAGTACTATTCA+GGG | 0.514294 | tig0021384:+49390 | Msa1390730:CDS |
| TGAGCGGTCAAACAAATGTA+AGG | 0.517830 | tig0021384:-48439 | None:intergenic |
| ACGTGTTCTAGTTGATACTC+TGG | 0.520472 | tig0021384:+49125 | Msa1390730:CDS |
| CTAGAATTTGTACTCGCAGT+TGG | 0.528677 | tig0021384:+49850 | Msa1390730:CDS |
| ACCTCCTACAAATGTTCTTG+AGG | 0.536836 | tig0021384:+48303 | Msa1390730:CDS |
| AGAAGAGAAAGTGAGAAATG+AGG | 0.540268 | tig0021384:-47809 | None:intergenic |
| ATGGTTTATGCACTTACTGG+TGG | 0.549227 | tig0021384:+50200 | Msa1390730:three_prime_UTR |
| TAAATTTGATTGTTGAAGAG+GGG | 0.554988 | tig0021384:+48722 | Msa1390730:CDS |
| TAAAGATATCCTATTAGGAA+TGG | 0.555256 | tig0021384:-48383 | None:intergenic |
| GGTAGATCAAAGCGAATCAC+GGG | 0.561365 | tig0021384:+48171 | Msa1390730:CDS |
| AGGTAGATCAAAGCGAATCA+CGG | 0.562854 | tig0021384:+48170 | Msa1390730:CDS |
| CGTTGTGTCATTAATCATGT+TGG | 0.563914 | tig0021384:-49058 | None:intergenic |
| ATTGAACTGTTGAATGATTG+GGG | 0.569657 | tig0021384:+48553 | Msa1390730:CDS |
| CCTTATGCTGCCTATGAATG+TGG | 0.570956 | tig0021384:+49824 | Msa1390730:CDS |
| TGTTGTTCTTGCATTGGGAG+CGG | 0.571678 | tig0021384:+49224 | Msa1390730:CDS |
| GTACAGTGTTGTTCTTGCAT+TGG | 0.574507 | tig0021384:+49218 | Msa1390730:CDS |
| GAATTGGAAGTTAAACAGTA+AGG | 0.575075 | tig0021384:+48474 | Msa1390730:CDS |
| TATGTCCTTCGGCAGAAGAG+TGG | 0.576340 | tig0021384:+48986 | Msa1390730:CDS |
| ACATGGATGTATTAGAATGG+TGG | 0.578505 | tig0021384:+49673 | Msa1390730:CDS |
| TTGATGCATCAACCTGTGAA+AGG | 0.579104 | tig0021384:+49298 | Msa1390730:CDS |
| TGCTTGCTAATGTTTAATGT+CGG | 0.580071 | tig0021384:+50283 | Msa1390730:three_prime_UTR |
| TTATGAAGAGAATGGCTGAA+AGG | 0.593683 | tig0021384:+49163 | Msa1390730:CDS |
| TTCACACATCTCACCACCAG+TGG | 0.597954 | tig0021384:-48524 | None:intergenic |
| GCCTCAAGAACATTTGTAGG+AGG | 0.599415 | tig0021384:-48304 | None:intergenic |
| CTCGAAATCAGAAGCGACAG+TGG | 0.599746 | tig0021384:-49763 | None:intergenic |
| CGTGTTCTAGTTGATACTCT+GGG | 0.603053 | tig0021384:+49126 | Msa1390730:CDS |
| ATGTTGAAAATTTAATACGT+GGG | 0.609160 | tig0021384:-49254 | None:intergenic |
| TTTGATGATGACTGCGATGG+TGG | 0.609880 | tig0021384:+50084 | Msa1390730:CDS |
| CAAAGGGTAAATCAAGTGCA+AGG | 0.611050 | tig0021384:-48219 | None:intergenic |
| GAGAGAGCATCATGTTTGTG+AGG | 0.611082 | tig0021384:+48779 | Msa1390730:CDS |
| AAGACATGGATGTATTAGAA+TGG | 0.611743 | tig0021384:+49670 | Msa1390730:CDS |
| GGAGAGTCACCGTAAGGAGA+CGG | 0.613693 | tig0021384:-47852 | None:intergenic |
| GTGATGGAGAGTTCTTTCAC+GGG | 0.615672 | tig0021384:+48680 | Msa1390730:CDS |
| AGATGAAGTTATGAAGAGAA+TGG | 0.624092 | tig0021384:+49155 | Msa1390730:CDS |
| GACATCGGAGAGTCACCGTA+AGG | 0.624904 | tig0021384:-47858 | None:intergenic |
| AATGTTGAAAATTTAATACG+TGG | 0.625350 | tig0021384:-49255 | None:intergenic |
| AGTGTTTACCCTGCCACTGG+TGG | 0.629471 | tig0021384:+48511 | Msa1390730:CDS |
| ACATCTCACCACCAGTGGCA+GGG | 0.637351 | tig0021384:-48519 | None:intergenic |
| AAGTGAGAAATGAGGTACGC+GGG | 0.639129 | tig0021384:-47801 | None:intergenic |
| GAGGCATTCAAAGAGTAGAA+GGG | 0.646358 | tig0021384:+48798 | Msa1390730:CDS |
| TAAACCGTGAGATAAAGACT+TGG | 0.651980 | tig0021384:-49445 | None:intergenic |
| AATACCTGTACATGAGACAT+CGG | 0.655981 | tig0021384:-47873 | None:intergenic |
| TGGAGCACGAGGGAATGAGG+AGG | 0.698468 | tig0021384:+48248 | Msa1390730:CDS |
| ATTCGCGTCAACAAAATGAG+CGG | 0.717347 | tig0021384:-48455 | None:intergenic |
| GAGTCACCGTAAGGAGACGG+CGG | 0.730294 | tig0021384:-47849 | None:intergenic |
| AAAGTGAGAAATGAGGTACG+CGG | 0.757437 | tig0021384:-47802 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATACCTATATAATTT+AGG | + | tig0021384:47996-48015 | Msa1390730:intron | 10.0% |
| !! | TATTATACCTATATAATTTA+GGG | + | tig0021384:47997-48016 | Msa1390730:intron | 10.0% |
| !!! | TGTAAGTTTATATATATTTT+TGG | + | tig0021384:49473-49492 | Msa1390730:intron | 10.0% |
| !! | ATTATACCTATATAATTTAG+GGG | + | tig0021384:47998-48017 | Msa1390730:intron | 15.0% |
| !!! | TATCTTTAACTTTTGATTTA+TGG | + | tig0021384:48398-48417 | Msa1390730:CDS | 15.0% |
| !!! | ATCTTTAACTTTTGATTTAT+GGG | + | tig0021384:48399-48418 | Msa1390730:CDS | 15.0% |
| !!! | TTTAGTTTATGATGATTTTT+TGG | + | tig0021384:50137-50156 | Msa1390730:three_prime_UTR | 15.0% |
| !!! | TGTTTTTAATTTTTATTGTG+TGG | + | tig0021384:50253-50272 | Msa1390730:three_prime_UTR | 15.0% |
| !! | GATAAGAACCTTATAAAAAA+AGG | - | tig0021384:47911-47930 | None:intergenic | 20.0% |
| !! | AAAGTTAAAGATATCCTATT+AGG | - | tig0021384:48391-48410 | None:intergenic | 20.0% |
| !! | TTTAAATTTGATTGTTGAAG+AGG | + | tig0021384:48720-48739 | Msa1390730:CDS | 20.0% |
| !! | TTAAATTTGATTGTTGAAGA+GGG | + | tig0021384:48721-48740 | Msa1390730:CDS | 20.0% |
| !! | AAAAAATACAAATTGGAAGT+AGG | - | tig0021384:49087-49106 | None:intergenic | 20.0% |
| !! | AACTTGCAAAAAATACAAAT+TGG | - | tig0021384:49094-49113 | None:intergenic | 20.0% |
| !!! | ATTTGTATTTTTTGCAAGTT+TGG | + | tig0021384:49094-49113 | Msa1390730:CDS | 20.0% |
| !! | ATGTTGAAAATTTAATACGT+GGG | - | tig0021384:49257-49276 | None:intergenic | 20.0% |
| !! | AATGTTGAAAATTTAATACG+TGG | - | tig0021384:49258-49277 | None:intergenic | 20.0% |
| !!! | ACGTATTAAATTTTCAACAT+TGG | + | tig0021384:49257-49276 | Msa1390730:CDS | 20.0% |
| !! | TTAAACAAATTCAAGATAGA+AGG | - | tig0021384:49516-49535 | None:intergenic | 20.0% |
| !! | GAAATTATGAATGAAATTGA+CGG | + | tig0021384:50024-50043 | Msa1390730:CDS | 20.0% |
| !! | GTTTAGATTAAAACTATGTA+TGG | + | tig0021384:50167-50186 | Msa1390730:three_prime_UTR | 20.0% |
| !!! | TCAAACTGCCTTTTTTTATA+AGG | + | tig0021384:47900-47919 | Msa1390730:intron | 25.0% |
| ! | ATAAAATCCGTCAAAATTGA+CGG | - | tig0021384:47960-47979 | None:intergenic | 25.0% |
| !!! | TGACGGATTTTATATACTTT+AGG | + | tig0021384:47967-47986 | Msa1390730:intron | 25.0% |
| !!! | GACGGATTTTATATACTTTA+GGG | + | tig0021384:47968-47987 | Msa1390730:intron | 25.0% |
| ! | TTTAGTCCCCTAAATTATAT+AGG | - | tig0021384:48007-48026 | None:intergenic | 25.0% |
| ! | ATAATGCTGAAATGTAATCT+AGG | + | tig0021384:48105-48124 | Msa1390730:intron | 25.0% |
| !!! | TGATTTACCCTTTGATTTTT+TGG | + | tig0021384:48228-48247 | Msa1390730:CDS | 25.0% |
| ! | TAAAGATATCCTATTAGGAA+TGG | - | tig0021384:48386-48405 | None:intergenic | 25.0% |
| ! | TAAATTTGATTGTTGAAGAG+GGG | + | tig0021384:48722-48741 | Msa1390730:CDS | 25.0% |
| ! | ATTTAAGGAATGCATTGAAA+AGG | + | tig0021384:48825-48844 | Msa1390730:CDS | 25.0% |
| !!! | TTGAAAGTGCTCTTAAATAT+CGG | + | tig0021384:48920-48939 | Msa1390730:CDS | 25.0% |
| ! | TAATTATGAGTTATGTCCTT+CGG | + | tig0021384:48975-48994 | Msa1390730:CDS | 25.0% |
| ! | ATTACATTTCACAAGTGAAA+AGG | - | tig0021384:49551-49570 | None:intergenic | 25.0% |
| ! | TTTCACTTGTGAAATGTAAT+AGG | + | tig0021384:49551-49570 | Msa1390730:intron | 25.0% |
| ! | TTACTTAGATGAATCAAGTT+TGG | + | tig0021384:49632-49651 | Msa1390730:CDS | 25.0% |
| ! | TCTACATATCAAAATTGAAG+AGG | - | tig0021384:49976-49995 | None:intergenic | 25.0% |
| !!! | ATTTTGATATGTAGATGAAG+AGG | + | tig0021384:49981-50000 | Msa1390730:intron | 25.0% |
| !!! | ATGATGATTTTTTGGCTTTA+TGG | + | tig0021384:50145-50164 | Msa1390730:three_prime_UTR | 25.0% |
| ! | TGAAAATCCGTCAATTTTGA+CGG | + | tig0021384:47950-47969 | Msa1390730:intron | 30.0% |
| TGATAGTTTAGAGACTATTC+TGG | + | tig0021384:48039-48058 | Msa1390730:intron | 30.0% | |
| AGTCATGTCACAAGAAAAAA+TGG | + | tig0021384:48135-48154 | Msa1390730:CDS | 30.0% | |
| AAAAATGGAATTTGACGATG+AGG | + | tig0021384:48150-48169 | Msa1390730:CDS | 30.0% | |
| TCACTCATTTGTACATGAAA+GGG | + | tig0021384:48332-48351 | Msa1390730:CDS | 30.0% | |
| ATCTAAGCTTCAACAAGAAT+TGG | + | tig0021384:48357-48376 | Msa1390730:CDS | 30.0% | |
| GAATTGGAAGTTAAACAGTA+AGG | + | tig0021384:48474-48493 | Msa1390730:CDS | 30.0% | |
| TGATTGAACTGTTGAATGAT+TGG | + | tig0021384:48551-48570 | Msa1390730:CDS | 30.0% | |
| GATTGAACTGTTGAATGATT+GGG | + | tig0021384:48552-48571 | Msa1390730:CDS | 30.0% | |
| ATTGAACTGTTGAATGATTG+GGG | + | tig0021384:48553-48572 | Msa1390730:CDS | 30.0% | |
| CAACAATTGAAATCTCATCT+TGG | + | tig0021384:48637-48656 | Msa1390730:CDS | 30.0% | |
| AGATGAAGTTATGAAGAGAA+TGG | + | tig0021384:49155-49174 | Msa1390730:CDS | 30.0% | |
| ! | TGAGCAAGTTTGACAAATTT+TGG | + | tig0021384:49190-49209 | Msa1390730:CDS | 30.0% |
| CTTCAATAACAAGTTGTTGA+TGG | - | tig0021384:49590-49609 | None:intergenic | 30.0% | |
| ! | TTTTCGTTGTTATGAAGACA+TGG | + | tig0021384:49656-49675 | Msa1390730:CDS | 30.0% |
| AAGACATGGATGTATTAGAA+TGG | + | tig0021384:49670-49689 | Msa1390730:CDS | 30.0% | |
| ATTTCCAGATCTATCAATCT+TGG | + | tig0021384:49713-49732 | Msa1390730:CDS | 30.0% | |
| ! | TTGTACAATTTTGTCAGCAA+TGG | + | tig0021384:49873-49892 | Msa1390730:CDS | 30.0% |
| TTAATAATTGAATAGACCCG+TGG | - | tig0021384:49953-49972 | None:intergenic | 30.0% | |
| AGAAGAGAAAGTGAGAAATG+AGG | - | tig0021384:47812-47831 | None:intergenic | 35.0% | |
| AATACCTGTACATGAGACAT+CGG | - | tig0021384:47876-47895 | None:intergenic | 35.0% | |
| CTGAAATGTAATCTAGGTTG+TGG | + | tig0021384:48111-48130 | Msa1390730:intron | 35.0% | |
| TCGTGCTCCAAAAAATCAAA+GGG | - | tig0021384:48238-48257 | None:intergenic | 35.0% | |
| !!! | TTTGATTTTTTGGAGCACGA+GGG | + | tig0021384:48238-48257 | Msa1390730:CDS | 35.0% |
| TAAGCCTCAAGAACATTTGT+AGG | - | tig0021384:48310-48329 | None:intergenic | 35.0% | |
| GTCACTCATTTGTACATGAA+AGG | + | tig0021384:48331-48350 | Msa1390730:CDS | 35.0% | |
| AATTGGCTACCATTCCTAAT+AGG | + | tig0021384:48374-48393 | Msa1390730:CDS | 35.0% | |
| !! | TCTCATCTTGGTTTGCAAAA+TGG | + | tig0021384:48649-48668 | Msa1390730:CDS | 35.0% |
| !! | CTCATCTTGGTTTGCAAAAT+GGG | + | tig0021384:48650-48669 | Msa1390730:CDS | 35.0% |
| ! | GCTCTCTCTAATTTTAGACA+CGG | - | tig0021384:48767-48786 | None:intergenic | 35.0% |
| GAGTAGAAGGGAGAAATTTA+AGG | + | tig0021384:48810-48829 | Msa1390730:CDS | 35.0% | |
| AAGGAATGCATTGAAAAGGT+TGG | + | tig0021384:48829-48848 | Msa1390730:CDS | 35.0% | |
| TGAAAGTCTTCACTTGTATG+AGG | + | tig0021384:48951-48970 | Msa1390730:CDS | 35.0% | |
| ATGTTGGCAGTTTCACAAAA+AGG | - | tig0021384:49045-49064 | None:intergenic | 35.0% | |
| ! | CGTTGTGTCATTAATCATGT+TGG | - | tig0021384:49061-49080 | None:intergenic | 35.0% |
| TTATGAAGAGAATGGCTGAA+AGG | + | tig0021384:49163-49182 | Msa1390730:CDS | 35.0% | |
| ! | TACAGTGTTGTTCTTGCATT+GGG | + | tig0021384:49219-49238 | Msa1390730:CDS | 35.0% |
| AAAGGAAGTTGCAACTAGTA+AGG | + | tig0021384:49316-49335 | Msa1390730:CDS | 35.0% | |
| ACGAAGTTGTACATGCTATT+TGG | + | tig0021384:49339-49358 | Msa1390730:CDS | 35.0% | |
| AACTCCAAGTCTTTATCTCA+CGG | + | tig0021384:49441-49460 | Msa1390730:CDS | 35.0% | |
| TAAACCGTGAGATAAAGACT+TGG | - | tig0021384:49448-49467 | None:intergenic | 35.0% | |
| AAGTGAAAAGGAAAGCAATG+AGG | - | tig0021384:49539-49558 | None:intergenic | 35.0% | |
| !! | CAACAACTTGTTATTGAAGC+TGG | + | tig0021384:49591-49610 | Msa1390730:CDS | 35.0% |
| ACATGGATGTATTAGAATGG+TGG | + | tig0021384:49673-49692 | Msa1390730:CDS | 35.0% | |
| !!! | TTCTGATTTCGAGTTTTGCA+TGG | + | tig0021384:49773-49792 | Msa1390730:CDS | 35.0% |
| !!! | TCTGATTTCGAGTTTTGCAT+GGG | + | tig0021384:49774-49793 | Msa1390730:CDS | 35.0% |
| !! | ATTCTAGCTTCCACATTCAT+AGG | - | tig0021384:49837-49856 | None:intergenic | 35.0% |
| CAAAACAACACGATTAGACA+TGG | - | tig0021384:49926-49945 | None:intergenic | 35.0% | |
| !!! | TCGTGTTGTTTTGATAACCA+CGG | + | tig0021384:49933-49952 | Msa1390730:intron | 35.0% |
| AATTGACGGCGATGAAAAAA+TGG | + | tig0021384:50038-50057 | Msa1390730:CDS | 35.0% | |
| TAAAACTATGTATGGCTGCT+TGG | + | tig0021384:50175-50194 | Msa1390730:three_prime_UTR | 35.0% | |
| GATATGGTTTATGCACTTAC+TGG | + | tig0021384:50197-50216 | Msa1390730:three_prime_UTR | 35.0% | |
| AAAGTGAGAAATGAGGTACG+CGG | - | tig0021384:47805-47824 | None:intergenic | 40.0% | |
| TTTAGGGGACTAAAATGACG+AGG | + | tig0021384:48013-48032 | Msa1390730:intron | 40.0% | |
| AGGTAGATCAAAGCGAATCA+CGG | + | tig0021384:48170-48189 | Msa1390730:CDS | 40.0% | |
| CAAAGGGTAAATCAAGTGCA+AGG | - | tig0021384:48222-48241 | None:intergenic | 40.0% | |
| CTCGTGCTCCAAAAAATCAA+AGG | - | tig0021384:48239-48258 | None:intergenic | 40.0% | |
| !!! | CTTTGATTTTTTGGAGCACG+AGG | + | tig0021384:48237-48256 | Msa1390730:CDS | 40.0% |
| ! | GTAGGAGGTATAACAGCATT+TGG | - | tig0021384:48292-48311 | None:intergenic | 40.0% |
| ACCTCCTACAAATGTTCTTG+AGG | + | tig0021384:48303-48322 | Msa1390730:CDS | 40.0% | |
| TGAGCGGTCAAACAAATGTA+AGG | - | tig0021384:48442-48461 | None:intergenic | 40.0% | |
| ATTCGCGTCAACAAAATGAG+CGG | - | tig0021384:48458-48477 | None:intergenic | 40.0% | |
| ! | CTCATTTTGTTGACGCGAAT+TGG | + | tig0021384:48458-48477 | Msa1390730:CDS | 40.0% |
| !! | CAAAATGGGTTGTTGTGTGA+TGG | + | tig0021384:48664-48683 | Msa1390730:CDS | 40.0% |
| ! | TGTGATGGAGAGTTCTTTCA+CGG | + | tig0021384:48679-48698 | Msa1390730:CDS | 40.0% |
| ! | TGAGGCATTCAAAGAGTAGA+AGG | + | tig0021384:48797-48816 | Msa1390730:CDS | 40.0% |
| ! | GAGGCATTCAAAGAGTAGAA+GGG | + | tig0021384:48798-48817 | Msa1390730:CDS | 40.0% |
| ! | ACGTGTTCTAGTTGATACTC+TGG | + | tig0021384:49125-49144 | Msa1390730:CDS | 40.0% |
| ! | CGTGTTCTAGTTGATACTCT+GGG | + | tig0021384:49126-49145 | Msa1390730:CDS | 40.0% |
| ! | GTACAGTGTTGTTCTTGCAT+TGG | + | tig0021384:49218-49237 | Msa1390730:CDS | 40.0% |
| TTGATGCATCAACCTGTGAA+AGG | + | tig0021384:49298-49317 | Msa1390730:CDS | 40.0% | |
| TAGTTGCAACTTCCTTTCAC+AGG | - | tig0021384:49313-49332 | None:intergenic | 40.0% | |
| ! | TCTAGCCAAAGTACTTCTTC+TGG | + | tig0021384:49369-49388 | Msa1390730:CDS | 40.0% |
| ! | TGGCATGCAAAGTACTATTC+AGG | + | tig0021384:49389-49408 | Msa1390730:CDS | 40.0% |
| ! | GGCATGCAAAGTACTATTCA+GGG | + | tig0021384:49390-49409 | Msa1390730:CDS | 40.0% |
| CAAGCCAAGATTGATAGATC+TGG | - | tig0021384:49720-49739 | None:intergenic | 40.0% | |
| CTAGAATTTGTACTCGCAGT+TGG | + | tig0021384:49850-49869 | Msa1390730:CDS | 40.0% | |
| !!! | CGTGTTGTTTTGATAACCAC+GGG | + | tig0021384:49934-49953 | Msa1390730:intron | 40.0% |
| !!! | GATTTTGATGATGACTGCGA+TGG | + | tig0021384:50081-50100 | Msa1390730:CDS | 40.0% |
| TATGTATGGCTGCTTGGATA+TGG | + | tig0021384:50181-50200 | Msa1390730:three_prime_UTR | 40.0% | |
| ATGGTTTATGCACTTACTGG+TGG | + | tig0021384:50200-50219 | Msa1390730:three_prime_UTR | 40.0% | |
| AAGTGAGAAATGAGGTACGC+GGG | - | tig0021384:47804-47823 | None:intergenic | 45.0% | |
| GGTAGATCAAAGCGAATCAC+GGG | + | tig0021384:48171-48190 | Msa1390730:CDS | 45.0% | |
| GCCTCAAGAACATTTGTAGG+AGG | - | tig0021384:48307-48326 | None:intergenic | 45.0% | |
| ! | GTGATGGAGAGTTCTTTCAC+GGG | + | tig0021384:48680-48699 | Msa1390730:CDS | 45.0% |
| !! | GAGAGAGCATCATGTTTGTG+AGG | + | tig0021384:48779-48798 | Msa1390730:CDS | 45.0% |
| ! | TAGTTCTGTTCGCTTGCATC+AGG | + | tig0021384:48861-48880 | Msa1390730:CDS | 45.0% |
| TGTTGTTCTTGCATTGGGAG+CGG | + | tig0021384:49224-49243 | Msa1390730:CDS | 45.0% | |
| !! | GCATGCCAGAAGAAGTACTT+TGG | - | tig0021384:49377-49396 | None:intergenic | 45.0% |
| ! | GACTTGGAGTTCTTTTGCAC+TGG | - | tig0021384:49432-49451 | None:intergenic | 45.0% |
| CCACATTCATAGGCAGCATA+AGG | - | tig0021384:49827-49846 | None:intergenic | 45.0% | |
| CCTTATGCTGCCTATGAATG+TGG | + | tig0021384:49824-49843 | Msa1390730:CDS | 45.0% | |
| !! | TTTGATGATGACTGCGATGG+TGG | + | tig0021384:50084-50103 | Msa1390730:CDS | 45.0% |
| CTCTCCGATGTCTCATGTAC+AGG | + | tig0021384:47869-47888 | Msa1390730:exon | 50.0% | |
| ! | TCAAAGCGAATCACGGGTTG+TGG | + | tig0021384:48177-48196 | Msa1390730:CDS | 50.0% |
| !!! | TTTTGGAGCACGAGGGAATG+AGG | + | tig0021384:48245-48264 | Msa1390730:CDS | 50.0% |
| TGTAGTGTTTACCCTGCCAC+TGG | + | tig0021384:48508-48527 | Msa1390730:CDS | 50.0% | |
| TTCACACATCTCACCACCAG+TGG | - | tig0021384:48527-48546 | None:intergenic | 50.0% | |
| TATGTCCTTCGGCAGAAGAG+TGG | + | tig0021384:48986-49005 | Msa1390730:CDS | 50.0% | |
| ! | CTTTTCCACTCTTCTGCCGA+AGG | - | tig0021384:48994-49013 | None:intergenic | 50.0% |
| ! | GCACTGGCATGGTAGAAGAT+TGG | - | tig0021384:49416-49435 | None:intergenic | 50.0% |
| !! | GGAGTTCTTTTGCACTGGCA+TGG | - | tig0021384:49427-49446 | None:intergenic | 50.0% |
| TCAGAAGCGACAGTGGCAAT+GGG | - | tig0021384:49759-49778 | None:intergenic | 50.0% | |
| ATCAGAAGCGACAGTGGCAA+TGG | - | tig0021384:49760-49779 | None:intergenic | 50.0% | |
| CTCGAAATCAGAAGCGACAG+TGG | - | tig0021384:49766-49785 | None:intergenic | 50.0% | |
| GGAGAGTCACCGTAAGGAGA+CGG | - | tig0021384:47855-47874 | None:intergenic | 55.0% | |
| GACATCGGAGAGTCACCGTA+AGG | - | tig0021384:47861-47880 | None:intergenic | 55.0% | |
| AGTGTTTACCCTGCCACTGG+TGG | + | tig0021384:48511-48530 | Msa1390730:CDS | 55.0% | |
| ACATCTCACCACCAGTGGCA+GGG | - | tig0021384:48522-48541 | None:intergenic | 55.0% | |
| GAGTCACCGTAAGGAGACGG+CGG | - | tig0021384:47852-47871 | None:intergenic | 60.0% | |
| TGGAGCACGAGGGAATGAGG+AGG | + | tig0021384:48248-48267 | Msa1390730:CDS | 60.0% | |
| CACATCTCACCACCAGTGGC+AGG | - | tig0021384:48523-48542 | None:intergenic | 60.0% | |
| CTCTCGCCGCCGTCTCCTTA+CGG | + | tig0021384:47843-47862 | Msa1390730:five_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021384 | gene | 47783 | 50305 | 47783 | ID=Msa1390730;Name=Msa1390730 |
| tig0021384 | mRNA | 47783 | 50305 | 47783 | ID=Msa1390730-mRNA-1;Parent=Msa1390730;Name=Msa1390730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=93|1|1|1|0.66|0.5|4|189|601 |
| tig0021384 | exon | 47783 | 47890 | 47783 | ID=Msa1390730-mRNA-1:exon:12369;Parent=Msa1390730-mRNA-1 |
| tig0021384 | exon | 48127 | 49473 | 48127 | ID=Msa1390730-mRNA-1:exon:12370;Parent=Msa1390730-mRNA-1 |
| tig0021384 | exon | 49573 | 49894 | 49573 | ID=Msa1390730-mRNA-1:exon:12371;Parent=Msa1390730-mRNA-1 |
| tig0021384 | exon | 49995 | 50305 | 49995 | ID=Msa1390730-mRNA-1:exon:12372;Parent=Msa1390730-mRNA-1 |
| tig0021384 | five_prime_UTR | 47783 | 47875 | 47783 | ID=Msa1390730-mRNA-1:five_prime_utr;Parent=Msa1390730-mRNA-1 |
| tig0021384 | CDS | 47876 | 47890 | 47876 | ID=Msa1390730-mRNA-1:cds;Parent=Msa1390730-mRNA-1 |
| tig0021384 | CDS | 48127 | 49473 | 48127 | ID=Msa1390730-mRNA-1:cds;Parent=Msa1390730-mRNA-1 |
| tig0021384 | CDS | 49573 | 49894 | 49573 | ID=Msa1390730-mRNA-1:cds;Parent=Msa1390730-mRNA-1 |
| tig0021384 | CDS | 49995 | 50116 | 49995 | ID=Msa1390730-mRNA-1:cds;Parent=Msa1390730-mRNA-1 |
| tig0021384 | three_prime_UTR | 50117 | 50305 | 50117 | ID=Msa1390730-mRNA-1:three_prime_utr;Parent=Msa1390730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
