Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704890 | XP_024627967.2 | 79.352 | 586 | 121 | 0 | 1 | 586 | 1 | 586 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704890 | sp|Q6AVI0|RSLE2_ORYSJ | 32.545 | 550 | 356 | 9 | 25 | 563 | 165 | 710 | 5.89e-100 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704890 | A0A396IDQ4 | 79.027 | 596 | 122 | 1 | 1 | 593 | 1 | 596 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0704890 | 0.813071 | 3.081664e-51 | -8.615850e-47 |
| Msa0033880 | Msa0704890 | 0.802946 | 4.407858e-49 | -8.615850e-47 |
| Msa0035120 | Msa0704890 | 0.804806 | 1.809751e-49 | -8.615850e-47 |
| Msa0035130 | Msa0704890 | 0.828838 | 7.194161e-55 | -8.615850e-47 |
| Msa0106620 | Msa0704890 | 0.808113 | 3.632828e-50 | -8.615850e-47 |
| Msa0615580 | Msa0704890 | 0.806310 | 8.751063e-50 | -8.615850e-47 |
| Msa0618950 | Msa0704890 | 0.812629 | 3.850647e-51 | -8.615850e-47 |
| Msa0619200 | Msa0704890 | 0.916153 | 2.508466e-85 | -8.615850e-47 |
| Msa0619420 | Msa0704890 | 0.805062 | 1.600016e-49 | -8.615850e-47 |
| Msa0628420 | Msa0704890 | 0.830154 | 3.445535e-55 | -8.615850e-47 |
| Msa0658590 | Msa0704890 | 0.841563 | 4.406059e-58 | -8.615850e-47 |
| Msa0666230 | Msa0704890 | 0.802185 | 6.326319e-49 | -8.615850e-47 |
| Msa0672550 | Msa0704890 | 0.803348 | 3.639112e-49 | -8.615850e-47 |
| Msa0703550 | Msa0704890 | 0.812878 | 3.397392e-51 | -8.615850e-47 |
| Msa0704890 | Msa0705390 | 0.813465 | 2.525265e-51 | -8.615850e-47 |
| Msa0704890 | Msa0785130 | 0.801633 | 8.211310e-49 | -8.615850e-47 |
| Msa0704890 | Msa0804250 | 0.817347 | 3.456135e-52 | -8.615850e-47 |
| Msa0704890 | Msa0809980 | 0.808717 | 2.700432e-50 | -8.615850e-47 |
| Msa0704890 | Msa0934140 | 0.803252 | 3.809545e-49 | -8.615850e-47 |
| Msa0704890 | Msa0944660 | 0.803806 | 2.924355e-49 | -8.615850e-47 |
| Msa0704890 | Msa0945240 | 0.800458 | 1.428057e-48 | -8.615850e-47 |
| Msa0704890 | Msa1029070 | 0.811839 | 5.727251e-51 | -8.615850e-47 |
| Msa0704890 | Msa1072710 | 0.824580 | 7.474019e-54 | -8.615850e-47 |
| Msa0704890 | Msa1089450 | 0.819676 | 1.024917e-52 | -8.615850e-47 |
| Msa0704890 | Msa1123350 | 0.820316 | 7.314206e-53 | -8.615850e-47 |
| Msa0704890 | Msa1127540 | 0.817667 | 2.928423e-52 | -8.615850e-47 |
| Msa0704890 | Msa1127590 | 0.847240 | 1.310179e-59 | -8.615850e-47 |
| Msa0704890 | Msa1132480 | 0.828809 | 7.311558e-55 | -8.615850e-47 |
| Msa0704890 | Msa1135890 | 0.802624 | 5.135666e-49 | -8.615850e-47 |
| Msa0704890 | Msa1145240 | 0.800485 | 1.409727e-48 | -8.615850e-47 |
| Msa0704890 | Msa1156160 | 0.803623 | 3.190915e-49 | -8.615850e-47 |
| Msa0704890 | Msa1158230 | 0.804993 | 1.654253e-49 | -8.615850e-47 |
| Msa0704890 | Msa1165780 | 0.805433 | 1.337939e-49 | -8.615850e-47 |
| Msa0704890 | Msa1201640 | 0.812529 | 4.049060e-51 | -8.615850e-47 |
| Msa0704890 | Msa1218450 | 0.819419 | 1.172784e-52 | -8.615850e-47 |
| Msa0704890 | Msa1219000 | 0.802144 | 6.448669e-49 | -8.615850e-47 |
| Msa0704890 | Msa1226470 | 0.837166 | 6.102845e-57 | -8.615850e-47 |
| Msa0704890 | Msa1262890 | 0.809919 | 1.491703e-50 | -8.615850e-47 |
| Msa0704890 | Msa1265590 | 0.834767 | 2.476940e-56 | -8.615850e-47 |
| Msa0704890 | Msa1332760 | 0.803059 | 4.176927e-49 | -8.615850e-47 |
| Msa0704890 | Msa1351540 | 0.806123 | 9.586128e-50 | -8.615850e-47 |
| Msa0704890 | Msa1373100 | 0.825378 | 4.844144e-54 | -8.615850e-47 |
| Msa0704890 | Msa1374060 | 0.808193 | 3.493340e-50 | -8.615850e-47 |
| Msa0704890 | Msa1381350 | 0.800880 | 1.170807e-48 | -8.615850e-47 |
| Msa0704890 | Msa1390730 | 0.940198 | 3.512366e-100 | -8.615850e-47 |
| Msa0704890 | Msa1411500 | 0.814610 | 1.411613e-51 | -8.615850e-47 |
| Msa0704890 | Msa1411950 | 0.828661 | 7.941499e-55 | -8.615850e-47 |
| Msa0704890 | Msa1422950 | 0.825291 | 5.078815e-54 | -8.615850e-47 |
| Msa0704890 | Msa1440310 | 0.815739 | 7.922952e-52 | -8.615850e-47 |
| Msa0704890 | Msa1440880 | 0.808494 | 3.012870e-50 | -8.615850e-47 |
| Msa0704890 | Msa1447180 | 0.829056 | 6.373343e-55 | -8.615850e-47 |
| Msa0704890 | Msa1450720 | 0.803200 | 3.904747e-49 | -8.615850e-47 |
| Msa0704890 | Msa1461540 | 0.805153 | 1.531516e-49 | -8.615850e-47 |
| Msa0124450 | Msa0704890 | 0.826756 | 2.278544e-54 | -8.615850e-47 |
| Msa0127100 | Msa0704890 | 0.815141 | 1.076343e-51 | -8.615850e-47 |
| Msa0127850 | Msa0704890 | 0.800439 | 1.440549e-48 | -8.615850e-47 |
| Msa0146280 | Msa0704890 | 0.803110 | 4.076661e-49 | -8.615850e-47 |
| Msa0174000 | Msa0704890 | 0.800673 | 1.290521e-48 | -8.615850e-47 |
| Msa0188350 | Msa0704890 | 0.838008 | 3.710751e-57 | -8.615850e-47 |
| Msa0192480 | Msa0704890 | 0.800896 | 1.162146e-48 | -8.615850e-47 |
| Msa0202410 | Msa0704890 | 0.805007 | 1.643223e-49 | -8.615850e-47 |
| Msa0223230 | Msa0704890 | 0.802661 | 5.045566e-49 | -8.615850e-47 |
| Msa0231100 | Msa0704890 | 0.800497 | 1.401812e-48 | -8.615850e-47 |
| Msa0233370 | Msa0704890 | 0.805639 | 1.211658e-49 | -8.615850e-47 |
| Msa0378970 | Msa0704890 | 0.816479 | 5.414228e-52 | -8.615850e-47 |
| Msa0450400 | Msa0704890 | -0.825127 | 5.553176e-54 | -8.615850e-47 |
| Msa0474940 | Msa0704890 | 0.805970 | 1.032094e-49 | -8.615850e-47 |
| Msa0481970 | Msa0704890 | 0.808930 | 2.431663e-50 | -8.615850e-47 |
| Msa0241830 | Msa0704890 | 0.832105 | 1.142545e-55 | -8.615850e-47 |
| Msa0245430 | Msa0704890 | 0.811691 | 6.167450e-51 | -8.615850e-47 |
| Msa0249580 | Msa0704890 | 0.809632 | 1.718780e-50 | -8.615850e-47 |
| Msa0261170 | Msa0704890 | 0.806490 | 8.018874e-50 | -8.615850e-47 |
| Msa0262480 | Msa0704890 | 0.824121 | 9.580004e-54 | -8.615850e-47 |
| Msa0279850 | Msa0704890 | 0.821438 | 4.037635e-53 | -8.615850e-47 |
| Msa0281530 | Msa0704890 | 0.804404 | 2.195207e-49 | -8.615850e-47 |
| Msa0296250 | Msa0704890 | 0.807856 | 4.120418e-50 | -8.615850e-47 |
| Msa0307850 | Msa0704890 | 0.805164 | 1.523334e-49 | -8.615850e-47 |
| Msa0317970 | Msa0704890 | 0.825798 | 3.850925e-54 | -8.615850e-47 |
| Msa0320590 | Msa0704890 | 0.811227 | 7.779200e-51 | -8.615850e-47 |
| Msa0322240 | Msa0704890 | 0.808929 | 2.432567e-50 | -8.615850e-47 |
| Msa0322900 | Msa0704890 | 0.835055 | 2.096699e-56 | -8.615850e-47 |
| Msa0339490 | Msa0704890 | 0.801686 | 8.010499e-49 | -8.615850e-47 |
| Msa0341690 | Msa0704890 | 0.816913 | 4.327769e-52 | -8.615850e-47 |
| Msa0518030 | Msa0704890 | 0.805558 | 1.259538e-49 | -8.615850e-47 |
| Msa0531250 | Msa0704890 | 0.831725 | 1.418243e-55 | -8.615850e-47 |
| Msa0531650 | Msa0704890 | 0.819132 | 1.363921e-52 | -8.615850e-47 |
| Msa0554290 | Msa0704890 | 0.804807 | 1.809003e-49 | -8.615850e-47 |
| Msa0560500 | Msa0704890 | 0.824616 | 7.329534e-54 | -8.615850e-47 |
| Msa0568340 | Msa0704890 | 0.846128 | 2.638472e-59 | -8.615850e-47 |
| Msa0588090 | Msa0704890 | 0.824749 | 6.820647e-54 | -8.615850e-47 |
| Msa0588360 | Msa0704890 | 0.805925 | 1.055069e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704890 | MtrunA17_Chr4g0052681 | 79.027 | 596 | 122 | 1 | 1 | 593 | 1 | 596 | 0.0 | 947 |
| Msa0704890 | MtrunA17_Chr8g0383081 | 75.215 | 581 | 138 | 4 | 1 | 581 | 1 | 575 | 0.0 | 899 |
| Msa0704890 | MtrunA17_Chr8g0383041 | 70.627 | 606 | 160 | 4 | 10 | 601 | 1 | 602 | 0.0 | 844 |
| Msa0704890 | MtrunA17_Chr8g0383071 | 75.945 | 291 | 70 | 0 | 79 | 369 | 20 | 310 | 1.99e-161 | 463 |
| Msa0704890 | MtrunA17_Chr8g0383051 | 71.246 | 313 | 87 | 3 | 1 | 311 | 14 | 325 | 1.20e-157 | 454 |
| Msa0704890 | MtrunA17_Chr8g0383061 | 80.088 | 226 | 41 | 1 | 355 | 580 | 1 | 222 | 1.37e-119 | 353 |
| Msa0704890 | MtrunA17_Chr8g0383211 | 34.828 | 580 | 352 | 10 | 3 | 566 | 77 | 646 | 2.43e-100 | 319 |
| Msa0704890 | MtrunA17_Chr8g0383091 | 91.781 | 146 | 10 | 1 | 355 | 500 | 1 | 144 | 1.67e-90 | 275 |
| Msa0704890 | MtrunA17_Chr2g0308821 | 29.725 | 545 | 373 | 5 | 22 | 561 | 125 | 664 | 3.30e-84 | 276 |
| Msa0704890 | MtrunA17_Chr7g0263231 | 30.171 | 527 | 360 | 5 | 33 | 555 | 546 | 1068 | 2.80e-83 | 282 |
| Msa0704890 | MtrunA17_Chr8g0359341 | 30.991 | 555 | 361 | 7 | 8 | 557 | 171 | 708 | 2.61e-80 | 268 |
| Msa0704890 | MtrunA17_Chr8g0354631 | 29.982 | 547 | 351 | 13 | 33 | 555 | 164 | 702 | 4.31e-79 | 265 |
| Msa0704890 | MtrunA17_Chr7g0263261 | 29.870 | 539 | 368 | 6 | 21 | 555 | 477 | 1009 | 2.30e-78 | 268 |
| Msa0704890 | MtrunA17_Chr4g0003151 | 27.087 | 539 | 382 | 6 | 25 | 555 | 124 | 659 | 1.05e-76 | 257 |
| Msa0704890 | MtrunA17_Chr2g0333261 | 28.022 | 546 | 378 | 8 | 21 | 556 | 139 | 679 | 3.01e-75 | 253 |
| Msa0704890 | MtrunA17_Chr5g0402891 | 27.322 | 549 | 379 | 9 | 43 | 577 | 59 | 601 | 2.90e-67 | 230 |
| Msa0704890 | MtrunA17_Chr4g0053391 | 41.111 | 270 | 146 | 4 | 305 | 572 | 1 | 259 | 4.06e-62 | 207 |
| Msa0704890 | MtrunA17_Chr4g0052601 | 35.404 | 322 | 196 | 5 | 20 | 334 | 106 | 422 | 2.89e-55 | 193 |
| Msa0704890 | MtrunA17_Chr1g0192041 | 42.857 | 182 | 103 | 1 | 256 | 436 | 60 | 241 | 3.91e-44 | 157 |
| Msa0704890 | MtrunA17_Chr4g0062411 | 24.680 | 547 | 377 | 11 | 35 | 574 | 150 | 668 | 5.07e-37 | 146 |
| Msa0704890 | MtrunA17_Chr5g0408131 | 34.389 | 221 | 136 | 4 | 355 | 573 | 23 | 236 | 1.75e-35 | 134 |
| Msa0704890 | MtrunA17_Chr8g0383181 | 31.140 | 228 | 139 | 7 | 1 | 213 | 66 | 290 | 5.23e-25 | 105 |
| Msa0704890 | MtrunA17_Chr8g0383171 | 30.102 | 196 | 122 | 4 | 377 | 567 | 58 | 243 | 1.06e-21 | 95.5 |
| Msa0704890 | MtrunA17_Chr4g0052611 | 30.455 | 220 | 118 | 7 | 349 | 555 | 6 | 203 | 3.85e-21 | 93.2 |
| Msa0704890 | MtrunA17_Chr3g0108001 | 43.269 | 104 | 48 | 3 | 487 | 588 | 5 | 99 | 1.20e-19 | 84.7 |
| Msa0704890 | MtrunA17_Chr8g0390371 | 41.026 | 78 | 46 | 0 | 487 | 564 | 9 | 86 | 2.63e-16 | 74.3 |
| Msa0704890 | MtrunA17_Chr1g0162951 | 50.980 | 51 | 25 | 0 | 508 | 558 | 1 | 51 | 5.82e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0704890 | AT3G42170.2 | 30.930 | 527 | 338 | 7 | 33 | 555 | 148 | 652 | 4.83e-90 | 292 |
| Msa0704890 | AT3G42170.1 | 30.930 | 527 | 338 | 7 | 33 | 555 | 170 | 674 | 7.64e-90 | 292 |
| Msa0704890 | AT1G18560.1 | 24.269 | 581 | 371 | 18 | 37 | 585 | 145 | 688 | 1.63e-28 | 121 |
Find 100 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCAAGTTTGACAAATTT+TGG | 0.118977 | 4_4:-77402580 | Msa0704890:CDS |
| TCTCATCTTGGTTTGCAAAA+TGG | 0.163789 | 4_4:-77403121 | Msa0704890:CDS |
| CTCATCTTGGTTTGCAAAAT+GGG | 0.245980 | 4_4:-77403120 | Msa0704890:CDS |
| GAGTAGAAGGGAGAAATTTA+AGG | 0.250530 | 4_4:-77402960 | Msa0704890:CDS |
| ACGAAGTTGTACATGCTATT+TGG | 0.252127 | 4_4:-77402431 | Msa0704890:CDS |
| GATATGGTTTATGCACTTAC+TGG | 0.279825 | 4_4:-77401578 | Msa0704890:three_prime_UTR |
| TGGCATGCAAAGTACTATTC+AGG | 0.287867 | 4_4:-77402381 | Msa0704890:CDS |
| TGAGGCATTCAAAGAGTAGA+AGG | 0.319331 | 4_4:-77402973 | Msa0704890:CDS |
| ATGTTGGCAGTTTCACAAAA+AGG | 0.324708 | 4_4:+77402728 | None:intergenic |
| TTACTTAGATGAATCAAGTT+TGG | 0.331942 | 4_4:-77402138 | Msa0704890:CDS |
| AAAGTTAAAGATATCCTATT+AGG | 0.333650 | 4_4:+77403382 | None:intergenic |
| ATTTCCAGATCTATCAATCT+TGG | 0.351942 | 4_4:-77402057 | Msa0704890:CDS |
| ATCTAAGCTTCAACAAGAAT+TGG | 0.358923 | 4_4:-77403413 | Msa0704890:CDS |
| TCTAGCCAAAGTACTTCTTC+TGG | 0.359157 | 4_4:-77402401 | Msa0704890:CDS |
| ATTCTAGCTTCCACATTCAT+AGG | 0.364577 | 4_4:+77401936 | None:intergenic |
| CTTCAATAACAAGTTGTTGA+TGG | 0.370337 | 4_4:+77402183 | None:intergenic |
| TACAGTGTTGTTCTTGCATT+GGG | 0.376545 | 4_4:-77402551 | Msa0704890:CDS |
| TGATTGAACTGTTGAATGAT+TGG | 0.387676 | 4_4:-77403219 | Msa0704890:CDS |
| AATTGGCTACCATTCCTAAT+AGG | 0.389770 | 4_4:-77403396 | Msa0704890:CDS |
| CAACAATTGAAATCTCATCT+TGG | 0.396385 | 4_4:-77403133 | Msa0704890:CDS |
| GTAGGAGGTATAACAGCATT+TGG | 0.404852 | 4_4:+77403481 | None:intergenic |
| TATGTATGGCTGCTTGGATA+TGG | 0.407136 | 4_4:-77401594 | Msa0704890:three_prime_UTR |
| CAACAACTTGTTATTGAAGC+TGG | 0.409267 | 4_4:-77402179 | Msa0704890:CDS |
| TTTAAATTTGATTGTTGAAG+AGG | 0.417116 | 4_4:-77403050 | Msa0704890:CDS |
| GATTGAACTGTTGAATGATT+GGG | 0.421976 | 4_4:-77403218 | Msa0704890:CDS |
| TAGTTCTGTTCGCTTGCATC+AGG | 0.424044 | 4_4:-77402909 | Msa0704890:CDS |
| CTCTCGCCGCCGTCTCCTTA+CGG | 0.425085 | 4_4:-77403927 | Msa0704890:five_prime_UTR |
| GTTTAGATTAAAACTATGTA+TGG | 0.425819 | 4_4:-77401608 | Msa0704890:three_prime_UTR |
| TTGAAAGTGCTCTTAAATAT+CGG | 0.431487 | 4_4:-77402850 | Msa0704890:CDS |
| GCACTGGCATGGTAGAAGAT+TGG | 0.432488 | 4_4:+77402357 | None:intergenic |
| TGAAAGTCTTCACTTGTATG+AGG | 0.439474 | 4_4:-77402819 | Msa0704890:CDS |
| CAAGCCAAGATTGATAGATC+TGG | 0.449154 | 4_4:+77402053 | None:intergenic |
| ATTTAAGGAATGCATTGAAA+AGG | 0.457935 | 4_4:-77402945 | Msa0704890:CDS |
| GTCACTCATTTGTACATGAA+AGG | 0.459961 | 4_4:-77403439 | Msa0704890:CDS |
| TTAAATTTGATTGTTGAAGA+GGG | 0.460758 | 4_4:-77403049 | Msa0704890:CDS |
| TGTAGTGTTTACCCTGCCAC+TGG | 0.464555 | 4_4:-77403262 | Msa0704890:CDS |
| TCACTCATTTGTACATGAAA+GGG | 0.472542 | 4_4:-77403438 | Msa0704890:CDS |
| TCAAAGCGAATCACGGGTTG+TGG | 0.477617 | 4_4:-77403593 | Msa0704890:CDS |
| TAAAACTATGTATGGCTGCT+TGG | 0.479040 | 4_4:-77401600 | Msa0704890:three_prime_UTR |
| TGTGATGGAGAGTTCTTTCA+CGG | 0.480748 | 4_4:-77403091 | Msa0704890:CDS |
| TAATTATGAGTTATGTCCTT+CGG | 0.481954 | 4_4:-77402795 | Msa0704890:CDS |
| CACATCTCACCACCAGTGGC+AGG | 0.482440 | 4_4:+77403250 | None:intergenic |
| CAAAATGGGTTGTTGTGTGA+TGG | 0.482766 | 4_4:-77403106 | Msa0704890:CDS |
| ATCAGAAGCGACAGTGGCAA+TGG | 0.483070 | 4_4:+77402013 | None:intergenic |
| AAAGGAAGTTGCAACTAGTA+AGG | 0.484075 | 4_4:-77402454 | Msa0704890:CDS |
| GCATGCCAGAAGAAGTACTT+TGG | 0.489819 | 4_4:+77402396 | None:intergenic |
| AAGGAATGCATTGAAAAGGT+TGG | 0.494889 | 4_4:-77402941 | Msa0704890:CDS |
| CCACATTCATAGGCAGCATA+AGG | 0.497176 | 4_4:+77401946 | None:intergenic |
| TAAGCCTCAAGAACATTTGT+AGG | 0.497271 | 4_4:+77403463 | None:intergenic |
| TAGTTGCAACTTCCTTTCAC+AGG | 0.501132 | 4_4:+77402460 | None:intergenic |
| GAAATTATGAATGAAATTGA+CGG | 0.501191 | 4_4:-77401751 | Msa0704890:CDS |
| AACTCCAAGTCTTTATCTCA+CGG | 0.501652 | 4_4:-77402329 | Msa0704890:CDS |
| CTCTCCGATGTCTCATGTAC+AGG | 0.507445 | 4_4:-77403901 | Msa0704890:intron |
| TCAGAAGCGACAGTGGCAAT+GGG | 0.512443 | 4_4:+77402014 | None:intergenic |
| GGCATGCAAAGTACTATTCA+GGG | 0.514294 | 4_4:-77402380 | Msa0704890:CDS |
| TGAGCGGTCAAACAAATGTA+AGG | 0.517830 | 4_4:+77403331 | None:intergenic |
| ACGTGTTCTAGTTGATACTC+TGG | 0.523550 | 4_4:-77402645 | Msa0704890:CDS |
| CTAGAATTTGTACTCGCAGT+TGG | 0.528677 | 4_4:-77401920 | Msa0704890:CDS |
| ACCTCCTACAAATGTTCTTG+AGG | 0.536836 | 4_4:-77403467 | Msa0704890:CDS |
| AGAAGAGAAAGTGAGAAATG+AGG | 0.540268 | 4_4:+77403961 | None:intergenic |
| ATGGTTTATGCACTTACTGG+TGG | 0.549227 | 4_4:-77401575 | Msa0704890:three_prime_UTR |
| TAAATTTGATTGTTGAAGAG+GGG | 0.554988 | 4_4:-77403048 | Msa0704890:CDS |
| TAAAGATATCCTATTAGGAA+TGG | 0.555256 | 4_4:+77403387 | None:intergenic |
| GGTAGATCAAAGCGAATCAC+GGG | 0.561365 | 4_4:-77403599 | Msa0704890:CDS |
| AGGTAGATCAAAGCGAATCA+CGG | 0.562854 | 4_4:-77403600 | Msa0704890:CDS |
| CGTTGTGTCATTAATCATGT+TGG | 0.563914 | 4_4:+77402712 | None:intergenic |
| ATTGAACTGTTGAATGATTG+GGG | 0.569657 | 4_4:-77403217 | Msa0704890:CDS |
| CCTTATGCTGCCTATGAATG+TGG | 0.570956 | 4_4:-77401946 | Msa0704890:CDS |
| TGTTGTTCTTGCATTGGGAG+CGG | 0.571678 | 4_4:-77402546 | Msa0704890:CDS |
| GTACAGTGTTGTTCTTGCAT+TGG | 0.574507 | 4_4:-77402552 | Msa0704890:CDS |
| GAATTGGAAGTTAAACAGTA+AGG | 0.575075 | 4_4:-77403296 | Msa0704890:CDS |
| TATGTCCTTCGGCAGAAGAG+TGG | 0.576340 | 4_4:-77402784 | Msa0704890:CDS |
| ACATGGATGTATTAGAATGG+TGG | 0.578505 | 4_4:-77402097 | Msa0704890:CDS |
| TTGATGCATCAACCTGTGAA+AGG | 0.579104 | 4_4:-77402472 | Msa0704890:CDS |
| TGCTTGCTAATGTTTAATGT+CGG | 0.580071 | 4_4:-77401492 | Msa0704890:three_prime_UTR |
| TTATGAAGAGAATGGCTGAA+AGG | 0.593683 | 4_4:-77402607 | Msa0704890:CDS |
| TTCACACATCTCACCACCAG+TGG | 0.597954 | 4_4:+77403246 | None:intergenic |
| GCCTCAAGAACATTTGTAGG+AGG | 0.599415 | 4_4:+77403466 | None:intergenic |
| CTCGAAATCAGAAGCGACAG+TGG | 0.599746 | 4_4:+77402007 | None:intergenic |
| CGTGTTCTAGTTGATACTCT+GGG | 0.603053 | 4_4:-77402644 | Msa0704890:CDS |
| ATGTTGAAAATTTAATACGT+GGG | 0.609160 | 4_4:+77402516 | None:intergenic |
| TTTGATGATGACTGCGATGG+TGG | 0.609880 | 4_4:-77401691 | Msa0704890:CDS |
| CAAAGGGTAAATCAAGTGCA+AGG | 0.611050 | 4_4:+77403551 | None:intergenic |
| GAGAGAGCATCATGTTTGTG+AGG | 0.611082 | 4_4:-77402991 | Msa0704890:CDS |
| AAGACATGGATGTATTAGAA+TGG | 0.611743 | 4_4:-77402100 | Msa0704890:CDS |
| GGAGAGTCACCGTAAGGAGA+CGG | 0.613693 | 4_4:+77403918 | None:intergenic |
| GTGATGGAGAGTTCTTTCAC+GGG | 0.615672 | 4_4:-77403090 | Msa0704890:CDS |
| AGATGAAGTTATGAAGAGAA+TGG | 0.624092 | 4_4:-77402615 | Msa0704890:CDS |
| GACATCGGAGAGTCACCGTA+AGG | 0.624904 | 4_4:+77403912 | None:intergenic |
| AATGTTGAAAATTTAATACG+TGG | 0.625350 | 4_4:+77402515 | None:intergenic |
| AGTGTTTACCCTGCCACTGG+TGG | 0.629471 | 4_4:-77403259 | Msa0704890:CDS |
| ACATCTCACCACCAGTGGCA+GGG | 0.637351 | 4_4:+77403251 | None:intergenic |
| AAGTGAGAAATGAGGTACGC+GGG | 0.639129 | 4_4:+77403969 | None:intergenic |
| GAGGCATTCAAAGAGTAGAA+GGG | 0.646358 | 4_4:-77402972 | Msa0704890:CDS |
| TAAACCGTGAGATAAAGACT+TGG | 0.651980 | 4_4:+77402325 | None:intergenic |
| AATACCTGTACATGAGACAT+CGG | 0.655981 | 4_4:+77403897 | None:intergenic |
| TGGAGCACGAGGGAATGAGG+AGG | 0.698468 | 4_4:-77403522 | Msa0704890:CDS |
| ATTCGCGTCAACAAAATGAG+CGG | 0.717347 | 4_4:+77403315 | None:intergenic |
| GAGTCACCGTAAGGAGACGG+CGG | 0.730294 | 4_4:+77403921 | None:intergenic |
| AAAGTGAGAAATGAGGTACG+CGG | 0.757437 | 4_4:+77403968 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTATACCTATATAATTT+AGG | - | chr4_4:77401705-77401724 | Msa0704890:CDS | 10.0% |
| !! | TATTATACCTATATAATTTA+GGG | - | chr4_4:77401706-77401725 | Msa0704890:CDS | 10.0% |
| !!! | TGTAAGTTTATATATATTTT+TGG | - | chr4_4:77403182-77403201 | Msa0704890:CDS | 10.0% |
| !! | ATTATACCTATATAATTTAG+GGG | - | chr4_4:77401707-77401726 | Msa0704890:CDS | 15.0% |
| !!! | TATCTTTAACTTTTGATTTA+TGG | - | chr4_4:77402107-77402126 | Msa0704890:CDS | 15.0% |
| !!! | ATCTTTAACTTTTGATTTAT+GGG | - | chr4_4:77402108-77402127 | Msa0704890:CDS | 15.0% |
| !!! | TTTAGTTTATGATGATTTTT+TGG | - | chr4_4:77403841-77403860 | Msa0704890:intron | 15.0% |
| !!! | TGTTTTTAATTTTTATTGTG+TGG | - | chr4_4:77403957-77403976 | Msa0704890:five_prime_UTR | 15.0% |
| !! | GATAAGAACCTTATAAAAAA+AGG | + | chr4_4:77401620-77401639 | None:intergenic | 20.0% |
| !! | AAAGTTAAAGATATCCTATT+AGG | + | chr4_4:77402100-77402119 | None:intergenic | 20.0% |
| !! | TTTAAATTTGATTGTTGAAG+AGG | - | chr4_4:77402429-77402448 | Msa0704890:CDS | 20.0% |
| !! | TTAAATTTGATTGTTGAAGA+GGG | - | chr4_4:77402430-77402449 | Msa0704890:CDS | 20.0% |
| !! | AAAAAATACAAATTGGAAGT+AGG | + | chr4_4:77402796-77402815 | None:intergenic | 20.0% |
| !! | AACTTGCAAAAAATACAAAT+TGG | + | chr4_4:77402803-77402822 | None:intergenic | 20.0% |
| !!! | ATTTGTATTTTTTGCAAGTT+TGG | - | chr4_4:77402803-77402822 | Msa0704890:CDS | 20.0% |
| !! | ATGTTGAAAATTTAATACGT+GGG | + | chr4_4:77402966-77402985 | None:intergenic | 20.0% |
| !! | AATGTTGAAAATTTAATACG+TGG | + | chr4_4:77402967-77402986 | None:intergenic | 20.0% |
| !!! | ACGTATTAAATTTTCAACAT+TGG | - | chr4_4:77402966-77402985 | Msa0704890:CDS | 20.0% |
| !! | TTAAACAAATTCAAGATAGA+AGG | + | chr4_4:77403225-77403244 | None:intergenic | 20.0% |
| !! | GAAATTATGAATGAAATTGA+CGG | - | chr4_4:77403728-77403747 | Msa0704890:intron | 20.0% |
| !! | GTTTAGATTAAAACTATGTA+TGG | - | chr4_4:77403871-77403890 | Msa0704890:intron | 20.0% |
| !!! | TCAAACTGCCTTTTTTTATA+AGG | - | chr4_4:77401609-77401628 | Msa0704890:three_prime_UTR | 25.0% |
| ! | ATAAAATCCGTCAAAATTGA+CGG | + | chr4_4:77401669-77401688 | None:intergenic | 25.0% |
| !!! | TGACGGATTTTATATACTTT+AGG | - | chr4_4:77401676-77401695 | Msa0704890:exon | 25.0% |
| !!! | GACGGATTTTATATACTTTA+GGG | - | chr4_4:77401677-77401696 | Msa0704890:exon | 25.0% |
| ! | TTTAGTCCCCTAAATTATAT+AGG | + | chr4_4:77401716-77401735 | None:intergenic | 25.0% |
| ! | ATAATGCTGAAATGTAATCT+AGG | - | chr4_4:77401814-77401833 | Msa0704890:intron | 25.0% |
| !!! | TGATTTACCCTTTGATTTTT+TGG | - | chr4_4:77401937-77401956 | Msa0704890:CDS | 25.0% |
| ! | TAAAGATATCCTATTAGGAA+TGG | + | chr4_4:77402095-77402114 | None:intergenic | 25.0% |
| ! | TAAATTTGATTGTTGAAGAG+GGG | - | chr4_4:77402431-77402450 | Msa0704890:CDS | 25.0% |
| ! | ATTTAAGGAATGCATTGAAA+AGG | - | chr4_4:77402534-77402553 | Msa0704890:CDS | 25.0% |
| !!! | TTGAAAGTGCTCTTAAATAT+CGG | - | chr4_4:77402629-77402648 | Msa0704890:CDS | 25.0% |
| ! | TAATTATGAGTTATGTCCTT+CGG | - | chr4_4:77402684-77402703 | Msa0704890:CDS | 25.0% |
| ! | ATTACATTTCACAAGTGAAA+AGG | + | chr4_4:77403260-77403279 | None:intergenic | 25.0% |
| ! | TTTCACTTGTGAAATGTAAT+AGG | - | chr4_4:77403260-77403279 | Msa0704890:CDS | 25.0% |
| ! | TTACTTAGATGAATCAAGTT+TGG | - | chr4_4:77403341-77403360 | Msa0704890:CDS | 25.0% |
| ! | TCTACATATCAAAATTGAAG+AGG | + | chr4_4:77403680-77403699 | None:intergenic | 25.0% |
| !!! | ATTTTGATATGTAGATGAAG+AGG | - | chr4_4:77403685-77403704 | Msa0704890:intron | 25.0% |
| !!! | ATGATGATTTTTTGGCTTTA+TGG | - | chr4_4:77403849-77403868 | Msa0704890:intron | 25.0% |
| ! | TGAAAATCCGTCAATTTTGA+CGG | - | chr4_4:77401659-77401678 | Msa0704890:three_prime_UTR | 30.0% |
| TGATAGTTTAGAGACTATTC+TGG | - | chr4_4:77401748-77401767 | Msa0704890:CDS | 30.0% | |
| AGTCATGTCACAAGAAAAAA+TGG | - | chr4_4:77401844-77401863 | Msa0704890:intron | 30.0% | |
| AAAAATGGAATTTGACGATG+AGG | - | chr4_4:77401859-77401878 | Msa0704890:intron | 30.0% | |
| TCACTCATTTGTACATGAAA+GGG | - | chr4_4:77402041-77402060 | Msa0704890:CDS | 30.0% | |
| ATCTAAGCTTCAACAAGAAT+TGG | - | chr4_4:77402066-77402085 | Msa0704890:CDS | 30.0% | |
| GAATTGGAAGTTAAACAGTA+AGG | - | chr4_4:77402183-77402202 | Msa0704890:CDS | 30.0% | |
| TGATTGAACTGTTGAATGAT+TGG | - | chr4_4:77402260-77402279 | Msa0704890:intron | 30.0% | |
| GATTGAACTGTTGAATGATT+GGG | - | chr4_4:77402261-77402280 | Msa0704890:intron | 30.0% | |
| ATTGAACTGTTGAATGATTG+GGG | - | chr4_4:77402262-77402281 | Msa0704890:intron | 30.0% | |
| CAACAATTGAAATCTCATCT+TGG | - | chr4_4:77402346-77402365 | Msa0704890:CDS | 30.0% | |
| AGATGAAGTTATGAAGAGAA+TGG | - | chr4_4:77402864-77402883 | Msa0704890:CDS | 30.0% | |
| ! | TGAGCAAGTTTGACAAATTT+TGG | - | chr4_4:77402899-77402918 | Msa0704890:CDS | 30.0% |
| CTTCAATAACAAGTTGTTGA+TGG | + | chr4_4:77403299-77403318 | None:intergenic | 30.0% | |
| ! | TTTTCGTTGTTATGAAGACA+TGG | - | chr4_4:77403365-77403384 | Msa0704890:CDS | 30.0% |
| AAGACATGGATGTATTAGAA+TGG | - | chr4_4:77403379-77403398 | Msa0704890:CDS | 30.0% | |
| ATTTCCAGATCTATCAATCT+TGG | - | chr4_4:77403422-77403441 | Msa0704890:CDS | 30.0% | |
| ! | TTGTACAATTTTGTCAGCAA+TGG | - | chr4_4:77403582-77403601 | Msa0704890:CDS | 30.0% |
| TTAATAATTGAATAGACCCG+TGG | + | chr4_4:77403657-77403676 | None:intergenic | 30.0% | |
| AGAAGAGAAAGTGAGAAATG+AGG | + | chr4_4:77401521-77401540 | None:intergenic | 35.0% | |
| AATACCTGTACATGAGACAT+CGG | + | chr4_4:77401585-77401604 | None:intergenic | 35.0% | |
| CTGAAATGTAATCTAGGTTG+TGG | - | chr4_4:77401820-77401839 | Msa0704890:intron | 35.0% | |
| TCGTGCTCCAAAAAATCAAA+GGG | + | chr4_4:77401947-77401966 | None:intergenic | 35.0% | |
| !!! | TTTGATTTTTTGGAGCACGA+GGG | - | chr4_4:77401947-77401966 | Msa0704890:CDS | 35.0% |
| TAAGCCTCAAGAACATTTGT+AGG | + | chr4_4:77402019-77402038 | None:intergenic | 35.0% | |
| GTCACTCATTTGTACATGAA+AGG | - | chr4_4:77402040-77402059 | Msa0704890:CDS | 35.0% | |
| AATTGGCTACCATTCCTAAT+AGG | - | chr4_4:77402083-77402102 | Msa0704890:CDS | 35.0% | |
| !! | TCTCATCTTGGTTTGCAAAA+TGG | - | chr4_4:77402358-77402377 | Msa0704890:CDS | 35.0% |
| !! | CTCATCTTGGTTTGCAAAAT+GGG | - | chr4_4:77402359-77402378 | Msa0704890:CDS | 35.0% |
| ! | GCTCTCTCTAATTTTAGACA+CGG | + | chr4_4:77402476-77402495 | None:intergenic | 35.0% |
| GAGTAGAAGGGAGAAATTTA+AGG | - | chr4_4:77402519-77402538 | Msa0704890:CDS | 35.0% | |
| AAGGAATGCATTGAAAAGGT+TGG | - | chr4_4:77402538-77402557 | Msa0704890:CDS | 35.0% | |
| TGAAAGTCTTCACTTGTATG+AGG | - | chr4_4:77402660-77402679 | Msa0704890:CDS | 35.0% | |
| ATGTTGGCAGTTTCACAAAA+AGG | + | chr4_4:77402754-77402773 | None:intergenic | 35.0% | |
| ! | CGTTGTGTCATTAATCATGT+TGG | + | chr4_4:77402770-77402789 | None:intergenic | 35.0% |
| TTATGAAGAGAATGGCTGAA+AGG | - | chr4_4:77402872-77402891 | Msa0704890:CDS | 35.0% | |
| ! | TACAGTGTTGTTCTTGCATT+GGG | - | chr4_4:77402928-77402947 | Msa0704890:CDS | 35.0% |
| AAAGGAAGTTGCAACTAGTA+AGG | - | chr4_4:77403025-77403044 | Msa0704890:CDS | 35.0% | |
| ACGAAGTTGTACATGCTATT+TGG | - | chr4_4:77403048-77403067 | Msa0704890:CDS | 35.0% | |
| AACTCCAAGTCTTTATCTCA+CGG | - | chr4_4:77403150-77403169 | Msa0704890:CDS | 35.0% | |
| TAAACCGTGAGATAAAGACT+TGG | + | chr4_4:77403157-77403176 | None:intergenic | 35.0% | |
| AAGTGAAAAGGAAAGCAATG+AGG | + | chr4_4:77403248-77403267 | None:intergenic | 35.0% | |
| !! | CAACAACTTGTTATTGAAGC+TGG | - | chr4_4:77403300-77403319 | Msa0704890:CDS | 35.0% |
| ACATGGATGTATTAGAATGG+TGG | - | chr4_4:77403382-77403401 | Msa0704890:CDS | 35.0% | |
| !!! | TTCTGATTTCGAGTTTTGCA+TGG | - | chr4_4:77403482-77403501 | Msa0704890:CDS | 35.0% |
| !!! | TCTGATTTCGAGTTTTGCAT+GGG | - | chr4_4:77403483-77403502 | Msa0704890:CDS | 35.0% |
| !! | ATTCTAGCTTCCACATTCAT+AGG | + | chr4_4:77403546-77403565 | None:intergenic | 35.0% |
| GTTAACAACACGATTAGACA+TGG | + | chr4_4:77403635-77403654 | None:intergenic | 35.0% | |
| ! | TCTAATCGTGTTGTTAACCA+CGG | - | chr4_4:77403637-77403656 | Msa0704890:CDS | 35.0% |
| AATTGACGGCGATGAAAAAA+TGG | - | chr4_4:77403742-77403761 | Msa0704890:intron | 35.0% | |
| TAAAACTATGTATGGCTGCT+TGG | - | chr4_4:77403879-77403898 | Msa0704890:intron | 35.0% | |
| GATATGGTTTATGCACTTAC+TGG | - | chr4_4:77403901-77403920 | Msa0704890:intron | 35.0% | |
| AAAGTGAGAAATGAGGTACG+CGG | + | chr4_4:77401514-77401533 | None:intergenic | 40.0% | |
| TTTAGGGGACTAAAATGACG+AGG | - | chr4_4:77401722-77401741 | Msa0704890:CDS | 40.0% | |
| AGGTAGATCAAAGCGAATCA+CGG | - | chr4_4:77401879-77401898 | Msa0704890:intron | 40.0% | |
| CAAAGGGTAAATCAAGTGCA+AGG | + | chr4_4:77401931-77401950 | None:intergenic | 40.0% | |
| CTCGTGCTCCAAAAAATCAA+AGG | + | chr4_4:77401948-77401967 | None:intergenic | 40.0% | |
| !!! | CTTTGATTTTTTGGAGCACG+AGG | - | chr4_4:77401946-77401965 | Msa0704890:CDS | 40.0% |
| ! | GTAGGAGGTATAACAGCATT+TGG | + | chr4_4:77402001-77402020 | None:intergenic | 40.0% |
| ACCTCCTACAAATGTTCTTG+AGG | - | chr4_4:77402012-77402031 | Msa0704890:CDS | 40.0% | |
| TGAGCGGTCAAACAAATGTA+AGG | + | chr4_4:77402151-77402170 | None:intergenic | 40.0% | |
| ATTCGCGTCAACAAAATGAG+CGG | + | chr4_4:77402167-77402186 | None:intergenic | 40.0% | |
| ! | CTCATTTTGTTGACGCGAAT+TGG | - | chr4_4:77402167-77402186 | Msa0704890:CDS | 40.0% |
| !! | CAAAATGGGTTGTTGTGTGA+TGG | - | chr4_4:77402373-77402392 | Msa0704890:CDS | 40.0% |
| ! | TGTGATGGAGAGTTCTTTCA+CGG | - | chr4_4:77402388-77402407 | Msa0704890:CDS | 40.0% |
| ! | TGAGGCATTCAAAGAGTAGA+AGG | - | chr4_4:77402506-77402525 | Msa0704890:CDS | 40.0% |
| ! | GAGGCATTCAAAGAGTAGAA+GGG | - | chr4_4:77402507-77402526 | Msa0704890:CDS | 40.0% |
| ! | ACGTGTTCTAGTTGATACTC+TGG | - | chr4_4:77402834-77402853 | Msa0704890:CDS | 40.0% |
| ! | CGTGTTCTAGTTGATACTCT+GGG | - | chr4_4:77402835-77402854 | Msa0704890:CDS | 40.0% |
| ! | GTACAGTGTTGTTCTTGCAT+TGG | - | chr4_4:77402927-77402946 | Msa0704890:CDS | 40.0% |
| TTGATGCATCAACCTGTGAA+AGG | - | chr4_4:77403007-77403026 | Msa0704890:CDS | 40.0% | |
| TAGTTGCAACTTCCTTTCAC+AGG | + | chr4_4:77403022-77403041 | None:intergenic | 40.0% | |
| ! | TCTAGCCAAAGTACTTCTTC+TGG | - | chr4_4:77403078-77403097 | Msa0704890:CDS | 40.0% |
| ! | TGGCATGCAAAGTACTATTC+AGG | - | chr4_4:77403098-77403117 | Msa0704890:CDS | 40.0% |
| ! | GGCATGCAAAGTACTATTCA+GGG | - | chr4_4:77403099-77403118 | Msa0704890:CDS | 40.0% |
| !!! | GACTTGGAGTTTTTTTGCAC+TGG | + | chr4_4:77403141-77403160 | None:intergenic | 40.0% |
| CAAGCCAAGATTGATAGATC+TGG | + | chr4_4:77403429-77403448 | None:intergenic | 40.0% | |
| CTAGAATTTGTACTCGCAGT+TGG | - | chr4_4:77403559-77403578 | Msa0704890:CDS | 40.0% | |
| ! | CTAATCGTGTTGTTAACCAC+GGG | - | chr4_4:77403638-77403657 | Msa0704890:CDS | 40.0% |
| !!! | GATTTTGATGATGACTGCGA+TGG | - | chr4_4:77403785-77403804 | Msa0704890:intron | 40.0% |
| TATGTATGGCTGCTTGGATA+TGG | - | chr4_4:77403885-77403904 | Msa0704890:intron | 40.0% | |
| ATGGTTTATGCACTTACTGG+TGG | - | chr4_4:77403904-77403923 | Msa0704890:exon | 40.0% | |
| AAGTGAGAAATGAGGTACGC+GGG | + | chr4_4:77401513-77401532 | None:intergenic | 45.0% | |
| GGTAGATCAAAGCGAATCAC+GGG | - | chr4_4:77401880-77401899 | Msa0704890:intron | 45.0% | |
| GCCTCAAGAACATTTGTAGG+AGG | + | chr4_4:77402016-77402035 | None:intergenic | 45.0% | |
| ! | GTGATGGAGAGTTCTTTCAC+GGG | - | chr4_4:77402389-77402408 | Msa0704890:CDS | 45.0% |
| !! | GAGAGAGCATCATGTTTGTG+AGG | - | chr4_4:77402488-77402507 | Msa0704890:CDS | 45.0% |
| ! | TAGTTCTGTTCGCTTGCATC+AGG | - | chr4_4:77402570-77402589 | Msa0704890:CDS | 45.0% |
| TGTTGTTCTTGCATTGGGAG+CGG | - | chr4_4:77402933-77402952 | Msa0704890:CDS | 45.0% | |
| !! | GCATGCCAGAAGAAGTACTT+TGG | + | chr4_4:77403086-77403105 | None:intergenic | 45.0% |
| !!! | GGAGTTTTTTTGCACTGGCA+TGG | + | chr4_4:77403136-77403155 | None:intergenic | 45.0% |
| CCACATTCATAGGCAGCATA+AGG | + | chr4_4:77403536-77403555 | None:intergenic | 45.0% | |
| CCTTATGCTGCCTATGAATG+TGG | - | chr4_4:77403533-77403552 | Msa0704890:CDS | 45.0% | |
| !! | TTTGATGATGACTGCGATGG+TGG | - | chr4_4:77403788-77403807 | Msa0704890:intron | 45.0% |
| CTCTCCGATGTCTCATGTAC+AGG | - | chr4_4:77401578-77401597 | Msa0704890:three_prime_UTR | 50.0% | |
| ! | TCAAAGCGAATCACGGGTTG+TGG | - | chr4_4:77401886-77401905 | Msa0704890:intron | 50.0% |
| !!! | TTTTGGAGCACGAGGGAATG+AGG | - | chr4_4:77401954-77401973 | Msa0704890:CDS | 50.0% |
| TGTAGTGTTTACCCTGCCAC+TGG | - | chr4_4:77402217-77402236 | Msa0704890:intron | 50.0% | |
| TTCACACATCTCACCACCAG+TGG | + | chr4_4:77402236-77402255 | None:intergenic | 50.0% | |
| TATGTCCTTCGGCAGAAGAG+TGG | - | chr4_4:77402695-77402714 | Msa0704890:CDS | 50.0% | |
| ! | CTTTTCCACTCTTCTGCCGA+AGG | + | chr4_4:77402703-77402722 | None:intergenic | 50.0% |
| ! | GCACTGGCATGGTAGAAGAT+TGG | + | chr4_4:77403125-77403144 | None:intergenic | 50.0% |
| TCAGAAGCGACAGTGGCAAT+GGG | + | chr4_4:77403468-77403487 | None:intergenic | 50.0% | |
| ATCAGAAGCGACAGTGGCAA+TGG | + | chr4_4:77403469-77403488 | None:intergenic | 50.0% | |
| CTCGAAATCAGAAGCGACAG+TGG | + | chr4_4:77403475-77403494 | None:intergenic | 50.0% | |
| GGAGAGTCACCGTAAGGAGA+CGG | + | chr4_4:77401564-77401583 | None:intergenic | 55.0% | |
| GACATCGGAGAGTCACCGTA+AGG | + | chr4_4:77401570-77401589 | None:intergenic | 55.0% | |
| AGTGTTTACCCTGCCACTGG+TGG | - | chr4_4:77402220-77402239 | Msa0704890:intron | 55.0% | |
| ACATCTCACCACCAGTGGCA+GGG | + | chr4_4:77402231-77402250 | None:intergenic | 55.0% | |
| GAGTCACCGTAAGGAGACGG+CGG | + | chr4_4:77401561-77401580 | None:intergenic | 60.0% | |
| TGGAGCACGAGGGAATGAGG+AGG | - | chr4_4:77401957-77401976 | Msa0704890:CDS | 60.0% | |
| CACATCTCACCACCAGTGGC+AGG | + | chr4_4:77402232-77402251 | None:intergenic | 60.0% | |
| CTCTCGCCGCCGTCTCCTTA+CGG | - | chr4_4:77401552-77401571 | Msa0704890:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77401492 | 77404009 | 77401492 | ID=Msa0704890;Name=Msa0704890 |
| chr4_4 | mRNA | 77401492 | 77404009 | 77401492 | ID=Msa0704890-mRNA-1;Parent=Msa0704890;Name=Msa0704890-mRNA-1;_AED=0.22;_eAED=0.22;_QI=93|1|1|1|0.66|0.5|4|189|601 |
| chr4_4 | exon | 77401492 | 77401802 | 77401492 | ID=Msa0704890-mRNA-1:exon:24560;Parent=Msa0704890-mRNA-1 |
| chr4_4 | exon | 77401898 | 77402219 | 77401898 | ID=Msa0704890-mRNA-1:exon:24559;Parent=Msa0704890-mRNA-1 |
| chr4_4 | exon | 77402319 | 77403665 | 77402319 | ID=Msa0704890-mRNA-1:exon:24558;Parent=Msa0704890-mRNA-1 |
| chr4_4 | exon | 77403902 | 77404009 | 77403902 | ID=Msa0704890-mRNA-1:exon:24557;Parent=Msa0704890-mRNA-1 |
| chr4_4 | five_prime_UTR | 77403917 | 77404009 | 77403917 | ID=Msa0704890-mRNA-1:five_prime_utr;Parent=Msa0704890-mRNA-1 |
| chr4_4 | CDS | 77403902 | 77403916 | 77403902 | ID=Msa0704890-mRNA-1:cds;Parent=Msa0704890-mRNA-1 |
| chr4_4 | CDS | 77402319 | 77403665 | 77402319 | ID=Msa0704890-mRNA-1:cds;Parent=Msa0704890-mRNA-1 |
| chr4_4 | CDS | 77401898 | 77402219 | 77401898 | ID=Msa0704890-mRNA-1:cds;Parent=Msa0704890-mRNA-1 |
| chr4_4 | CDS | 77401681 | 77401802 | 77401681 | ID=Msa0704890-mRNA-1:cds;Parent=Msa0704890-mRNA-1 |
| chr4_4 | three_prime_UTR | 77401492 | 77401680 | 77401492 | ID=Msa0704890-mRNA-1:three_prime_utr;Parent=Msa0704890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
