AlfalfaGEDB | Msa1132480

M. sativa cultivar zhongmu-4 / Msa1132480

KEGG: K15334
GO: GO:0000049 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016427 GO:0016428 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363
PFAM: PF01189.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132480	XP_013446769.2	96.699	818	26	1	1	817	25	842	0.0	1644

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132480	sp\|Q5ZLV4\|NSUN2_CHICK	37.017	724	370	18	46	761	41	686	6.90e-144	446

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132480	A0A396GP25	96.699	818	26	1	1	817	25	842	0.0	1644

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa1132480	0.854011	1.634988e-61	-8.615850e-47
Msa0005840	Msa1132480	0.801234	9.914065e-49	-8.615850e-47
Msa0012940	Msa1132480	0.824665	7.138098e-54	-8.615850e-47
Msa0025720	Msa1132480	0.800874	1.174593e-48	-8.615850e-47
Msa0032920	Msa1132480	-0.802577	5.251342e-49	-8.615850e-47
Msa0035120	Msa1132480	0.809933	1.480967e-50	-8.615850e-47
Msa0037770	Msa1132480	0.816342	5.809013e-52	-8.615850e-47
Msa0043500	Msa1132480	0.821296	4.354771e-53	-8.615850e-47
Msa0043650	Msa1132480	0.808080	3.691625e-50	-8.615850e-47
Msa0045340	Msa1132480	0.822326	2.515652e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132480	MtrunA17_Chr8g0381831	96.699	818	26	1	1	817	25	842	0.0	1644
Msa1132480	MtrunA17_Chr3g0123801	66.794	783	222	9	1	767	1	761	0.0	1055
Msa1132480	MtrunA17_Chr3g0102711	30.876	217	118	6	166	378	296	484	3.80e-18	89.4
Msa1132480	MtrunA17_Chr5g0446691	33.728	169	86	7	185	351	340	484	9.68e-12	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1132480	AT2G22400.1	60.396	808	276	14	8	788	11	801	0.0	971
Msa1132480	AT4G40000.1	57.016	791	294	10	1	773	1	763	0.0	874
Msa1132480	AT4G40000.2	55.035	576	216	9	216	773	1	551	0.0	607
Msa1132480	AT4G26600.1	29.730	296	157	12	166	445	327	587	4.34e-17	86.3
Msa1132480	AT4G26600.3	29.730	296	157	12	166	445	327	587	5.03e-17	86.3
Msa1132480	AT5G55920.1	30.244	205	111	6	161	359	339	517	2.51e-16	84.0
Msa1132480	AT4G26600.8	31.313	198	108	4	166	359	327	500	3.69e-16	82.8
Msa1132480	AT4G26600.7	29.954	217	120	5	166	378	327	515	3.91e-16	82.8
Msa1132480	AT3G13180.1	31.361	169	90	4	185	351	334	478	5.16e-13	72.8

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Find 200 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGCTACAATATCA+GGG	0.582226	7_3:+85352874	Msa1132480:CDS
AAAAGGGAATTATGAAAGAA+TGG	0.453153	7_3:+85349886	Msa1132480:CDS
AAACATCTTCATGCCAACCG+AGG	0.713060	7_3:-85353115	None:intergenic
AAAGCAGGATCACTGCCTGA+TGG	0.612819	7_3:+85349595	Msa1132480:CDS
AAAGCTGCTGTGAGTTAGAG+AGG	0.571057	7_3:+85354400	Msa1132480:exon
AAAGTCTTGCAAGCAATTCT+TGG	0.304314	7_3:-85354261	None:intergenic
AAATGAAGCTGTGGTTGCAG+AGG	0.679409	7_3:+85351102	Msa1132480:CDS
AAATGGCTCTTCTGGGCAGG+TGG	0.556454	7_3:+85354303	Msa1132480:CDS
AACAATATCCTTGACTGACT+TGG	0.510238	7_3:-85353055	None:intergenic
AACACAGCAGAGAAGGTTCC+AGG	0.405306	7_3:+85352850	Msa1132480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTCAAACTACTACTCAT+TGG	+	chr7_3:85347334-85347353	Msa1132480:CDS	30.0%
TAATTGTTGATCCACAAGAA+TGG	+	chr7_3:85347409-85347428	Msa1132480:CDS	30.0%
AATTGTTGATCCACAAGAAT+GGG	+	chr7_3:85347410-85347429	Msa1132480:CDS	30.0%
TAGAATAGTAGCAGACTATT+TGG	+	chr7_3:85348431-85348450	Msa1132480:intron	30.0%
AGTCATACCATGTAGAAATA+AGG	-	chr7_3:85348566-85348585	None:intergenic	30.0%
AATTGGAAATATCACAAGAC+AGG	+	chr7_3:85348969-85348988	Msa1132480:CDS	30.0%
TAAAAAGTAGCAGTAACCTA+CGG	-	chr7_3:85349095-85349114	None:intergenic	30.0%
GAATTGAAAGAAAAGTGAAG+AGG	+	chr7_3:85349159-85349178	Msa1132480:intron	30.0%
CAAATTAAGCAAATCGAATC+AGG	-	chr7_3:85349469-85349488	None:intergenic	30.0%
GGTTGTAAAGAAAGTAGAAT+TGG	-	chr7_3:85350036-85350055	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	85347182	85354790	85347182	ID=Msa1132480;Name=Msa1132480
chr7_3	mRNA	85347182	85354790	85347182	ID=Msa1132480-mRNA-1;Parent=Msa1132480;Name=Msa1132480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=46\|1\|1\|1\|1\|1\|14\|373\|817
chr7_3	exon	85347182	85347490	85347182	ID=Msa1132480-mRNA-1:exon:25480;Parent=Msa1132480-mRNA-1
chr7_3	exon	85347581	85347647	85347581	ID=Msa1132480-mRNA-1:exon:25481;Parent=Msa1132480-mRNA-1
chr7_3	exon	85347736	85347851	85347736	ID=Msa1132480-mRNA-1:exon:25482;Parent=Msa1132480-mRNA-1
chr7_3	exon	85348939	85349005	85348939	ID=Msa1132480-mRNA-1:exon:25483;Parent=Msa1132480-mRNA-1
chr7_3	exon	85349372	85349420	85349372	ID=Msa1132480-mRNA-1:exon:25484;Parent=Msa1132480-mRNA-1
chr7_3	exon	85349536	85349621	85349536	ID=Msa1132480-mRNA-1:exon:25485;Parent=Msa1132480-mRNA-1
chr7_3	exon	85349764	85350014	85349764	ID=Msa1132480-mRNA-1:exon:25486;Parent=Msa1132480-mRNA-1
chr7_3	exon	85350092	85350147	85350092	ID=Msa1132480-mRNA-1:exon:25487;Parent=Msa1132480-mRNA-1
chr7_3	exon	85351038	85351123	85351038	ID=Msa1132480-mRNA-1:exon:25488;Parent=Msa1132480-mRNA-1
chr7_3	exon	85351421	85351513	85351421	ID=Msa1132480-mRNA-1:exon:25489;Parent=Msa1132480-mRNA-1
chr7_3	exon	85352159	85352486	85352159	ID=Msa1132480-mRNA-1:exon:25490;Parent=Msa1132480-mRNA-1
chr7_3	exon	85352644	85353137	85352644	ID=Msa1132480-mRNA-1:exon:25491;Parent=Msa1132480-mRNA-1
chr7_3	exon	85353834	85354068	85353834	ID=Msa1132480-mRNA-1:exon:25492;Parent=Msa1132480-mRNA-1
chr7_3	exon	85354155	85354790	85354155	ID=Msa1132480-mRNA-1:exon:25493;Parent=Msa1132480-mRNA-1
chr7_3	five_prime_UTR	85347182	85347227	85347182	ID=Msa1132480-mRNA-1:five_prime_utr;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85347228	85347490	85347228	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85347581	85347647	85347581	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85347736	85347851	85347736	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85348939	85349005	85348939	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85349372	85349420	85349372	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85349536	85349621	85349536	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85349764	85350014	85349764	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85350092	85350147	85350092	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85351038	85351123	85351038	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85351421	85351513	85351421	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85352159	85352486	85352159	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85352644	85353137	85352644	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85353834	85354068	85353834	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	CDS	85354155	85354417	85354155	ID=Msa1132480-mRNA-1:cds;Parent=Msa1132480-mRNA-1
chr7_3	three_prime_UTR	85354418	85354790	85354418	ID=Msa1132480-mRNA-1:three_prime_utr;Parent=Msa1132480-mRNA-1

Gene Sequence

>Msa1132480

ATGGGTAGAGGAAGGTCACGAACTCAAAGAAAGGACTTTCGTCAAAACAGAGAAAACGTTTGGAAGCGTTCGAAACCAGATCCAGACCCTTCCTTATCCTCCGAAAATTCTCAAACTACTACTCATTGGACTCCTTTCTTGACTCAAAACCCTTCCTTTGATTCTTATTACAAGGAACAGTTAATTGTTGATCCACAAGAATGGGATCAATTCATCGCAGTTCTCCGAACACCATTGCCTGCATCATTTAGAATCAATTCTAGTAGTCAATTTGCTGATGATATTCGTTCCCAATTGGAAAATGATTTCGTGCATTCACTTCGCGCTGAGGTTGCTGAAGGAGGTGAGACAGAGGCGATTCGGCCTTTGCCCTGGTATCCCGGGAACTTTGCTTGGCATTCAAATTTTTCGCGGATGCAGCTTAGGAAGAATCAAACATTGGAGAGGTTCCACGAATTTTTAAAGCTAGAAAATGAAATTGGAAATATCACAAGACAGGAAGCTGTTAGTATGGTTCCTCCCCTATTCTTGGATGTGCATTCAGACCATTTTGTACTTGACATGTGTGCTGCACCAGGTTCAAAAACATTCCAATTGCTCGAGACTATACACCAATCCACAAAAGCAGGATCACTGCCTGATGGAATGGTTGTAGCAAATGATCTTGATGTTAAAAGATGTAATCTTCTCATCCATCAAACAAAAAGAATGTCCACAGCCAACCTAATTGTTACTAATCATGAAGCACAACATTTCCCAGGATGCCGTTTAAAAGGGAATTATGAAAGAATGGAGTTAGATCACAATATTCACCAACTGTTATTTGATCGTGTTCTGTGCGATGTCCCGTGTAGTGGAGATGGTACACTTCGTAAGGCACCTGATATGTGGCGGAAATGGAATTCAGGGATGGGACAAGGGCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTTTACTCAAAATCGGGGGAAGAATGGTTTATTCAACGTGCTCAATGAATCCTATTGAAAATGAAGCTGTGGTTGCAGAGGTTTTGCGGAGGTGTGGTGAGTCTGTCAAACTTGTTGACGTGTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAAATGGAAGGTATATGACAAGAGCAGTTGGTTTGTCTCTTCCAAAGATGTTCCCAAGTTCCGTAGAAGTGTGATTCTTTCCAGTATGTTTCCTTCTGGCAAATGCTATCAGGATCTTGGCGATAGTAATTGTAATGTTGACATGGAAGATGACATTACTAGTGTGGAAAATGAAAAAACTGAAGATGGTATTGAAGCACTAGAGAATCCTGTGATGGAGGAGTCTGCTGAGGAAGTTTCAGATTTTCCTCTAGAGCATTGCATGAGGATAATGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTGCTGCAAAAAGTTTCTCCTCTGCCAGCTATTCTGGAAAAACCTAGCAAACAGAGTCTTGAGGATGCACAAGCACCGCACATGAATTCATCTGAAACTACACTTGAAGTCGTCAAAGCAGTTCCAGAGGAAAATGTGAATGATAATGCATCCCATACAGATGATTTGGAAGATAGTCCTCTAACACGTGAAGAACGGAATTCTGAGGAAACTGAAGAACCGCATAATGCACAAAACACAGCAGAGAAGGTTCCAGGTAAAAGAAAGCTACAATATCAGGGCAAATGGAGAGGTGTTGACCCTGTTGTCTTTTTTAAAGATGAAGCAATTGTTAACAGTATAAAGAATTTTTATGGAATCGATGAGCGTTTTCCATTTGATGGTCACCTTGTTACACGAAACATTGATAACAGTAATGCAAAAAGAATTTACTATGTCTCCAAGTCAGTCAAGGATATTGTTGCGTTGAACTTCTCGGTTGGTCAGCAACTGAAAATGACCTCGGTTGGCATGAAGATGTTTGAAAGACAAACAGCACGAGAAGGTGGCTCTTCACCATGTGCTTTCCGGATATCATCCGAAGGATTGCCCCTTATTCTTCCATACATAACCAAGCAAATTATACAGGCATCTCCCGAGGACTTCAAGCGTCTTCTGCAGGACAAAGATGTAAAATATTCAGATTTTGCTGATGCCGAGTTTGGTGAAAAGGCAGCAAACTTATTGCCTGGTTGTTGCGTGGTTATTATGGGTAAAGGGAATACAGTTGCAACAGAATCCCTCAAAGTTGACGAGTCAACAATAGCAATCGGATGCTGGAGGGGTAGGGCGAGGTTGTCCGTGATGGTCTCTGCAATGGACTGCCAAGAATTGCTTGCAAGACTTTTAATACGTCTAGGCACAGAAAATGGCTCTTCTGGGCAGGTGGACAATTCCTCTAACTATGTTGGAGGTGAAGCACAGGCTGTACAGGAGTTGAACGATAAAAGTGATAATGATTTGAAAGCTGCTGTGAGTTAG

Protein sequence

>Msa1132480

MGRGRSRTQRKDFRQNRENVWKRSKPDPDPSLSSENSQTTTHWTPFLTQNPSFDSYYKEQLIVDPQEWDQFIAVLRTPLPASFRINSSSQFADDIRSQLENDFVHSLRAEVAEGGETEAIRPLPWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLETIHQSTKAGSLPDGMVVANDLDVKRCNLLIHQTKRMSTANLIVTNHEAQHFPGCRLKGNYERMELDHNIHQLLFDRVLCDVPCSGDGTLRKAPDMWRKWNSGMGQGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGESVKLVDVSSELPQLIRRPGLKKWKVYDKSSWFVSSKDVPKFRRSVILSSMFPSGKCYQDLGDSNCNVDMEDDITSVENEKTEDGIEALENPVMEESAEEVSDFPLEHCMRIMPHDQNTGAFFIAVLQKVSPLPAILEKPSKQSLEDAQAPHMNSSETTLEVVKAVPEENVNDNASHTDDLEDSPLTREERNSEETEEPHNAQNTAEKVPGKRKLQYQGKWRGVDPVVFFKDEAIVNSIKNFYGIDERFPFDGHLVTRNIDNSNAKRIYYVSKSVKDIVALNFSVGQQLKMTSVGMKMFERQTAREGGSSPCAFRISSEGLPLILPYITKQIIQASPEDFKRLLQDKDVKYSDFADAEFGEKAANLLPGCCVVIMGKGNTVATESLKVDESTIAIGCWRGRARLSVMVSAMDCQELLARLLIRLGTENGSSGQVDNSSNYVGGEAQAVQELNDKSDNDLKAAVS*