AlfalfaGEDB | Msa0625140

M. sativa cultivar zhongmu-4 / Msa0625140

KEGG: K02135|K13413
GO: GO:0000275 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005756 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006839 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016021 GO:0016310 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0042776 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045261 GO:0045269 GO:0046034 GO:0046390 GO:0046483 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990542
PFAM: PF04627.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625140	AES86345.1	85.915	71	10	0	8	78	1	71	1.88e-37	130

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625140	sp\|Q96253\|ATP5E_ARATH	50.000	72	33	2	1	72	1	69	1.71e-18	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625140	G7JVK8	85.915	71	10	0	8	78	1	71	8.99e-38	130

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040690	Msa0625140	0.803648	3.152668e-49	-8.615850e-47
Msa0074320	Msa0625140	0.829652	4.566394e-55	-8.615850e-47
Msa0187690	Msa0625140	0.836148	1.108783e-56	-8.615850e-47
Msa0529680	Msa0625140	0.811496	6.801694e-51	-8.615850e-47
Msa0625140	Msa1013400	0.800465	1.422980e-48	-8.615850e-47
Msa0625140	Msa1043690	0.806443	8.205374e-50	-8.615850e-47
Msa0625140	Msa1081150	0.813278	2.774928e-51	-8.615850e-47
Msa0625140	Msa1104140	0.802913	4.476139e-49	-8.615850e-47
Msa0625140	Msa1292830	0.816296	5.948766e-52	-8.615850e-47
Msa0625140	Msa1363330	0.803135	4.027689e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625140	MtrunA17_Chr4g0000551	85.915	71	10	0	8	78	1	71	1.73e-41	130
Msa0625140	MtrunA17_Chr5g0417121	56.944	72	28	2	1	72	1	69	2.55e-22	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0625140	AT1G51650.1	50.000	72	33	2	1	72	1	69	1.74e-19	74.7

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Find 26 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGCAATTCCTAATAAGAT+TGG	0.392366	4_3:-4135335	None:intergenic
AATAAGATTGGCTGTCAAGT+TGG	0.465236	4_3:-4135323	None:intergenic
ACATGGATCGACAGTATTTC+CGG	0.360913	4_3:+4135421	Msa0625140:CDS
ACCATGCAAATCCAAAATTC+AGG	0.300935	4_3:-4137729	None:intergenic
ACTCAAATTCTCTCTCTTTC+TGG	0.136195	4_3:+4135373	Msa0625140:CDS
ACTTGACAGCCAATCTTATT+AGG	0.245215	4_3:+4135326	Msa0625140:CDS
ATACATCTAAAACTCTAGAA+AGG	0.525234	4_3:-4137669	None:intergenic
CATTCATACAGACATCCCAG+AGG	0.796801	4_3:+4137568	Msa0625140:CDS
CCATGCAAATCCAAAATTCA+GGG	0.535223	4_3:-4137728	None:intergenic
CGACGTCGTCTTGATTCCTC+TGG	0.371709	4_3:-4137584	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGCAATTCCTAATAAGAT+TGG	-	chr4_3:4135338-4135357	None:intergenic	30.0%
TCTTATTAGGAATTGCCTTA+AGG	+	chr4_3:4135339-4135358	Msa0625140:CDS	30.0%
AATAGAAGAAGAGAGAAAGA+GGG	-	chr4_3:4135463-4135482	None:intergenic	30.0%
AAATAGAAGAAGAGAGAAAG+AGG	-	chr4_3:4135464-4135483	None:intergenic	30.0%
GCCATAATGTTAACTTTCTT+AGG	+	chr4_3:4135681-4135700	Msa0625140:intron	30.0%
CCCTAAGAAAGTTAACATTA+TGG	-	chr4_3:4135685-4135704	None:intergenic	30.0%
CTGTAGTATCTTGTCTATAT+CGG	+	chr4_3:4135945-4135964	Msa0625140:intron	30.0%
AATAGAAAACACTGTCACAA+AGG	-	chr4_3:4136052-4136071	None:intergenic	30.0%
GAAGATAAAAATGCTAGCTA+GGG	-	chr4_3:4136226-4136245	None:intergenic	30.0%
AGAAGATAAAAATGCTAGCT+AGG	-	chr4_3:4136227-4136246	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	4135183	4137772	4135183	ID=Msa0625140;Name=Msa0625140
chr4_3	mRNA	4135183	4137772	4135183	ID=Msa0625140-mRNA-1;Parent=Msa0625140;Name=Msa0625140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=76\|1\|1\|1\|0\|0.5\|2\|162\|78
chr4_3	exon	4135183	4135451	4135183	ID=Msa0625140-mRNA-1:exon:984;Parent=Msa0625140-mRNA-1
chr4_3	exon	4137567	4137772	4137567	ID=Msa0625140-mRNA-1:exon:985;Parent=Msa0625140-mRNA-1
chr4_3	five_prime_UTR	4135183	4135258	4135183	ID=Msa0625140-mRNA-1:five_prime_utr;Parent=Msa0625140-mRNA-1
chr4_3	CDS	4135259	4135451	4135259	ID=Msa0625140-mRNA-1:cds;Parent=Msa0625140-mRNA-1
chr4_3	CDS	4137567	4137610	4137567	ID=Msa0625140-mRNA-1:cds;Parent=Msa0625140-mRNA-1
chr4_3	three_prime_UTR	4137611	4137772	4137611	ID=Msa0625140-mRNA-1:three_prime_utr;Parent=Msa0625140-mRNA-1

Gene Sequence	>Msa0625140 ATGGCGTCAGGCAGAGGAAAAGTAGCGATTTGGAGAGCAGCAGGGATGACATACACAGCATATTCCAACTTGACAGCCAATCTTATTAGGAATTGCCTTAAGGAACCTCACAAAACTCAAATTCTCTCTCTTTCTGGCGAGAACGTTCAGTACTTGCTTCCCACATGGATCGACAGTATTTCCGGAAAACTCACCATTCATACAGACATCCCAGAGGAATCAAGACGACGTCGCTGA
Protein sequence	>Msa0625140 MASGRGKVAIWRAAGMTYTAYSNLTANLIRNCLKEPHKTQILSLSGENVQYLLPTWIDSISGKLTIHTDIPEESRRRR*