Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625140 | AES86345.1 | 85.915 | 71 | 10 | 0 | 8 | 78 | 1 | 71 | 1.88e-37 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625140 | sp|Q96253|ATP5E_ARATH | 50.000 | 72 | 33 | 2 | 1 | 72 | 1 | 69 | 1.71e-18 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625140 | G7JVK8 | 85.915 | 71 | 10 | 0 | 8 | 78 | 1 | 71 | 8.99e-38 | 130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040690 | Msa0625140 | 0.803648 | 3.152668e-49 | -8.615850e-47 |
| Msa0074320 | Msa0625140 | 0.829652 | 4.566394e-55 | -8.615850e-47 |
| Msa0625140 | Msa1013400 | 0.800465 | 1.422980e-48 | -8.615850e-47 |
| Msa0625140 | Msa1043690 | 0.806443 | 8.205374e-50 | -8.615850e-47 |
| Msa0625140 | Msa1081150 | 0.813278 | 2.774928e-51 | -8.615850e-47 |
| Msa0625140 | Msa1104140 | 0.802913 | 4.476139e-49 | -8.615850e-47 |
| Msa0625140 | Msa1292830 | 0.816296 | 5.948766e-52 | -8.615850e-47 |
| Msa0625140 | Msa1363330 | 0.803135 | 4.027689e-49 | -8.615850e-47 |
| Msa0625140 | Msa1374120 | 0.810505 | 1.115058e-50 | -8.615850e-47 |
| Msa0625140 | Msa1382620 | 0.800765 | 1.236087e-48 | -8.615850e-47 |
| Msa0625140 | Msa1386600 | 0.803518 | 3.355264e-49 | -8.615850e-47 |
| Msa0625140 | Msa1414490 | 0.816275 | 6.015003e-52 | -8.615850e-47 |
| Msa0187690 | Msa0625140 | 0.836148 | 1.108783e-56 | -8.615850e-47 |
| Msa0529680 | Msa0625140 | 0.811496 | 6.801694e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625140 | MtrunA17_Chr4g0000551 | 85.915 | 71 | 10 | 0 | 8 | 78 | 1 | 71 | 1.73e-41 | 130 |
| Msa0625140 | MtrunA17_Chr5g0417121 | 56.944 | 72 | 28 | 2 | 1 | 72 | 1 | 69 | 2.55e-22 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625140 | AT1G51650.1 | 50.000 | 72 | 33 | 2 | 1 | 72 | 1 | 69 | 1.74e-19 | 74.7 |
Find 26 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCAAATTCTCTCTCTTTC+TGG | 0.136195 | 4_3:+4135373 | Msa0625140:CDS |
| GTGGCAGATGCCCTGAATTT+TGG | 0.222704 | 4_3:+4137718 | Msa0625140:three_prime_UTR |
| ACTTGACAGCCAATCTTATT+AGG | 0.245215 | 4_3:+4135326 | Msa0625140:CDS |
| ACCATGCAAATCCAAAATTC+AGG | 0.300935 | 4_3:-4137729 | None:intergenic |
| ACATGGATCGACAGTATTTC+CGG | 0.360913 | 4_3:+4135421 | Msa0625140:CDS |
| CGACGTCGTCTTGATTCCTC+TGG | 0.371709 | 4_3:-4137584 | None:intergenic |
| GCAGAGGAAAAGTAGCGATT+TGG | 0.379656 | 4_3:+4135269 | Msa0625140:CDS |
| AAGGCAATTCCTAATAAGAT+TGG | 0.392366 | 4_3:-4135335 | None:intergenic |
| TCTTATTAGGAATTGCCTTA+AGG | 0.405336 | 4_3:+4135339 | Msa0625140:CDS |
| CTCTGGGATGTCTGTATGAA+TGG | 0.437480 | 4_3:-4137567 | None:intergenic |
| GTAGCGATTTGGAGAGCAGC+AGG | 0.448954 | 4_3:+4135280 | Msa0625140:CDS |
| GAAGCTAATCTGAGATCTGC+TGG | 0.451980 | 4_3:+4137626 | Msa0625140:three_prime_UTR |
| AATAAGATTGGCTGTCAAGT+TGG | 0.465236 | 4_3:-4135323 | None:intergenic |
| GTAACGAAAACAAGTGTAAG+AGG | 0.479461 | 4_3:+4135194 | Msa0625140:five_prime_UTR |
| CGATCAATGGCGTCAGGCAG+AGG | 0.495109 | 4_3:+4135253 | Msa0625140:exon |
| GATAATCGATCAATGGCGTC+AGG | 0.508621 | 4_3:+4135247 | Msa0625140:exon |
| CGTATCAGATAATCGATCAA+TGG | 0.522049 | 4_3:+4135240 | Msa0625140:exon |
| ATACATCTAAAACTCTAGAA+AGG | 0.525234 | 4_3:-4137669 | None:intergenic |
| TCGCTGAAACGCATTCATGA+TGG | 0.530943 | 4_3:+4137604 | Msa0625140:exon |
| CCATGCAAATCCAAAATTCA+GGG | 0.535223 | 4_3:-4137728 | None:intergenic |
| TTCAGTACTTGCTTCCCACA+TGG | 0.547985 | 4_3:+4135404 | Msa0625140:CDS |
| GACGTCGTCTTGATTCCTCT+GGG | 0.578095 | 4_3:-4137583 | None:intergenic |
| GAAATACTGTCGATCCATGT+GGG | 0.608685 | 4_3:-4135418 | None:intergenic |
| TAGCGATTTGGAGAGCAGCA+GGG | 0.642009 | 4_3:+4135281 | Msa0625140:CDS |
| GGAAATACTGTCGATCCATG+TGG | 0.645523 | 4_3:-4135419 | None:intergenic |
| CATTCATACAGACATCCCAG+AGG | 0.796801 | 4_3:+4137568 | Msa0625140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGAATGTATTTTTTAAA+GGG | - | chr4_3:4137045-4137064 | None:intergenic | 10.0% |
| !!! | TTCATTTTCTTAAGTTATTA+CGG | + | chr4_3:4135909-4135928 | Msa0625140:intron | 15.0% |
| !!! | ATTGTTTTCATTATTATTAG+TGG | + | chr4_3:4136189-4136208 | Msa0625140:intron | 15.0% |
| !!! | ATTTTTCTTTGGAAAATAAT+TGG | + | chr4_3:4136925-4136944 | Msa0625140:intron | 15.0% |
| !!! | CATTTGAATGTATTTTTTAA+AGG | - | chr4_3:4137046-4137065 | None:intergenic | 15.0% |
| !! | TATACAAAACTAAATAAACT+TGG | - | chr4_3:4137501-4137520 | None:intergenic | 15.0% |
| !!! | TTTTTTTCTTTCTAAGAACT+CGG | - | chr4_3:4135587-4135606 | None:intergenic | 20.0% |
| !! | CCTATCATCTTAATTAATTA+GGG | - | chr4_3:4135777-4135796 | None:intergenic | 20.0% |
| !! | CCTAATTAATTAAGATGATA+GGG | + | chr4_3:4135775-4135794 | Msa0625140:intron | 20.0% |
| !!! | TCATTTTCTTAAGTTATTAC+GGG | + | chr4_3:4135910-4135929 | Msa0625140:intron | 20.0% |
| !!! | ATTTTGTCTCAAAAATATCA+TGG | - | chr4_3:4136325-4136344 | None:intergenic | 20.0% |
| !!! | CAATTTAGTCTAAAATATCA+TGG | - | chr4_3:4136445-4136464 | None:intergenic | 20.0% |
| !!! | ATATTTTAGACTAAATTGAG+AGG | + | chr4_3:4136447-4136466 | Msa0625140:intron | 20.0% |
| !! | TCAATTAAACAGAAATGAAA+TGG | - | chr4_3:4136685-4136704 | None:intergenic | 20.0% |
| !! | TTCATTTCTGTTTAATTGAT+TGG | + | chr4_3:4136686-4136705 | Msa0625140:intron | 20.0% |
| !!! | TTTTGGTAAAGATTTTTCTT+TGG | + | chr4_3:4136914-4136933 | Msa0625140:intron | 20.0% |
| !!! | AGAATTTTATCGCTTTTAAT+CGG | - | chr4_3:4136972-4136991 | None:intergenic | 20.0% |
| !! | ATTTCACTTTGAATCATAAT+TGG | + | chr4_3:4137089-4137108 | Msa0625140:intron | 20.0% |
| !!! | TTTAATGTGATGTTTTCATT+AGG | + | chr4_3:4137191-4137210 | Msa0625140:intron | 20.0% |
| !! | ATCATAACCAAAAAAGAAAA+CGG | - | chr4_3:4137696-4137715 | None:intergenic | 20.0% |
| ! | CCATAATGTTAACTTTCTTA+GGG | + | chr4_3:4135682-4135701 | Msa0625140:intron | 25.0% |
| ! | CCCTAATTAATTAAGATGAT+AGG | + | chr4_3:4135774-4135793 | Msa0625140:intron | 25.0% |
| ! | CCCTATCATCTTAATTAATT+AGG | - | chr4_3:4135778-4135797 | None:intergenic | 25.0% |
| !!! | GAACACATTTTTTAGATTGA+AGG | + | chr4_3:4135815-4135834 | Msa0625140:intron | 25.0% |
| ! | AGATGATTTAGAAACTACTT+TGG | + | chr4_3:4136005-4136024 | Msa0625140:intron | 25.0% |
| !!! | CATTTTCATTGATTTCTGAA+AGG | - | chr4_3:4136161-4136180 | None:intergenic | 25.0% |
| ! | TCATTTAATTACCTAACTTG+TGG | + | chr4_3:4136520-4136539 | Msa0625140:intron | 25.0% |
| ! | TTTGTGCTTTATGAAGAAAA+GGG | - | chr4_3:4136595-4136614 | None:intergenic | 25.0% |
| !! | TTTTGTGCTTTATGAAGAAA+AGG | - | chr4_3:4136596-4136615 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAACTTTTGTCAT+TGG | + | chr4_3:4136728-4136747 | Msa0625140:intron | 25.0% |
| !!! | CAATGAGTTTTGCTTTAAAT+TGG | + | chr4_3:4136992-4137011 | Msa0625140:intron | 25.0% |
| ! | TATTGATCTTAATCAGTTTG+AGG | - | chr4_3:4137128-4137147 | None:intergenic | 25.0% |
| ! | ATGAAAACATCACATTAAAG+TGG | - | chr4_3:4137190-4137209 | None:intergenic | 25.0% |
| !! | ATACATCTAAAACTCTAGAA+AGG | - | chr4_3:4137672-4137691 | None:intergenic | 25.0% |
| !! | ATGTATTCCGTTTTCTTTTT+TGG | + | chr4_3:4137686-4137705 | Msa0625140:three_prime_UTR | 25.0% |
| AAGGCAATTCCTAATAAGAT+TGG | - | chr4_3:4135338-4135357 | None:intergenic | 30.0% | |
| TCTTATTAGGAATTGCCTTA+AGG | + | chr4_3:4135339-4135358 | Msa0625140:CDS | 30.0% | |
| AATAGAAGAAGAGAGAAAGA+GGG | - | chr4_3:4135463-4135482 | None:intergenic | 30.0% | |
| AAATAGAAGAAGAGAGAAAG+AGG | - | chr4_3:4135464-4135483 | None:intergenic | 30.0% | |
| GCCATAATGTTAACTTTCTT+AGG | + | chr4_3:4135681-4135700 | Msa0625140:intron | 30.0% | |
| CCCTAAGAAAGTTAACATTA+TGG | - | chr4_3:4135685-4135704 | None:intergenic | 30.0% | |
| ! | CAAGCTTTGTAGAAACAAAT+GGG | - | chr4_3:4135722-4135741 | None:intergenic | 30.0% |
| ! | TCAAGCTTTGTAGAAACAAA+TGG | - | chr4_3:4135723-4135742 | None:intergenic | 30.0% |
| !! | ATTTGTTTCTACAAAGCTTG+AGG | + | chr4_3:4135722-4135741 | Msa0625140:intron | 30.0% |
| !! | TTTGTTTCTACAAAGCTTGA+GGG | + | chr4_3:4135723-4135742 | Msa0625140:intron | 30.0% |
| CTGTAGTATCTTGTCTATAT+CGG | + | chr4_3:4135945-4135964 | Msa0625140:intron | 30.0% | |
| AATAGAAAACACTGTCACAA+AGG | - | chr4_3:4136052-4136071 | None:intergenic | 30.0% | |
| GAAGATAAAAATGCTAGCTA+GGG | - | chr4_3:4136226-4136245 | None:intergenic | 30.0% | |
| AGAAGATAAAAATGCTAGCT+AGG | - | chr4_3:4136227-4136246 | None:intergenic | 30.0% | |
| ! | GAGAGGTTATTCTAAAGAAA+TGG | + | chr4_3:4136464-4136483 | Msa0625140:intron | 30.0% |
| AAAGGATTATCTCAGAACAT+GGG | - | chr4_3:4136619-4136638 | None:intergenic | 30.0% | |
| AAAAGGATTATCTCAGAACA+TGG | - | chr4_3:4136620-4136639 | None:intergenic | 30.0% | |
| ! | GATAATCCTTTTCTGTTTAG+TGG | + | chr4_3:4136628-4136647 | Msa0625140:intron | 30.0% |
| !!! | CTTTTAATCGGTTTGAAGTT+TGG | - | chr4_3:4136960-4136979 | None:intergenic | 30.0% |
| ! | AAATGACACTTACGTGATTT+TGG | + | chr4_3:4137061-4137080 | Msa0625140:intron | 30.0% |
| ! | ATCTTAATCAGTTTGAGGTT+TGG | - | chr4_3:4137123-4137142 | None:intergenic | 30.0% |
| ! | CCAATTTGAAGTAAAACTCA+AGG | - | chr4_3:4137159-4137178 | None:intergenic | 30.0% |
| ! | CCTTGAGTTTTACTTCAAAT+TGG | + | chr4_3:4137156-4137175 | Msa0625140:intron | 30.0% |
| !!! | TACAAGTGTACCTCTTTTTT+TGG | - | chr4_3:4137343-4137362 | None:intergenic | 30.0% |
| ! | TAAAAGAGGTACACTTGTTA+AGG | + | chr4_3:4137361-4137380 | Msa0625140:intron | 30.0% |
| TTAAGGATCTAAGGAGAAAA+GGG | + | chr4_3:4137378-4137397 | Msa0625140:intron | 30.0% | |
| !!! | TCTTTTTTGGTTATGATGTG+TGG | + | chr4_3:4137699-4137718 | Msa0625140:three_prime_UTR | 30.0% |
| GTAACGAAAACAAGTGTAAG+AGG | + | chr4_3:4135194-4135213 | Msa0625140:five_prime_UTR | 35.0% | |
| CGTATCAGATAATCGATCAA+TGG | + | chr4_3:4135240-4135259 | Msa0625140:exon | 35.0% | |
| ! | AATAAGATTGGCTGTCAAGT+TGG | - | chr4_3:4135326-4135345 | None:intergenic | 35.0% |
| ACTTGACAGCCAATCTTATT+AGG | + | chr4_3:4135326-4135345 | Msa0625140:CDS | 35.0% | |
| !! | GAGAGAATTTGAGTTTTGTG+AGG | - | chr4_3:4135367-4135386 | None:intergenic | 35.0% |
| ACTCAAATTCTCTCTCTTTC+TGG | + | chr4_3:4135373-4135392 | Msa0625140:CDS | 35.0% | |
| ATAGAAGAAGAGAGAAAGAG+GGG | - | chr4_3:4135462-4135481 | None:intergenic | 35.0% | |
| TTACCCTTCCTTCATTACTT+CGG | + | chr4_3:4135491-4135510 | Msa0625140:intron | 35.0% | |
| GCTTAAACAATGTCTCTTGT+TGG | + | chr4_3:4135641-4135660 | Msa0625140:intron | 35.0% | |
| TCTTGTTGGAACTTGAGTTT+GGG | + | chr4_3:4135655-4135674 | Msa0625140:intron | 35.0% | |
| !! | TTTTAGATTGAAGGTGTGAG+TGG | + | chr4_3:4135824-4135843 | Msa0625140:intron | 35.0% |
| !! | AACCACATATTTTGTTGTGC+CGG | - | chr4_3:4135876-4135895 | None:intergenic | 35.0% |
| CATCTCAAAATTTGTCCCAT+AGG | - | chr4_3:4135990-4136009 | None:intergenic | 35.0% | |
| ! | ACTACTTTGGAGAGAAATTG+AGG | + | chr4_3:4136018-4136037 | Msa0625140:intron | 35.0% |
| ! | CTACTTTGGAGAGAAATTGA+GGG | + | chr4_3:4136019-4136038 | Msa0625140:intron | 35.0% |
| AATACTCCACTTCACTTCAT+CGG | - | chr4_3:4136127-4136146 | None:intergenic | 35.0% | |
| ! | TTCTAAAGAAATGGTGAGTG+TGG | + | chr4_3:4136473-4136492 | Msa0625140:intron | 35.0% |
| TCATTGCCACTAAACAGAAA+AGG | - | chr4_3:4136637-4136656 | None:intergenic | 35.0% | |
| AGAAATGAAATGGAAACGCA+GGG | - | chr4_3:4136675-4136694 | None:intergenic | 35.0% | |
| TCGACAAATAGATGTTACAC+AGG | - | chr4_3:4136832-4136851 | None:intergenic | 35.0% | |
| ACATTCAACTCACACTTACA+TGG | + | chr4_3:4136891-4136910 | Msa0625140:intron | 35.0% | |
| ! | AACTCACACTTACATGGTTT+TGG | + | chr4_3:4136897-4136916 | Msa0625140:intron | 35.0% |
| ACTGTGTGAAACTGTGTTTA+AGG | - | chr4_3:4137293-4137312 | None:intergenic | 35.0% | |
| CACTTAGAAGCCAAAAAAAG+AGG | + | chr4_3:4137330-4137349 | Msa0625140:intron | 35.0% | |
| ! | AAGAGGTACACTTGTAAAAG+AGG | + | chr4_3:4137347-4137366 | Msa0625140:intron | 35.0% |
| ! | GTACACTTGTTAAGGATCTA+AGG | + | chr4_3:4137369-4137388 | Msa0625140:intron | 35.0% |
| GTTAAGGATCTAAGGAGAAA+AGG | + | chr4_3:4137377-4137396 | Msa0625140:intron | 35.0% | |
| CCATGCAAATCCAAAATTCA+GGG | - | chr4_3:4137731-4137750 | None:intergenic | 35.0% | |
| ACCATGCAAATCCAAAATTC+AGG | - | chr4_3:4137732-4137751 | None:intergenic | 35.0% | |
| !! | GAGTTTTGTGAGGTTCCTTA+AGG | - | chr4_3:4135357-4135376 | None:intergenic | 40.0% |
| GAAATACTGTCGATCCATGT+GGG | - | chr4_3:4135421-4135440 | None:intergenic | 40.0% | |
| ACATGGATCGACAGTATTTC+CGG | + | chr4_3:4135421-4135440 | Msa0625140:CDS | 40.0% | |
| TAGAAGAAGAGAGAAAGAGG+GGG | - | chr4_3:4135461-4135480 | None:intergenic | 40.0% | |
| CAACCGAAGTAATGAAGGAA+GGG | - | chr4_3:4135497-4135516 | None:intergenic | 40.0% | |
| TCAACCGAAGTAATGAAGGA+AGG | - | chr4_3:4135498-4135517 | None:intergenic | 40.0% | |
| TAGGTCAACCGAAGTAATGA+AGG | - | chr4_3:4135502-4135521 | None:intergenic | 40.0% | |
| TTCATTACTTCGGTTGACCT+AGG | + | chr4_3:4135501-4135520 | Msa0625140:intron | 40.0% | |
| GGCTTCAGACTATTGAGTAT+TGG | + | chr4_3:4135528-4135547 | Msa0625140:intron | 40.0% | |
| ! | TTTCTAAGAACTCGGTATCC+GGG | - | chr4_3:4135579-4135598 | None:intergenic | 40.0% |
| ! | CTTTCTAAGAACTCGGTATC+CGG | - | chr4_3:4135580-4135599 | None:intergenic | 40.0% |
| CTCTTGTTGGAACTTGAGTT+TGG | + | chr4_3:4135654-4135673 | Msa0625140:intron | 40.0% | |
| GCTTTGTAGAAACAAATGGG+TGG | - | chr4_3:4135719-4135738 | None:intergenic | 40.0% | |
| ! | TATCGGTGCTTCATAGATAG+AGG | + | chr4_3:4135962-4135981 | Msa0625140:intron | 40.0% |
| ! | ATCGGTGCTTCATAGATAGA+GGG | + | chr4_3:4135963-4135982 | Msa0625140:intron | 40.0% |
| TTCATAGATAGAGGGACCTA+TGG | + | chr4_3:4135971-4135990 | Msa0625140:intron | 40.0% | |
| TCATAGATAGAGGGACCTAT+GGG | + | chr4_3:4135972-4135991 | Msa0625140:intron | 40.0% | |
| AAGAAACCGATGAAGTGAAG+TGG | + | chr4_3:4136118-4136137 | Msa0625140:intron | 40.0% | |
| !! | AATTTCTGGTGCCACAAGTT+AGG | - | chr4_3:4136534-4136553 | None:intergenic | 40.0% |
| !! | GCGATGAGTACTGAAATTTC+TGG | - | chr4_3:4136548-4136567 | None:intergenic | 40.0% |
| TTCAGTACTCATCGCTACAA+TGG | + | chr4_3:4136553-4136572 | Msa0625140:intron | 40.0% | |
| TACTCATCGCTACAATGGTT+AGG | + | chr4_3:4136558-4136577 | Msa0625140:intron | 40.0% | |
| CAGAAATGAAATGGAAACGC+AGG | - | chr4_3:4136676-4136695 | None:intergenic | 40.0% | |
| AGGGTAACTTCACATTACAG+TGG | - | chr4_3:4137026-4137045 | None:intergenic | 40.0% | |
| GGCGTTAAATGCAAATCATC+AGG | - | chr4_3:4137480-4137499 | None:intergenic | 40.0% | |
| ! | CCCTGAATTTTGGATTTGCA+TGG | + | chr4_3:4137728-4137747 | Msa0625140:three_prime_UTR | 40.0% |
| GATAATCGATCAATGGCGTC+AGG | + | chr4_3:4135247-4135266 | Msa0625140:exon | 45.0% | |
| GCAGAGGAAAAGTAGCGATT+TGG | + | chr4_3:4135269-4135288 | Msa0625140:CDS | 45.0% | |
| TTCAGTACTTGCTTCCCACA+TGG | + | chr4_3:4135404-4135423 | Msa0625140:CDS | 45.0% | |
| GGAAATACTGTCGATCCATG+TGG | - | chr4_3:4135422-4135441 | None:intergenic | 45.0% | |
| ! | ATAGTCTGAAGCCAAGACCT+AGG | - | chr4_3:4135521-4135540 | None:intergenic | 45.0% |
| !! | CTATTGAGTATTGGAGCGCT+TGG | + | chr4_3:4135537-4135556 | Msa0625140:intron | 45.0% |
| ! | ATTGGAGCGCTTGGATTAAC+CGG | + | chr4_3:4135546-4135565 | Msa0625140:intron | 45.0% |
| ! | TTCTAAGAACTCGGTATCCG+GGG | - | chr4_3:4135578-4135597 | None:intergenic | 45.0% |
| GAGTGGTGTCTAACATGTGT+TGG | + | chr4_3:4135841-4135860 | Msa0625140:intron | 45.0% | |
| CACCGGCACAACAAAATATG+TGG | + | chr4_3:4135871-4135890 | Msa0625140:intron | 45.0% | |
| AGAAATGGTGAGTGTGGAGT+AGG | + | chr4_3:4136479-4136498 | Msa0625140:intron | 45.0% | |
| TGTGGAGTAGGAACTAGGAA+TGG | + | chr4_3:4136491-4136510 | Msa0625140:intron | 45.0% | |
| TGAAATGGAAACGCAGGGAA+GGG | - | chr4_3:4136670-4136689 | None:intergenic | 45.0% | |
| ATGAAATGGAAACGCAGGGA+AGG | - | chr4_3:4136671-4136690 | None:intergenic | 45.0% | |
| AGGATCTAAGGAGAAAAGGG+TGG | + | chr4_3:4137381-4137400 | Msa0625140:intron | 45.0% | |
| !! | CTCTGGGATGTCTGTATGAA+TGG | - | chr4_3:4137570-4137589 | None:intergenic | 45.0% |
| CATTCATACAGACATCCCAG+AGG | + | chr4_3:4137568-4137587 | Msa0625140:CDS | 45.0% | |
| TCGCTGAAACGCATTCATGA+TGG | + | chr4_3:4137604-4137623 | Msa0625140:exon | 45.0% | |
| ! | GAAGCTAATCTGAGATCTGC+TGG | + | chr4_3:4137626-4137645 | Msa0625140:three_prime_UTR | 45.0% |
| ! | TAGCGATTTGGAGAGCAGCA+GGG | + | chr4_3:4135281-4135300 | Msa0625140:CDS | 50.0% |
| ! | GGGGGTCTTACTGAGTTTTC+CGG | - | chr4_3:4135443-4135462 | None:intergenic | 50.0% |
| ACTTCGGTTGACCTAGGTCT+TGG | + | chr4_3:4135507-4135526 | Msa0625140:intron | 50.0% | |
| GTGAGTGTGGAGTAGGAACT+AGG | + | chr4_3:4136486-4136505 | Msa0625140:intron | 50.0% | |
| GACGTCGTCTTGATTCCTCT+GGG | - | chr4_3:4137586-4137605 | None:intergenic | 50.0% | |
| ! | GTGGCAGATGCCCTGAATTT+TGG | + | chr4_3:4137718-4137737 | Msa0625140:three_prime_UTR | 50.0% |
| ! | GTAGCGATTTGGAGAGCAGC+AGG | + | chr4_3:4135280-4135299 | Msa0625140:CDS | 55.0% |
| GGATTAACCGGTCCTTTCCC+CGG | + | chr4_3:4135558-4135577 | Msa0625140:intron | 55.0% | |
| AGAACTCGGTATCCGGGGAA+AGG | - | chr4_3:4135573-4135592 | None:intergenic | 55.0% | |
| ! | CATGTGTTGGTGTGCGACAC+CGG | + | chr4_3:4135854-4135873 | Msa0625140:intron | 55.0% |
| CGACGTCGTCTTGATTCCTC+TGG | - | chr4_3:4137587-4137606 | None:intergenic | 55.0% | |
| CGATCAATGGCGTCAGGCAG+AGG | + | chr4_3:4135253-4135272 | Msa0625140:exon | 60.0% | |
| TCGGTATCCGGGGAAAGGAC+CGG | - | chr4_3:4135568-4135587 | None:intergenic | 60.0% | |
| ! | AACGCAGGGAAGGGTGTGAG+TGG | - | chr4_3:4136661-4136680 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4135183 | 4137772 | 4135183 | ID=Msa0625140;Name=Msa0625140 |
| chr4_3 | mRNA | 4135183 | 4137772 | 4135183 | ID=Msa0625140-mRNA-1;Parent=Msa0625140;Name=Msa0625140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=76|1|1|1|0|0.5|2|162|78 |
| chr4_3 | exon | 4135183 | 4135451 | 4135183 | ID=Msa0625140-mRNA-1:exon:984;Parent=Msa0625140-mRNA-1 |
| chr4_3 | exon | 4137567 | 4137772 | 4137567 | ID=Msa0625140-mRNA-1:exon:985;Parent=Msa0625140-mRNA-1 |
| chr4_3 | five_prime_UTR | 4135183 | 4135258 | 4135183 | ID=Msa0625140-mRNA-1:five_prime_utr;Parent=Msa0625140-mRNA-1 |
| chr4_3 | CDS | 4135259 | 4135451 | 4135259 | ID=Msa0625140-mRNA-1:cds;Parent=Msa0625140-mRNA-1 |
| chr4_3 | CDS | 4137567 | 4137610 | 4137567 | ID=Msa0625140-mRNA-1:cds;Parent=Msa0625140-mRNA-1 |
| chr4_3 | three_prime_UTR | 4137611 | 4137772 | 4137611 | ID=Msa0625140-mRNA-1:three_prime_utr;Parent=Msa0625140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
