AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074320 MtrunA17_Chr1g0182051 96.667 120 4 0 23 142 3 122 4.71e-77 224
Msa0074320 MtrunA17_Chr4g0030641 89.431 123 13 0 20 142 1 123 2.85e-73 214
Msa0074320 MtrunA17_Chr1g0212921 91.667 120 10 0 23 142 2 121 1.55e-72 213
Msa0074320 MtrunA17_Chr4g0036351 87.395 119 15 0 24 142 3 121 2.22e-67 199
Msa0074320 MtrunA17_Chr7g0249361 85.366 123 18 0 20 142 46 168 2.31e-67 201
Msa0074320 MtrunA17_Chr1g0206641 88.889 36 4 0 33 68 5 40 8.20e-14 61.6
Msa0074320 MtrunA17_Chr5g0419591 87.879 33 4 0 86 118 2 34 5.22e-13 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074320 AT5G02610.1 88.525 122 14 0 20 141 1 122 1.39e-70 208
Msa0074320 AT3G09500.1 88.525 122 14 0 20 141 1 122 2.90e-70 207
Msa0074320 AT2G39390.1 88.525 122 14 0 20 141 1 122 4.21e-70 207
Msa0074320 AT3G55170.5 86.066 122 17 0 20 141 1 122 2.72e-68 202
Msa0074320 AT3G55170.2 86.066 122 17 0 20 141 1 122 2.72e-68 202
Msa0074320 AT3G55170.1 86.066 122 17 0 20 141 1 122 2.72e-68 202
Msa0074320 AT5G02610.2 74.483 145 14 1 20 141 1 145 9.06e-65 194
Msa0074320 AT3G55170.4 85.859 99 14 0 20 118 1 99 2.52e-52 161
Msa0074320 AT3G55170.3 85.859 99 14 0 20 118 1 99 2.52e-52 161

Find 32 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATACAAGTTAATGAATTA+TGG 0.205495 1_2:-48746175 Msa0074320:three_prime_UTR
AGTTCAATATTTCAAATAAC+TGG 0.271293 1_2:+48746426 None:intergenic
TGCATTTGAAGTGAGAATTA+AGG 0.291537 1_2:-48748268 Msa0074320:intron
CCATAATTCATTAACTTGTA+TGG 0.299454 1_2:+48746175 None:intergenic
CTGATAGCACGGGTCTTCTT+AGG 0.307833 1_2:+48747917 None:intergenic
CTGGTTCAGCAAATCAGCTT+TGG 0.322482 1_2:+48748224 None:intergenic
TTGATTGCATACTTTCTTAG+TGG 0.358328 1_2:+48746482 None:intergenic
GCTTACTTAATTTGTTTGTC+TGG 0.376358 1_2:-48746399 Msa0074320:three_prime_UTR
TGGTTCAGCAAATCAGCTTT+GGG 0.386643 1_2:+48748225 None:intergenic
AGGTGCACCGCCGGTGACTT+TGG 0.448506 1_2:+48748161 None:intergenic
AAAGTATGCAATCAAAGCTT+AGG 0.473169 1_2:-48746474 Msa0074320:exon
CATAATTCATTAACTTGTAT+GGG 0.474657 1_2:+48746176 None:intergenic
ATTAAACCTGGTGTTTGGTA+AGG 0.478429 1_2:+48747888 None:intergenic
CCGCCTTCAGATCCTTCAGC+TGG 0.492136 1_2:+48748205 None:intergenic
CTTCGAGTCGCCAAAGTCAC+CGG 0.499663 1_2:-48748171 Msa0074320:CDS
AGTGTTTAAGTAGTCTTGAA+AGG 0.499675 1_2:+48746208 None:intergenic
GAGCTTGTTAGGTGCACCGC+CGG 0.541755 1_2:+48748152 None:intergenic
GAATTAAGGTGTTCGAGTTG+AGG 0.547821 1_2:-48748254 Msa0074320:CDS
AATTCATTAACTTGTATGGG+AGG 0.562957 1_2:+48746179 None:intergenic
TGATTTGCTGAACCAGCTGA+AGG 0.570604 1_2:-48748217 Msa0074320:CDS
GACAGAGCGAGAGAAGAAGA+AGG 0.577238 1_2:-48746516 Msa0074320:CDS
ATCTATCTTGAGACTTCCGA+AGG 0.580195 1_2:-48746303 Msa0074320:three_prime_UTR
GAACCAGCTGAAGGATCTGA+AGG 0.580944 1_2:-48748208 Msa0074320:CDS
TAAGGCGTCTTCTGATAGCA+CGG 0.582904 1_2:+48747906 None:intergenic
TTCTTAGGACGAAGATCAAG+TGG 0.602701 1_2:+48747932 None:intergenic
AAGGCGTCTTCTGATAGCAC+GGG 0.605672 1_2:+48747907 None:intergenic
AAGACGCCTTACCAAACACC+AGG 0.624051 1_2:-48747894 Msa0074320:intron
ATGCAATCAAAGCTTAGGCG+AGG 0.662311 1_2:-48746469 Msa0074320:exon
ACGGCTATGGAGTGATAGTG+AGG 0.672283 1_2:+48748398 None:intergenic
CGAGTCGCCAAAGTCACCGG+CGG 0.675842 1_2:-48748168 Msa0074320:CDS
CCAGCTGAAGGATCTGAAGG+CGG 0.695519 1_2:-48748205 Msa0074320:CDS
GCAGAAAGCTGCGCTCAGAG+AGG 0.696591 1_2:-48747978 Msa0074320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAGTAAAAAAATTAAACC+TGG + chr1_2:48746823-48746842 None:intergenic 15.0%
!!! TTTTACTTAATTTGTTTGTT+TGG - chr1_2:48746833-48746852 Msa0074320:intron 15.0%
!! TGATTAGATAGTTATTATAA+TGG - chr1_2:48746911-48746930 Msa0074320:intron 15.0%
!! TATGTAATTCTTATAGAATT+TGG - chr1_2:48747029-48747048 Msa0074320:intron 15.0%
!!! TGTTTATCTATAAATTTTAC+TGG - chr1_2:48747303-48747322 Msa0074320:intron 15.0%
!!! ATTTTGAATGAACAAATATA+TGG + chr1_2:48747330-48747349 None:intergenic 15.0%
!! ATATATTTGTTCATTCAAAA+TGG - chr1_2:48747329-48747348 Msa0074320:intron 15.0%
!!! TTTTAAACAAAAACATGAAA+TGG + chr1_2:48747798-48747817 None:intergenic 15.0%
!!! ATAATTTTAACATAAACCTT+CGG + chr1_2:48748412-48748431 None:intergenic 15.0%
!! TTAAGTAAAAAAATTAAACC+TGG + chr1_2:48746823-48746842 None:intergenic 15.0%
!!! TTTTACTTAATTTGTTTGTT+TGG - chr1_2:48746833-48746852 Msa0074320:intron 15.0%
!! TGATTAGATAGTTATTATAA+TGG - chr1_2:48746911-48746930 Msa0074320:intron 15.0%
!! TATGTAATTCTTATAGAATT+TGG - chr1_2:48747029-48747048 Msa0074320:intron 15.0%
!!! TGTTTATCTATAAATTTTAC+TGG - chr1_2:48747303-48747322 Msa0074320:intron 15.0%
!!! ATTTTGAATGAACAAATATA+TGG + chr1_2:48747330-48747349 None:intergenic 15.0%
!! ATATATTTGTTCATTCAAAA+TGG - chr1_2:48747329-48747348 Msa0074320:intron 15.0%
!!! TTTTAAACAAAAACATGAAA+TGG + chr1_2:48747798-48747817 None:intergenic 15.0%
!!! ATAATTTTAACATAAACCTT+CGG + chr1_2:48748412-48748431 None:intergenic 15.0%
!!! TATGTATTGTTTACACATTT+TGG + chr1_2:48746571-48746590 None:intergenic 20.0%
!!! AATACATAATCGCTTTTATA+TGG - chr1_2:48746583-48746602 Msa0074320:intron 20.0%
!! AAAATTGTAATCAAATACGT+TGG - chr1_2:48747589-48747608 Msa0074320:intron 20.0%
!! AAAACTCACAAACAAAATAT+AGG + chr1_2:48747673-48747692 None:intergenic 20.0%
!!! ACTAAGGTTTTCAAATAAAA+AGG + chr1_2:48748051-48748070 None:intergenic 20.0%
!! AGTTCAATATTTCAAATAAC+TGG + chr1_2:48748273-48748292 None:intergenic 20.0%
!! AAATGTAACTAGACAAAAAT+TGG + chr1_2:48748341-48748360 None:intergenic 20.0%
!!! CATAATTCATTAACTTGTAT+GGG + chr1_2:48748523-48748542 None:intergenic 20.0%
!!! TATGTATTGTTTACACATTT+TGG + chr1_2:48746571-48746590 None:intergenic 20.0%
!!! AATACATAATCGCTTTTATA+TGG - chr1_2:48746583-48746602 Msa0074320:intron 20.0%
!! AAAATTGTAATCAAATACGT+TGG - chr1_2:48747589-48747608 Msa0074320:intron 20.0%
!! AAAACTCACAAACAAAATAT+AGG + chr1_2:48747673-48747692 None:intergenic 20.0%
!!! ACTAAGGTTTTCAAATAAAA+AGG + chr1_2:48748051-48748070 None:intergenic 20.0%
!! AGTTCAATATTTCAAATAAC+TGG + chr1_2:48748273-48748292 None:intergenic 20.0%
!! AAATGTAACTAGACAAAAAT+TGG + chr1_2:48748341-48748360 None:intergenic 20.0%
!!! CATAATTCATTAACTTGTAT+GGG + chr1_2:48748523-48748542 None:intergenic 20.0%
! ATGTGTTATATACTTTGTTC+GGG + chr1_2:48746230-48746249 None:intergenic 25.0%
! GATGTGTTATATACTTTGTT+CGG + chr1_2:48746231-48746250 None:intergenic 25.0%
!!! CATTTTTTTTGATTCAGGAA+CGG + chr1_2:48746320-48746339 None:intergenic 25.0%
! GTTCCTGAATCAAAAAAAAT+GGG - chr1_2:48746319-48746338 Msa0074320:three_prime_UTR 25.0%
!!! TTACCCATTTTTTTTGATTC+AGG + chr1_2:48746325-48746344 None:intergenic 25.0%
! AAAAAATTAAACCTGGTGTT+TGG + chr1_2:48746816-48746835 None:intergenic 25.0%
! ATAATTTAGCTAACATTGAG+AGG - chr1_2:48747170-48747189 Msa0074320:intron 25.0%
!! TAAACCAATTAACTGACTTT+GGG + chr1_2:48747281-48747300 None:intergenic 25.0%
! AAATAAAATTGACGAAGCAT+AGG + chr1_2:48747475-48747494 None:intergenic 25.0%
!!! GCTTCGTCAATTTTATTTAT+AGG - chr1_2:48747477-48747496 Msa0074320:intron 25.0%
!! TTTAAAAGTACAATTTCCAG+CGG - chr1_2:48747811-48747830 Msa0074320:intron 25.0%
!!! AAGTTTTACTTTTGCTTGTA+CGG - chr1_2:48748445-48748464 Msa0074320:intron 25.0%
!!! CCATAATTCATTAACTTGTA+TGG + chr1_2:48748524-48748543 None:intergenic 25.0%
! CCATACAAGTTAATGAATTA+TGG - chr1_2:48748521-48748540 Msa0074320:intron 25.0%
! ATGTGTTATATACTTTGTTC+GGG + chr1_2:48746230-48746249 None:intergenic 25.0%
! GATGTGTTATATACTTTGTT+CGG + chr1_2:48746231-48746250 None:intergenic 25.0%
!!! CATTTTTTTTGATTCAGGAA+CGG + chr1_2:48746320-48746339 None:intergenic 25.0%
! GTTCCTGAATCAAAAAAAAT+GGG - chr1_2:48746319-48746338 Msa0074320:three_prime_UTR 25.0%
!!! TTACCCATTTTTTTTGATTC+AGG + chr1_2:48746325-48746344 None:intergenic 25.0%
! AAAAAATTAAACCTGGTGTT+TGG + chr1_2:48746816-48746835 None:intergenic 25.0%
! ATAATTTAGCTAACATTGAG+AGG - chr1_2:48747170-48747189 Msa0074320:intron 25.0%
!! TAAACCAATTAACTGACTTT+GGG + chr1_2:48747281-48747300 None:intergenic 25.0%
! AAATAAAATTGACGAAGCAT+AGG + chr1_2:48747475-48747494 None:intergenic 25.0%
!!! GCTTCGTCAATTTTATTTAT+AGG - chr1_2:48747477-48747496 Msa0074320:intron 25.0%
!! TTTAAAAGTACAATTTCCAG+CGG - chr1_2:48747811-48747830 Msa0074320:intron 25.0%
!!! AAGTTTTACTTTTGCTTGTA+CGG - chr1_2:48748445-48748464 Msa0074320:intron 25.0%
!!! CCATAATTCATTAACTTGTA+TGG + chr1_2:48748524-48748543 None:intergenic 25.0%
! CCATACAAGTTAATGAATTA+TGG - chr1_2:48748521-48748540 Msa0074320:intron 25.0%
! TTATATACTTTGTTCGGGTT+GGG + chr1_2:48746225-48746244 None:intergenic 30.0%
ATAACACATCGTCGTTAAAA+TGG - chr1_2:48746241-48746260 Msa0074320:three_prime_UTR 30.0%
CGTTCCTGAATCAAAAAAAA+TGG - chr1_2:48746318-48746337 Msa0074320:three_prime_UTR 30.0%
AATTCTCACTTCAAATGCAA+TGG + chr1_2:48746427-48746446 None:intergenic 30.0%
! TGCATTTGAAGTGAGAATTA+AGG - chr1_2:48746428-48746447 Msa0074320:three_prime_UTR 30.0%
TTATATGGAAGCTGCTTATA+TGG - chr1_2:48746598-48746617 Msa0074320:intron 30.0%
!!! TTTTTTACAGCAAAGTTGTG+AGG - chr1_2:48746657-48746676 Msa0074320:intron 30.0%
AATCATTGCTACAACACTAT+TGG + chr1_2:48746896-48746915 None:intergenic 30.0%
!! TTGTAATTTGCTTCTGTATG+TGG - chr1_2:48746987-48747006 Msa0074320:intron 30.0%
! TAGCTATAATTTTCCGATGT+GGG + chr1_2:48747085-48747104 None:intergenic 30.0%
! ATAGCTATAATTTTCCGATG+TGG + chr1_2:48747086-48747105 None:intergenic 30.0%
TCATAGAGATATAACAAGTG+TGG - chr1_2:48747105-48747124 Msa0074320:intron 30.0%
GTTAGCTAAATTATCGATGT+GGG + chr1_2:48747164-48747183 None:intergenic 30.0%
TGTTAGCTAAATTATCGATG+TGG + chr1_2:48747165-48747184 None:intergenic 30.0%
! AAACCAATTAACTGACTTTG+GGG + chr1_2:48747280-48747299 None:intergenic 30.0%
! CTAAACCAATTAACTGACTT+TGG + chr1_2:48747282-48747301 None:intergenic 30.0%
TGCAAATTCTTGAAGAATTC+TGG - chr1_2:48747372-48747391 Msa0074320:intron 30.0%
TATTCTACATTGTAGCAGTT+AGG - chr1_2:48747527-48747546 Msa0074320:intron 30.0%
ATTCTACATTGTAGCAGTTA+GGG - chr1_2:48747528-48747547 Msa0074320:intron 30.0%
AGGGATTTAAACATTGGTAA+TGG - chr1_2:48747547-48747566 Msa0074320:intron 30.0%
! TTCGTATCAGTATCCTATTT+TGG - chr1_2:48747707-48747726 Msa0074320:intron 30.0%
! TCGTATCAGTATCCTATTTT+GGG - chr1_2:48747708-48747727 Msa0074320:intron 30.0%
AAATATATGCACGATTACTG+TGG - chr1_2:48747763-48747782 Msa0074320:intron 30.0%
! TTAAAAGTACAATTTCCAGC+GGG - chr1_2:48747812-48747831 Msa0074320:intron 30.0%
TATTATACACTGTAGCAGTT+AGG - chr1_2:48747837-48747856 Msa0074320:intron 30.0%
ATTATACACTGTAGCAGTTA+GGG - chr1_2:48747838-48747857 Msa0074320:intron 30.0%
TTACAAGGGAAACATCAAAT+GGG + chr1_2:48748082-48748101 None:intergenic 30.0%
TTTACAAGGGAAACATCAAA+TGG + chr1_2:48748083-48748102 None:intergenic 30.0%
GTGTTCAAGTCAATTTACAA+GGG + chr1_2:48748096-48748115 None:intergenic 30.0%
TTGATTGCATACTTTCTTAG+TGG + chr1_2:48748217-48748236 None:intergenic 30.0%
AAAGTATGCAATCAAAGCTT+AGG - chr1_2:48748222-48748241 Msa0074320:CDS 30.0%
!! GCTTACTTAATTTGTTTGTC+TGG - chr1_2:48748297-48748316 Msa0074320:intron 30.0%
AGACAAAAATTGGAATGCAT+AGG + chr1_2:48748331-48748350 None:intergenic 30.0%
! AGTGTTTAAGTAGTCTTGAA+AGG + chr1_2:48748491-48748510 None:intergenic 30.0%
!! AATTCATTAACTTGTATGGG+AGG + chr1_2:48748520-48748539 None:intergenic 30.0%
! TTATATACTTTGTTCGGGTT+GGG + chr1_2:48746225-48746244 None:intergenic 30.0%
ATAACACATCGTCGTTAAAA+TGG - chr1_2:48746241-48746260 Msa0074320:three_prime_UTR 30.0%
CGTTCCTGAATCAAAAAAAA+TGG - chr1_2:48746318-48746337 Msa0074320:three_prime_UTR 30.0%
AATTCTCACTTCAAATGCAA+TGG + chr1_2:48746427-48746446 None:intergenic 30.0%
! TGCATTTGAAGTGAGAATTA+AGG - chr1_2:48746428-48746447 Msa0074320:three_prime_UTR 30.0%
TTATATGGAAGCTGCTTATA+TGG - chr1_2:48746598-48746617 Msa0074320:intron 30.0%
!!! TTTTTTACAGCAAAGTTGTG+AGG - chr1_2:48746657-48746676 Msa0074320:intron 30.0%
AATCATTGCTACAACACTAT+TGG + chr1_2:48746896-48746915 None:intergenic 30.0%
!! TTGTAATTTGCTTCTGTATG+TGG - chr1_2:48746987-48747006 Msa0074320:intron 30.0%
! TAGCTATAATTTTCCGATGT+GGG + chr1_2:48747085-48747104 None:intergenic 30.0%
! ATAGCTATAATTTTCCGATG+TGG + chr1_2:48747086-48747105 None:intergenic 30.0%
TCATAGAGATATAACAAGTG+TGG - chr1_2:48747105-48747124 Msa0074320:intron 30.0%
GTTAGCTAAATTATCGATGT+GGG + chr1_2:48747164-48747183 None:intergenic 30.0%
TGTTAGCTAAATTATCGATG+TGG + chr1_2:48747165-48747184 None:intergenic 30.0%
! AAACCAATTAACTGACTTTG+GGG + chr1_2:48747280-48747299 None:intergenic 30.0%
! CTAAACCAATTAACTGACTT+TGG + chr1_2:48747282-48747301 None:intergenic 30.0%
TGCAAATTCTTGAAGAATTC+TGG - chr1_2:48747372-48747391 Msa0074320:intron 30.0%
TATTCTACATTGTAGCAGTT+AGG - chr1_2:48747527-48747546 Msa0074320:intron 30.0%
ATTCTACATTGTAGCAGTTA+GGG - chr1_2:48747528-48747547 Msa0074320:intron 30.0%
AGGGATTTAAACATTGGTAA+TGG - chr1_2:48747547-48747566 Msa0074320:intron 30.0%
! TTCGTATCAGTATCCTATTT+TGG - chr1_2:48747707-48747726 Msa0074320:intron 30.0%
! TCGTATCAGTATCCTATTTT+GGG - chr1_2:48747708-48747727 Msa0074320:intron 30.0%
AAATATATGCACGATTACTG+TGG - chr1_2:48747763-48747782 Msa0074320:intron 30.0%
! TTAAAAGTACAATTTCCAGC+GGG - chr1_2:48747812-48747831 Msa0074320:intron 30.0%
TATTATACACTGTAGCAGTT+AGG - chr1_2:48747837-48747856 Msa0074320:intron 30.0%
ATTATACACTGTAGCAGTTA+GGG - chr1_2:48747838-48747857 Msa0074320:intron 30.0%
TTACAAGGGAAACATCAAAT+GGG + chr1_2:48748082-48748101 None:intergenic 30.0%
TTTACAAGGGAAACATCAAA+TGG + chr1_2:48748083-48748102 None:intergenic 30.0%
GTGTTCAAGTCAATTTACAA+GGG + chr1_2:48748096-48748115 None:intergenic 30.0%
TTGATTGCATACTTTCTTAG+TGG + chr1_2:48748217-48748236 None:intergenic 30.0%
AAAGTATGCAATCAAAGCTT+AGG - chr1_2:48748222-48748241 Msa0074320:CDS 30.0%
!! GCTTACTTAATTTGTTTGTC+TGG - chr1_2:48748297-48748316 Msa0074320:intron 30.0%
AGACAAAAATTGGAATGCAT+AGG + chr1_2:48748331-48748350 None:intergenic 30.0%
! AGTGTTTAAGTAGTCTTGAA+AGG + chr1_2:48748491-48748510 None:intergenic 30.0%
!! AATTCATTAACTTGTATGGG+AGG + chr1_2:48748520-48748539 None:intergenic 30.0%
GTTATATACTTTGTTCGGGT+TGG + chr1_2:48746226-48746245 None:intergenic 35.0%
!!! TCCTTGCGATTTTAACTGTA+GGG - chr1_2:48746264-48746283 Msa0074320:three_prime_UTR 35.0%
!! TGGTAATCGCGTTTTGTTAA+TGG - chr1_2:48746618-48746637 Msa0074320:intron 35.0%
ATTAAACCTGGTGTTTGGTA+AGG + chr1_2:48746811-48746830 None:intergenic 35.0%
TGTTTGTTTGGTTGTGTTTC+TGG - chr1_2:48746845-48746864 Msa0074320:intron 35.0%
ATTTGCTTCTGTATGTGGTA+TGG - chr1_2:48746992-48747011 Msa0074320:intron 35.0%
AGCTATCCAATGTGTATCAA+AGG + chr1_2:48747230-48747249 None:intergenic 35.0%
! GTTCATTCAAAATGGTTTGC+TGG - chr1_2:48747337-48747356 Msa0074320:intron 35.0%
GCAGTTAGGGATTTAAACAT+TGG - chr1_2:48747541-48747560 Msa0074320:intron 35.0%
GTAATCAAATACGTTGGATG+TGG - chr1_2:48747595-48747614 Msa0074320:intron 35.0%
TGTTGTAGTCATATTGCAGT+CGG - chr1_2:48747621-48747640 Msa0074320:intron 35.0%
!!! AGGGTTTTAGATAGAGGTAA+TGG - chr1_2:48747857-48747876 Msa0074320:intron 35.0%
! ATAGAGGTAATGGTTGTGTA+GGG - chr1_2:48747867-48747886 Msa0074320:intron 35.0%
TAGGGTTTCATGATATTGCA+GGG - chr1_2:48747885-48747904 Msa0074320:intron 35.0%
CAGAAAATTGTAGTCAGATG+CGG - chr1_2:48747921-48747940 Msa0074320:CDS 35.0%
! AACAATGGGACTGCAATTTT+AGG + chr1_2:48747956-48747975 None:intergenic 35.0%
GTTATCTCTCCAACAACAAT+GGG + chr1_2:48747970-48747989 None:intergenic 35.0%
TAACGAAAACTCTGATGTTG+TGG - chr1_2:48747986-48748005 Msa0074320:CDS 35.0%
CGTGTTCAAGTCAATTTACA+AGG + chr1_2:48748097-48748116 None:intergenic 35.0%
GTTATATACTTTGTTCGGGT+TGG + chr1_2:48746226-48746245 None:intergenic 35.0%
!!! TCCTTGCGATTTTAACTGTA+GGG - chr1_2:48746264-48746283 Msa0074320:three_prime_UTR 35.0%
!! TGGTAATCGCGTTTTGTTAA+TGG - chr1_2:48746618-48746637 Msa0074320:intron 35.0%
ATTAAACCTGGTGTTTGGTA+AGG + chr1_2:48746811-48746830 None:intergenic 35.0%
TGTTTGTTTGGTTGTGTTTC+TGG - chr1_2:48746845-48746864 Msa0074320:intron 35.0%
ATTTGCTTCTGTATGTGGTA+TGG - chr1_2:48746992-48747011 Msa0074320:intron 35.0%
AGCTATCCAATGTGTATCAA+AGG + chr1_2:48747230-48747249 None:intergenic 35.0%
! GTTCATTCAAAATGGTTTGC+TGG - chr1_2:48747337-48747356 Msa0074320:intron 35.0%
GCAGTTAGGGATTTAAACAT+TGG - chr1_2:48747541-48747560 Msa0074320:intron 35.0%
GTAATCAAATACGTTGGATG+TGG - chr1_2:48747595-48747614 Msa0074320:intron 35.0%
TGTTGTAGTCATATTGCAGT+CGG - chr1_2:48747621-48747640 Msa0074320:intron 35.0%
!!! AGGGTTTTAGATAGAGGTAA+TGG - chr1_2:48747857-48747876 Msa0074320:intron 35.0%
! ATAGAGGTAATGGTTGTGTA+GGG - chr1_2:48747867-48747886 Msa0074320:intron 35.0%
TAGGGTTTCATGATATTGCA+GGG - chr1_2:48747885-48747904 Msa0074320:intron 35.0%
CAGAAAATTGTAGTCAGATG+CGG - chr1_2:48747921-48747940 Msa0074320:CDS 35.0%
! AACAATGGGACTGCAATTTT+AGG + chr1_2:48747956-48747975 None:intergenic 35.0%
GTTATCTCTCCAACAACAAT+GGG + chr1_2:48747970-48747989 None:intergenic 35.0%
TAACGAAAACTCTGATGTTG+TGG - chr1_2:48747986-48748005 Msa0074320:CDS 35.0%
CGTGTTCAAGTCAATTTACA+AGG + chr1_2:48748097-48748116 None:intergenic 35.0%
! GTTTGGGCTCGAAAACTTTT+GGG + chr1_2:48746181-48746200 None:intergenic 40.0%
!!! GTCCTTGCGATTTTAACTGT+AGG - chr1_2:48746263-48746282 Msa0074320:three_prime_UTR 40.0%
ACCCTACAGTTAAAATCGCA+AGG + chr1_2:48746268-48746287 None:intergenic 40.0%
!! TTTTGATTCAGGAACGGCTA+TGG + chr1_2:48746314-48746333 None:intergenic 40.0%
!! GAATTAAGGTGTTCGAGTTG+AGG - chr1_2:48746442-48746461 Msa0074320:three_prime_UTR 40.0%
TGGTTCAGCAAATCAGCTTT+GGG + chr1_2:48746474-48746493 None:intergenic 40.0%
!! CACATTTTGGAGAGCTTGTT+AGG + chr1_2:48746558-48746577 None:intergenic 40.0%
TTCTTAGGACGAAGATCAAG+TGG + chr1_2:48746767-48746786 None:intergenic 40.0%
TTCTGTATGTGGTATGGACT+CGG - chr1_2:48746998-48747017 Msa0074320:intron 40.0%
TACAAATTAGCAGCCCACAT+CGG - chr1_2:48747069-48747088 Msa0074320:intron 40.0%
ATCCAATGTGTATCAAAGGC+TGG + chr1_2:48747226-48747245 None:intergenic 40.0%
!! CACATTGGATAGCTTTGAAC+TGG - chr1_2:48747236-48747255 Msa0074320:intron 40.0%
!! TTGGATAGCTTTGAACTGGT+TGG - chr1_2:48747240-48747259 Msa0074320:intron 40.0%
ACACCCCAAAGTCAGTTAAT+TGG - chr1_2:48747274-48747293 Msa0074320:intron 40.0%
ATTCGCAGAAGTAACGATAC+CGG - chr1_2:48747402-48747421 Msa0074320:intron 40.0%
ATGGTTGTGTCGCAATTATG+TGG - chr1_2:48747566-48747585 Msa0074320:intron 40.0%
CAAAATATAGGCTGCAGCAT+CGG + chr1_2:48747661-48747680 None:intergenic 40.0%
CACATGCTGAAACCCAAAAT+AGG + chr1_2:48747723-48747742 None:intergenic 40.0%
ACAGTGTATAATATACCCGC+TGG + chr1_2:48747830-48747849 None:intergenic 40.0%
!!! GCAGTTAGGGTTTTAGATAG+AGG - chr1_2:48747851-48747870 Msa0074320:intron 40.0%
! GATAGAGGTAATGGTTGTGT+AGG - chr1_2:48747866-48747885 Msa0074320:intron 40.0%
GTAGGGTTTCATGATATTGC+AGG - chr1_2:48747884-48747903 Msa0074320:intron 40.0%
AATTGCAGTCCCATTGTTGT+TGG - chr1_2:48747958-48747977 Msa0074320:CDS 40.0%
CGTTATCTCTCCAACAACAA+TGG + chr1_2:48747971-48747990 None:intergenic 40.0%
CAAATGGGTGAATGCTACTA+AGG + chr1_2:48748067-48748086 None:intergenic 40.0%
AGATGATGCATAAATACCGC+CGG + chr1_2:48748126-48748145 None:intergenic 40.0%
! CATCTTACCAGCCTTTTGTT+TGG - chr1_2:48748141-48748160 Msa0074320:intron 40.0%
ATCTATCTTGAGACTTCCGA+AGG - chr1_2:48748393-48748412 Msa0074320:CDS 40.0%
! GTTTGGGCTCGAAAACTTTT+GGG + chr1_2:48746181-48746200 None:intergenic 40.0%
!!! GTCCTTGCGATTTTAACTGT+AGG - chr1_2:48746263-48746282 Msa0074320:three_prime_UTR 40.0%
ACCCTACAGTTAAAATCGCA+AGG + chr1_2:48746268-48746287 None:intergenic 40.0%
!! TTTTGATTCAGGAACGGCTA+TGG + chr1_2:48746314-48746333 None:intergenic 40.0%
!! GAATTAAGGTGTTCGAGTTG+AGG - chr1_2:48746442-48746461 Msa0074320:three_prime_UTR 40.0%
TGGTTCAGCAAATCAGCTTT+GGG + chr1_2:48746474-48746493 None:intergenic 40.0%
!! CACATTTTGGAGAGCTTGTT+AGG + chr1_2:48746558-48746577 None:intergenic 40.0%
TTCTTAGGACGAAGATCAAG+TGG + chr1_2:48746767-48746786 None:intergenic 40.0%
TTCTGTATGTGGTATGGACT+CGG - chr1_2:48746998-48747017 Msa0074320:intron 40.0%
TACAAATTAGCAGCCCACAT+CGG - chr1_2:48747069-48747088 Msa0074320:intron 40.0%
ATCCAATGTGTATCAAAGGC+TGG + chr1_2:48747226-48747245 None:intergenic 40.0%
!! CACATTGGATAGCTTTGAAC+TGG - chr1_2:48747236-48747255 Msa0074320:intron 40.0%
!! TTGGATAGCTTTGAACTGGT+TGG - chr1_2:48747240-48747259 Msa0074320:intron 40.0%
ACACCCCAAAGTCAGTTAAT+TGG - chr1_2:48747274-48747293 Msa0074320:intron 40.0%
ATTCGCAGAAGTAACGATAC+CGG - chr1_2:48747402-48747421 Msa0074320:intron 40.0%
ATGGTTGTGTCGCAATTATG+TGG - chr1_2:48747566-48747585 Msa0074320:intron 40.0%
CAAAATATAGGCTGCAGCAT+CGG + chr1_2:48747661-48747680 None:intergenic 40.0%
CACATGCTGAAACCCAAAAT+AGG + chr1_2:48747723-48747742 None:intergenic 40.0%
ACAGTGTATAATATACCCGC+TGG + chr1_2:48747830-48747849 None:intergenic 40.0%
!!! GCAGTTAGGGTTTTAGATAG+AGG - chr1_2:48747851-48747870 Msa0074320:intron 40.0%
! GATAGAGGTAATGGTTGTGT+AGG - chr1_2:48747866-48747885 Msa0074320:intron 40.0%
GTAGGGTTTCATGATATTGC+AGG - chr1_2:48747884-48747903 Msa0074320:intron 40.0%
AATTGCAGTCCCATTGTTGT+TGG - chr1_2:48747958-48747977 Msa0074320:CDS 40.0%
CGTTATCTCTCCAACAACAA+TGG + chr1_2:48747971-48747990 None:intergenic 40.0%
CAAATGGGTGAATGCTACTA+AGG + chr1_2:48748067-48748086 None:intergenic 40.0%
AGATGATGCATAAATACCGC+CGG + chr1_2:48748126-48748145 None:intergenic 40.0%
! CATCTTACCAGCCTTTTGTT+TGG - chr1_2:48748141-48748160 Msa0074320:intron 40.0%
ATCTATCTTGAGACTTCCGA+AGG - chr1_2:48748393-48748412 Msa0074320:CDS 40.0%
! GGTTTGGGCTCGAAAACTTT+TGG + chr1_2:48746182-48746201 None:intergenic 45.0%
! AGTAACAATCCGGTCGGTTT+GGG + chr1_2:48746197-48746216 None:intergenic 45.0%
CTGGTTCAGCAAATCAGCTT+TGG + chr1_2:48746475-48746494 None:intergenic 45.0%
!! TGATTTGCTGAACCAGCTGA+AGG - chr1_2:48746479-48746498 Msa0074320:CDS 45.0%
! TAAGGCGTCTTCTGATAGCA+CGG + chr1_2:48746793-48746812 None:intergenic 45.0%
TCTGTATGTGGTATGGACTC+GGG - chr1_2:48746999-48747018 Msa0074320:intron 45.0%
GACCAGCCTTTGATACACAT+TGG - chr1_2:48747221-48747240 Msa0074320:intron 45.0%
GCAGATTGGTACTCATGTAC+CGG + chr1_2:48747424-48747443 None:intergenic 45.0%
GGTACATGAGTACCAATCTG+CGG - chr1_2:48747423-48747442 Msa0074320:intron 45.0%
CAGAATTTGCAGGACCACTT+GGG + chr1_2:48747450-48747469 None:intergenic 45.0%
ACAGAATTTGCAGGACCACT+TGG + chr1_2:48747451-48747470 None:intergenic 45.0%
AGCATAGGCACAGAATTTGC+AGG + chr1_2:48747460-48747479 None:intergenic 45.0%
TGACTTGAACACGTGTTTCC+CGG - chr1_2:48748104-48748123 Msa0074320:intron 45.0%
GATGATGCATAAATACCGCC+GGG + chr1_2:48748125-48748144 None:intergenic 45.0%
ATGCAATCAAAGCTTAGGCG+AGG - chr1_2:48748227-48748246 Msa0074320:CDS 45.0%
! GGTTTGGGCTCGAAAACTTT+TGG + chr1_2:48746182-48746201 None:intergenic 45.0%
! AGTAACAATCCGGTCGGTTT+GGG + chr1_2:48746197-48746216 None:intergenic 45.0%
CTGGTTCAGCAAATCAGCTT+TGG + chr1_2:48746475-48746494 None:intergenic 45.0%
!! TGATTTGCTGAACCAGCTGA+AGG - chr1_2:48746479-48746498 Msa0074320:CDS 45.0%
! TAAGGCGTCTTCTGATAGCA+CGG + chr1_2:48746793-48746812 None:intergenic 45.0%
TCTGTATGTGGTATGGACTC+GGG - chr1_2:48746999-48747018 Msa0074320:intron 45.0%
GACCAGCCTTTGATACACAT+TGG - chr1_2:48747221-48747240 Msa0074320:intron 45.0%
GCAGATTGGTACTCATGTAC+CGG + chr1_2:48747424-48747443 None:intergenic 45.0%
GGTACATGAGTACCAATCTG+CGG - chr1_2:48747423-48747442 Msa0074320:intron 45.0%
CAGAATTTGCAGGACCACTT+GGG + chr1_2:48747450-48747469 None:intergenic 45.0%
ACAGAATTTGCAGGACCACT+TGG + chr1_2:48747451-48747470 None:intergenic 45.0%
AGCATAGGCACAGAATTTGC+AGG + chr1_2:48747460-48747479 None:intergenic 45.0%
TGACTTGAACACGTGTTTCC+CGG - chr1_2:48748104-48748123 Msa0074320:intron 45.0%
GATGATGCATAAATACCGCC+GGG + chr1_2:48748125-48748144 None:intergenic 45.0%
ATGCAATCAAAGCTTAGGCG+AGG - chr1_2:48748227-48748246 Msa0074320:CDS 45.0%
GAGTAACAATCCGGTCGGTT+TGG + chr1_2:48746198-48746217 None:intergenic 50.0%
TTGGGCCTGGAGTAACAATC+CGG + chr1_2:48746207-48746226 None:intergenic 50.0%
! ACGGCTATGGAGTGATAGTG+AGG + chr1_2:48746301-48746320 None:intergenic 50.0%
GAACCAGCTGAAGGATCTGA+AGG - chr1_2:48746488-48746507 Msa0074320:CDS 50.0%
CTGATAGCACGGGTCTTCTT+AGG + chr1_2:48746782-48746801 None:intergenic 50.0%
! AAGGCGTCTTCTGATAGCAC+GGG + chr1_2:48746792-48746811 None:intergenic 50.0%
AAGACGCCTTACCAAACACC+AGG - chr1_2:48746802-48746821 Msa0074320:intron 50.0%
TGTGGCGCAGATAGTTGTCA+TGG - chr1_2:48748024-48748043 Msa0074320:CDS 50.0%
!!! ACCAGCCTTTTGTTTGGTGC+AGG - chr1_2:48748147-48748166 Msa0074320:CDS 50.0%
CGATGCCTGCACCAAACAAA+AGG + chr1_2:48748155-48748174 None:intergenic 50.0%
GACAGAGCGAGAGAAGAAGA+AGG - chr1_2:48748180-48748199 Msa0074320:CDS 50.0%
GAGTAACAATCCGGTCGGTT+TGG + chr1_2:48746198-48746217 None:intergenic 50.0%
TTGGGCCTGGAGTAACAATC+CGG + chr1_2:48746207-48746226 None:intergenic 50.0%
! ACGGCTATGGAGTGATAGTG+AGG + chr1_2:48746301-48746320 None:intergenic 50.0%
GAACCAGCTGAAGGATCTGA+AGG - chr1_2:48746488-48746507 Msa0074320:CDS 50.0%
CTGATAGCACGGGTCTTCTT+AGG + chr1_2:48746782-48746801 None:intergenic 50.0%
! AAGGCGTCTTCTGATAGCAC+GGG + chr1_2:48746792-48746811 None:intergenic 50.0%
AAGACGCCTTACCAAACACC+AGG - chr1_2:48746802-48746821 Msa0074320:intron 50.0%
TGTGGCGCAGATAGTTGTCA+TGG - chr1_2:48748024-48748043 Msa0074320:CDS 50.0%
!!! ACCAGCCTTTTGTTTGGTGC+AGG - chr1_2:48748147-48748166 Msa0074320:CDS 50.0%
CGATGCCTGCACCAAACAAA+AGG + chr1_2:48748155-48748174 None:intergenic 50.0%
GACAGAGCGAGAGAAGAAGA+AGG - chr1_2:48748180-48748199 Msa0074320:CDS 50.0%
!! GTTTTCGAGCCCAAACCGAC+CGG - chr1_2:48746185-48746204 Msa0074320:three_prime_UTR 55.0%
ACCGACCGGATTGTTACTCC+AGG - chr1_2:48746199-48746218 Msa0074320:three_prime_UTR 55.0%
GCCTGGAGTAACAATCCGGT+CGG + chr1_2:48746203-48746222 None:intergenic 55.0%
!! TACTTTGTTCGGGTTGGGCC+TGG + chr1_2:48746220-48746239 None:intergenic 55.0%
CCAGCTGAAGGATCTGAAGG+CGG - chr1_2:48746491-48746510 Msa0074320:CDS 55.0%
CTTCGAGTCGCCAAAGTCAC+CGG - chr1_2:48746525-48746544 Msa0074320:CDS 55.0%
!! GACTTTGGGGTGTGCATCAC+AGG + chr1_2:48747267-48747286 None:intergenic 55.0%
TACCAATCTGCGGACCCAAG+TGG - chr1_2:48747433-48747452 Msa0074320:intron 55.0%
TGGCGCAGACTCTGATGTTG+TGG - chr1_2:48748006-48748025 Msa0074320:CDS 55.0%
CTTGAACACGTGTTTCCCGG+CGG - chr1_2:48748107-48748126 Msa0074320:intron 55.0%
GCCTGCACCAAACAAAAGGC+TGG + chr1_2:48748151-48748170 None:intergenic 55.0%
!! GTTTTCGAGCCCAAACCGAC+CGG - chr1_2:48746185-48746204 Msa0074320:three_prime_UTR 55.0%
ACCGACCGGATTGTTACTCC+AGG - chr1_2:48746199-48746218 Msa0074320:three_prime_UTR 55.0%
GCCTGGAGTAACAATCCGGT+CGG + chr1_2:48746203-48746222 None:intergenic 55.0%
!! TACTTTGTTCGGGTTGGGCC+TGG + chr1_2:48746220-48746239 None:intergenic 55.0%
CCAGCTGAAGGATCTGAAGG+CGG - chr1_2:48746491-48746510 Msa0074320:CDS 55.0%
CTTCGAGTCGCCAAAGTCAC+CGG - chr1_2:48746525-48746544 Msa0074320:CDS 55.0%
!! GACTTTGGGGTGTGCATCAC+AGG + chr1_2:48747267-48747286 None:intergenic 55.0%
TACCAATCTGCGGACCCAAG+TGG - chr1_2:48747433-48747452 Msa0074320:intron 55.0%
TGGCGCAGACTCTGATGTTG+TGG - chr1_2:48748006-48748025 Msa0074320:CDS 55.0%
CTTGAACACGTGTTTCCCGG+CGG - chr1_2:48748107-48748126 Msa0074320:intron 55.0%
GCCTGCACCAAACAAAAGGC+TGG + chr1_2:48748151-48748170 None:intergenic 55.0%
CCGCCTTCAGATCCTTCAGC+TGG + chr1_2:48746494-48746513 None:intergenic 60.0%
!! GAGCTTGTTAGGTGCACCGC+CGG + chr1_2:48746547-48746566 None:intergenic 60.0%
GCAGAAAGCTGCGCTCAGAG+AGG - chr1_2:48746718-48746737 Msa0074320:intron 60.0%
GACCACTTGGGTCCGCAGAT+TGG + chr1_2:48747438-48747457 None:intergenic 60.0%
CCGCCTTCAGATCCTTCAGC+TGG + chr1_2:48746494-48746513 None:intergenic 60.0%
!! GAGCTTGTTAGGTGCACCGC+CGG + chr1_2:48746547-48746566 None:intergenic 60.0%
GCAGAAAGCTGCGCTCAGAG+AGG - chr1_2:48746718-48746737 Msa0074320:intron 60.0%
GACCACTTGGGTCCGCAGAT+TGG + chr1_2:48747438-48747457 None:intergenic 60.0%
CGAGTCGCCAAAGTCACCGG+CGG - chr1_2:48746528-48746547 Msa0074320:CDS 65.0%
AGGTGCACCGCCGGTGACTT+TGG + chr1_2:48746538-48746557 None:intergenic 65.0%
CGAGTCGCCAAAGTCACCGG+CGG - chr1_2:48746528-48746547 Msa0074320:CDS 65.0%
AGGTGCACCGCCGGTGACTT+TGG + chr1_2:48746538-48746557 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48746163 48748555 48746163 ID=Msa0074320;Name=Msa0074320
chr1_2 mRNA 48746163 48748555 48746163 ID=Msa0074320-mRNA-1;Parent=Msa0074320;Name=Msa0074320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0.6|0.8|1|1|5|312|142
chr1_2 exon 48746163 48746549 48746163 ID=Msa0074320-mRNA-1:exon:14904;Parent=Msa0074320-mRNA-1
chr1_2 exon 48747895 48748051 48747895 ID=Msa0074320-mRNA-1:exon:14903;Parent=Msa0074320-mRNA-1
chr1_2 exon 48748144 48748279 48748144 ID=Msa0074320-mRNA-1:exon:14902;Parent=Msa0074320-mRNA-1
chr1_2 exon 48748378 48748433 48748378 ID=Msa0074320-mRNA-1:exon:14901;Parent=Msa0074320-mRNA-1
chr1_2 exon 48748551 48748555 48748551 ID=Msa0074320-mRNA-1:exon:14900;Parent=Msa0074320-mRNA-1
chr1_2 CDS 48748551 48748555 48748551 ID=Msa0074320-mRNA-1:cds;Parent=Msa0074320-mRNA-1
chr1_2 CDS 48748378 48748433 48748378 ID=Msa0074320-mRNA-1:cds;Parent=Msa0074320-mRNA-1
chr1_2 CDS 48748144 48748279 48748144 ID=Msa0074320-mRNA-1:cds;Parent=Msa0074320-mRNA-1
chr1_2 CDS 48747895 48748051 48747895 ID=Msa0074320-mRNA-1:cds;Parent=Msa0074320-mRNA-1
chr1_2 CDS 48746475 48746549 48746475 ID=Msa0074320-mRNA-1:cds;Parent=Msa0074320-mRNA-1
chr1_2 three_prime_UTR 48746163 48746474 48746163 ID=Msa0074320-mRNA-1:three_prime_utr;Parent=Msa0074320-mRNA-1
Gene Sequence

>Msa0074320

ATGGGGGTTTCTTCAGTTCCTCACTATCACTCCATAGCCGTTCCTGAATCAAAAAAAATGGTGAGAATTAAGGTGTTCGAGTTGAGGAACAAACCCAAAGCTGATTTGCTGAACCAGCTGAAGGATCTGAAGGCGGAGCTCGCTTTGCTTCGAGTCGCCAAAGTCACCGGCGGTGCACCTAACAAGCTCTCCAAAATCAAAGTTGTGAGGCTTTCAATTGCACAAGTGTTGACAGTGATTTCACAGAAGCAGAAAGCTGCGCTCAGAGAGGTTTACAAAAATAAGAAGTATTTACCACTTGATCTTCGTCCTAAGAAGACCCGTGCTATCAGAAGACGCCTTACCAAACACCAGGCATCGTTGAAGACAGAGCGAGAGAAGAAGAAGGAGATATACTTTCCACTAAGAAAGTATGCAATCAAAGCTTAG

Protein sequence

>Msa0074320

MGVSSVPHYHSIAVPESKKMVRIKVFELRNKPKADLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEIYFPLRKYAIKA*