AlfalfaGEDB | Msa1081150

M. sativa cultivar zhongmu-4 / Msa1081150

KEGG: K02917
GO: GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071840 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01247.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081150	XP_013441621.1	100.000	112	0	0	1	112	1	112	2.21e-75	228

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081150	sp\|Q9C912\|R35A3_ARATH	91.964	112	9	0	1	112	1	112	6.80e-73	214

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081150	I3T9M0	100.000	112	0	0	1	112	1	112	1.05e-75	228

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1081150	0.849779	2.596741e-60	-8.615850e-47
Msa0002490	Msa1081150	0.852434	4.627972e-61	-8.615850e-47
Msa0002750	Msa1081150	0.825779	3.891255e-54	-8.615850e-47
Msa0002790	Msa1081150	0.807197	5.685379e-50	-8.615850e-47
Msa0003700	Msa1081150	0.812506	4.097586e-51	-8.615850e-47
Msa0003720	Msa1081150	0.841587	4.341508e-58	-8.615850e-47
Msa0003780	Msa1081150	0.877322	6.893867e-69	-8.615850e-47
Msa0004860	Msa1081150	0.822063	2.894183e-53	-8.615850e-47
Msa0004920	Msa1081150	0.811640	6.328812e-51	-8.615850e-47
Msa0004980	Msa1081150	0.826474	2.660027e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081150	MtrunA17_Chr7g0268051	100.000	112	0	1	112	1	112	2.03e-79	228
Msa1081150	MtrunA17_Chr5g0436331	94.643	112	6	1	112	26	137	4.54e-77	223
Msa1081150	MtrunA17_Chr7g0268081	86.667	90	12	18	107	10	99	4.03e-53	161
Msa1081150	MtrunA17_Chr7g0268061	86.667	90	12	18	107	10	99	4.03e-53	161
Msa1081150	MtrunA17_Chr7g0268071	92.771	83	6	17	99	8	90	4.50e-53	161

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081150	AT1G74270.1	91.964	112	9	1	112	1	112	6.92e-74	214
Msa1081150	AT1G07070.1	91.071	112	10	1	112	1	112	7.72e-74	214
Msa1081150	AT3G55750.1	87.387	111	14	2	112	1	111	5.18e-71	207
Msa1081150	AT1G41880.1	86.486	111	15	2	112	1	111	7.87e-71	207
Msa1081150	AT1G41880.2	86.486	111	15	2	112	1	111	7.87e-71	207

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Find 70 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACAACAATCCTTG+AGG	0.584495	7_2:-80907476	None:intergenic
AAACGCCCAAAATCCCGACA+CGG	0.728606	7_2:-80904987	None:intergenic
AAATCTTCCTCCCAAATCAA+TGG	0.516979	7_2:+80906484	Msa1081150:CDS
AACCCATTACCGTTGCATAT+GGG	0.460048	7_2:+80906406	Msa1081150:CDS
AAGATGGTGAAGGGACGTCA+AGG	0.609822	7_2:+80905022	Msa1081150:exon
AAGGCCAAGGTGAAGAAGAA+CGG	0.630167	7_2:+80906383	Msa1081150:CDS
AATAAAACCCTAATCCGTGT+CGG	0.576123	7_2:+80904973	Msa1081150:five_prime_UTR
AATGTTGTCTGCCACAGAAT+TGG	0.471490	7_2:+80907544	Msa1081150:three_prime_UTR
AATTGAAGGAGTGAACACCA+AGG	0.776962	7_2:+80906316	Msa1081150:CDS
ACAAGGCCTCATGGTAACAG+TGG	0.683556	7_2:+80906437	Msa1081150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATTAGCATGCAGTTAATA+AGG	+	chr7_2:80905177-80905196	Msa1081150:intron	30.0%
CATTAGCATGCAGTTAATAA+GGG	+	chr7_2:80905178-80905197	Msa1081150:intron	30.0%
AGTCTCACAAAAACTTATGT+TGG	-	chr7_2:80905349-80905368	None:intergenic	30.0%
TAGTCCAGTTATAAAAACGT+CGG	-	chr7_2:80905740-80905759	None:intergenic	30.0%
AAAATATTGTGGGACGAAAA+TGG	+	chr7_2:80905830-80905849	Msa1081150:intron	30.0%
AAATATTGTGGGACGAAAAT+GGG	+	chr7_2:80905831-80905850	Msa1081150:intron	30.0%
GAAAATGGCATATATCTACA+AGG	+	chr7_2:80906364-80906383	Msa1081150:CDS	30.0%
ACAAAATGCATGAAAAACAC+AGG	-	chr7_2:80906723-80906742	None:intergenic	30.0%
CATATCTGATCTGAAAAATG+TGG	+	chr7_2:80907050-80907069	Msa1081150:intron	30.0%
TGAAAAATGTGGCAATTGTA+TGG	+	chr7_2:80907061-80907080	Msa1081150:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	80904888	80907664	80904888	ID=Msa1081150;Name=Msa1081150
chr7_2	mRNA	80904888	80907664	80904888	ID=Msa1081150-mRNA-1;Parent=Msa1081150;Name=Msa1081150-mRNA-1;_AED=0.31;_eAED=0.31;_QI=137\|1\|1\|1\|0.75\|0.8\|5\|235\|112
chr7_2	exon	80904888	80905056	80904888	ID=Msa1081150-mRNA-1:exon:20605;Parent=Msa1081150-mRNA-1
chr7_2	exon	80906139	80906174	80906139	ID=Msa1081150-mRNA-1:exon:20606;Parent=Msa1081150-mRNA-1
chr7_2	exon	80906277	80906505	80906277	ID=Msa1081150-mRNA-1:exon:20607;Parent=Msa1081150-mRNA-1
chr7_2	exon	80906590	80906632	80906590	ID=Msa1081150-mRNA-1:exon:20608;Parent=Msa1081150-mRNA-1
chr7_2	exon	80907431	80907664	80907431	ID=Msa1081150-mRNA-1:exon:20609;Parent=Msa1081150-mRNA-1
chr7_2	five_prime_UTR	80904888	80905024	80904888	ID=Msa1081150-mRNA-1:five_prime_utr;Parent=Msa1081150-mRNA-1
chr7_2	CDS	80905025	80905056	80905025	ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2	CDS	80906139	80906174	80906139	ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2	CDS	80906277	80906505	80906277	ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2	CDS	80906590	80906631	80906590	ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2	three_prime_UTR	80906632	80906632	80906632	ID=Msa1081150-mRNA-1:three_prime_utr;Parent=Msa1081150-mRNA-1
chr7_2	three_prime_UTR	80907431	80907664	80907431	ID=Msa1081150-mRNA-1:three_prime_utr;Parent=Msa1081150-mRNA-1

Gene Sequence	>Msa1081150 ATGGTGAAGGGACGTCAAGGAGAGCGTGTCAGGCTTTACGTGAGGGGTACAATCCTTGGATACAAAAGATCCAAAGTAAACCAGTACCCAAACACATCTCTGGTCCAAATTGAAGGAGTGAACACCAAGGAAGAGGTAGCTTGGTATGCCGGCAAGAAAATGGCATATATCTACAAGGCCAAGGTGAAGAAGAACGGAACCCATTACCGTTGCATATGGGGCAAGGTTACAAGGCCTCATGGTAACAGTGGTATTGTTCGTGCCAAATTCAAATCAAATCTTCCTCCCAAATCAATGGGATCTCGCGTAAGAGTATTTATGTACCCAAGTAACATATGA
Protein sequence	>Msa1081150 MVKGRQGERVRLYVRGTILGYKRSKVNQYPNTSLVQIEGVNTKEEVAWYAGKKMAYIYKAKVKKNGTHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGSRVRVFMYPSNI*