AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081150 MtrunA17_Chr7g0268051 100.000 112 0 0 1 112 1 112 2.03e-79 228
Msa1081150 MtrunA17_Chr5g0436331 94.643 112 6 0 1 112 26 137 4.54e-77 223
Msa1081150 MtrunA17_Chr7g0268081 86.667 90 12 0 18 107 10 99 4.03e-53 161
Msa1081150 MtrunA17_Chr7g0268061 86.667 90 12 0 18 107 10 99 4.03e-53 161
Msa1081150 MtrunA17_Chr7g0268071 92.771 83 6 0 17 99 8 90 4.50e-53 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081150 AT1G74270.1 91.964 112 9 0 1 112 1 112 6.92e-74 214
Msa1081150 AT1G07070.1 91.071 112 10 0 1 112 1 112 7.72e-74 214
Msa1081150 AT3G55750.1 87.387 111 14 0 2 112 1 111 5.18e-71 207
Msa1081150 AT1G41880.1 86.486 111 15 0 2 112 1 111 7.87e-71 207
Msa1081150 AT1G41880.2 86.486 111 15 0 2 112 1 111 7.87e-71 207

Find 70 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAATCCGTGTCGGGATTT+TGG 0.107146 7_2:+80904981 Msa1081150:five_prime_UTR
TGTCTACAAATTTGAAAGTT+TGG 0.175858 7_2:+80904880 None:intergenic
AGGAAGATTTGATTTGAATT+TGG 0.236788 7_2:-80906471 None:intergenic
TGGTGTTCACTCCTTCAATT+TGG 0.242520 7_2:-80906313 None:intergenic
GTAAATTATTACCATTGATT+TGG 0.266957 7_2:-80906495 None:intergenic
GTCTACAAATTTGAAAGTTT+GGG 0.276616 7_2:+80904881 None:intergenic
CCAAAATCCCGACACGGATT+AGG 0.313817 7_2:-80904981 None:intergenic
TTTCATAAAACAGTAGTTAC+TGG 0.319772 7_2:+80904909 Msa1081150:five_prime_UTR
TAAATTATTACCATTGATTT+GGG 0.343670 7_2:-80906494 None:intergenic
CAAAATCCCGACACGGATTA+GGG 0.352631 7_2:-80904980 None:intergenic
GCCCCATATGCAACGGTAAT+GGG 0.353096 7_2:-80906408 None:intergenic
GAACCCATTACCGTTGCATA+TGG 0.373177 7_2:+80906405 Msa1081150:CDS
GGCTTCTATCATGGACGGTT+TGG 0.378675 7_2:-80904933 None:intergenic
GGTTTACCTCATATGTTACT+TGG 0.390121 7_2:-80906617 None:intergenic
CCAGAGATGTGTTTGGGTAC+TGG 0.398125 7_2:-80906289 None:intergenic
TTGGTATGCCGGCAAGAAAA+TGG 0.403183 7_2:+80906349 Msa1081150:CDS
ATTTGGACCAGAGATGTGTT+TGG 0.405595 7_2:-80906296 None:intergenic
GACGTCAAGGAGAGCGTGTC+AGG 0.412439 7_2:+80905035 Msa1081150:CDS
TTTGGACCAGAGATGTGTTT+GGG 0.422500 7_2:-80906295 None:intergenic
CAACAGTGTGTGTGTGGACT+TGG 0.430087 7_2:+80907588 Msa1081150:three_prime_UTR
GGTTGCAGATTCAGGTGATA+AGG 0.430364 7_2:+80907423 Msa1081150:intron
CTGTTTAGACAGTTCAATGA+TGG 0.441400 7_2:+80907521 Msa1081150:three_prime_UTR
TGCCCCATATGCAACGGTAA+TGG 0.448613 7_2:-80906409 None:intergenic
AACCCATTACCGTTGCATAT+GGG 0.460048 7_2:+80906406 Msa1081150:CDS
ACATCTCTGGTCCAAATTGA+AGG 0.462436 7_2:+80906302 Msa1081150:CDS
TACGTGAGGGGTACAATCCT+TGG 0.470557 7_2:+80906143 Msa1081150:CDS
AATGTTGTCTGCCACAGAAT+TGG 0.471490 7_2:+80907544 Msa1081150:three_prime_UTR
TTCTGGGCTTCTATCATGGA+CGG 0.481290 7_2:-80904938 None:intergenic
GTTTGCTGCTGCTGTGAAGA+TGG 0.484344 7_2:+80905006 Msa1081150:exon
GTACAATCCTTGGATACAAA+AGG 0.498010 7_2:+80906153 Msa1081150:CDS
ATAAAACCCTAATCCGTGTC+GGG 0.505300 7_2:+80904974 Msa1081150:five_prime_UTR
ATACCAAGCTACCTCTTCCT+TGG 0.508204 7_2:-80906333 None:intergenic
GAAGAGGTAGCTTGGTATGC+CGG 0.510952 7_2:+80906338 Msa1081150:CDS
GGTTCCGTTCTTCTTCACCT+TGG 0.512346 7_2:-80906387 None:intergenic
GTTTACCTCATATGTTACTT+GGG 0.516767 7_2:-80906616 None:intergenic
AAATCTTCCTCCCAAATCAA+TGG 0.516979 7_2:+80906484 Msa1081150:CDS
GTTTGGGTACTGGTTTACTT+TGG 0.518411 7_2:-80906279 None:intergenic
GATAAGGTCAGCAGGATTGT+GGG 0.519087 7_2:+80907439 Msa1081150:three_prime_UTR
TGATAAGGTCAGCAGGATTG+TGG 0.520862 7_2:+80907438 Msa1081150:three_prime_UTR
ACCCATTACCGTTGCATATG+GGG 0.524799 7_2:+80906407 Msa1081150:CDS
GCATATGGGGCAAGGTTACA+AGG 0.526923 7_2:+80906420 Msa1081150:CDS
CCAGTACCCAAACACATCTC+TGG 0.530530 7_2:+80906289 Msa1081150:CDS
TTGTATTAGGCTTTACGTGA+GGG 0.535618 7_2:+80906130 Msa1081150:intron
AGGAGTGAACACCAAGGAAG+AGG 0.555068 7_2:+80906322 Msa1081150:CDS
ATTCAGGTGATAAGGTCAGC+AGG 0.555651 7_2:+80907431 Msa1081150:three_prime_UTR
TTCATAAAACAGTAGTTACT+GGG 0.558349 7_2:+80904910 Msa1081150:five_prime_UTR
ATGTACCCAAGTAACATATG+AGG 0.563414 7_2:+80906611 Msa1081150:CDS
ATAGAAGCCCAGAAAACCTC+GGG 0.571838 7_2:+80904947 Msa1081150:five_prime_UTR
GGCATATATCTACAAGGCCA+AGG 0.574061 7_2:+80906370 Msa1081150:CDS
AATAAAACCCTAATCCGTGT+CGG 0.576123 7_2:+80904973 Msa1081150:five_prime_UTR
GGCAAGGTTACAAGGCCTCA+TGG 0.577972 7_2:+80906428 Msa1081150:CDS
AAAAGAAACAACAATCCTTG+AGG 0.584495 7_2:-80907476 None:intergenic
TTTGTATTAGGCTTTACGTG+AGG 0.589429 7_2:+80906129 Msa1081150:intron
TTACCGTTGCATATGGGGCA+AGG 0.593071 7_2:+80906412 Msa1081150:CDS
ACACCAAGGAAGAGGTAGCT+TGG 0.593143 7_2:+80906330 Msa1081150:CDS
TGTATTAGGCTTTACGTGAG+GGG 0.606295 7_2:+80906131 Msa1081150:intron
AAGATGGTGAAGGGACGTCA+AGG 0.609822 7_2:+80905022 Msa1081150:exon
TGCTGCTGTGAAGATGGTGA+AGG 0.610958 7_2:+80905012 Msa1081150:exon
ATTATTACCATTGATTTGGG+AGG 0.614066 7_2:-80906491 None:intergenic
GATAGAAGCCCAGAAAACCT+CGG 0.628390 7_2:+80904946 Msa1081150:five_prime_UTR
TTCATTAACAGCCAATTCTG+TGG 0.629528 7_2:-80907555 None:intergenic
AAGGCCAAGGTGAAGAAGAA+CGG 0.630167 7_2:+80906383 Msa1081150:CDS
GAAAATGGCATATATCTACA+AGG 0.630318 7_2:+80906364 Msa1081150:CDS
TATATTCAACAGTGTGTGTG+TGG 0.632137 7_2:+80907582 Msa1081150:three_prime_UTR
GCTGCTGTGAAGATGGTGAA+GGG 0.632435 7_2:+80905013 Msa1081150:exon
TAACCTTGCCCCATATGCAA+CGG 0.648972 7_2:-80906415 None:intergenic
ACAAGGCCTCATGGTAACAG+TGG 0.683556 7_2:+80906437 Msa1081150:CDS
AAACGCCCAAAATCCCGACA+CGG 0.728606 7_2:-80904987 None:intergenic
ACAATACCACTGTTACCATG+AGG 0.737809 7_2:-80906443 None:intergenic
AATTGAAGGAGTGAACACCA+AGG 0.776962 7_2:+80906316 Msa1081150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGCAATTTTATAAAT+AGG + chr7_2:80907328-80907347 Msa1081150:intron 10.0%
!!! ATTTTGCAATTTTATAAATA+GGG + chr7_2:80907329-80907348 Msa1081150:intron 10.0%
!!! TATCATTGTTTTAATTCATT+TGG + chr7_2:80905130-80905149 Msa1081150:intron 15.0%
!!! TTTATTTTTAGTTTATAGAC+TGG + chr7_2:80905212-80905231 Msa1081150:intron 15.0%
!! TATAGAAAAGGAAAAAATAA+AGG - chr7_2:80905551-80905570 None:intergenic 15.0%
!!! TAAAGCTATTTTTATAGAAA+AGG - chr7_2:80905563-80905582 None:intergenic 15.0%
!!! TTTTGGTTTTATTTTTGTTA+GGG + chr7_2:80905792-80905811 Msa1081150:intron 15.0%
!!! GTATATCTATCTTATTTTTA+AGG + chr7_2:80906052-80906071 Msa1081150:intron 15.0%
!!! TATCTGTTTTATTTTATGTT+TGG + chr7_2:80906192-80906211 Msa1081150:intron 15.0%
!!! TAAATTATTACCATTGATTT+GGG - chr7_2:80906497-80906516 None:intergenic 15.0%
!!! AATTTTGCAATTTTTTAAAG+AGG + chr7_2:80907216-80907235 Msa1081150:intron 15.0%
!!! ATTTTGCAATTTTTTAAAGA+GGG + chr7_2:80907217-80907236 Msa1081150:intron 15.0%
!!! AACTACTGTTTTATGAAATT+TGG - chr7_2:80904907-80904926 None:intergenic 20.0%
!! GATGAAAATACAGATAAAAA+TGG - chr7_2:80905076-80905095 None:intergenic 20.0%
!! AATATAGCTGCTAAAAAATT+GGG - chr7_2:80905683-80905702 None:intergenic 20.0%
!! AAATATAGCTGCTAAAAAAT+TGG - chr7_2:80905684-80905703 None:intergenic 20.0%
!!! CTTTTGGTTTTATTTTTGTT+AGG + chr7_2:80905791-80905810 Msa1081150:intron 20.0%
!!! ATTTTTGTTAGGGATTAAAT+TGG + chr7_2:80905802-80905821 Msa1081150:intron 20.0%
!!! TTTTTGTTAGGGATTAAATT+GGG + chr7_2:80905803-80905822 Msa1081150:intron 20.0%
!! AAAAGACACAAAAACATATT+TGG - chr7_2:80905905-80905924 None:intergenic 20.0%
!! AAAAAATAAGATAGATACAC+AGG - chr7_2:80905941-80905960 None:intergenic 20.0%
!! AAAAGACACAAAAACATATT+TGG - chr7_2:80905905-80905924 None:intergenic 20.0%
!! TTTCTTGTTCAATTTGTATT+AGG + chr7_2:80906117-80906136 Msa1081150:intron 20.0%
!!! GTAAATTATTACCATTGATT+TGG - chr7_2:80906498-80906517 None:intergenic 20.0%
!!! TAATAAGAATAAAAGTGTGT+TGG - chr7_2:80906520-80906539 None:intergenic 20.0%
!! TTCATATTTGTAAAACTTGA+AGG - chr7_2:80906791-80906810 None:intergenic 20.0%
!! TAGAAACATAGTTTATTGTT+TGG + chr7_2:80907089-80907108 Msa1081150:intron 20.0%
! TTTCATAAAACAGTAGTTAC+TGG + chr7_2:80904909-80904928 Msa1081150:five_prime_UTR 25.0%
! TTCATAAAACAGTAGTTACT+GGG + chr7_2:80904910-80904929 Msa1081150:five_prime_UTR 25.0%
! AAAGAAAAGAAAAGAGAAGT+AGG - chr7_2:80905453-80905472 None:intergenic 25.0%
!!! GTTCAATTTTCATTTTTGTC+AGG - chr7_2:80905710-80905729 None:intergenic 25.0%
! ACAAAAATGAAAATTGAACC+TGG + chr7_2:80905711-80905730 Msa1081150:intron 25.0%
!!! AGGAAGATTTGATTTGAATT+TGG - chr7_2:80906474-80906493 None:intergenic 25.0%
!!! CTATATATGGTTCTAAATCA+TGG + chr7_2:80907014-80907033 Msa1081150:intron 25.0%
! TTAACTACGTTGTTTATTCT+AGG - chr7_2:80907145-80907164 None:intergenic 25.0%
! TTACTGTTACATTGGATATT+TGG + chr7_2:80907402-80907421 Msa1081150:intron 25.0%
ACATTAGCATGCAGTTAATA+AGG + chr7_2:80905177-80905196 Msa1081150:intron 30.0%
CATTAGCATGCAGTTAATAA+GGG + chr7_2:80905178-80905197 Msa1081150:intron 30.0%
AGTCTCACAAAAACTTATGT+TGG - chr7_2:80905349-80905368 None:intergenic 30.0%
! TAAGTTTTTGTGAGACTGTT+TGG + chr7_2:80905352-80905371 Msa1081150:intron 30.0%
!!! ATGCTATGAGCTGTTTTTAT+AGG - chr7_2:80905512-80905531 None:intergenic 30.0%
! ATCACTCCACAAAGTATTAA+GGG - chr7_2:80905644-80905663 None:intergenic 30.0%
TAGTCCAGTTATAAAAACGT+CGG - chr7_2:80905740-80905759 None:intergenic 30.0%
AAAATATTGTGGGACGAAAA+TGG + chr7_2:80905830-80905849 Msa1081150:intron 30.0%
AAATATTGTGGGACGAAAAT+GGG + chr7_2:80905831-80905850 Msa1081150:intron 30.0%
! AAGTTTACCTTTTGTATCCA+AGG - chr7_2:80906163-80906182 None:intergenic 30.0%
! GTTTGGTTTATGAAAATGTC+TGG + chr7_2:80906209-80906228 Msa1081150:intron 30.0%
GAAAATGGCATATATCTACA+AGG + chr7_2:80906364-80906383 Msa1081150:CDS 30.0%
!! ATTATTACCATTGATTTGGG+AGG - chr7_2:80906494-80906513 None:intergenic 30.0%
!!! TTATCTTGACTTTTTGAGTG+TGG + chr7_2:80906556-80906575 Msa1081150:intron 30.0%
! GTTTACCTCATATGTTACTT+GGG - chr7_2:80906619-80906638 None:intergenic 30.0%
!! AAACAATTCAAAAAGCATCC+AGG - chr7_2:80906648-80906667 None:intergenic 30.0%
ACAAAATGCATGAAAAACAC+AGG - chr7_2:80906723-80906742 None:intergenic 30.0%
!! TCATGCATTTTGTCATTTGA+TGG + chr7_2:80906730-80906749 Msa1081150:intron 30.0%
!! CATGCATTTTGTCATTTGAT+GGG + chr7_2:80906731-80906750 Msa1081150:intron 30.0%
!! ATGCATTTTGTCATTTGATG+GGG + chr7_2:80906732-80906751 Msa1081150:intron 30.0%
CATATCTGATCTGAAAAATG+TGG + chr7_2:80907050-80907069 Msa1081150:intron 30.0%
TGAAAAATGTGGCAATTGTA+TGG + chr7_2:80907061-80907080 Msa1081150:intron 30.0%
! TTGTTTGGAATTCTATCAGA+AGG + chr7_2:80907104-80907123 Msa1081150:intron 30.0%
ACTCTATCTTACTGTTACAT+TGG + chr7_2:80907394-80907413 Msa1081150:intron 30.0%
!!! GATGATTTTTAGTAACCTCA+AGG + chr7_2:80907461-80907480 Msa1081150:three_prime_UTR 30.0%
AAAAGAAACAACAATCCTTG+AGG - chr7_2:80907479-80907498 None:intergenic 30.0%
! TATTATACCCGAGGTTTTCT+GGG - chr7_2:80904957-80904976 None:intergenic 35.0%
! TTATTATACCCGAGGTTTTC+TGG - chr7_2:80904958-80904977 None:intergenic 35.0%
!!! TTAGGGTTTTATTATACCCG+AGG - chr7_2:80904966-80904985 None:intergenic 35.0%
AATAAAACCCTAATCCGTGT+CGG + chr7_2:80904973-80904992 Msa1081150:five_prime_UTR 35.0%
ACTGCATGCTAATGTTTGAA+TGG - chr7_2:80905172-80905191 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr7_2:80905317-80905336 None:intergenic 35.0%
CTCACAAAAACTTATGTTGG+TGG - chr7_2:80905346-80905365 None:intergenic 35.0%
AGAACTTGTGAAAATCAGCT+GGG - chr7_2:80905421-80905440 None:intergenic 35.0%
! CAAAGTATTAAGGGCATGTT+TGG - chr7_2:80905635-80905654 None:intergenic 35.0%
AACATGCCCTTAATACTTTG+TGG + chr7_2:80905635-80905654 Msa1081150:intron 35.0%
! CATCACTCCACAAAGTATTA+AGG - chr7_2:80905645-80905664 None:intergenic 35.0%
CTTAATACTTTGTGGAGTGA+TGG + chr7_2:80905643-80905662 Msa1081150:intron 35.0%
ATAGCTGCTAAAAAATTGGG+AGG - chr7_2:80905680-80905699 None:intergenic 35.0%
AGTCCAGTTATAAAAACGTC+GGG - chr7_2:80905739-80905758 None:intergenic 35.0%
AATTGGGTCGCAAAATATTG+TGG + chr7_2:80905819-80905838 Msa1081150:intron 35.0%
ATTGGGTCGCAAAATATTGT+GGG + chr7_2:80905820-80905839 Msa1081150:intron 35.0%
TTTGTATTAGGCTTTACGTG+AGG + chr7_2:80906129-80906148 Msa1081150:intron 35.0%
TTGTATTAGGCTTTACGTGA+GGG + chr7_2:80906130-80906149 Msa1081150:intron 35.0%
GTACAATCCTTGGATACAAA+AGG + chr7_2:80906153-80906172 Msa1081150:CDS 35.0%
AAATGTCTGGTTAGATGCTT+TGG + chr7_2:80906222-80906241 Msa1081150:intron 35.0%
!!! GATATATGCCATTTTCTTGC+CGG - chr7_2:80906360-80906379 None:intergenic 35.0%
AAATCTTCCTCCCAAATCAA+TGG + chr7_2:80906484-80906503 Msa1081150:CDS 35.0%
ATGTACCCAAGTAACATATG+AGG + chr7_2:80906611-80906630 Msa1081150:CDS 35.0%
GGTTTACCTCATATGTTACT+TGG - chr7_2:80906620-80906639 None:intergenic 35.0%
TCTTATACCTCAGAGTTATG+TGG + chr7_2:80906957-80906976 Msa1081150:intron 35.0%
GCTATCAGGAGAACTATATA+TGG + chr7_2:80907001-80907020 Msa1081150:intron 35.0%
TATAAATAGGGCTTCTTCTC+TGG + chr7_2:80907341-80907360 Msa1081150:intron 35.0%
CTGTTTAGACAGTTCAATGA+TGG + chr7_2:80907521-80907540 Msa1081150:three_prime_UTR 35.0%
TTCATTAACAGCCAATTCTG+TGG - chr7_2:80907558-80907577 None:intergenic 35.0%
TATATTCAACAGTGTGTGTG+TGG + chr7_2:80907582-80907601 Msa1081150:three_prime_UTR 35.0%
ATAAAACCCTAATCCGTGTC+GGG + chr7_2:80904974-80904993 Msa1081150:five_prime_UTR 40.0%
ACTGATGTCTAATGCCTGTT+TGG + chr7_2:80905300-80905319 Msa1081150:intron 40.0%
TGTCTAATGCCTGTTTGGAT+TGG + chr7_2:80905305-80905324 Msa1081150:intron 40.0%
GAACTTGTGAAAACAGCTCA+TGG + chr7_2:80905376-80905395 Msa1081150:intron 40.0%
GAGAACTTGTGAAAATCAGC+TGG - chr7_2:80905422-80905441 None:intergenic 40.0%
AAAATTGGGAGGACCAACAT+AGG - chr7_2:80905669-80905688 None:intergenic 40.0%
GTCCAGTTATAAAAACGTCG+GGG - chr7_2:80905738-80905757 None:intergenic 40.0%
TCGCTAGTATGAAGATCTCT+GGG + chr7_2:80905765-80905784 Msa1081150:intron 40.0%
TGTATTAGGCTTTACGTGAG+GGG + chr7_2:80906131-80906150 Msa1081150:intron 40.0%
!! GTTTGGGTACTGGTTTACTT+TGG - chr7_2:80906282-80906301 None:intergenic 40.0%
TTTGGACCAGAGATGTGTTT+GGG - chr7_2:80906298-80906317 None:intergenic 40.0%
ATTTGGACCAGAGATGTGTT+TGG - chr7_2:80906299-80906318 None:intergenic 40.0%
ACATCTCTGGTCCAAATTGA+AGG + chr7_2:80906302-80906321 Msa1081150:CDS 40.0%
TGGTGTTCACTCCTTCAATT+TGG - chr7_2:80906316-80906335 None:intergenic 40.0%
AATTGAAGGAGTGAACACCA+AGG + chr7_2:80906316-80906335 Msa1081150:CDS 40.0%
AACCCATTACCGTTGCATAT+GGG + chr7_2:80906406-80906425 Msa1081150:CDS 40.0%
ACAATACCACTGTTACCATG+AGG - chr7_2:80906446-80906465 None:intergenic 40.0%
!! TCAAAAAGCATCCAGGACAT+GGG - chr7_2:80906641-80906660 None:intergenic 40.0%
!! TTCAAAAAGCATCCAGGACA+TGG - chr7_2:80906642-80906661 None:intergenic 40.0%
TGTAGACAGACATCAGTTCT+TGG + chr7_2:80906890-80906909 Msa1081150:intron 40.0%
! CTGCACTTTGTCTTATTACG+AGG + chr7_2:80906933-80906952 Msa1081150:intron 40.0%
ACAAAGACCACATAACTCTG+AGG - chr7_2:80906967-80906986 None:intergenic 40.0%
GAGTTATGTGGTCTTTGTAC+TGG + chr7_2:80906969-80906988 Msa1081150:intron 40.0%
GGATATTTGGTTGCAGATTC+AGG + chr7_2:80907415-80907434 Msa1081150:intron 40.0%
AATGTTGTCTGCCACAGAAT+TGG + chr7_2:80907544-80907563 Msa1081150:three_prime_UTR 40.0%
TTCTGGGCTTCTATCATGGA+CGG - chr7_2:80904941-80904960 None:intergenic 45.0%
! GGTTTTCTGGGCTTCTATCA+TGG - chr7_2:80904945-80904964 None:intergenic 45.0%
GATAGAAGCCCAGAAAACCT+CGG + chr7_2:80904946-80904965 Msa1081150:five_prime_UTR 45.0%
ATAGAAGCCCAGAAAACCTC+GGG + chr7_2:80904947-80904966 Msa1081150:five_prime_UTR 45.0%
! CAAAATCCCGACACGGATTA+GGG - chr7_2:80904983-80905002 None:intergenic 45.0%
! CTAATCCGTGTCGGGATTTT+GGG + chr7_2:80904982-80905001 Msa1081150:five_prime_UTR 45.0%
TTATAAAAACGTCGGGGACC+AGG - chr7_2:80905732-80905751 None:intergenic 45.0%
! GTCCCCGACGTTTTTATAAC+TGG + chr7_2:80905733-80905752 Msa1081150:intron 45.0%
GTCGCTAGTATGAAGATCTC+TGG + chr7_2:80905764-80905783 Msa1081150:intron 45.0%
!! GAAGATCTCTGGGCTACTTT+TGG + chr7_2:80905775-80905794 Msa1081150:intron 45.0%
ATACCAAGCTACCTCTTCCT+TGG - chr7_2:80906336-80906355 None:intergenic 45.0%
TTGGTATGCCGGCAAGAAAA+TGG + chr7_2:80906349-80906368 Msa1081150:CDS 45.0%
GGCATATATCTACAAGGCCA+AGG + chr7_2:80906370-80906389 Msa1081150:CDS 45.0%
AAGGCCAAGGTGAAGAAGAA+CGG + chr7_2:80906383-80906402 Msa1081150:CDS 45.0%
GAACCCATTACCGTTGCATA+TGG + chr7_2:80906405-80906424 Msa1081150:CDS 45.0%
ACCCATTACCGTTGCATATG+GGG + chr7_2:80906407-80906426 Msa1081150:CDS 45.0%
TAACCTTGCCCCATATGCAA+CGG - chr7_2:80906418-80906437 None:intergenic 45.0%
TTTGAGTGTGGATGCATTGC+AGG + chr7_2:80906568-80906587 Msa1081150:intron 45.0%
TTGAGTGTGGATGCATTGCA+GGG + chr7_2:80906569-80906588 Msa1081150:intron 45.0%
TATGAGGTAAACCCATGTCC+TGG + chr7_2:80906627-80906646 Msa1081150:intron 45.0%
GGTTGCAGATTCAGGTGATA+AGG + chr7_2:80907423-80907442 Msa1081150:intron 45.0%
ATTCAGGTGATAAGGTCAGC+AGG + chr7_2:80907431-80907450 Msa1081150:three_prime_UTR 45.0%
TGATAAGGTCAGCAGGATTG+TGG + chr7_2:80907438-80907457 Msa1081150:three_prime_UTR 45.0%
GATAAGGTCAGCAGGATTGT+GGG + chr7_2:80907439-80907458 Msa1081150:three_prime_UTR 45.0%
GGCTTCTATCATGGACGGTT+TGG - chr7_2:80904936-80904955 None:intergenic 50.0%
CCAAAATCCCGACACGGATT+AGG - chr7_2:80904984-80905003 None:intergenic 50.0%
! CCTAATCCGTGTCGGGATTT+TGG + chr7_2:80904981-80905000 Msa1081150:five_prime_UTR 50.0%
AAACGCCCAAAATCCCGACA+CGG - chr7_2:80904990-80905009 None:intergenic 50.0%
! GTTTGCTGCTGCTGTGAAGA+TGG + chr7_2:80905006-80905025 Msa1081150:exon 50.0%
TGCTGCTGTGAAGATGGTGA+AGG + chr7_2:80905012-80905031 Msa1081150:exon 50.0%
GCTGCTGTGAAGATGGTGAA+GGG + chr7_2:80905013-80905032 Msa1081150:exon 50.0%
AAGATGGTGAAGGGACGTCA+AGG + chr7_2:80905022-80905041 Msa1081150:exon 50.0%
TGTGGAGTGATGGCCTATGT+TGG + chr7_2:80905653-80905672 Msa1081150:intron 50.0%
! TACGTGAGGGGTACAATCCT+TGG + chr7_2:80906143-80906162 Msa1081150:CDS 50.0%
CCAGAGATGTGTTTGGGTAC+TGG - chr7_2:80906292-80906311 None:intergenic 50.0%
CCAGTACCCAAACACATCTC+TGG + chr7_2:80906289-80906308 Msa1081150:CDS 50.0%
AGGAGTGAACACCAAGGAAG+AGG + chr7_2:80906322-80906341 Msa1081150:CDS 50.0%
ACACCAAGGAAGAGGTAGCT+TGG + chr7_2:80906330-80906349 Msa1081150:CDS 50.0%
GAAGAGGTAGCTTGGTATGC+CGG + chr7_2:80906338-80906357 Msa1081150:CDS 50.0%
GGTTCCGTTCTTCTTCACCT+TGG - chr7_2:80906390-80906409 None:intergenic 50.0%
GCCCCATATGCAACGGTAAT+GGG - chr7_2:80906411-80906430 None:intergenic 50.0%
TGCCCCATATGCAACGGTAA+TGG - chr7_2:80906412-80906431 None:intergenic 50.0%
TTACCGTTGCATATGGGGCA+AGG + chr7_2:80906412-80906431 Msa1081150:CDS 50.0%
GCATATGGGGCAAGGTTACA+AGG + chr7_2:80906420-80906439 Msa1081150:CDS 50.0%
ACAAGGCCTCATGGTAACAG+TGG + chr7_2:80906437-80906456 Msa1081150:CDS 50.0%
ACTGGCACATGCTAGCTATC+AGG + chr7_2:80906987-80907006 Msa1081150:intron 50.0%
TTTAAAGAGGGCCTCTTCGC+TGG + chr7_2:80907229-80907248 Msa1081150:intron 50.0%
CTACAGATAGACCAGCGAAG+AGG - chr7_2:80907243-80907262 None:intergenic 50.0%
CAACAGTGTGTGTGTGGACT+TGG + chr7_2:80907588-80907607 Msa1081150:three_prime_UTR 50.0%
GGCAAGGTTACAAGGCCTCA+TGG + chr7_2:80906428-80906447 Msa1081150:CDS 55.0%
! GACGTCAAGGAGAGCGTGTC+AGG + chr7_2:80905035-80905054 Msa1081150:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80904888 80907664 80904888 ID=Msa1081150;Name=Msa1081150
chr7_2 mRNA 80904888 80907664 80904888 ID=Msa1081150-mRNA-1;Parent=Msa1081150;Name=Msa1081150-mRNA-1;_AED=0.31;_eAED=0.31;_QI=137|1|1|1|0.75|0.8|5|235|112
chr7_2 exon 80904888 80905056 80904888 ID=Msa1081150-mRNA-1:exon:20605;Parent=Msa1081150-mRNA-1
chr7_2 exon 80906139 80906174 80906139 ID=Msa1081150-mRNA-1:exon:20606;Parent=Msa1081150-mRNA-1
chr7_2 exon 80906277 80906505 80906277 ID=Msa1081150-mRNA-1:exon:20607;Parent=Msa1081150-mRNA-1
chr7_2 exon 80906590 80906632 80906590 ID=Msa1081150-mRNA-1:exon:20608;Parent=Msa1081150-mRNA-1
chr7_2 exon 80907431 80907664 80907431 ID=Msa1081150-mRNA-1:exon:20609;Parent=Msa1081150-mRNA-1
chr7_2 five_prime_UTR 80904888 80905024 80904888 ID=Msa1081150-mRNA-1:five_prime_utr;Parent=Msa1081150-mRNA-1
chr7_2 CDS 80905025 80905056 80905025 ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2 CDS 80906139 80906174 80906139 ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2 CDS 80906277 80906505 80906277 ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2 CDS 80906590 80906631 80906590 ID=Msa1081150-mRNA-1:cds;Parent=Msa1081150-mRNA-1
chr7_2 three_prime_UTR 80906632 80906632 80906632 ID=Msa1081150-mRNA-1:three_prime_utr;Parent=Msa1081150-mRNA-1
chr7_2 three_prime_UTR 80907431 80907664 80907431 ID=Msa1081150-mRNA-1:three_prime_utr;Parent=Msa1081150-mRNA-1
Gene Sequence

>Msa1081150

ATGGTGAAGGGACGTCAAGGAGAGCGTGTCAGGCTTTACGTGAGGGGTACAATCCTTGGATACAAAAGATCCAAAGTAAACCAGTACCCAAACACATCTCTGGTCCAAATTGAAGGAGTGAACACCAAGGAAGAGGTAGCTTGGTATGCCGGCAAGAAAATGGCATATATCTACAAGGCCAAGGTGAAGAAGAACGGAACCCATTACCGTTGCATATGGGGCAAGGTTACAAGGCCTCATGGTAACAGTGGTATTGTTCGTGCCAAATTCAAATCAAATCTTCCTCCCAAATCAATGGGATCTCGCGTAAGAGTATTTATGTACCCAAGTAACATATGA

Protein sequence

>Msa1081150

MVKGRQGERVRLYVRGTILGYKRSKVNQYPNTSLVQIEGVNTKEEVAWYAGKKMAYIYKAKVKKNGTHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGSRVRVFMYPSNI*