AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0187690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187690 MtrunA17_Chr1g0182051 96.667 120 4 0 4 123 3 122 2.78e-77 224
Msa0187690 MtrunA17_Chr4g0030641 89.431 123 13 0 1 123 1 123 2.06e-73 214
Msa0187690 MtrunA17_Chr1g0212921 91.667 120 10 0 4 123 2 121 5.06e-73 213
Msa0187690 MtrunA17_Chr4g0036351 87.395 119 15 0 5 123 3 121 1.16e-67 199
Msa0187690 MtrunA17_Chr7g0249361 85.366 123 18 0 1 123 46 168 1.52e-67 201
Msa0187690 MtrunA17_Chr1g0206641 88.889 36 4 0 14 49 5 40 4.97e-14 61.6
Msa0187690 MtrunA17_Chr5g0419591 87.879 33 4 0 67 99 2 34 2.72e-13 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0187690 AT5G02610.1 88.525 122 14 0 1 122 1 122 5.75e-71 208
Msa0187690 AT2G39390.1 88.525 122 14 0 1 122 1 122 1.20e-70 207
Msa0187690 AT3G09500.1 88.525 122 14 0 1 122 1 122 1.32e-70 207
Msa0187690 AT3G55170.5 86.066 122 17 0 1 122 1 122 1.11e-68 202
Msa0187690 AT3G55170.2 86.066 122 17 0 1 122 1 122 1.11e-68 202
Msa0187690 AT3G55170.1 86.066 122 17 0 1 122 1 122 1.11e-68 202
Msa0187690 AT5G02610.2 74.483 145 14 1 1 122 1 145 3.72e-65 194
Msa0187690 AT3G55170.4 85.859 99 14 0 1 99 1 99 6.81e-53 162
Msa0187690 AT3G55170.3 85.859 99 14 0 1 99 1 99 6.81e-53 162

Find 34 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATACAAGTTAATGAATTA+TGG 0.205495 2_1:+2401418 Msa0187690:three_prime_UTR
AGTTCAATATTTCAAATAAC+TGG 0.271293 2_1:-2401167 None:intergenic
TGCATTTGAAGTGAGAATTA+AGG 0.291537 2_1:+2399328 Msa0187690:intron
CCATAATTCATTAACTTGTA+TGG 0.299454 2_1:-2401418 None:intergenic
CTGATAGCACGGGTCTTCTT+AGG 0.307833 2_1:-2399677 None:intergenic
CTGGTTCAGCAAATCAGCTT+TGG 0.322482 2_1:-2399372 None:intergenic
TTGATTGCATACTTTCTTAG+TGG 0.358328 2_1:-2401111 None:intergenic
GCTTACTTAATTTGTTTGTC+TGG 0.376358 2_1:+2401194 Msa0187690:three_prime_UTR
TGGTTCAGCAAATCAGCTTT+GGG 0.386643 2_1:-2399371 None:intergenic
ATAACACATCGTCGTTAAAA+TGG 0.393667 2_1:+2399141 None:intergenic
AGGTGCACCGCCGGTGACTT+TGG 0.448506 2_1:-2399435 None:intergenic
AAAGTATGCAATCAAAGCTT+AGG 0.473169 2_1:+2401119 Msa0187690:CDS
CATAATTCATTAACTTGTAT+GGG 0.474657 2_1:-2401417 None:intergenic
ATTAAACCTGGTGTTTGGTA+AGG 0.478429 2_1:-2399706 None:intergenic
CCGCCTTCAGATCCTTCAGC+TGG 0.492136 2_1:-2399391 None:intergenic
CTTCGAGTCGCCAAAGTCAC+CGG 0.499663 2_1:+2399425 Msa0187690:CDS
AGTGTTTAAGTAGTCTTGAA+AGG 0.499675 2_1:-2401385 None:intergenic
GAGCTTGTTAGGTGCACCGC+CGG 0.541755 2_1:-2399444 None:intergenic
GAATTAAGGTGTTCGAGTTG+AGG 0.547821 2_1:+2399342 Msa0187690:CDS
AATTCATTAACTTGTATGGG+AGG 0.562957 2_1:-2401414 None:intergenic
TGATTTGCTGAACCAGCTGA+AGG 0.570604 2_1:+2399379 Msa0187690:CDS
GACAGAGCGAGAGAAGAAGA+AGG 0.577238 2_1:+2401077 Msa0187690:CDS
ATCTATCTTGAGACTTCCGA+AGG 0.580195 2_1:+2401290 Msa0187690:three_prime_UTR
GAACCAGCTGAAGGATCTGA+AGG 0.580944 2_1:+2399388 Msa0187690:CDS
TAAGGCGTCTTCTGATAGCA+CGG 0.582904 2_1:-2399688 None:intergenic
TTCTTAGGACGAAGATCAAG+TGG 0.602701 2_1:-2399662 None:intergenic
ACCCTACAGTTAAAATCGCA+AGG 0.605131 2_1:-2399165 None:intergenic
AAGGCGTCTTCTGATAGCAC+GGG 0.605672 2_1:-2399687 None:intergenic
AAGACGCCTTACCAAACACC+AGG 0.624051 2_1:+2399700 Msa0187690:CDS
ATGCAATCAAAGCTTAGGCG+AGG 0.662311 2_1:+2401124 Msa0187690:exon
ACGGCTATGGAGTGATAGTG+AGG 0.672283 2_1:-2399198 None:intergenic
CGAGTCGCCAAAGTCACCGG+CGG 0.675842 2_1:+2399428 Msa0187690:CDS
CCAGCTGAAGGATCTGAAGG+CGG 0.695519 2_1:+2399391 Msa0187690:CDS
GCAGAAAGCTGCGCTCAGAG+AGG 0.696591 2_1:+2399616 Msa0187690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATGTATTGTTTACATTT+TGG - chr2_1:2399471-2399490 None:intergenic 15.0%
!! TTAAGTAAAAAAATTAAACC+TGG - chr2_1:2399721-2399740 None:intergenic 15.0%
!!! TTTTACTTAATTTGTTTGTT+TGG + chr2_1:2399731-2399750 Msa0187690:intron 15.0%
!! TGATTAGATAGTTATTATAA+TGG + chr2_1:2399809-2399828 Msa0187690:intron 15.0%
!! TATGTAATTCTTATAGAATT+TGG + chr2_1:2399927-2399946 Msa0187690:intron 15.0%
!!! TGTTTATCTATAAATTTTAC+TGG + chr2_1:2400201-2400220 Msa0187690:intron 15.0%
!!! ATTTTGAATGAACAAATATA+TGG - chr2_1:2400228-2400247 None:intergenic 15.0%
!! ATATATTTGTTCATTCAAAA+TGG + chr2_1:2400227-2400246 Msa0187690:intron 15.0%
!!! TTTTAAACAAAAACATGAAA+TGG - chr2_1:2400695-2400714 None:intergenic 15.0%
!!! ATAATTTTAACATAAACCTT+CGG - chr2_1:2401309-2401328 None:intergenic 15.0%
!!! ATTATGTATTGTTTACATTT+TGG - chr2_1:2399471-2399490 None:intergenic 15.0%
!! TTAAGTAAAAAAATTAAACC+TGG - chr2_1:2399721-2399740 None:intergenic 15.0%
!!! TTTTACTTAATTTGTTTGTT+TGG + chr2_1:2399731-2399750 Msa0187690:intron 15.0%
!! TGATTAGATAGTTATTATAA+TGG + chr2_1:2399809-2399828 Msa0187690:intron 15.0%
!! TATGTAATTCTTATAGAATT+TGG + chr2_1:2399927-2399946 Msa0187690:intron 15.0%
!!! TGTTTATCTATAAATTTTAC+TGG + chr2_1:2400201-2400220 Msa0187690:intron 15.0%
!!! ATTTTGAATGAACAAATATA+TGG - chr2_1:2400228-2400247 None:intergenic 15.0%
!! ATATATTTGTTCATTCAAAA+TGG + chr2_1:2400227-2400246 Msa0187690:intron 15.0%
!!! TTTTAAACAAAAACATGAAA+TGG - chr2_1:2400695-2400714 None:intergenic 15.0%
!!! ATAATTTTAACATAAACCTT+CGG - chr2_1:2401309-2401328 None:intergenic 15.0%
!!! AATACATAATCGCTTTTATA+TGG + chr2_1:2399481-2399500 Msa0187690:intron 20.0%
!! AAAATTGTAATCAAATACGT+TGG + chr2_1:2400486-2400505 Msa0187690:intron 20.0%
!! AAAACTCACAAACAAAATAT+AGG - chr2_1:2400570-2400589 None:intergenic 20.0%
!!! ACTAAGGTTTTCAAATAAAA+AGG - chr2_1:2400948-2400967 None:intergenic 20.0%
!! AGTTCAATATTTCAAATAAC+TGG - chr2_1:2401170-2401189 None:intergenic 20.0%
!! AAATGTAACTAGACAAAAAT+TGG - chr2_1:2401238-2401257 None:intergenic 20.0%
!!! CATAATTCATTAACTTGTAT+GGG - chr2_1:2401420-2401439 None:intergenic 20.0%
!!! AATACATAATCGCTTTTATA+TGG + chr2_1:2399481-2399500 Msa0187690:intron 20.0%
!! AAAATTGTAATCAAATACGT+TGG + chr2_1:2400486-2400505 Msa0187690:intron 20.0%
!! AAAACTCACAAACAAAATAT+AGG - chr2_1:2400570-2400589 None:intergenic 20.0%
!!! ACTAAGGTTTTCAAATAAAA+AGG - chr2_1:2400948-2400967 None:intergenic 20.0%
!! AGTTCAATATTTCAAATAAC+TGG - chr2_1:2401170-2401189 None:intergenic 20.0%
!! AAATGTAACTAGACAAAAAT+TGG - chr2_1:2401238-2401257 None:intergenic 20.0%
!!! CATAATTCATTAACTTGTAT+GGG - chr2_1:2401420-2401439 None:intergenic 20.0%
!!! CATTTTTTTTGATTCAGGAA+CGG - chr2_1:2399220-2399239 None:intergenic 25.0%
! GTTCCTGAATCAAAAAAAAT+GGG + chr2_1:2399219-2399238 Msa0187690:exon 25.0%
!!! TTACCCATTTTTTTTGATTC+AGG - chr2_1:2399225-2399244 None:intergenic 25.0%
! AAAAAATTAAACCTGGTGTT+TGG - chr2_1:2399714-2399733 None:intergenic 25.0%
! ATAATTTAGCTAACATTGAG+AGG + chr2_1:2400068-2400087 Msa0187690:intron 25.0%
!! TAAACCAATTAACTGACTTT+GGG - chr2_1:2400179-2400198 None:intergenic 25.0%
! AAATAAAATTGACGAAGCAT+AGG - chr2_1:2400373-2400392 None:intergenic 25.0%
!!! GCTTCGTCAATTTTATTTAT+AGG + chr2_1:2400375-2400394 Msa0187690:intron 25.0%
!! TTTAAAAGTACAATTTCCAG+CGG + chr2_1:2400708-2400727 Msa0187690:intron 25.0%
!!! AAGTTTTACTTTTGCTTGTA+CGG + chr2_1:2401342-2401361 Msa0187690:three_prime_UTR 25.0%
!!! CCATAATTCATTAACTTGTA+TGG - chr2_1:2401421-2401440 None:intergenic 25.0%
! CCATACAAGTTAATGAATTA+TGG + chr2_1:2401418-2401437 Msa0187690:three_prime_UTR 25.0%
!!! CATTTTTTTTGATTCAGGAA+CGG - chr2_1:2399220-2399239 None:intergenic 25.0%
! GTTCCTGAATCAAAAAAAAT+GGG + chr2_1:2399219-2399238 Msa0187690:exon 25.0%
!!! TTACCCATTTTTTTTGATTC+AGG - chr2_1:2399225-2399244 None:intergenic 25.0%
! AAAAAATTAAACCTGGTGTT+TGG - chr2_1:2399714-2399733 None:intergenic 25.0%
! ATAATTTAGCTAACATTGAG+AGG + chr2_1:2400068-2400087 Msa0187690:intron 25.0%
!! TAAACCAATTAACTGACTTT+GGG - chr2_1:2400179-2400198 None:intergenic 25.0%
! AAATAAAATTGACGAAGCAT+AGG - chr2_1:2400373-2400392 None:intergenic 25.0%
!!! GCTTCGTCAATTTTATTTAT+AGG + chr2_1:2400375-2400394 Msa0187690:intron 25.0%
!! TTTAAAAGTACAATTTCCAG+CGG + chr2_1:2400708-2400727 Msa0187690:intron 25.0%
!!! AAGTTTTACTTTTGCTTGTA+CGG + chr2_1:2401342-2401361 Msa0187690:three_prime_UTR 25.0%
!!! CCATAATTCATTAACTTGTA+TGG - chr2_1:2401421-2401440 None:intergenic 25.0%
! CCATACAAGTTAATGAATTA+TGG + chr2_1:2401418-2401437 Msa0187690:three_prime_UTR 25.0%
CGTTCCTGAATCAAAAAAAA+TGG + chr2_1:2399218-2399237 Msa0187690:exon 30.0%
AATTCTCACTTCAAATGCAA+TGG - chr2_1:2399327-2399346 None:intergenic 30.0%
! TGCATTTGAAGTGAGAATTA+AGG + chr2_1:2399328-2399347 Msa0187690:intron 30.0%
TTATATGGAAGCTGCTTATA+TGG + chr2_1:2399496-2399515 Msa0187690:intron 30.0%
!!! TTTTTTACAGCAAAGTTGTG+AGG + chr2_1:2399555-2399574 Msa0187690:intron 30.0%
AATCATTGCTACAACACTAT+TGG - chr2_1:2399794-2399813 None:intergenic 30.0%
!! TTGTAATTTGCTTCTGTATG+TGG + chr2_1:2399885-2399904 Msa0187690:intron 30.0%
! TAGCTATAATTTTCCGATGT+GGG - chr2_1:2399983-2400002 None:intergenic 30.0%
! ATAGCTATAATTTTCCGATG+TGG - chr2_1:2399984-2400003 None:intergenic 30.0%
TCATAGAGATATAACAAGTG+TGG + chr2_1:2400003-2400022 Msa0187690:intron 30.0%
GTTAGCTAAATTATCGATGT+GGG - chr2_1:2400062-2400081 None:intergenic 30.0%
TGTTAGCTAAATTATCGATG+TGG - chr2_1:2400063-2400082 None:intergenic 30.0%
! AAACCAATTAACTGACTTTG+GGG - chr2_1:2400178-2400197 None:intergenic 30.0%
! CTAAACCAATTAACTGACTT+TGG - chr2_1:2400180-2400199 None:intergenic 30.0%
TGCAAATTCTTGAAGAATTC+TGG + chr2_1:2400270-2400289 Msa0187690:intron 30.0%
TATTCTACATTGTAGCAGTT+AGG + chr2_1:2400424-2400443 Msa0187690:intron 30.0%
ATTCTACATTGTAGCAGTTA+GGG + chr2_1:2400425-2400444 Msa0187690:intron 30.0%
AGGGATTTAAACATTGGTAA+TGG + chr2_1:2400444-2400463 Msa0187690:intron 30.0%
! TTCGTATCAGTATCCTATTT+TGG + chr2_1:2400604-2400623 Msa0187690:intron 30.0%
! TCGTATCAGTATCCTATTTT+GGG + chr2_1:2400605-2400624 Msa0187690:intron 30.0%
AAATATATGCACGATTACTG+TGG + chr2_1:2400660-2400679 Msa0187690:intron 30.0%
! TTAAAAGTACAATTTCCAGC+GGG + chr2_1:2400709-2400728 Msa0187690:intron 30.0%
TATTATACACTGTAGCAGTT+AGG + chr2_1:2400734-2400753 Msa0187690:intron 30.0%
ATTATACACTGTAGCAGTTA+GGG + chr2_1:2400735-2400754 Msa0187690:intron 30.0%
TTACAAGGGAAACATCAAAT+GGG - chr2_1:2400979-2400998 None:intergenic 30.0%
TTTACAAGGGAAACATCAAA+TGG - chr2_1:2400980-2400999 None:intergenic 30.0%
GTGTTCAAGTCAATTTACAA+GGG - chr2_1:2400993-2401012 None:intergenic 30.0%
TTGATTGCATACTTTCTTAG+TGG - chr2_1:2401114-2401133 None:intergenic 30.0%
AAAGTATGCAATCAAAGCTT+AGG + chr2_1:2401119-2401138 Msa0187690:CDS 30.0%
!! GCTTACTTAATTTGTTTGTC+TGG + chr2_1:2401194-2401213 Msa0187690:three_prime_UTR 30.0%
AGACAAAAATTGGAATGCAT+AGG - chr2_1:2401228-2401247 None:intergenic 30.0%
! AGTGTTTAAGTAGTCTTGAA+AGG - chr2_1:2401388-2401407 None:intergenic 30.0%
!! AATTCATTAACTTGTATGGG+AGG - chr2_1:2401417-2401436 None:intergenic 30.0%
CGTTCCTGAATCAAAAAAAA+TGG + chr2_1:2399218-2399237 Msa0187690:exon 30.0%
AATTCTCACTTCAAATGCAA+TGG - chr2_1:2399327-2399346 None:intergenic 30.0%
! TGCATTTGAAGTGAGAATTA+AGG + chr2_1:2399328-2399347 Msa0187690:intron 30.0%
TTATATGGAAGCTGCTTATA+TGG + chr2_1:2399496-2399515 Msa0187690:intron 30.0%
!!! TTTTTTACAGCAAAGTTGTG+AGG + chr2_1:2399555-2399574 Msa0187690:intron 30.0%
AATCATTGCTACAACACTAT+TGG - chr2_1:2399794-2399813 None:intergenic 30.0%
!! TTGTAATTTGCTTCTGTATG+TGG + chr2_1:2399885-2399904 Msa0187690:intron 30.0%
! TAGCTATAATTTTCCGATGT+GGG - chr2_1:2399983-2400002 None:intergenic 30.0%
! ATAGCTATAATTTTCCGATG+TGG - chr2_1:2399984-2400003 None:intergenic 30.0%
TCATAGAGATATAACAAGTG+TGG + chr2_1:2400003-2400022 Msa0187690:intron 30.0%
GTTAGCTAAATTATCGATGT+GGG - chr2_1:2400062-2400081 None:intergenic 30.0%
TGTTAGCTAAATTATCGATG+TGG - chr2_1:2400063-2400082 None:intergenic 30.0%
! AAACCAATTAACTGACTTTG+GGG - chr2_1:2400178-2400197 None:intergenic 30.0%
! CTAAACCAATTAACTGACTT+TGG - chr2_1:2400180-2400199 None:intergenic 30.0%
TGCAAATTCTTGAAGAATTC+TGG + chr2_1:2400270-2400289 Msa0187690:intron 30.0%
TATTCTACATTGTAGCAGTT+AGG + chr2_1:2400424-2400443 Msa0187690:intron 30.0%
ATTCTACATTGTAGCAGTTA+GGG + chr2_1:2400425-2400444 Msa0187690:intron 30.0%
AGGGATTTAAACATTGGTAA+TGG + chr2_1:2400444-2400463 Msa0187690:intron 30.0%
! TTCGTATCAGTATCCTATTT+TGG + chr2_1:2400604-2400623 Msa0187690:intron 30.0%
! TCGTATCAGTATCCTATTTT+GGG + chr2_1:2400605-2400624 Msa0187690:intron 30.0%
AAATATATGCACGATTACTG+TGG + chr2_1:2400660-2400679 Msa0187690:intron 30.0%
! TTAAAAGTACAATTTCCAGC+GGG + chr2_1:2400709-2400728 Msa0187690:intron 30.0%
TATTATACACTGTAGCAGTT+AGG + chr2_1:2400734-2400753 Msa0187690:intron 30.0%
ATTATACACTGTAGCAGTTA+GGG + chr2_1:2400735-2400754 Msa0187690:intron 30.0%
TTACAAGGGAAACATCAAAT+GGG - chr2_1:2400979-2400998 None:intergenic 30.0%
TTTACAAGGGAAACATCAAA+TGG - chr2_1:2400980-2400999 None:intergenic 30.0%
GTGTTCAAGTCAATTTACAA+GGG - chr2_1:2400993-2401012 None:intergenic 30.0%
TTGATTGCATACTTTCTTAG+TGG - chr2_1:2401114-2401133 None:intergenic 30.0%
AAAGTATGCAATCAAAGCTT+AGG + chr2_1:2401119-2401138 Msa0187690:CDS 30.0%
!! GCTTACTTAATTTGTTTGTC+TGG + chr2_1:2401194-2401213 Msa0187690:three_prime_UTR 30.0%
AGACAAAAATTGGAATGCAT+AGG - chr2_1:2401228-2401247 None:intergenic 30.0%
! AGTGTTTAAGTAGTCTTGAA+AGG - chr2_1:2401388-2401407 None:intergenic 30.0%
!! AATTCATTAACTTGTATGGG+AGG - chr2_1:2401417-2401436 None:intergenic 30.0%
!!! TCCTTGCGATTTTAACTGTA+GGG + chr2_1:2399164-2399183 Msa0187690:five_prime_UTR 35.0%
!! TACATTTTGGAGAGCTTGTT+AGG - chr2_1:2399458-2399477 None:intergenic 35.0%
!! TGGTAATCGCGTTTTGTTAA+TGG + chr2_1:2399516-2399535 Msa0187690:intron 35.0%
ATTAAACCTGGTGTTTGGTA+AGG - chr2_1:2399709-2399728 None:intergenic 35.0%
TGTTTGTTTGGTTGTGTTTC+TGG + chr2_1:2399743-2399762 Msa0187690:intron 35.0%
ATTTGCTTCTGTATGTGGTA+TGG + chr2_1:2399890-2399909 Msa0187690:intron 35.0%
AGCTATCCAATGTGTATCAA+AGG - chr2_1:2400128-2400147 None:intergenic 35.0%
! GTTCATTCAAAATGGTTTGC+TGG + chr2_1:2400235-2400254 Msa0187690:intron 35.0%
GCAGTTAGGGATTTAAACAT+TGG + chr2_1:2400438-2400457 Msa0187690:intron 35.0%
GTAATCAAATACGTTGGATG+TGG + chr2_1:2400492-2400511 Msa0187690:intron 35.0%
TGTTGTAGTCATATTGCAGT+CGG + chr2_1:2400518-2400537 Msa0187690:intron 35.0%
!!! AGGGTTTTAGATAGAGGTAA+TGG + chr2_1:2400754-2400773 Msa0187690:intron 35.0%
! ATAGAGGTAATGGTTGTGTA+GGG + chr2_1:2400764-2400783 Msa0187690:intron 35.0%
TAGGGTTTCATGATATTGCA+GGG + chr2_1:2400782-2400801 Msa0187690:intron 35.0%
CAGAAAATTGTAGTCAGATG+CGG + chr2_1:2400818-2400837 Msa0187690:intron 35.0%
! AACAATGGGACTGCAATTTT+AGG - chr2_1:2400853-2400872 None:intergenic 35.0%
GTTATCTCTCCAACAACAAT+GGG - chr2_1:2400867-2400886 None:intergenic 35.0%
TAACGAAAACTCTGATGTTG+TGG + chr2_1:2400883-2400902 Msa0187690:intron 35.0%
CGTGTTCAAGTCAATTTACA+AGG - chr2_1:2400994-2401013 None:intergenic 35.0%
!!! TCCTTGCGATTTTAACTGTA+GGG + chr2_1:2399164-2399183 Msa0187690:five_prime_UTR 35.0%
!! TACATTTTGGAGAGCTTGTT+AGG - chr2_1:2399458-2399477 None:intergenic 35.0%
!! TGGTAATCGCGTTTTGTTAA+TGG + chr2_1:2399516-2399535 Msa0187690:intron 35.0%
ATTAAACCTGGTGTTTGGTA+AGG - chr2_1:2399709-2399728 None:intergenic 35.0%
TGTTTGTTTGGTTGTGTTTC+TGG + chr2_1:2399743-2399762 Msa0187690:intron 35.0%
ATTTGCTTCTGTATGTGGTA+TGG + chr2_1:2399890-2399909 Msa0187690:intron 35.0%
AGCTATCCAATGTGTATCAA+AGG - chr2_1:2400128-2400147 None:intergenic 35.0%
! GTTCATTCAAAATGGTTTGC+TGG + chr2_1:2400235-2400254 Msa0187690:intron 35.0%
GCAGTTAGGGATTTAAACAT+TGG + chr2_1:2400438-2400457 Msa0187690:intron 35.0%
GTAATCAAATACGTTGGATG+TGG + chr2_1:2400492-2400511 Msa0187690:intron 35.0%
TGTTGTAGTCATATTGCAGT+CGG + chr2_1:2400518-2400537 Msa0187690:intron 35.0%
!!! AGGGTTTTAGATAGAGGTAA+TGG + chr2_1:2400754-2400773 Msa0187690:intron 35.0%
! ATAGAGGTAATGGTTGTGTA+GGG + chr2_1:2400764-2400783 Msa0187690:intron 35.0%
TAGGGTTTCATGATATTGCA+GGG + chr2_1:2400782-2400801 Msa0187690:intron 35.0%
CAGAAAATTGTAGTCAGATG+CGG + chr2_1:2400818-2400837 Msa0187690:intron 35.0%
! AACAATGGGACTGCAATTTT+AGG - chr2_1:2400853-2400872 None:intergenic 35.0%
GTTATCTCTCCAACAACAAT+GGG - chr2_1:2400867-2400886 None:intergenic 35.0%
TAACGAAAACTCTGATGTTG+TGG + chr2_1:2400883-2400902 Msa0187690:intron 35.0%
CGTGTTCAAGTCAATTTACA+AGG - chr2_1:2400994-2401013 None:intergenic 35.0%
!!! GTCCTTGCGATTTTAACTGT+AGG + chr2_1:2399163-2399182 Msa0187690:five_prime_UTR 40.0%
ACCCTACAGTTAAAATCGCA+AGG - chr2_1:2399168-2399187 None:intergenic 40.0%
!! TTTTGATTCAGGAACGGCTA+TGG - chr2_1:2399214-2399233 None:intergenic 40.0%
!! GAATTAAGGTGTTCGAGTTG+AGG + chr2_1:2399342-2399361 Msa0187690:CDS 40.0%
TGGTTCAGCAAATCAGCTTT+GGG - chr2_1:2399374-2399393 None:intergenic 40.0%
TTCTTAGGACGAAGATCAAG+TGG - chr2_1:2399665-2399684 None:intergenic 40.0%
TTCTGTATGTGGTATGGACT+CGG + chr2_1:2399896-2399915 Msa0187690:intron 40.0%
TACAAATTAGCAGCCCACAT+CGG + chr2_1:2399967-2399986 Msa0187690:intron 40.0%
ATCCAATGTGTATCAAAGGC+TGG - chr2_1:2400124-2400143 None:intergenic 40.0%
!! CACATTGGATAGCTTTGAAC+TGG + chr2_1:2400134-2400153 Msa0187690:intron 40.0%
!! TTGGATAGCTTTGAACTGGT+TGG + chr2_1:2400138-2400157 Msa0187690:intron 40.0%
ACACCCCAAAGTCAGTTAAT+TGG + chr2_1:2400172-2400191 Msa0187690:intron 40.0%
ATTCGCAGAAGTAACGATAC+CGG + chr2_1:2400300-2400319 Msa0187690:intron 40.0%
ATGGTTGTGTCGCAATTATG+TGG + chr2_1:2400463-2400482 Msa0187690:intron 40.0%
CAAAATATAGGCTGCAGCAT+CGG - chr2_1:2400558-2400577 None:intergenic 40.0%
CACATGCTGAAACCCAAAAT+AGG - chr2_1:2400620-2400639 None:intergenic 40.0%
ACAGTGTATAATATACCCGC+TGG - chr2_1:2400727-2400746 None:intergenic 40.0%
!!! GCAGTTAGGGTTTTAGATAG+AGG + chr2_1:2400748-2400767 Msa0187690:intron 40.0%
! GATAGAGGTAATGGTTGTGT+AGG + chr2_1:2400763-2400782 Msa0187690:intron 40.0%
GTAGGGTTTCATGATATTGC+AGG + chr2_1:2400781-2400800 Msa0187690:intron 40.0%
AATTGCAGTCCCATTGTTGT+TGG + chr2_1:2400855-2400874 Msa0187690:intron 40.0%
CGTTATCTCTCCAACAACAA+TGG - chr2_1:2400868-2400887 None:intergenic 40.0%
CAAATGGGTGAATGCTACTA+AGG - chr2_1:2400964-2400983 None:intergenic 40.0%
AGATGATGCATAAATACCGC+CGG - chr2_1:2401023-2401042 None:intergenic 40.0%
! CATCTTACCAGCCTTTTGTT+TGG + chr2_1:2401038-2401057 Msa0187690:intron 40.0%
ATCTATCTTGAGACTTCCGA+AGG + chr2_1:2401290-2401309 Msa0187690:three_prime_UTR 40.0%
!!! GTCCTTGCGATTTTAACTGT+AGG + chr2_1:2399163-2399182 Msa0187690:five_prime_UTR 40.0%
ACCCTACAGTTAAAATCGCA+AGG - chr2_1:2399168-2399187 None:intergenic 40.0%
!! TTTTGATTCAGGAACGGCTA+TGG - chr2_1:2399214-2399233 None:intergenic 40.0%
!! GAATTAAGGTGTTCGAGTTG+AGG + chr2_1:2399342-2399361 Msa0187690:CDS 40.0%
TGGTTCAGCAAATCAGCTTT+GGG - chr2_1:2399374-2399393 None:intergenic 40.0%
TTCTTAGGACGAAGATCAAG+TGG - chr2_1:2399665-2399684 None:intergenic 40.0%
TTCTGTATGTGGTATGGACT+CGG + chr2_1:2399896-2399915 Msa0187690:intron 40.0%
TACAAATTAGCAGCCCACAT+CGG + chr2_1:2399967-2399986 Msa0187690:intron 40.0%
ATCCAATGTGTATCAAAGGC+TGG - chr2_1:2400124-2400143 None:intergenic 40.0%
!! CACATTGGATAGCTTTGAAC+TGG + chr2_1:2400134-2400153 Msa0187690:intron 40.0%
!! TTGGATAGCTTTGAACTGGT+TGG + chr2_1:2400138-2400157 Msa0187690:intron 40.0%
ACACCCCAAAGTCAGTTAAT+TGG + chr2_1:2400172-2400191 Msa0187690:intron 40.0%
ATTCGCAGAAGTAACGATAC+CGG + chr2_1:2400300-2400319 Msa0187690:intron 40.0%
ATGGTTGTGTCGCAATTATG+TGG + chr2_1:2400463-2400482 Msa0187690:intron 40.0%
CAAAATATAGGCTGCAGCAT+CGG - chr2_1:2400558-2400577 None:intergenic 40.0%
CACATGCTGAAACCCAAAAT+AGG - chr2_1:2400620-2400639 None:intergenic 40.0%
ACAGTGTATAATATACCCGC+TGG - chr2_1:2400727-2400746 None:intergenic 40.0%
!!! GCAGTTAGGGTTTTAGATAG+AGG + chr2_1:2400748-2400767 Msa0187690:intron 40.0%
! GATAGAGGTAATGGTTGTGT+AGG + chr2_1:2400763-2400782 Msa0187690:intron 40.0%
GTAGGGTTTCATGATATTGC+AGG + chr2_1:2400781-2400800 Msa0187690:intron 40.0%
AATTGCAGTCCCATTGTTGT+TGG + chr2_1:2400855-2400874 Msa0187690:intron 40.0%
CGTTATCTCTCCAACAACAA+TGG - chr2_1:2400868-2400887 None:intergenic 40.0%
CAAATGGGTGAATGCTACTA+AGG - chr2_1:2400964-2400983 None:intergenic 40.0%
AGATGATGCATAAATACCGC+CGG - chr2_1:2401023-2401042 None:intergenic 40.0%
! CATCTTACCAGCCTTTTGTT+TGG + chr2_1:2401038-2401057 Msa0187690:intron 40.0%
ATCTATCTTGAGACTTCCGA+AGG + chr2_1:2401290-2401309 Msa0187690:three_prime_UTR 40.0%
CTGGTTCAGCAAATCAGCTT+TGG - chr2_1:2399375-2399394 None:intergenic 45.0%
!! TGATTTGCTGAACCAGCTGA+AGG + chr2_1:2399379-2399398 Msa0187690:CDS 45.0%
! TAAGGCGTCTTCTGATAGCA+CGG - chr2_1:2399691-2399710 None:intergenic 45.0%
TCTGTATGTGGTATGGACTC+GGG + chr2_1:2399897-2399916 Msa0187690:intron 45.0%
GACCAGCCTTTGATACACAT+TGG + chr2_1:2400119-2400138 Msa0187690:intron 45.0%
GCAGATTGGTACTCATGTAC+CGG - chr2_1:2400322-2400341 None:intergenic 45.0%
GGTACATGAGTACCAATCTG+CGG + chr2_1:2400321-2400340 Msa0187690:intron 45.0%
CAGAATTTGCAGGACCACTT+GGG - chr2_1:2400348-2400367 None:intergenic 45.0%
ACAGAATTTGCAGGACCACT+TGG - chr2_1:2400349-2400368 None:intergenic 45.0%
AGCATAGGCACAGAATTTGC+AGG - chr2_1:2400358-2400377 None:intergenic 45.0%
TGACTTGAACACGTGTTTCC+CGG + chr2_1:2401001-2401020 Msa0187690:intron 45.0%
GATGATGCATAAATACCGCC+GGG - chr2_1:2401022-2401041 None:intergenic 45.0%
ATGCAATCAAAGCTTAGGCG+AGG + chr2_1:2401124-2401143 Msa0187690:exon 45.0%
CTGGTTCAGCAAATCAGCTT+TGG - chr2_1:2399375-2399394 None:intergenic 45.0%
!! TGATTTGCTGAACCAGCTGA+AGG + chr2_1:2399379-2399398 Msa0187690:CDS 45.0%
! TAAGGCGTCTTCTGATAGCA+CGG - chr2_1:2399691-2399710 None:intergenic 45.0%
TCTGTATGTGGTATGGACTC+GGG + chr2_1:2399897-2399916 Msa0187690:intron 45.0%
GACCAGCCTTTGATACACAT+TGG + chr2_1:2400119-2400138 Msa0187690:intron 45.0%
GCAGATTGGTACTCATGTAC+CGG - chr2_1:2400322-2400341 None:intergenic 45.0%
GGTACATGAGTACCAATCTG+CGG + chr2_1:2400321-2400340 Msa0187690:intron 45.0%
CAGAATTTGCAGGACCACTT+GGG - chr2_1:2400348-2400367 None:intergenic 45.0%
ACAGAATTTGCAGGACCACT+TGG - chr2_1:2400349-2400368 None:intergenic 45.0%
AGCATAGGCACAGAATTTGC+AGG - chr2_1:2400358-2400377 None:intergenic 45.0%
TGACTTGAACACGTGTTTCC+CGG + chr2_1:2401001-2401020 Msa0187690:intron 45.0%
GATGATGCATAAATACCGCC+GGG - chr2_1:2401022-2401041 None:intergenic 45.0%
ATGCAATCAAAGCTTAGGCG+AGG + chr2_1:2401124-2401143 Msa0187690:exon 45.0%
! ACGGCTATGGAGTGATAGTG+AGG - chr2_1:2399201-2399220 None:intergenic 50.0%
GAACCAGCTGAAGGATCTGA+AGG + chr2_1:2399388-2399407 Msa0187690:CDS 50.0%
CTGATAGCACGGGTCTTCTT+AGG - chr2_1:2399680-2399699 None:intergenic 50.0%
! AAGGCGTCTTCTGATAGCAC+GGG - chr2_1:2399690-2399709 None:intergenic 50.0%
AAGACGCCTTACCAAACACC+AGG + chr2_1:2399700-2399719 Msa0187690:CDS 50.0%
TGTGGCGCAGATAGTTGTCA+TGG + chr2_1:2400921-2400940 Msa0187690:intron 50.0%
!!! ACCAGCCTTTTGTTTGGTGC+AGG + chr2_1:2401044-2401063 Msa0187690:intron 50.0%
CGATGCCTGCACCAAACAAA+AGG - chr2_1:2401052-2401071 None:intergenic 50.0%
GACAGAGCGAGAGAAGAAGA+AGG + chr2_1:2401077-2401096 Msa0187690:CDS 50.0%
! ACGGCTATGGAGTGATAGTG+AGG - chr2_1:2399201-2399220 None:intergenic 50.0%
GAACCAGCTGAAGGATCTGA+AGG + chr2_1:2399388-2399407 Msa0187690:CDS 50.0%
CTGATAGCACGGGTCTTCTT+AGG - chr2_1:2399680-2399699 None:intergenic 50.0%
! AAGGCGTCTTCTGATAGCAC+GGG - chr2_1:2399690-2399709 None:intergenic 50.0%
AAGACGCCTTACCAAACACC+AGG + chr2_1:2399700-2399719 Msa0187690:CDS 50.0%
TGTGGCGCAGATAGTTGTCA+TGG + chr2_1:2400921-2400940 Msa0187690:intron 50.0%
!!! ACCAGCCTTTTGTTTGGTGC+AGG + chr2_1:2401044-2401063 Msa0187690:intron 50.0%
CGATGCCTGCACCAAACAAA+AGG - chr2_1:2401052-2401071 None:intergenic 50.0%
GACAGAGCGAGAGAAGAAGA+AGG + chr2_1:2401077-2401096 Msa0187690:CDS 50.0%
CCAGCTGAAGGATCTGAAGG+CGG + chr2_1:2399391-2399410 Msa0187690:CDS 55.0%
CTTCGAGTCGCCAAAGTCAC+CGG + chr2_1:2399425-2399444 Msa0187690:CDS 55.0%
!! GACTTTGGGGTGTGCATCAC+AGG - chr2_1:2400165-2400184 None:intergenic 55.0%
TACCAATCTGCGGACCCAAG+TGG + chr2_1:2400331-2400350 Msa0187690:intron 55.0%
TGGCGCAGACTCTGATGTTG+TGG + chr2_1:2400903-2400922 Msa0187690:intron 55.0%
CTTGAACACGTGTTTCCCGG+CGG + chr2_1:2401004-2401023 Msa0187690:intron 55.0%
GCCTGCACCAAACAAAAGGC+TGG - chr2_1:2401048-2401067 None:intergenic 55.0%
CCAGCTGAAGGATCTGAAGG+CGG + chr2_1:2399391-2399410 Msa0187690:CDS 55.0%
CTTCGAGTCGCCAAAGTCAC+CGG + chr2_1:2399425-2399444 Msa0187690:CDS 55.0%
!! GACTTTGGGGTGTGCATCAC+AGG - chr2_1:2400165-2400184 None:intergenic 55.0%
TACCAATCTGCGGACCCAAG+TGG + chr2_1:2400331-2400350 Msa0187690:intron 55.0%
TGGCGCAGACTCTGATGTTG+TGG + chr2_1:2400903-2400922 Msa0187690:intron 55.0%
CTTGAACACGTGTTTCCCGG+CGG + chr2_1:2401004-2401023 Msa0187690:intron 55.0%
GCCTGCACCAAACAAAAGGC+TGG - chr2_1:2401048-2401067 None:intergenic 55.0%
CCGCCTTCAGATCCTTCAGC+TGG - chr2_1:2399394-2399413 None:intergenic 60.0%
!! GAGCTTGTTAGGTGCACCGC+CGG - chr2_1:2399447-2399466 None:intergenic 60.0%
GCAGAAAGCTGCGCTCAGAG+AGG + chr2_1:2399616-2399635 Msa0187690:CDS 60.0%
GACCACTTGGGTCCGCAGAT+TGG - chr2_1:2400336-2400355 None:intergenic 60.0%
CCGCCTTCAGATCCTTCAGC+TGG - chr2_1:2399394-2399413 None:intergenic 60.0%
!! GAGCTTGTTAGGTGCACCGC+CGG - chr2_1:2399447-2399466 None:intergenic 60.0%
GCAGAAAGCTGCGCTCAGAG+AGG + chr2_1:2399616-2399635 Msa0187690:CDS 60.0%
GACCACTTGGGTCCGCAGAT+TGG - chr2_1:2400336-2400355 None:intergenic 60.0%
CGAGTCGCCAAAGTCACCGG+CGG + chr2_1:2399428-2399447 Msa0187690:CDS 65.0%
AGGTGCACCGCCGGTGACTT+TGG - chr2_1:2399438-2399457 None:intergenic 65.0%
CGAGTCGCCAAAGTCACCGG+CGG + chr2_1:2399428-2399447 Msa0187690:CDS 65.0%
AGGTGCACCGCCGGTGACTT+TGG - chr2_1:2399438-2399457 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 2399155 2401452 2399155 ID=Msa0187690;Name=Msa0187690
chr2_1 mRNA 2399155 2401452 2399155 ID=Msa0187690-mRNA-1;Parent=Msa0187690;Name=Msa0187690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=82|1|1|1|1|1|4|312|123
chr2_1 exon 2399155 2399240 2399155 ID=Msa0187690-mRNA-1:exon:1155;Parent=Msa0187690-mRNA-1
chr2_1 exon 2399339 2399474 2399339 ID=Msa0187690-mRNA-1:exon:1156;Parent=Msa0187690-mRNA-1
chr2_1 exon 2399565 2399721 2399565 ID=Msa0187690-mRNA-1:exon:1157;Parent=Msa0187690-mRNA-1
chr2_1 exon 2401066 2401452 2401066 ID=Msa0187690-mRNA-1:exon:1158;Parent=Msa0187690-mRNA-1
chr2_1 five_prime_UTR 2399155 2399236 2399155 ID=Msa0187690-mRNA-1:five_prime_utr;Parent=Msa0187690-mRNA-1
chr2_1 CDS 2399237 2399240 2399237 ID=Msa0187690-mRNA-1:cds;Parent=Msa0187690-mRNA-1
chr2_1 CDS 2399339 2399474 2399339 ID=Msa0187690-mRNA-1:cds;Parent=Msa0187690-mRNA-1
chr2_1 CDS 2399565 2399721 2399565 ID=Msa0187690-mRNA-1:cds;Parent=Msa0187690-mRNA-1
chr2_1 CDS 2401066 2401140 2401066 ID=Msa0187690-mRNA-1:cds;Parent=Msa0187690-mRNA-1
chr2_1 three_prime_UTR 2401141 2401452 2401141 ID=Msa0187690-mRNA-1:three_prime_utr;Parent=Msa0187690-mRNA-1
Gene Sequence

>Msa0187690

ATGGTGAGAATTAAGGTGTTCGAGTTGAGGAACAAACCCAAAGCTGATTTGCTGAACCAGCTGAAGGATCTGAAGGCGGAGCTCGCTTTGCTTCGAGTCGCCAAAGTCACCGGCGGTGCACCTAACAAGCTCTCCAAAATCAAAGTTGTGAGGCTTTCAATTGCACAAGTGTTGACAGTGATTTCACAGAAGCAGAAAGCTGCGCTCAGAGAGGTTTACAAAAATAAGAAGTATTTACCACTTGATCTTCGTCCTAAGAAGACCCGTGCTATCAGAAGACGCCTTACCAAACACCAGGCATCGTTGAAGACAGAGCGAGAGAAGAAGAAGGAGATATACTTTCCACTAAGAAAGTATGCAATCAAAGCTTAG

Protein sequence

>Msa0187690

MVRIKVFELRNKPKADLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKKEIYFPLRKYAIKA*