AlfalfaGEDB | Msa1363330

M. sativa cultivar zhongmu-4 / Msa1363330

KEGG: K02947|K09422
GO: GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032
PFAM: PF03501.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363330	XP_013447094.1	100.000	177	0	0	1	177	1	177	5.27e-124	356

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363330	sp\|Q9SW09\|RS101_ARATH	82.237	152	25	1	1	152	1	150	1.68e-78	234

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363330	I3SV05	100.000	177	0	0	1	177	1	177	2.52e-124	356

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa1363330	0.827784	1.291810e-54	-8.615850e-47
Msa0002490	Msa1363330	0.825926	3.591300e-54	-8.615850e-47
Msa0002750	Msa1363330	0.898422	5.388033e-77	-8.615850e-47
Msa0002790	Msa1363330	0.898109	7.321754e-77	-8.615850e-47
Msa0003640	Msa1363330	0.804628	1.971552e-49	-8.615850e-47
Msa0003720	Msa1363330	0.875119	3.961221e-68	-8.615850e-47
Msa0003780	Msa1363330	0.886116	4.523599e-72	-8.615850e-47
Msa0004540	Msa1363330	0.811273	7.601692e-51	-8.615850e-47
Msa0004950	Msa1363330	0.828739	7.605854e-55	-8.615850e-47
Msa0004980	Msa1363330	0.829797	4.211171e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363330	MtrunA17_Chr8g0387411	100.000	177	0	0	1	177	1	177	4.85e-128	356
Msa1363330	MtrunA17_Chr5g0397241	93.889	180	8	1	1	177	1	180	2.12e-120	337

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1363330	AT4G25740.1	82.237	152	25	1	1	152	1	150	1.71e-79	234
Msa1363330	AT5G52650.1	82.468	154	25	1	1	152	1	154	4.26e-74	220
Msa1363330	AT5G41520.1	75.817	153	31	5	1	150	1	150	6.82e-70	210
Msa1363330	AT4G25740.2	64.706	170	30	1	1	170	1	140	7.18e-60	183
Msa1363330	AT5G41520.2	75.701	107	21	4	46	150	1	104	8.10e-43	139

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Find 75 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGGAACATCGATTTC+TGG	0.305282	tig0018036:+141925	None:intergenic
AAGAAACAAGCTAAGCCACC+TGG	0.590290	tig0018036:-141748	Msa1363330:CDS
AAGCCACCTGGTAGACCTTT+TGG	0.340230	tig0018036:-141736	Msa1363330:CDS
AATAAGCTTACCCCAAATGA+GGG	0.606777	tig0018036:+141490	None:intergenic
AATATAATATACCTTGGAAA+AGG	0.503793	tig0018036:+142084	None:intergenic
AATCGATGTTCCAAATTTGC+AGG	0.408613	tig0018036:-141920	Msa1363330:CDS
AATGAGGGTCTGTAATCAGC+AGG	0.552369	tig0018036:+141505	None:intergenic
AGAGACACAAGAGTAGCACG+CGG	0.744116	tig0018036:-142269	Msa1363330:five_prime_UTR
AGAGTGGAAGCGAGTGAAGA+AGG	0.427354	tig0018036:+142237	None:intergenic
AGATTTGGTGGTGACCGTGA+TGG	0.637024	tig0018036:-141577	Msa1363330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCCCTTATTCTTCATTCTA+GGG	-	tig0018036:140331-140350	Msa1363330:three_prime_UTR	30.0%
AACCCTAGAATGAAGAATAA+GGG	+	tig0018036:140336-140355	None:intergenic	30.0%
TTCTGAATTGTTGAATGTAG+AGG	-	tig0018036:140538-140557	Msa1363330:intron	30.0%
TCTGAATTGTTGAATGTAGA+GGG	-	tig0018036:140539-140558	Msa1363330:intron	30.0%
GTAATAATTCATCCAAGCAA+AGG	+	tig0018036:140681-140700	None:intergenic	30.0%
TTGCTTGGATGAATTATTAC+TGG	-	tig0018036:140681-140700	Msa1363330:intron	30.0%
GAAATGAAGTGATAATACCT+AGG	+	tig0018036:140836-140855	None:intergenic	30.0%
TATTCATCAACAACGCAATT+GGG	+	tig0018036:141187-141206	None:intergenic	30.0%
TTATTCATCAACAACGCAAT+TGG	+	tig0018036:141188-141207	None:intergenic	30.0%
ATGATAATACCAATGCTAAC+TGG	+	tig0018036:141258-141277	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018036	gene	140178	142371	140178	ID=Msa1363330;Name=Msa1363330
tig0018036	mRNA	140178	142371	140178	ID=Msa1363330-mRNA-1;Parent=Msa1363330;Name=Msa1363330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=144\|1\|1\|1\|1\|1\|5\|264\|177
tig0018036	exon	140178	140516	140178	ID=Msa1363330-mRNA-1:exon:13525;Parent=Msa1363330-mRNA-1
tig0018036	exon	141501	141627	141501	ID=Msa1363330-mRNA-1:exon:13524;Parent=Msa1363330-mRNA-1
tig0018036	exon	141712	141991	141712	ID=Msa1363330-mRNA-1:exon:13523;Parent=Msa1363330-mRNA-1
tig0018036	exon	142096	142144	142096	ID=Msa1363330-mRNA-1:exon:13522;Parent=Msa1363330-mRNA-1
tig0018036	exon	142225	142371	142225	ID=Msa1363330-mRNA-1:exon:13521;Parent=Msa1363330-mRNA-1
tig0018036	five_prime_UTR	142228	142371	142228	ID=Msa1363330-mRNA-1:five_prime_utr;Parent=Msa1363330-mRNA-1
tig0018036	CDS	142225	142227	142225	ID=Msa1363330-mRNA-1:cds;Parent=Msa1363330-mRNA-1
tig0018036	CDS	142096	142144	142096	ID=Msa1363330-mRNA-1:cds;Parent=Msa1363330-mRNA-1
tig0018036	CDS	141712	141991	141712	ID=Msa1363330-mRNA-1:cds;Parent=Msa1363330-mRNA-1
tig0018036	CDS	141501	141627	141501	ID=Msa1363330-mRNA-1:cds;Parent=Msa1363330-mRNA-1
tig0018036	CDS	140442	140516	140442	ID=Msa1363330-mRNA-1:cds;Parent=Msa1363330-mRNA-1
tig0018036	three_prime_UTR	140178	140441	140178	ID=Msa1363330-mRNA-1:three_prime_utr;Parent=Msa1363330-mRNA-1

Gene Sequence

>Msa1363330

ATGATCATATCTGAGAAAAACCGCAAAGAGATCTGCAAGTACCTTTTCCAAGAGGGTGTATGCTATGCCAAGAAGGATTTCAATTTGGCAAAGCATCCAGAAATCGATGTTCCAAATTTGCAGGTGATTAAGCTTATGCAGAGCTTCAAATCAAGGGAATATGTTAGAGAAACCTTTGCTTGGATGAATTATTACTGGTTTCTCACTAATGACGGAATTGAGTTTCTCAGAACTTACTTGAATCTTCCTTCTGAGATTGTTCCTGCTACTTTGAAGAAACAAGCTAAGCCACCTGGTAGACCTTTTGGTGGTCCACAGGGTGATCGTCCTAGGGGTCCACCCAGATTTGAAGGGGAGAGGAGATTTGGTGGTGACCGTGATGGGTACCGTGGAGGTCCTCGTGGTGAATTTGGAGGAGACAAGGGAGGTGCTCCTGCTGATTACAGACCCTCATTTGGGGGTCCTGGTGGAAGGCCTGGATTTGGTCGTGGATCTGGTGGTTTTGGGGCTCCTCCAACTAGCTCAGATGCTTAA

Protein sequence

>Msa1363330

MIISEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMNYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPQGDRPRGPPRFEGERRFGGDRDGYRGGPRGEFGGDKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPPTSSDA*