AlfalfaGEDB | Msa0629220

M. sativa cultivar zhongmu-4 / Msa0629220

KEGG: K14496
GO: -
PFAM: PF10604.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629220	XP_003604555.1	95.413	218	7	1	1	218	1	215	9.66e-149	422

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629220	sp\|O80920\|PYL4_ARATH	67.052	173	53	2	47	218	37	206	5.48e-72	220

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0019570	Msa0629220	0.800858	1.182970e-48	-8.615850e-47
Msa0145200	Msa0629220	0.801497	8.756797e-49	-8.615850e-47
Msa0179830	Msa0629220	0.809919	1.491360e-50	-8.615850e-47
Msa0253160	Msa0629220	-0.802575	5.256685e-49	-8.615850e-47
Msa0291940	Msa0629220	-0.805185	1.508384e-49	-8.615850e-47
Msa0532210	Msa0629220	0.962627	4.201412e-121	-8.615850e-47
Msa0629220	Msa0667010	0.962938	1.775509e-121	-8.615850e-47
Msa0629220	Msa0690190	0.805757	1.143928e-49	-8.615850e-47
Msa0629220	Msa1025270	0.809272	2.054240e-50	-8.615850e-47
Msa0629220	Msa1050140	0.816453	5.487279e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629220	MtrunA17_Chr4g0005501	95.413	218	7	1	1	218	1	215	8.89e-153	422
Msa0629220	MtrunA17_Chr7g0243271	65.775	187	56	3	36	215	1	186	8.40e-77	229
Msa0629220	MtrunA17_Chr5g0437611	62.941	170	58	3	42	209	39	205	2.67e-70	213
Msa0629220	MtrunA17_Chr3g0114121	61.988	171	60	4	47	216	64	230	4.00e-69	211
Msa0629220	MtrunA17_Chr5g0411391	53.659	164	72	2	49	208	44	207	5.43e-55	174
Msa0629220	MtrunA17_Chr1g0158871	48.485	165	84	1	49	213	19	182	7.69e-55	173
Msa0629220	MtrunA17_Chr8g0347191	48.171	164	84	1	49	212	73	235	8.81e-54	172
Msa0629220	MtrunA17_Chr1g0151661	52.500	160	72	3	49	206	39	196	3.24e-53	170
Msa0629220	MtrunA17_Chr3g0126471	43.956	182	97	2	32	213	8	184	1.08e-52	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0629220	AT2G38310.1	67.052	173	53	2	47	218	37	206	5.58e-73	220
Msa0629220	AT5G05440.1	64.815	162	53	2	45	205	41	199	3.00e-70	213
Msa0629220	AT2G40330.1	59.064	171	65	3	45	211	44	213	4.11e-66	203
Msa0629220	AT5G53160.2	48.485	165	84	1	49	213	19	182	4.44e-56	177
Msa0629220	AT1G01360.1	47.531	162	84	1	52	213	24	184	1.89e-55	175
Msa0629220	AT2G26040.1	49.398	166	82	1	43	206	16	181	1.44e-53	170
Msa0629220	AT4G01026.1	49.068	161	81	1	53	213	27	186	1.48e-53	171
Msa0629220	AT4G27920.1	46.667	165	88	0	49	213	14	178	7.02e-52	166
Msa0629220	AT4G17870.1	48.810	168	85	1	45	211	13	180	8.32e-52	166
Msa0629220	AT1G73000.1	46.199	171	82	4	43	203	31	201	3.72e-44	147

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Find 72 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGTTGTAACCTCGTTGG+TGG	0.571438	4_3:-10096537	Msa0629220:CDS
ACACTTCATCCCTCCACAGA+GGG	0.594198	4_3:-10096354	Msa0629220:CDS
ACGCCTTGAGATCCTCGATG+AGG	0.696994	4_3:-10096445	Msa0629220:CDS
ACGGTGATGTGGGCACACTC+AGG	0.539446	4_3:-10096512	Msa0629220:CDS
AGAGGGTGACTGTTCCGGCA+CGG	0.639448	4_3:-10096337	Msa0629220:CDS
AGGAGAAGTGAAGACTTTGG+TGG	0.533916	4_3:+10096807	None:intergenic
AGGCTTGTGGTTTGTCGAAG+CGG	0.573243	4_3:+10096574	None:intergenic
AGGGAGGTCAACCTTATATC+TGG	0.399072	4_3:-10096492	Msa0629220:CDS
AGTCTTCACTTCTCCTCCAC+AGG	0.523366	4_3:-10096800	Msa0629220:CDS
AGTGAAGACTTTGGTGGATT+TGG	0.227133	4_3:+10096813	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAGTATTAGGAATGGTGT+TGG	+	chr4_3:10096312-10096331	None:intergenic	30.0%
TATTGAGTGTGTGTGATAGT+GGG	+	chr4_3:10096336-10096355	None:intergenic	35.0%
ATATTGAGTGTGTGTGATAG+TGG	+	chr4_3:10096337-10096356	None:intergenic	35.0%
CAACACTAAAACTGATGACA+TGG	+	chr4_3:10096589-10096608	None:intergenic	35.0%
TCCTTCGGAAAATACTAAAG+AGG	-	chr4_3:10096718-10096737	Msa0629220:CDS	35.0%
ATCATCCGACCAATTATGCT+CGG	-	chr4_3:10096355-10096374	Msa0629220:CDS	40.0%
ATCAAGAGTTGTAACCTCGT+TGG	-	chr4_3:10096464-10096483	Msa0629220:CDS	40.0%
TTGCTGTGTAATGTTCTCTG+CGG	+	chr4_3:10096801-10096820	None:intergenic	40.0%
AGGAGAAGTGAAGACTTTGG+TGG	+	chr4_3:10096200-10096219	None:intergenic	45.0%
TGGAGGAGAAGTGAAGACTT+TGG	+	chr4_3:10096203-10096222	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	10096185	10096841	10096185	ID=Msa0629220;Name=Msa0629220
chr4_3	mRNA	10096185	10096841	10096185	ID=Msa0629220-mRNA-1;Parent=Msa0629220;Name=Msa0629220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|218
chr4_3	exon	10096185	10096841	10096185	ID=Msa0629220-mRNA-1:exon:3054;Parent=Msa0629220-mRNA-1
chr4_3	CDS	10096185	10096841	10096185	ID=Msa0629220-mRNA-1:cds;Parent=Msa0629220-mRNA-1

Gene Sequence

>Msa0629220

ATGCCTCCAAATCCACCAAAGTCTTCACTTCTCCTCCACAGGATCAACCACACCACCACTACGACCATCACCAACCACCACGACCTCCACTGCGAAAACAACACCCTCTTCGTCAACCCTGTCACCAACACCATTCCTAATACTATAGCCCACTATCACACACACTCAATATCATCCGACCAATTATGCTCGGCGGTCGTCCAAGAGACAACCGCCTCCATCACCGCCGTTTGGTCAGTGGTTCGCCGCTTCGACAAACCACAAGCCTACAAAAATTTCATCAAGAGTTGTAACCTCGTTGGTGGCGACGGTGATGTGGGCACACTCAGGGAGGTCAACCTTATATCTGGCCTCCCTGCTGCACGCAGCACCGAACGCCTTGAGATCCTCGATGAGGATCGCCATGTCATCAGTTTTAGTGTTGTTGGTGGTGATCACAAGCTTGCTAACTACCGTTCCGTTACTACACTTCATCCCTCCACAGAGGGTGACTGTTCCGGCACGGTGATAGTTGAGTCCTATGTGGTGGATATTCCTTCGGAAAATACTAAAGAGGACACACATGTGTTTGTTGATACAATTGTTCGGTGTAACCTTCAGTCACTTGCACAAACCGCAGAGAACATTACACAGCAAAACAACAAGAGTTGTTCCTGA

Protein sequence

>Msa0629220

MPPNPPKSSLLLHRINHTTTTTITNHHDLHCENNTLFVNPVTNTIPNTIAHYHTHSISSDQLCSAVVQETTASITAVWSVVRRFDKPQAYKNFIKSCNLVGGDGDVGTLREVNLISGLPAARSTERLEILDEDRHVISFSVVGGDHKLANYRSVTTLHPSTEGDCSGTVIVESYVVDIPSENTKEDTHVFVDTIVRCNLQSLAQTAENITQQNNKSCS*