Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153000 | XP_003623366.1 | 96.815 | 157 | 3 | 1 | 1 | 155 | 1 | 157 | 1.83e-106 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153000 | sp|O80920|PYL4_ARATH | 74.675 | 154 | 28 | 3 | 5 | 155 | 31 | 176 | 1.08e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153000 | G7KT83 | 96.815 | 157 | 3 | 1 | 1 | 155 | 1 | 157 | 8.76e-107 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629220 | Msa1153000 | 0.806697 | 7.252051e-50 | -8.615850e-47 |
| Msa0667010 | Msa1153000 | 0.851510 | 8.468105e-61 | -8.615850e-47 |
| Msa0746980 | Msa1153000 | -0.808618 | 2.834876e-50 | -8.615850e-47 |
| Msa0818440 | Msa1153000 | -0.835269 | 1.850983e-56 | -8.615850e-47 |
| Msa0818550 | Msa1153000 | -0.827011 | 1.980138e-54 | -8.615850e-47 |
| Msa0129360 | Msa1153000 | -0.812456 | 4.202295e-51 | -8.615850e-47 |
| Msa0176040 | Msa1153000 | -0.811906 | 5.537080e-51 | -8.615850e-47 |
| Msa0220960 | Msa1153000 | 0.804055 | 2.595621e-49 | -8.615850e-47 |
| Msa1025270 | Msa1153000 | 0.849961 | 2.310296e-60 | -8.615850e-47 |
| Msa1050140 | Msa1153000 | 0.901406 | 2.767661e-78 | -8.615850e-47 |
| Msa1088460 | Msa1153000 | 0.882139 | 1.338524e-70 | -8.615850e-47 |
| Msa0300310 | Msa1153000 | 0.808660 | 2.777512e-50 | -8.615850e-47 |
| Msa1153000 | Msa1170840 | 0.804383 | 2.218323e-49 | -8.615850e-47 |
| Msa1153000 | Msa1433900 | 0.807842 | 4.148236e-50 | -8.615850e-47 |
| Msa1153000 | Msa1445040 | 0.836401 | 9.562965e-57 | -8.615850e-47 |
| Msa0532210 | Msa1153000 | 0.852524 | 4.363320e-61 | -8.615850e-47 |
| Msa0858910 | Msa1153000 | -0.818913 | 1.529486e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153000 | MtrunA17_Chr7g0243271 | 96.815 | 157 | 3 | 1 | 1 | 155 | 1 | 157 | 1.69e-110 | 312 |
| Msa1153000 | MtrunA17_Chr4g0005501 | 66.242 | 157 | 45 | 4 | 1 | 154 | 36 | 187 | 5.53e-69 | 208 |
| Msa1153000 | MtrunA17_Chr3g0114121 | 64.103 | 156 | 45 | 4 | 4 | 156 | 57 | 204 | 8.10e-64 | 196 |
| Msa1153000 | MtrunA17_Chr5g0437611 | 61.538 | 169 | 52 | 6 | 4 | 167 | 37 | 197 | 1.11e-61 | 189 |
| Msa1153000 | MtrunA17_Chr5g0411391 | 57.143 | 154 | 60 | 4 | 13 | 162 | 44 | 195 | 1.00e-50 | 162 |
| Msa1153000 | MtrunA17_Chr8g0347191 | 54.110 | 146 | 59 | 4 | 13 | 156 | 73 | 212 | 3.34e-50 | 161 |
| Msa1153000 | MtrunA17_Chr3g0126471 | 52.941 | 153 | 64 | 4 | 6 | 156 | 14 | 160 | 4.75e-50 | 159 |
| Msa1153000 | MtrunA17_Chr1g0158871 | 54.730 | 148 | 59 | 4 | 11 | 156 | 17 | 158 | 7.60e-50 | 159 |
| Msa1153000 | MtrunA17_Chr1g0151661 | 54.167 | 144 | 59 | 4 | 13 | 154 | 39 | 177 | 1.16e-49 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153000 | AT2G38310.1 | 74.675 | 154 | 28 | 3 | 5 | 155 | 31 | 176 | 1.10e-69 | 210 |
| Msa1153000 | AT2G40330.1 | 61.146 | 157 | 55 | 3 | 2 | 155 | 37 | 190 | 1.32e-64 | 197 |
| Msa1153000 | AT5G05440.1 | 63.758 | 149 | 43 | 4 | 9 | 154 | 41 | 181 | 8.33e-62 | 190 |
| Msa1153000 | AT1G01360.1 | 53.846 | 143 | 58 | 3 | 16 | 156 | 24 | 160 | 1.93e-50 | 160 |
| Msa1153000 | AT5G53160.2 | 50.955 | 157 | 68 | 4 | 2 | 156 | 9 | 158 | 3.59e-50 | 160 |
| Msa1153000 | AT2G26040.1 | 53.289 | 152 | 60 | 3 | 8 | 154 | 17 | 162 | 2.02e-49 | 158 |
| Msa1153000 | AT4G01026.1 | 54.930 | 142 | 56 | 4 | 17 | 156 | 27 | 162 | 1.99e-48 | 156 |
| Msa1153000 | AT4G17870.1 | 49.398 | 166 | 75 | 4 | 1 | 162 | 5 | 165 | 6.99e-48 | 154 |
| Msa1153000 | AT4G27920.1 | 48.649 | 148 | 69 | 3 | 11 | 156 | 12 | 154 | 3.38e-45 | 147 |
| Msa1153000 | AT1G73000.1 | 48.026 | 152 | 71 | 4 | 11 | 154 | 34 | 185 | 6.13e-44 | 145 |
| Msa1153000 | AT5G46790.2 | 53.642 | 151 | 65 | 3 | 7 | 154 | 38 | 186 | 9.63e-39 | 132 |
| Msa1153000 | AT5G46790.1 | 53.642 | 151 | 65 | 3 | 7 | 154 | 38 | 186 | 9.63e-39 | 132 |
| Msa1153000 | AT5G45860.1 | 53.521 | 142 | 51 | 3 | 15 | 154 | 6 | 134 | 4.94e-38 | 128 |
| Msa1153000 | AT5G45870.1 | 52.632 | 133 | 54 | 2 | 26 | 156 | 10 | 135 | 1.39e-34 | 119 |
| Msa1153000 | AT5G53160.1 | 50.893 | 112 | 51 | 3 | 2 | 111 | 9 | 118 | 1.15e-32 | 114 |
| Msa1153000 | AT4G18620.1 | 49.645 | 141 | 58 | 3 | 24 | 156 | 7 | 142 | 7.74e-29 | 105 |
Find 69 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTAGCGGGCGATGGCGTC+GGG | 0.286221 | 7_4:-39096284 | None:intergenic |
| GGGACGGTGGTTGTTGGGTT+TGG | 0.316747 | 7_4:-39096263 | None:intergenic |
| TTAGTGAAACAATATTAAAA+AGG | 0.329127 | 7_4:-39097014 | None:intergenic |
| GTGGTAGCGGGCGATGGCGT+CGG | 0.350975 | 7_4:-39096285 | None:intergenic |
| GCGTCGGGGACGGTGGTTGT+TGG | 0.355449 | 7_4:-39096269 | None:intergenic |
| ACGGCGGAGCAACACTGGTT+GGG | 0.355563 | 7_4:-39096323 | None:intergenic |
| GTATCTTCAGTGGTGTTTCC+AGG | 0.355878 | 7_4:-39096701 | None:intergenic |
| CGTCGGGGACGGTGGTTGTT+GGG | 0.383221 | 7_4:-39096268 | None:intergenic |
| TCTTCGTCGGAGATCGGACT+AGG | 0.424642 | 7_4:-39096623 | None:intergenic |
| GACTGCGTGGGTGTGGTAGC+GGG | 0.430031 | 7_4:-39096297 | None:intergenic |
| AGACTGCGTGGGTGTGGTAG+CGG | 0.434046 | 7_4:-39096298 | None:intergenic |
| GCTGACAGCGGCGGGGAGGC+CGG | 0.435041 | 7_4:-39096495 | None:intergenic |
| GCGGGCGATGGCGTCGGGGA+CGG | 0.442801 | 7_4:-39096279 | None:intergenic |
| CGTTCGGTGCTGACAGCGGC+GGG | 0.446228 | 7_4:-39096503 | None:intergenic |
| CGGCGGAGCAACACTGGTTG+GGG | 0.450760 | 7_4:-39096322 | None:intergenic |
| GTGGGTGTGGTAGCGGGCGA+TGG | 0.478652 | 7_4:-39096291 | None:intergenic |
| GTCTAGGACTTCGAGACGTT+CGG | 0.489158 | 7_4:-39096519 | None:intergenic |
| CGTGAAGTCCGTGTCATCTC+CGG | 0.492295 | 7_4:+39096476 | Msa1153000:intron |
| CCGCACCCGTCTCCACCGTC+TGG | 0.503156 | 7_4:+39096360 | Msa1153000:CDS |
| GGCGATGGCGTCGGGGACGG+TGG | 0.507167 | 7_4:-39096276 | None:intergenic |
| TACGTTGTTGATGTTCCACC+TGG | 0.511693 | 7_4:+39096683 | Msa1153000:CDS |
| TTCACGAGAAAATGAAACTA+GGG | 0.513538 | 7_4:+39097103 | Msa1153000:three_prime_UTR |
| ACTAAAGTGAAAATGAAACT+AGG | 0.515373 | 7_4:+39097032 | Msa1153000:three_prime_UTR |
| TTTCACGAGAAAATGAAACT+AGG | 0.517366 | 7_4:+39097102 | Msa1153000:three_prime_UTR |
| GACGGCGGAGCAACACTGGT+TGG | 0.519929 | 7_4:-39096324 | None:intergenic |
| GTCATCAGCTTCAGCATGGT+CGG | 0.522748 | 7_4:+39096554 | Msa1153000:CDS |
| AGTCCGATCTCCGACGAAGA+TGG | 0.524898 | 7_4:+39096626 | Msa1153000:CDS |
| ACGAAGTGTTTGTAGGCTTG+TGG | 0.526533 | 7_4:-39096407 | None:intergenic |
| TACGGACCAGACGGTGGAGA+CGG | 0.531050 | 7_4:-39096366 | None:intergenic |
| TTGCCATCTTCGTCGGAGAT+CGG | 0.532468 | 7_4:-39096629 | None:intergenic |
| GAAGATGGCAACCACCGCTC+CGG | 0.541680 | 7_4:+39096641 | Msa1153000:CDS |
| CTAAAGTGAAAATGAAACTA+GGG | 0.543939 | 7_4:+39097033 | Msa1153000:three_prime_UTR |
| TGCCGTCACCGAGGATTACA+TGG | 0.548078 | 7_4:-39096439 | None:intergenic |
| ACGGACCAGACGGTGGAGAC+GGG | 0.550345 | 7_4:-39096365 | None:intergenic |
| TGACATGACGTTCATCGTCT+AGG | 0.555135 | 7_4:-39096535 | None:intergenic |
| CGGGGAGGCCGGAGATGACA+CGG | 0.556039 | 7_4:-39096484 | None:intergenic |
| TGCGGCGATTTGTTGGATGA+CGG | 0.556569 | 7_4:-39096342 | None:intergenic |
| ATTGTCGAAGCGACGGACTA+CGG | 0.565639 | 7_4:-39096384 | None:intergenic |
| CAACCACCGTGCCGGAGCGG+TGG | 0.569837 | 7_4:-39096652 | None:intergenic |
| ACGTTCGGTGCTGACAGCGG+CGG | 0.570809 | 7_4:-39096504 | None:intergenic |
| TGCCATGTAATCCTCGGTGA+CGG | 0.575327 | 7_4:+39096437 | Msa1153000:CDS |
| CGGTGCTGACAGCGGCGGGG+AGG | 0.581007 | 7_4:-39096499 | None:intergenic |
| GGATTCAACAACCACCGTGC+CGG | 0.581765 | 7_4:-39096660 | None:intergenic |
| GCGGTGGTTGCCATCTTCGT+CGG | 0.582833 | 7_4:-39096636 | None:intergenic |
| AAAAGCTGCCATGTAATCCT+CGG | 0.586229 | 7_4:+39096431 | Msa1153000:CDS |
| GGATGACGGCGGAGCAACAC+TGG | 0.592996 | 7_4:-39096328 | None:intergenic |
| CTTCGTCGGAGATCGGACTA+GGG | 0.595738 | 7_4:-39096622 | None:intergenic |
| CCAGACGGTGGAGACGGGTG+CGG | 0.600624 | 7_4:-39096360 | None:intergenic |
| TCTTCAGTGGTGTTTCCAGG+TGG | 0.600688 | 7_4:-39096698 | None:intergenic |
| TGGCAACCACCGCTCCGGCA+CGG | 0.610622 | 7_4:+39096646 | Msa1153000:CDS |
| GGTGAAGAGTGGTGACAGAA+CGG | 0.622514 | 7_4:-39096601 | None:intergenic |
| GCGACGGACTACGGACCAGA+CGG | 0.625454 | 7_4:-39096375 | None:intergenic |
| AAACACACATGTATCTTCAG+TGG | 0.628787 | 7_4:-39096711 | None:intergenic |
| CAACCACCGCTCCGGCACGG+TGG | 0.633877 | 7_4:+39096649 | Msa1153000:CDS |
| CAACAACCACCGTGCCGGAG+CGG | 0.635412 | 7_4:-39096655 | None:intergenic |
| GGTAGCGGGCGATGGCGTCG+GGG | 0.638452 | 7_4:-39096283 | None:intergenic |
| GGCGGAGCAACACTGGTTGG+GGG | 0.641966 | 7_4:-39096321 | None:intergenic |
| ACGGACTACGGACCAGACGG+TGG | 0.644893 | 7_4:-39096372 | None:intergenic |
| ATCAGCTTCAGCATGGTCGG+CGG | 0.648676 | 7_4:+39096557 | Msa1153000:CDS |
| GAGACGTTCGGTGCTGACAG+CGG | 0.650293 | 7_4:-39096507 | None:intergenic |
| ATCCTCGGTGACGGCAACGT+CGG | 0.652459 | 7_4:+39096446 | Msa1153000:CDS |
| TCATGTCATCAGCTTCAGCA+TGG | 0.652866 | 7_4:+39096550 | Msa1153000:CDS |
| GTTCGGTGCTGACAGCGGCG+GGG | 0.655778 | 7_4:-39096502 | None:intergenic |
| GATCGGACTAGGGTGAAGAG+TGG | 0.660402 | 7_4:-39096612 | None:intergenic |
| CTTGTGGATTGTCGAAGCGA+CGG | 0.660521 | 7_4:-39096391 | None:intergenic |
| GGCGATTTGTTGGATGACGG+CGG | 0.674940 | 7_4:-39096339 | None:intergenic |
| TGCCGACGTTGCCGTCACCG+AGG | 0.697315 | 7_4:-39096448 | None:intergenic |
| AGGTGGAACATCAACAACGT+AGG | 0.714920 | 7_4:-39096681 | None:intergenic |
| CAGAACGGTAGTTAGCAAGA+CGG | 0.719529 | 7_4:-39096586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_4:39097017-39097036 | None:intergenic | 15.0% |
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_4:39097017-39097036 | None:intergenic | 15.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_4:39096729-39096748 | Msa1153000:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_4:39097003-39097022 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_4:39097032-39097051 | Msa1153000:three_prime_UTR | 25.0% |
| ! | CTAAAGTGAAAATGAAACTA+GGG | + | chr7_4:39097033-39097052 | Msa1153000:three_prime_UTR | 25.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_4:39096729-39096748 | Msa1153000:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_4:39097003-39097022 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_4:39097032-39097051 | Msa1153000:three_prime_UTR | 25.0% |
| ! | CTAAAGTGAAAATGAAACTA+GGG | + | chr7_4:39097033-39097052 | Msa1153000:three_prime_UTR | 25.0% |
| TTTCACGAGAAAATGAAACT+AGG | + | chr7_4:39097102-39097121 | Msa1153000:three_prime_UTR | 30.0% | |
| AAACACACATGTATCTTCAG+TGG | - | chr7_4:39096714-39096733 | None:intergenic | 35.0% | |
| AAACACACATGTATCTTCAG+TGG | - | chr7_4:39096714-39096733 | None:intergenic | 35.0% | |
| !! | GCTTTTGACGAAGTGTTTGT+AGG | - | chr7_4:39096417-39096436 | None:intergenic | 40.0% |
| AAAAGCTGCCATGTAATCCT+CGG | + | chr7_4:39096431-39096450 | Msa1153000:CDS | 40.0% | |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_4:39096760-39096779 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_4:39096769-39096788 | Msa1153000:intron | 40.0% |
| !! | GCTTTTGACGAAGTGTTTGT+AGG | - | chr7_4:39096417-39096436 | None:intergenic | 40.0% |
| AAAAGCTGCCATGTAATCCT+CGG | + | chr7_4:39096431-39096450 | Msa1153000:CDS | 40.0% | |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_4:39096760-39096779 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_4:39096769-39096788 | Msa1153000:intron | 40.0% |
| ! | ACGAAGTGTTTGTAGGCTTG+TGG | - | chr7_4:39096410-39096429 | None:intergenic | 45.0% |
| TGACATGACGTTCATCGTCT+AGG | - | chr7_4:39096538-39096557 | None:intergenic | 45.0% | |
| TCATGTCATCAGCTTCAGCA+TGG | + | chr7_4:39096550-39096569 | Msa1153000:CDS | 45.0% | |
| CAGAACGGTAGTTAGCAAGA+CGG | - | chr7_4:39096589-39096608 | None:intergenic | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_4:39096684-39096703 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_4:39096683-39096702 | Msa1153000:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_4:39096704-39096723 | None:intergenic | 45.0% | |
| ! | ACGAAGTGTTTGTAGGCTTG+TGG | - | chr7_4:39096410-39096429 | None:intergenic | 45.0% |
| TGACATGACGTTCATCGTCT+AGG | - | chr7_4:39096538-39096557 | None:intergenic | 45.0% | |
| TCATGTCATCAGCTTCAGCA+TGG | + | chr7_4:39096550-39096569 | Msa1153000:CDS | 45.0% | |
| CAGAACGGTAGTTAGCAAGA+CGG | - | chr7_4:39096589-39096608 | None:intergenic | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_4:39096684-39096703 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_4:39096683-39096702 | Msa1153000:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_4:39096704-39096723 | None:intergenic | 45.0% | |
| !! | ATAAAAAAAAAAAATTAAAG+AGG | - | chr7_4:39096839-39096858 | None:intergenic | 5.0% |
| !!! | TTTTTATTTTTATTATTGTT+AGG | + | chr7_4:39096939-39096958 | Msa1153000:intron | 5.0% |
| !! | ATAAAAAAAAAAAATTAAAG+AGG | - | chr7_4:39096839-39096858 | None:intergenic | 5.0% |
| !!! | TTTTTATTTTTATTATTGTT+AGG | + | chr7_4:39096939-39096958 | Msa1153000:intron | 5.0% |
| !! | TGCGGCGATTTGTTGGATGA+CGG | - | chr7_4:39096345-39096364 | None:intergenic | 50.0% |
| !! | ATTGTCGAAGCGACGGACTA+CGG | - | chr7_4:39096387-39096406 | None:intergenic | 50.0% |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_4:39096394-39096413 | None:intergenic | 50.0% |
| TGCCATGTAATCCTCGGTGA+CGG | + | chr7_4:39096437-39096456 | Msa1153000:CDS | 50.0% | |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_4:39096522-39096541 | None:intergenic | 50.0% |
| GTCATCAGCTTCAGCATGGT+CGG | + | chr7_4:39096554-39096573 | Msa1153000:CDS | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_4:39096604-39096623 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_4:39096632-39096651 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_4:39096701-39096720 | None:intergenic | 50.0% | |
| !! | TGCGGCGATTTGTTGGATGA+CGG | - | chr7_4:39096345-39096364 | None:intergenic | 50.0% |
| !! | ATTGTCGAAGCGACGGACTA+CGG | - | chr7_4:39096387-39096406 | None:intergenic | 50.0% |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_4:39096394-39096413 | None:intergenic | 50.0% |
| TGCCATGTAATCCTCGGTGA+CGG | + | chr7_4:39096437-39096456 | Msa1153000:CDS | 50.0% | |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_4:39096522-39096541 | None:intergenic | 50.0% |
| GTCATCAGCTTCAGCATGGT+CGG | + | chr7_4:39096554-39096573 | Msa1153000:CDS | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_4:39096604-39096623 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_4:39096632-39096651 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_4:39096701-39096720 | None:intergenic | 50.0% | |
| !! | GGCGATTTGTTGGATGACGG+CGG | - | chr7_4:39096342-39096361 | None:intergenic | 55.0% |
| TGCCGTCACCGAGGATTACA+TGG | - | chr7_4:39096442-39096461 | None:intergenic | 55.0% | |
| CGGAGATGACACGGACTTCA+CGG | - | chr7_4:39096478-39096497 | None:intergenic | 55.0% | |
| CGTGAAGTCCGTGTCATCTC+CGG | + | chr7_4:39096476-39096495 | Msa1153000:intron | 55.0% | |
| ATCAGCTTCAGCATGGTCGG+CGG | + | chr7_4:39096557-39096576 | Msa1153000:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_4:39096615-39096634 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_4:39096625-39096644 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_4:39096626-39096645 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_4:39096626-39096645 | Msa1153000:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_4:39096663-39096682 | None:intergenic | 55.0% | |
| !! | GGCGATTTGTTGGATGACGG+CGG | - | chr7_4:39096342-39096361 | None:intergenic | 55.0% |
| TGCCGTCACCGAGGATTACA+TGG | - | chr7_4:39096442-39096461 | None:intergenic | 55.0% | |
| CGGAGATGACACGGACTTCA+CGG | - | chr7_4:39096478-39096497 | None:intergenic | 55.0% | |
| CGTGAAGTCCGTGTCATCTC+CGG | + | chr7_4:39096476-39096495 | Msa1153000:intron | 55.0% | |
| ATCAGCTTCAGCATGGTCGG+CGG | + | chr7_4:39096557-39096576 | Msa1153000:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_4:39096615-39096634 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_4:39096625-39096644 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_4:39096626-39096645 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_4:39096626-39096645 | Msa1153000:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_4:39096663-39096682 | None:intergenic | 55.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_4:39096266-39096285 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_4:39096301-39096320 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_4:39096326-39096345 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATTTGT+TGG | - | chr7_4:39096352-39096371 | None:intergenic | 60.0% | |
| TACGGACCAGACGGTGGAGA+CGG | - | chr7_4:39096369-39096388 | None:intergenic | 60.0% | |
| ! | ATCCTCGGTGACGGCAACGT+CGG | + | chr7_4:39096446-39096465 | Msa1153000:CDS | 60.0% |
| !! | GAGACGTTCGGTGCTGACAG+CGG | - | chr7_4:39096510-39096529 | None:intergenic | 60.0% |
| GCGGTGGTTGCCATCTTCGT+CGG | - | chr7_4:39096639-39096658 | None:intergenic | 60.0% | |
| GAAGATGGCAACCACCGCTC+CGG | + | chr7_4:39096641-39096660 | Msa1153000:CDS | 60.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_4:39096266-39096285 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_4:39096301-39096320 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_4:39096326-39096345 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATTTGT+TGG | - | chr7_4:39096352-39096371 | None:intergenic | 60.0% | |
| TACGGACCAGACGGTGGAGA+CGG | - | chr7_4:39096369-39096388 | None:intergenic | 60.0% | |
| ! | ATCCTCGGTGACGGCAACGT+CGG | + | chr7_4:39096446-39096465 | Msa1153000:CDS | 60.0% |
| !! | GAGACGTTCGGTGCTGACAG+CGG | - | chr7_4:39096510-39096529 | None:intergenic | 60.0% |
| GCGGTGGTTGCCATCTTCGT+CGG | - | chr7_4:39096639-39096658 | None:intergenic | 60.0% | |
| GAAGATGGCAACCACCGCTC+CGG | + | chr7_4:39096641-39096660 | Msa1153000:CDS | 60.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_4:39096271-39096290 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_4:39096300-39096319 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_4:39096312-39096331 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_4:39096313-39096332 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_4:39096324-39096343 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_4:39096325-39096344 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_4:39096327-39096346 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_4:39096331-39096350 | None:intergenic | 65.0% |
| ACGGACCAGACGGTGGAGAC+GGG | - | chr7_4:39096368-39096387 | None:intergenic | 65.0% | |
| ! | ACGGACTACGGACCAGACGG+TGG | - | chr7_4:39096375-39096394 | None:intergenic | 65.0% |
| !! | GCGACGGACTACGGACCAGA+CGG | - | chr7_4:39096378-39096397 | None:intergenic | 65.0% |
| !! | ACGTTCGGTGCTGACAGCGG+CGG | - | chr7_4:39096507-39096526 | None:intergenic | 65.0% |
| CAACAACCACCGTGCCGGAG+CGG | - | chr7_4:39096658-39096677 | None:intergenic | 65.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_4:39096271-39096290 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_4:39096300-39096319 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_4:39096312-39096331 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_4:39096313-39096332 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_4:39096324-39096343 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_4:39096325-39096344 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_4:39096327-39096346 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_4:39096331-39096350 | None:intergenic | 65.0% |
| ACGGACCAGACGGTGGAGAC+GGG | - | chr7_4:39096368-39096387 | None:intergenic | 65.0% | |
| ! | ACGGACTACGGACCAGACGG+TGG | - | chr7_4:39096375-39096394 | None:intergenic | 65.0% |
| !! | GCGACGGACTACGGACCAGA+CGG | - | chr7_4:39096378-39096397 | None:intergenic | 65.0% |
| !! | ACGTTCGGTGCTGACAGCGG+CGG | - | chr7_4:39096507-39096526 | None:intergenic | 65.0% |
| CAACAACCACCGTGCCGGAG+CGG | - | chr7_4:39096658-39096677 | None:intergenic | 65.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_4:39096272-39096291 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_4:39096287-39096306 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_4:39096288-39096307 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_4:39096294-39096313 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_4:39096307-39096326 | None:intergenic | 70.0% | |
| CCAGACGGTGGAGACGGGTG+CGG | - | chr7_4:39096363-39096382 | None:intergenic | 70.0% | |
| TGCCGACGTTGCCGTCACCG+AGG | - | chr7_4:39096451-39096470 | None:intergenic | 70.0% | |
| CGGGGAGGCCGGAGATGACA+CGG | - | chr7_4:39096487-39096506 | None:intergenic | 70.0% | |
| !! | GTTCGGTGCTGACAGCGGCG+GGG | - | chr7_4:39096505-39096524 | None:intergenic | 70.0% |
| !! | CGTTCGGTGCTGACAGCGGC+GGG | - | chr7_4:39096506-39096525 | None:intergenic | 70.0% |
| TGGCAACCACCGCTCCGGCA+CGG | + | chr7_4:39096646-39096665 | Msa1153000:CDS | 70.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_4:39096272-39096291 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_4:39096287-39096306 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_4:39096288-39096307 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_4:39096294-39096313 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_4:39096307-39096326 | None:intergenic | 70.0% | |
| CCAGACGGTGGAGACGGGTG+CGG | - | chr7_4:39096363-39096382 | None:intergenic | 70.0% | |
| TGCCGACGTTGCCGTCACCG+AGG | - | chr7_4:39096451-39096470 | None:intergenic | 70.0% | |
| CGGGGAGGCCGGAGATGACA+CGG | - | chr7_4:39096487-39096506 | None:intergenic | 70.0% | |
| !! | GTTCGGTGCTGACAGCGGCG+GGG | - | chr7_4:39096505-39096524 | None:intergenic | 70.0% |
| !! | CGTTCGGTGCTGACAGCGGC+GGG | - | chr7_4:39096506-39096525 | None:intergenic | 70.0% |
| TGGCAACCACCGCTCCGGCA+CGG | + | chr7_4:39096646-39096665 | Msa1153000:CDS | 70.0% | |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_4:39096286-39096305 | None:intergenic | 75.0% |
| CCGCACCCGTCTCCACCGTC+TGG | + | chr7_4:39096360-39096379 | Msa1153000:CDS | 75.0% | |
| CAACCACCGCTCCGGCACGG+TGG | + | chr7_4:39096649-39096668 | Msa1153000:CDS | 75.0% | |
| CAACCACCGTGCCGGAGCGG+TGG | - | chr7_4:39096655-39096674 | None:intergenic | 75.0% | |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_4:39096286-39096305 | None:intergenic | 75.0% |
| CCGCACCCGTCTCCACCGTC+TGG | + | chr7_4:39096360-39096379 | Msa1153000:CDS | 75.0% | |
| CAACCACCGCTCCGGCACGG+TGG | + | chr7_4:39096649-39096668 | Msa1153000:CDS | 75.0% | |
| CAACCACCGTGCCGGAGCGG+TGG | - | chr7_4:39096655-39096674 | None:intergenic | 75.0% | |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_4:39096279-39096298 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_4:39096282-39096301 | None:intergenic | 80.0% |
| ! | GCTGACAGCGGCGGGGAGGC+CGG | - | chr7_4:39096498-39096517 | None:intergenic | 80.0% |
| !!! | CGGTGCTGACAGCGGCGGGG+AGG | - | chr7_4:39096502-39096521 | None:intergenic | 80.0% |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_4:39096279-39096298 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_4:39096282-39096301 | None:intergenic | 80.0% |
| ! | GCTGACAGCGGCGGGGAGGC+CGG | - | chr7_4:39096498-39096517 | None:intergenic | 80.0% |
| !!! | CGGTGCTGACAGCGGCGGGG+AGG | - | chr7_4:39096502-39096521 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 39096257 | 39097124 | 39096257 | ID=Msa1153000;Name=Msa1153000 |
| chr7_4 | mRNA | 39096257 | 39097124 | 39096257 | ID=Msa1153000-mRNA-1;Parent=Msa1153000;Name=Msa1153000-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0.33|1|0|0|3|102|174 |
| chr7_4 | exon | 39096257 | 39096476 | 39096257 | ID=Msa1153000-mRNA-1:exon:9477;Parent=Msa1153000-mRNA-1 |
| chr7_4 | exon | 39096483 | 39096725 | 39096483 | ID=Msa1153000-mRNA-1:exon:9478;Parent=Msa1153000-mRNA-1 |
| chr7_4 | exon | 39096961 | 39097124 | 39096961 | ID=Msa1153000-mRNA-1:exon:9479;Parent=Msa1153000-mRNA-1 |
| chr7_4 | CDS | 39096257 | 39096476 | 39096257 | ID=Msa1153000-mRNA-1:cds;Parent=Msa1153000-mRNA-1 |
| chr7_4 | CDS | 39096483 | 39096725 | 39096483 | ID=Msa1153000-mRNA-1:cds;Parent=Msa1153000-mRNA-1 |
| chr7_4 | CDS | 39096961 | 39097022 | 39096961 | ID=Msa1153000-mRNA-1:cds;Parent=Msa1153000-mRNA-1 |
| chr7_4 | three_prime_UTR | 39097023 | 39097124 | 39097023 | ID=Msa1153000-mRNA-1:three_prime_utr;Parent=Msa1153000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
