Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088460 | XP_003623366.1 | 96.815 | 157 | 3 | 1 | 1 | 155 | 1 | 157 | 8.90e-106 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088460 | sp|O80920|PYL4_ARATH | 73.377 | 154 | 30 | 3 | 5 | 155 | 31 | 176 | 1.72e-67 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088460 | G7KT83 | 96.815 | 157 | 3 | 1 | 1 | 155 | 1 | 157 | 4.25e-106 | 310 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629220 | Msa1088460 | 0.836619 | 8.414160e-57 | -8.615850e-47 |
| Msa0667010 | Msa1088460 | 0.840235 | 9.823990e-58 | -8.615850e-47 |
| Msa0220960 | Msa1088460 | 0.822198 | 2.692375e-53 | -8.615850e-47 |
| Msa1025270 | Msa1088460 | 0.895790 | 6.856676e-76 | -8.615850e-47 |
| Msa1050140 | Msa1088460 | 0.896420 | 3.754568e-76 | -8.615850e-47 |
| Msa1088460 | Msa1153000 | 0.882139 | 1.338524e-70 | -8.615850e-47 |
| Msa1088460 | Msa1170840 | 0.835103 | 2.038283e-56 | -8.615850e-47 |
| Msa1088460 | Msa1433900 | 0.820279 | 7.459563e-53 | -8.615850e-47 |
| Msa1088460 | Msa1445040 | 0.841168 | 5.595970e-58 | -8.615850e-47 |
| Msa0300310 | Msa1088460 | 0.811671 | 6.231486e-51 | -8.615850e-47 |
| Msa0337740 | Msa1088460 | 0.849590 | 2.932098e-60 | -8.615850e-47 |
| Msa0532210 | Msa1088460 | 0.839599 | 1.438887e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088460 | MtrunA17_Chr7g0243271 | 96.815 | 157 | 3 | 1 | 1 | 155 | 1 | 157 | 8.19e-110 | 310 |
| Msa1088460 | MtrunA17_Chr4g0005501 | 66.242 | 157 | 45 | 4 | 1 | 154 | 36 | 187 | 2.17e-69 | 209 |
| Msa1088460 | MtrunA17_Chr3g0114121 | 64.103 | 156 | 45 | 4 | 4 | 156 | 57 | 204 | 1.52e-64 | 197 |
| Msa1088460 | MtrunA17_Chr5g0437611 | 63.462 | 156 | 45 | 5 | 4 | 155 | 37 | 184 | 3.58e-60 | 185 |
| Msa1088460 | MtrunA17_Chr3g0126471 | 54.248 | 153 | 62 | 4 | 6 | 156 | 14 | 160 | 1.24e-51 | 163 |
| Msa1088460 | MtrunA17_Chr1g0158871 | 56.081 | 148 | 57 | 4 | 11 | 156 | 17 | 158 | 1.84e-51 | 162 |
| Msa1088460 | MtrunA17_Chr8g0347191 | 54.110 | 146 | 59 | 4 | 13 | 156 | 73 | 212 | 2.45e-51 | 164 |
| Msa1088460 | MtrunA17_Chr5g0411391 | 58.621 | 145 | 55 | 3 | 13 | 154 | 44 | 186 | 7.01e-50 | 159 |
| Msa1088460 | MtrunA17_Chr1g0151661 | 52.778 | 144 | 61 | 4 | 13 | 154 | 39 | 177 | 4.25e-48 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1088460 | AT2G38310.1 | 73.377 | 154 | 30 | 3 | 5 | 155 | 31 | 176 | 1.75e-68 | 206 |
| Msa1088460 | AT2G40330.1 | 63.333 | 150 | 49 | 4 | 9 | 155 | 44 | 190 | 5.59e-64 | 195 |
| Msa1088460 | AT5G05440.1 | 63.758 | 149 | 43 | 4 | 9 | 154 | 41 | 181 | 1.89e-62 | 191 |
| Msa1088460 | AT1G01360.1 | 55.245 | 143 | 56 | 3 | 16 | 156 | 24 | 160 | 2.77e-52 | 165 |
| Msa1088460 | AT5G53160.2 | 50.955 | 157 | 68 | 4 | 2 | 156 | 9 | 158 | 2.15e-51 | 162 |
| Msa1088460 | AT4G01026.1 | 55.634 | 142 | 55 | 4 | 17 | 156 | 27 | 162 | 1.64e-49 | 158 |
| Msa1088460 | AT2G26040.1 | 52.632 | 152 | 61 | 3 | 8 | 154 | 17 | 162 | 5.31e-49 | 156 |
| Msa1088460 | AT4G17870.1 | 50.318 | 157 | 70 | 3 | 1 | 154 | 5 | 156 | 5.66e-47 | 151 |
| Msa1088460 | AT4G27920.1 | 48.649 | 148 | 69 | 3 | 11 | 156 | 12 | 154 | 1.23e-46 | 150 |
| Msa1088460 | AT1G73000.1 | 47.368 | 152 | 72 | 4 | 11 | 154 | 34 | 185 | 2.89e-43 | 142 |
| Msa1088460 | AT5G45860.1 | 54.225 | 142 | 50 | 3 | 15 | 154 | 6 | 134 | 2.50e-38 | 128 |
| Msa1088460 | AT5G46790.2 | 52.980 | 151 | 66 | 3 | 7 | 154 | 38 | 186 | 1.36e-37 | 128 |
| Msa1088460 | AT5G46790.1 | 52.980 | 151 | 66 | 3 | 7 | 154 | 38 | 186 | 1.36e-37 | 128 |
| Msa1088460 | AT5G45870.1 | 53.435 | 131 | 52 | 2 | 26 | 154 | 10 | 133 | 4.50e-34 | 117 |
| Msa1088460 | AT5G53160.1 | 50.893 | 112 | 51 | 3 | 2 | 111 | 9 | 118 | 6.71e-34 | 117 |
| Msa1088460 | AT4G18620.1 | 50.355 | 141 | 57 | 3 | 24 | 156 | 7 | 142 | 1.90e-29 | 106 |
Find 67 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTAGCGGGCGATGGCGTC+GGG | 0.286221 | 7_3:-1624932 | None:intergenic |
| GGGACGGTGGTTGTTGGGTT+TGG | 0.316747 | 7_3:-1624911 | None:intergenic |
| TTAGTGAAACAATATTAAAA+AGG | 0.329127 | 7_3:-1625667 | None:intergenic |
| GTGGTAGCGGGCGATGGCGT+CGG | 0.350975 | 7_3:-1624933 | None:intergenic |
| GCGTCGGGGACGGTGGTTGT+TGG | 0.355449 | 7_3:-1624917 | None:intergenic |
| ACGGCGGAGCAACACTGGTT+GGG | 0.355563 | 7_3:-1624971 | None:intergenic |
| GTATCTTCAGTGGTGTTTCC+AGG | 0.355878 | 7_3:-1625349 | None:intergenic |
| CGTCGGGGACGGTGGTTGTT+GGG | 0.383221 | 7_3:-1624916 | None:intergenic |
| GTCATCAGCTTCAGCATGAT+TGG | 0.416594 | 7_3:+1625202 | Msa1088460:CDS |
| CGTTCGGTGCTGACGGCGGC+GGG | 0.423682 | 7_3:-1625151 | None:intergenic |
| TCTTCGTCGGAGATCGGACT+AGG | 0.424642 | 7_3:-1625271 | None:intergenic |
| GACTGCGTGGGTGTGGTAGC+GGG | 0.430031 | 7_3:-1624945 | None:intergenic |
| AGACTGCGTGGGTGTGGTAG+CGG | 0.434046 | 7_3:-1624946 | None:intergenic |
| ACGTTCGGTGCTGACGGCGG+CGG | 0.440590 | 7_3:-1625152 | None:intergenic |
| GCGGGCGATGGCGTCGGGGA+CGG | 0.442801 | 7_3:-1624927 | None:intergenic |
| GCTGACGGCGGCGGGGAGGC+CGG | 0.449916 | 7_3:-1625143 | None:intergenic |
| CGGCGGAGCAACACTGGTTG+GGG | 0.450760 | 7_3:-1624970 | None:intergenic |
| GCATGATTGGCGGTGATCAC+CGG | 0.466189 | 7_3:+1625215 | Msa1088460:CDS |
| CGTGAAGTCCGCGTCATCTC+CGG | 0.470592 | 7_3:+1625124 | Msa1088460:intron |
| GTGGGTGTGGTAGCGGGCGA+TGG | 0.478652 | 7_3:-1624939 | None:intergenic |
| GTCTAGGACTTCGAGACGTT+CGG | 0.489158 | 7_3:-1625167 | None:intergenic |
| CCGCACCCGTCTCCACCGTC+TGG | 0.503156 | 7_3:+1625008 | Msa1088460:CDS |
| GGCGATGGCGTCGGGGACGG+TGG | 0.507167 | 7_3:-1624924 | None:intergenic |
| AACGGACCAGACGGTGGAGA+CGG | 0.510351 | 7_3:-1625014 | None:intergenic |
| TACGTTGTTGATGTTCCACC+TGG | 0.511693 | 7_3:+1625331 | Msa1088460:CDS |
| TTCACGAGAAAATGAAACTA+GGG | 0.513538 | 7_3:+1625756 | Msa1088460:three_prime_UTR |
| ACTAAAGTGAAAATGAAACT+AGG | 0.515373 | 7_3:+1625685 | Msa1088460:three_prime_UTR |
| TTTCACGAGAAAATGAAACT+AGG | 0.517366 | 7_3:+1625755 | Msa1088460:three_prime_UTR |
| GACGGCGGAGCAACACTGGT+TGG | 0.519929 | 7_3:-1624972 | None:intergenic |
| ACGGACCAGACGGTGGAGAC+GGG | 0.521318 | 7_3:-1625013 | None:intergenic |
| TTGCCATCTTCGTCGGAGAT+CGG | 0.523840 | 7_3:-1625277 | None:intergenic |
| AGTCCGATCTCCGACGAAGA+TGG | 0.524898 | 7_3:+1625274 | Msa1088460:CDS |
| TTCGAGACGTTCGGTGCTGA+CGG | 0.530715 | 7_3:-1625158 | None:intergenic |
| TGCCATGTCATCCTCGGCGA+CGG | 0.538063 | 7_3:+1625085 | Msa1088460:CDS |
| CGGGGAGGCCGGAGATGACG+CGG | 0.540759 | 7_3:-1625132 | None:intergenic |
| CTAAAGTGAAAATGAAACTA+GGG | 0.543939 | 7_3:+1625686 | Msa1088460:three_prime_UTR |
| CGGTGCTGACGGCGGCGGGG+AGG | 0.548394 | 7_3:-1625147 | None:intergenic |
| GTTCGGTGCTGACGGCGGCG+GGG | 0.549616 | 7_3:-1625150 | None:intergenic |
| GCGTTGGTTGCCATCTTCGT+CGG | 0.552270 | 7_3:-1625284 | None:intergenic |
| CAACCACCGTGCCGGAGCGT+TGG | 0.554675 | 7_3:-1625300 | None:intergenic |
| GAAGATGGCAACCAACGCTC+CGG | 0.557103 | 7_3:+1625289 | Msa1088460:CDS |
| ATCCTCGGCGACGGCAACGT+CGG | 0.566845 | 7_3:+1625094 | Msa1088460:CDS |
| TGACGTGACGTTCATCGTCT+AGG | 0.571433 | 7_3:-1625183 | None:intergenic |
| AAAAGCTGCCATGTCATCCT+CGG | 0.573277 | 7_3:+1625079 | Msa1088460:CDS |
| ATCAGCTTCAGCATGATTGG+CGG | 0.579196 | 7_3:+1625205 | Msa1088460:CDS |
| GGATTCAACAACCACCGTGC+CGG | 0.581765 | 7_3:-1625308 | None:intergenic |
| TGCCGTCGCCGAGGATGACA+TGG | 0.583389 | 7_3:-1625087 | None:intergenic |
| TGCCGACGTTGCCGTCGCCG+AGG | 0.587984 | 7_3:-1625096 | None:intergenic |
| GGATGACGGCGGAGCAACAC+TGG | 0.592996 | 7_3:-1624976 | None:intergenic |
| CTTCGTCGGAGATCGGACTA+GGG | 0.595738 | 7_3:-1625270 | None:intergenic |
| CCAGACGGTGGAGACGGGTG+CGG | 0.600624 | 7_3:-1625008 | None:intergenic |
| TCTTCAGTGGTGTTTCCAGG+TGG | 0.600688 | 7_3:-1625346 | None:intergenic |
| TGCGGCGATATGTTGGATGA+CGG | 0.601558 | 7_3:-1624990 | None:intergenic |
| ACGGACAACGGACCAGACGG+TGG | 0.603928 | 7_3:-1625020 | None:intergenic |
| GCGACGGACAACGGACCAGA+CGG | 0.611981 | 7_3:-1625023 | None:intergenic |
| GGTGAAGAGTGGTGACAGAA+CGG | 0.622514 | 7_3:-1625249 | None:intergenic |
| ATTGTCGAAGCGACGGACAA+CGG | 0.628400 | 7_3:-1625032 | None:intergenic |
| AAACACACATGTATCTTCAG+TGG | 0.628787 | 7_3:-1625359 | None:intergenic |
| GGTAGCGGGCGATGGCGTCG+GGG | 0.638452 | 7_3:-1624931 | None:intergenic |
| GGCGGAGCAACACTGGTTGG+GGG | 0.641966 | 7_3:-1624969 | None:intergenic |
| GAGACGTTCGGTGCTGACGG+CGG | 0.644895 | 7_3:-1625155 | None:intergenic |
| CAGAACGGTAGTTAGCAAGC+CGG | 0.656130 | 7_3:-1625234 | None:intergenic |
| GATCGGACTAGGGTGAAGAG+TGG | 0.660402 | 7_3:-1625260 | None:intergenic |
| CTTGTGGATTGTCGAAGCGA+CGG | 0.665023 | 7_3:-1625039 | None:intergenic |
| CAACCAACGCTCCGGCACGG+TGG | 0.673035 | 7_3:+1625297 | Msa1088460:CDS |
| GGCGATATGTTGGATGACGG+CGG | 0.710240 | 7_3:-1624987 | None:intergenic |
| AGGTGGAACATCAACAACGT+AGG | 0.714920 | 7_3:-1625329 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAAAAAAAAAAAAACAA+AGG | - | chr7_3:1625489-1625508 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGTTTTTAACTT+CGG | + | chr7_3:1625499-1625518 | Msa1088460:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAAACAA+AGG | - | chr7_3:1625489-1625508 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGTTTTTAACTT+CGG | + | chr7_3:1625499-1625518 | Msa1088460:intron | 10.0% |
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_3:1625670-1625689 | None:intergenic | 15.0% |
| !! | TTAGTGAAACAATATTAAAA+AGG | - | chr7_3:1625670-1625689 | None:intergenic | 15.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_3:1625377-1625396 | Msa1088460:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_3:1625656-1625675 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_3:1625685-1625704 | Msa1088460:three_prime_UTR | 25.0% |
| ! | CTAAAGTGAAAATGAAACTA+GGG | + | chr7_3:1625686-1625705 | Msa1088460:three_prime_UTR | 25.0% |
| !! | TGTTTGTTGATACTATTCTT+CGG | + | chr7_3:1625377-1625396 | Msa1088460:intron | 25.0% |
| ! | TTAAAAAGGATCACATAACT+TGG | - | chr7_3:1625656-1625675 | None:intergenic | 25.0% |
| ! | ACTAAAGTGAAAATGAAACT+AGG | + | chr7_3:1625685-1625704 | Msa1088460:three_prime_UTR | 25.0% |
| ! | CTAAAGTGAAAATGAAACTA+GGG | + | chr7_3:1625686-1625705 | Msa1088460:three_prime_UTR | 25.0% |
| TTTCACGAGAAAATGAAACT+AGG | + | chr7_3:1625755-1625774 | Msa1088460:three_prime_UTR | 30.0% | |
| ! | GCTTTTGACGAAGTTTTTGT+AGG | - | chr7_3:1625065-1625084 | None:intergenic | 35.0% |
| AAACACACATGTATCTTCAG+TGG | - | chr7_3:1625362-1625381 | None:intergenic | 35.0% | |
| ! | GCTTTTGACGAAGTTTTTGT+AGG | - | chr7_3:1625065-1625084 | None:intergenic | 35.0% |
| AAACACACATGTATCTTCAG+TGG | - | chr7_3:1625362-1625381 | None:intergenic | 35.0% | |
| ! | ACGAAGTTTTTGTAGGCTTG+TGG | - | chr7_3:1625058-1625077 | None:intergenic | 40.0% |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_3:1625408-1625427 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_3:1625417-1625436 | Msa1088460:intron | 40.0% |
| !! | TCGTTGATTTGATCTCGTTG+AGG | - | chr7_3:1625443-1625462 | None:intergenic | 40.0% |
| ! | ACGAAGTTTTTGTAGGCTTG+TGG | - | chr7_3:1625058-1625077 | None:intergenic | 40.0% |
| CAAATTTCGCGAGAGATTGA+AGG | - | chr7_3:1625408-1625427 | None:intergenic | 40.0% | |
| !! | CGCGAAATTTGCTGAGAATT+TGG | + | chr7_3:1625417-1625436 | Msa1088460:intron | 40.0% |
| !! | TCGTTGATTTGATCTCGTTG+AGG | - | chr7_3:1625443-1625462 | None:intergenic | 40.0% |
| AAAAGCTGCCATGTCATCCT+CGG | + | chr7_3:1625079-1625098 | Msa1088460:CDS | 45.0% | |
| GTCATCAGCTTCAGCATGAT+TGG | + | chr7_3:1625202-1625221 | Msa1088460:CDS | 45.0% | |
| ATCAGCTTCAGCATGATTGG+CGG | + | chr7_3:1625205-1625224 | Msa1088460:CDS | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_3:1625332-1625351 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_3:1625331-1625350 | Msa1088460:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_3:1625352-1625371 | None:intergenic | 45.0% | |
| AAAAGCTGCCATGTCATCCT+CGG | + | chr7_3:1625079-1625098 | Msa1088460:CDS | 45.0% | |
| GTCATCAGCTTCAGCATGAT+TGG | + | chr7_3:1625202-1625221 | Msa1088460:CDS | 45.0% | |
| ATCAGCTTCAGCATGATTGG+CGG | + | chr7_3:1625205-1625224 | Msa1088460:CDS | 45.0% | |
| AGGTGGAACATCAACAACGT+AGG | - | chr7_3:1625332-1625351 | None:intergenic | 45.0% | |
| TACGTTGTTGATGTTCCACC+TGG | + | chr7_3:1625331-1625350 | Msa1088460:CDS | 45.0% | |
| GTATCTTCAGTGGTGTTTCC+AGG | - | chr7_3:1625352-1625371 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTTATTATTGTT+AGG | + | chr7_3:1625592-1625611 | Msa1088460:intron | 5.0% |
| !!! | TTTTTATTTTTATTATTGTT+AGG | + | chr7_3:1625592-1625611 | Msa1088460:intron | 5.0% |
| TGCGGCGATATGTTGGATGA+CGG | - | chr7_3:1624993-1625012 | None:intergenic | 50.0% | |
| ATTGTCGAAGCGACGGACAA+CGG | - | chr7_3:1625035-1625054 | None:intergenic | 50.0% | |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_3:1625042-1625061 | None:intergenic | 50.0% |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_3:1625170-1625189 | None:intergenic | 50.0% |
| TGACGTGACGTTCATCGTCT+AGG | - | chr7_3:1625186-1625205 | None:intergenic | 50.0% | |
| CAGAACGGTAGTTAGCAAGC+CGG | - | chr7_3:1625237-1625256 | None:intergenic | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_3:1625252-1625271 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_3:1625280-1625299 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_3:1625349-1625368 | None:intergenic | 50.0% | |
| TGCGGCGATATGTTGGATGA+CGG | - | chr7_3:1624993-1625012 | None:intergenic | 50.0% | |
| ATTGTCGAAGCGACGGACAA+CGG | - | chr7_3:1625035-1625054 | None:intergenic | 50.0% | |
| ! | CTTGTGGATTGTCGAAGCGA+CGG | - | chr7_3:1625042-1625061 | None:intergenic | 50.0% |
| ! | GTCTAGGACTTCGAGACGTT+CGG | - | chr7_3:1625170-1625189 | None:intergenic | 50.0% |
| TGACGTGACGTTCATCGTCT+AGG | - | chr7_3:1625186-1625205 | None:intergenic | 50.0% | |
| CAGAACGGTAGTTAGCAAGC+CGG | - | chr7_3:1625237-1625256 | None:intergenic | 50.0% | |
| GGTGAAGAGTGGTGACAGAA+CGG | - | chr7_3:1625252-1625271 | None:intergenic | 50.0% | |
| TTGCCATCTTCGTCGGAGAT+CGG | - | chr7_3:1625280-1625299 | None:intergenic | 50.0% | |
| TCTTCAGTGGTGTTTCCAGG+TGG | - | chr7_3:1625349-1625368 | None:intergenic | 50.0% | |
| ! | GGCGATATGTTGGATGACGG+CGG | - | chr7_3:1624990-1625009 | None:intergenic | 55.0% |
| !! | TTCGAGACGTTCGGTGCTGA+CGG | - | chr7_3:1625161-1625180 | None:intergenic | 55.0% |
| GCATGATTGGCGGTGATCAC+CGG | + | chr7_3:1625215-1625234 | Msa1088460:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_3:1625263-1625282 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_3:1625273-1625292 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_3:1625274-1625293 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_3:1625274-1625293 | Msa1088460:CDS | 55.0% | |
| !! | GCGTTGGTTGCCATCTTCGT+CGG | - | chr7_3:1625287-1625306 | None:intergenic | 55.0% |
| GAAGATGGCAACCAACGCTC+CGG | + | chr7_3:1625289-1625308 | Msa1088460:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_3:1625311-1625330 | None:intergenic | 55.0% | |
| ! | GGCGATATGTTGGATGACGG+CGG | - | chr7_3:1624990-1625009 | None:intergenic | 55.0% |
| !! | TTCGAGACGTTCGGTGCTGA+CGG | - | chr7_3:1625161-1625180 | None:intergenic | 55.0% |
| GCATGATTGGCGGTGATCAC+CGG | + | chr7_3:1625215-1625234 | Msa1088460:CDS | 55.0% | |
| ! | GATCGGACTAGGGTGAAGAG+TGG | - | chr7_3:1625263-1625282 | None:intergenic | 55.0% |
| CTTCGTCGGAGATCGGACTA+GGG | - | chr7_3:1625273-1625292 | None:intergenic | 55.0% | |
| TCTTCGTCGGAGATCGGACT+AGG | - | chr7_3:1625274-1625293 | None:intergenic | 55.0% | |
| AGTCCGATCTCCGACGAAGA+TGG | + | chr7_3:1625274-1625293 | Msa1088460:CDS | 55.0% | |
| !! | GCGTTGGTTGCCATCTTCGT+CGG | - | chr7_3:1625287-1625306 | None:intergenic | 55.0% |
| GAAGATGGCAACCAACGCTC+CGG | + | chr7_3:1625289-1625308 | Msa1088460:CDS | 55.0% | |
| GGATTCAACAACCACCGTGC+CGG | - | chr7_3:1625311-1625330 | None:intergenic | 55.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_3:1624914-1624933 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_3:1624949-1624968 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_3:1624974-1624993 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATATGT+TGG | - | chr7_3:1625000-1625019 | None:intergenic | 60.0% | |
| AACGGACCAGACGGTGGAGA+CGG | - | chr7_3:1625017-1625036 | None:intergenic | 60.0% | |
| TGCCATGTCATCCTCGGCGA+CGG | + | chr7_3:1625085-1625104 | Msa1088460:CDS | 60.0% | |
| CGGAGATGACGCGGACTTCA+CGG | - | chr7_3:1625126-1625145 | None:intergenic | 60.0% | |
| CGTGAAGTCCGCGTCATCTC+CGG | + | chr7_3:1625124-1625143 | Msa1088460:intron | 60.0% | |
| GGGACGGTGGTTGTTGGGTT+TGG | - | chr7_3:1624914-1624933 | None:intergenic | 60.0% | |
| AGACTGCGTGGGTGTGGTAG+CGG | - | chr7_3:1624949-1624968 | None:intergenic | 60.0% | |
| ! | ACGGCGGAGCAACACTGGTT+GGG | - | chr7_3:1624974-1624993 | None:intergenic | 60.0% |
| AGACGGGTGCGGCGATATGT+TGG | - | chr7_3:1625000-1625019 | None:intergenic | 60.0% | |
| AACGGACCAGACGGTGGAGA+CGG | - | chr7_3:1625017-1625036 | None:intergenic | 60.0% | |
| TGCCATGTCATCCTCGGCGA+CGG | + | chr7_3:1625085-1625104 | Msa1088460:CDS | 60.0% | |
| CGGAGATGACGCGGACTTCA+CGG | - | chr7_3:1625126-1625145 | None:intergenic | 60.0% | |
| CGTGAAGTCCGCGTCATCTC+CGG | + | chr7_3:1625124-1625143 | Msa1088460:intron | 60.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_3:1624919-1624938 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_3:1624948-1624967 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_3:1624960-1624979 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_3:1624961-1624980 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_3:1624972-1624991 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_3:1624973-1624992 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_3:1624975-1624994 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_3:1624979-1624998 | None:intergenic | 65.0% |
| ACGGACCAGACGGTGGAGAC+GGG | - | chr7_3:1625016-1625035 | None:intergenic | 65.0% | |
| ACGGACAACGGACCAGACGG+TGG | - | chr7_3:1625023-1625042 | None:intergenic | 65.0% | |
| GCGACGGACAACGGACCAGA+CGG | - | chr7_3:1625026-1625045 | None:intergenic | 65.0% | |
| TGCCGTCGCCGAGGATGACA+TGG | - | chr7_3:1625090-1625109 | None:intergenic | 65.0% | |
| ATCCTCGGCGACGGCAACGT+CGG | + | chr7_3:1625094-1625113 | Msa1088460:CDS | 65.0% | |
| !! | GAGACGTTCGGTGCTGACGG+CGG | - | chr7_3:1625158-1625177 | None:intergenic | 65.0% |
| TGGCAACCAACGCTCCGGCA+CGG | + | chr7_3:1625294-1625313 | Msa1088460:CDS | 65.0% | |
| CGTCGGGGACGGTGGTTGTT+GGG | - | chr7_3:1624919-1624938 | None:intergenic | 65.0% | |
| GACTGCGTGGGTGTGGTAGC+GGG | - | chr7_3:1624948-1624967 | None:intergenic | 65.0% | |
| CTGGTTGGGGGAGACTGCGT+GGG | - | chr7_3:1624960-1624979 | None:intergenic | 65.0% | |
| ACTGGTTGGGGGAGACTGCG+TGG | - | chr7_3:1624961-1624980 | None:intergenic | 65.0% | |
| ! | GGCGGAGCAACACTGGTTGG+GGG | - | chr7_3:1624972-1624991 | None:intergenic | 65.0% |
| ! | CGGCGGAGCAACACTGGTTG+GGG | - | chr7_3:1624973-1624992 | None:intergenic | 65.0% |
| GACGGCGGAGCAACACTGGT+TGG | - | chr7_3:1624975-1624994 | None:intergenic | 65.0% | |
| ! | GGATGACGGCGGAGCAACAC+TGG | - | chr7_3:1624979-1624998 | None:intergenic | 65.0% |
| ACGGACCAGACGGTGGAGAC+GGG | - | chr7_3:1625016-1625035 | None:intergenic | 65.0% | |
| ACGGACAACGGACCAGACGG+TGG | - | chr7_3:1625023-1625042 | None:intergenic | 65.0% | |
| GCGACGGACAACGGACCAGA+CGG | - | chr7_3:1625026-1625045 | None:intergenic | 65.0% | |
| TGCCGTCGCCGAGGATGACA+TGG | - | chr7_3:1625090-1625109 | None:intergenic | 65.0% | |
| ATCCTCGGCGACGGCAACGT+CGG | + | chr7_3:1625094-1625113 | Msa1088460:CDS | 65.0% | |
| !! | GAGACGTTCGGTGCTGACGG+CGG | - | chr7_3:1625158-1625177 | None:intergenic | 65.0% |
| TGGCAACCAACGCTCCGGCA+CGG | + | chr7_3:1625294-1625313 | Msa1088460:CDS | 65.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_3:1624920-1624939 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_3:1624935-1624954 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_3:1624936-1624955 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_3:1624942-1624961 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_3:1624955-1624974 | None:intergenic | 70.0% | |
| CCAGACGGTGGAGACGGGTG+CGG | - | chr7_3:1625011-1625030 | None:intergenic | 70.0% | |
| !! | ACGTTCGGTGCTGACGGCGG+CGG | - | chr7_3:1625155-1625174 | None:intergenic | 70.0% |
| CAACCAACGCTCCGGCACGG+TGG | + | chr7_3:1625297-1625316 | Msa1088460:CDS | 70.0% | |
| CAACCACCGTGCCGGAGCGT+TGG | - | chr7_3:1625303-1625322 | None:intergenic | 70.0% | |
| GCGTCGGGGACGGTGGTTGT+TGG | - | chr7_3:1624920-1624939 | None:intergenic | 70.0% | |
| !! | TGGTAGCGGGCGATGGCGTC+GGG | - | chr7_3:1624935-1624954 | None:intergenic | 70.0% |
| !! | GTGGTAGCGGGCGATGGCGT+CGG | - | chr7_3:1624936-1624955 | None:intergenic | 70.0% |
| !! | GTGGGTGTGGTAGCGGGCGA+TGG | - | chr7_3:1624942-1624961 | None:intergenic | 70.0% |
| TGGGGGAGACTGCGTGGGTG+TGG | - | chr7_3:1624955-1624974 | None:intergenic | 70.0% | |
| CCAGACGGTGGAGACGGGTG+CGG | - | chr7_3:1625011-1625030 | None:intergenic | 70.0% | |
| !! | ACGTTCGGTGCTGACGGCGG+CGG | - | chr7_3:1625155-1625174 | None:intergenic | 70.0% |
| CAACCAACGCTCCGGCACGG+TGG | + | chr7_3:1625297-1625316 | Msa1088460:CDS | 70.0% | |
| CAACCACCGTGCCGGAGCGT+TGG | - | chr7_3:1625303-1625322 | None:intergenic | 70.0% | |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_3:1624934-1624953 | None:intergenic | 75.0% |
| CCGCACCCGTCTCCACCGTC+TGG | + | chr7_3:1625008-1625027 | Msa1088460:CDS | 75.0% | |
| TGCCGACGTTGCCGTCGCCG+AGG | - | chr7_3:1625099-1625118 | None:intergenic | 75.0% | |
| CGGGGAGGCCGGAGATGACG+CGG | - | chr7_3:1625135-1625154 | None:intergenic | 75.0% | |
| !! | GTTCGGTGCTGACGGCGGCG+GGG | - | chr7_3:1625153-1625172 | None:intergenic | 75.0% |
| !! | CGTTCGGTGCTGACGGCGGC+GGG | - | chr7_3:1625154-1625173 | None:intergenic | 75.0% |
| !! | GGTAGCGGGCGATGGCGTCG+GGG | - | chr7_3:1624934-1624953 | None:intergenic | 75.0% |
| CCGCACCCGTCTCCACCGTC+TGG | + | chr7_3:1625008-1625027 | Msa1088460:CDS | 75.0% | |
| TGCCGACGTTGCCGTCGCCG+AGG | - | chr7_3:1625099-1625118 | None:intergenic | 75.0% | |
| CGGGGAGGCCGGAGATGACG+CGG | - | chr7_3:1625135-1625154 | None:intergenic | 75.0% | |
| !! | GTTCGGTGCTGACGGCGGCG+GGG | - | chr7_3:1625153-1625172 | None:intergenic | 75.0% |
| !! | CGTTCGGTGCTGACGGCGGC+GGG | - | chr7_3:1625154-1625173 | None:intergenic | 75.0% |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_3:1624927-1624946 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_3:1624930-1624949 | None:intergenic | 80.0% |
| !! | GGCGATGGCGTCGGGGACGG+TGG | - | chr7_3:1624927-1624946 | None:intergenic | 80.0% |
| !! | GCGGGCGATGGCGTCGGGGA+CGG | - | chr7_3:1624930-1624949 | None:intergenic | 80.0% |
| ! | GCTGACGGCGGCGGGGAGGC+CGG | - | chr7_3:1625146-1625165 | None:intergenic | 85.0% |
| !!! | CGGTGCTGACGGCGGCGGGG+AGG | - | chr7_3:1625150-1625169 | None:intergenic | 85.0% |
| ! | GCTGACGGCGGCGGGGAGGC+CGG | - | chr7_3:1625146-1625165 | None:intergenic | 85.0% |
| !!! | CGGTGCTGACGGCGGCGGGG+AGG | - | chr7_3:1625150-1625169 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 1624905 | 1625777 | 1624905 | ID=Msa1088460;Name=Msa1088460 |
| chr7_3 | mRNA | 1624905 | 1625777 | 1624905 | ID=Msa1088460-mRNA-1;Parent=Msa1088460;Name=Msa1088460-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0.33|1|0|0|3|144|160 |
| chr7_3 | exon | 1624905 | 1625124 | 1624905 | ID=Msa1088460-mRNA-1:exon:610;Parent=Msa1088460-mRNA-1 |
| chr7_3 | exon | 1625131 | 1625373 | 1625131 | ID=Msa1088460-mRNA-1:exon:611;Parent=Msa1088460-mRNA-1 |
| chr7_3 | exon | 1625614 | 1625777 | 1625614 | ID=Msa1088460-mRNA-1:exon:612;Parent=Msa1088460-mRNA-1 |
| chr7_3 | CDS | 1624905 | 1625124 | 1624905 | ID=Msa1088460-mRNA-1:cds;Parent=Msa1088460-mRNA-1 |
| chr7_3 | CDS | 1625131 | 1625373 | 1625131 | ID=Msa1088460-mRNA-1:cds;Parent=Msa1088460-mRNA-1 |
| chr7_3 | CDS | 1625614 | 1625633 | 1625614 | ID=Msa1088460-mRNA-1:cds;Parent=Msa1088460-mRNA-1 |
| chr7_3 | three_prime_UTR | 1625634 | 1625777 | 1625634 | ID=Msa1088460-mRNA-1:three_prime_utr;Parent=Msa1088460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
