AlfalfaGEDB | Msa0667010

M. sativa cultivar zhongmu-4 / Msa0667010

KEGG: K14496
GO: -
PFAM: PF10604.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667010	XP_003604555.1	95.413	218	7	1	1	218	1	215	2.00e-147	419

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667010	sp\|O80920\|PYL4_ARATH	67.052	173	53	2	47	218	37	206	4.51e-72	221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667010	G7JKP6	95.413	218	7	1	1	218	1	215	9.53e-148	419

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0019570	Msa0667010	0.807685	4.480438e-50	-8.615850e-47
Msa0026700	Msa0667010	0.810882	9.238718e-51	-8.615850e-47
Msa0145090	Msa0667010	0.804133	2.500330e-49	-8.615850e-47
Msa0145200	Msa0667010	0.822876	1.873142e-53	-8.615850e-47
Msa0179830	Msa0667010	0.821272	4.410467e-53	-8.615850e-47
Msa0291940	Msa0667010	-0.802813	4.694526e-49	-8.615850e-47
Msa0532210	Msa0667010	0.999696	0.000000e+00	-8.615850e-47
Msa0629220	Msa0667010	0.962938	1.775509e-121	-8.615850e-47
Msa0667010	Msa0690190	0.823246	1.535545e-53	-8.615850e-47
Msa0667010	Msa0759610	0.825410	4.758802e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667010	MtrunA17_Chr4g0005501	95.413	218	7	1	1	218	1	215	1.84e-151	419
Msa0667010	MtrunA17_Chr7g0243271	65.775	187	56	3	36	215	1	186	8.40e-77	229
Msa0667010	MtrunA17_Chr5g0437611	62.941	170	58	3	42	209	39	205	2.15e-70	213
Msa0667010	MtrunA17_Chr3g0114121	61.988	171	60	4	47	216	64	230	3.12e-69	211
Msa0667010	MtrunA17_Chr1g0158871	45.902	183	94	2	31	213	5	182	5.49e-55	174
Msa0667010	MtrunA17_Chr5g0411391	53.659	164	72	2	49	208	44	207	6.75e-55	174
Msa0667010	MtrunA17_Chr8g0347191	48.171	164	84	1	49	212	73	235	9.30e-54	172
Msa0667010	MtrunA17_Chr1g0151661	52.500	160	72	3	49	206	39	196	4.07e-53	169
Msa0667010	MtrunA17_Chr3g0126471	43.956	182	97	2	32	213	8	184	1.05e-52	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667010	AT2G38310.1	67.052	173	53	2	47	218	37	206	4.58e-73	221
Msa0667010	AT5G05440.1	64.815	162	53	2	45	205	41	199	2.24e-70	214
Msa0667010	AT2G40330.1	59.064	171	65	3	45	211	44	213	3.49e-66	203
Msa0667010	AT5G53160.2	48.485	165	84	1	49	213	19	182	3.46e-56	177
Msa0667010	AT1G01360.1	47.531	162	84	1	52	213	24	184	1.42e-55	175
Msa0667010	AT4G01026.1	49.068	161	81	1	53	213	27	186	1.11e-53	171
Msa0667010	AT2G26040.1	49.398	166	82	1	43	206	16	181	1.63e-53	170
Msa0667010	AT4G27920.1	46.667	165	88	0	49	213	14	178	5.29e-52	166
Msa0667010	AT4G17870.1	48.810	168	85	1	45	211	13	180	7.88e-52	166
Msa0667010	AT1G73000.1	46.199	171	82	4	43	203	31	201	3.48e-44	147

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Find 74 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGTTGTAACCTCGTTGG+TGG	0.571438	4_4:-7240664	Msa0667010:CDS
ACACTTCATCCCTCCACAGA+GGG	0.594198	4_4:-7240481	Msa0667010:CDS
ACCAACCACCACGACCTCCA+CGG	0.628316	4_4:-7240877	Msa0667010:CDS
ACGCCTTGAGATCCTCGATG+AGG	0.696994	4_4:-7240572	Msa0667010:CDS
ACGGTGATGTGGGCACACTC+AGG	0.539446	4_4:-7240639	Msa0667010:CDS
AGAGGGTGACTGTTCCGGCA+CGG	0.639448	4_4:-7240464	Msa0667010:CDS
AGGAGAAGTGAAGACTTTGG+TGG	0.533916	4_4:+7240934	None:intergenic
AGGCTTGTGGTTTGTCGAAG+CGG	0.573243	4_4:+7240701	None:intergenic
AGGGAGGTCAACCTTATATC+TGG	0.399072	4_4:-7240619	Msa0667010:CDS
AGTCTTCACTTCTCCTCCAC+AGG	0.523366	4_4:-7240927	Msa0667010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAGTATTAGGAATGGTGT+TGG	+	chr4_4:7240439-7240458	None:intergenic	30.0%
TATTGAGTGTGTGTGATAGT+GGG	+	chr4_4:7240463-7240482	None:intergenic	35.0%
ATATTGAGTGTGTGTGATAG+TGG	+	chr4_4:7240464-7240483	None:intergenic	35.0%
TCCTTCGGAAAATACTAAAG+AGG	-	chr4_4:7240845-7240864	Msa0667010:CDS	35.0%
ATCATCCGACCAATTATGCT+CGG	-	chr4_4:7240482-7240501	Msa0667010:CDS	40.0%
ATCAAGAGTTGTAACCTCGT+TGG	-	chr4_4:7240591-7240610	Msa0667010:CDS	40.0%
CAACACTGAAACTGATGACA+TGG	+	chr4_4:7240716-7240735	None:intergenic	40.0%
GTCATCAGTTTCAGTGTTGT+TGG	-	chr4_4:7240717-7240736	Msa0667010:CDS	40.0%
AGGAGAAGTGAAGACTTTGG+TGG	+	chr4_4:7240327-7240346	None:intergenic	45.0%
TGGAGGAGAAGTGAAGACTT+TGG	+	chr4_4:7240330-7240349	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	7240312	7240968	7240312	ID=Msa0667010;Name=Msa0667010
chr4_4	mRNA	7240312	7240968	7240312	ID=Msa0667010-mRNA-1;Parent=Msa0667010;Name=Msa0667010-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|218
chr4_4	exon	7240312	7240968	7240312	ID=Msa0667010-mRNA-1:exon:2357;Parent=Msa0667010-mRNA-1
chr4_4	CDS	7240312	7240968	7240312	ID=Msa0667010-mRNA-1:cds;Parent=Msa0667010-mRNA-1

Gene Sequence

>Msa0667010

ATGCCTCCAAATCCACCAAAGTCTTCACTTCTCCTCCACAGGATCAACCACACCACCACTACGACCATCACCAACCACCACGACCTCCACGGCGAAAACAACACCCTCTTCATCAACCCTGTCACCAACACCATTCCTAATACTATAGCCCACTATCACACACACTCAATATCATCCGACCAATTATGCTCGGCGGTCGTCCAAGAGACAACCGCCTCCATCACCGCCGTTTGGTCAGTGGTTCGCCGCTTCGACAAACCACAAGCCTACAAAAATTTCATCAAGAGTTGTAACCTCGTTGGTGGCGACGGTGATGTGGGCACACTCAGGGAGGTCAACCTTATATCTGGCCTCCCTGCTGCACGCAGCACCGAACGCCTTGAGATCCTCGATGAGGATCGCCATGTCATCAGTTTCAGTGTTGTTGGTGGTGATCACAAGCTTGCTAACTACCGTTCCGTTACTACACTTCATCCCTCCACAGAGGGTGACTGTTCCGGCACGGTGATAGTTGAGTCCTATGTGGTGGATATTCCTTCGGAAAATACTAAAGAGGACACACATGTGTTTGTTGATACAATTGTTCGGTGTAACCTTCAGTCACTTGCACAAACAGCAGAGAACATTACACAGCAAAACAACAAGAGTTGTTCCTGA

Protein sequence

>Msa0667010

MPPNPPKSSLLLHRINHTTTTTITNHHDLHGENNTLFINPVTNTIPNTIAHYHTHSISSDQLCSAVVQETTASITAVWSVVRRFDKPQAYKNFIKSCNLVGGDGDVGTLREVNLISGLPAARSTERLEILDEDRHVISFSVVGGDHKLANYRSVTTLHPSTEGDCSGTVIVESYVVDIPSENTKEDTHVFVDTIVRCNLQSLAQTAENITQQNNKSCS*