AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0640920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640920 MtrunA17_Chr4g0025441 97.926 434 8 1 1 434 1 433 0.0 870
Msa0640920 MtrunA17_Chr3g0135851 45.620 274 135 4 1 266 1 268 6.62e-56 191
Msa0640920 MtrunA17_Chr1g0200161 51.366 183 79 4 94 271 138 315 4.22e-51 179
Msa0640920 MtrunA17_Chr6g0462191 39.752 322 172 6 89 392 99 416 6.20e-49 172
Msa0640920 MtrunA17_Chr7g0263731 52.632 171 80 1 96 265 107 277 2.09e-45 164
Msa0640920 MtrunA17_Chr2g0316401 44.242 165 92 0 99 263 76 240 5.10e-45 159
Msa0640920 MtrunA17_Chr2g0283321 45.349 172 92 1 99 270 65 234 2.99e-44 156
Msa0640920 MtrunA17_Chr1g0181581 49.383 162 80 2 96 256 115 275 3.26e-44 160
Msa0640920 MtrunA17_Chr8g0346021 46.535 202 87 7 96 280 126 323 6.61e-42 155
Msa0640920 MtrunA17_Chr8g0342551 37.410 278 145 5 1 265 1 262 4.43e-37 140
Msa0640920 MtrunA17_Chr2g0330051 53.107 177 73 3 96 262 77 253 3.67e-33 129
Msa0640920 MtrunA17_Chr1g0146931 47.500 200 72 5 96 265 121 317 1.64e-32 128
Msa0640920 MtrunA17_Chr4g0045641 33.721 344 166 17 99 392 148 479 3.87e-32 128
Msa0640920 MtrunA17_Chr4g0020671 28.116 345 198 10 96 417 100 417 1.07e-27 114
Msa0640920 MtrunA17_Chr3g0126901 44.886 176 78 5 97 259 112 281 4.16e-25 107
Msa0640920 MtrunA17_Chr7g0273861 34.444 180 103 5 80 255 108 276 2.37e-24 104
Msa0640920 MtrunA17_Chr1g0204901 48.673 113 45 2 96 195 135 247 6.20e-24 103
Msa0640920 MtrunA17_Chr6g0472551 39.053 169 75 3 92 260 112 252 1.66e-22 99.4
Msa0640920 MtrunA17_Chr1g0203711 40.000 160 69 3 96 255 114 246 1.97e-22 99.0
Msa0640920 MtrunA17_Chr8g0340761 37.186 199 92 6 1 168 1 197 2.13e-22 98.6
Msa0640920 MtrunA17_Chr2g0330921 35.096 208 94 6 1 185 1 190 7.65e-22 96.3
Msa0640920 MtrunA17_Chr4g0060381 30.605 281 131 9 4 261 5 244 7.90e-22 98.2
Msa0640920 MtrunA17_Chr8g0389781 66.667 66 22 0 96 161 125 190 1.00e-20 94.0
Msa0640920 MtrunA17_Chr8g0371131 63.235 68 25 0 93 160 67 134 1.45e-19 84.7
Msa0640920 MtrunA17_Chr7g0273951 61.194 67 26 0 99 165 108 174 3.62e-19 89.0
Msa0640920 MtrunA17_Chr4g0057321 39.752 161 86 4 1 160 1 151 1.00e-18 87.8
Msa0640920 MtrunA17_Chr1g0156121 33.537 164 81 5 97 257 124 262 3.36e-17 84.3
Msa0640920 MtrunA17_Chr1g0166431 48.148 108 51 1 96 198 116 223 5.68e-17 82.8
Msa0640920 MtrunA17_Chr1g0172611 35.878 131 75 2 99 221 107 236 3.81e-14 73.6
Msa0640920 MtrunA17_Chr5g0416161 49.231 65 33 0 99 163 121 185 6.71e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640920 AT3G22190.3 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0640920 AT3G22190.2 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0640920 AT3G22190.4 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0640920 AT3G22190.1 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0640920 AT2G26180.1 50.545 275 113 6 1 266 1 261 4.25e-68 223
Msa0640920 AT1G72670.1 39.583 288 160 5 1 280 1 282 2.17e-54 186
Msa0640920 AT5G03040.1 49.425 174 77 3 94 261 112 280 5.68e-49 173
Msa0640920 AT5G03040.3 49.425 174 77 3 94 261 112 280 5.68e-49 173
Msa0640920 AT5G03040.2 49.425 174 77 3 94 261 112 280 5.68e-49 173
Msa0640920 AT3G52290.1 48.634 183 86 4 96 276 107 283 4.16e-46 165
Msa0640920 AT3G09710.1 42.932 191 105 2 96 285 107 294 1.18e-42 156
Msa0640920 AT2G33990.1 41.176 170 99 1 95 264 45 213 3.24e-41 147
Msa0640920 AT3G15050.1 42.424 165 95 0 99 263 52 216 7.46e-41 146
Msa0640920 AT1G17480.1 37.066 259 136 6 1 252 1 239 2.34e-40 148
Msa0640920 AT3G09710.2 40.976 205 103 5 96 285 107 308 3.15e-40 150
Msa0640920 AT4G00820.1 40.889 225 107 6 55 263 96 310 4.26e-40 150
Msa0640920 AT3G49260.1 44.737 190 90 5 88 263 112 300 2.37e-39 147
Msa0640920 AT3G49260.4 44.737 190 90 5 88 263 112 300 2.37e-39 147
Msa0640920 AT3G49260.2 44.737 190 90 5 88 263 112 300 2.37e-39 147
Msa0640920 AT3G49260.3 42.714 199 82 5 88 263 112 301 4.19e-39 147
Msa0640920 AT2G26410.2 42.373 177 93 5 96 266 147 320 1.21e-35 138
Msa0640920 AT2G26410.1 42.373 177 93 5 96 266 147 320 1.21e-35 138
Msa0640920 AT1G01110.2 41.530 183 92 3 96 263 120 302 9.17e-34 133
Msa0640920 AT3G59690.2 44.586 157 74 6 100 253 172 318 1.21e-31 127
Msa0640920 AT3G59690.1 44.586 157 74 6 100 253 172 318 1.21e-31 127
Msa0640920 AT4G10640.1 33.441 311 145 8 98 383 101 374 1.28e-28 117
Msa0640920 AT2G43680.4 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0640920 AT2G43680.2 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0640920 AT2G43680.3 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0640920 AT2G43680.5 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0640920 AT2G43680.1 38.994 159 81 6 99 253 325 471 1.29e-25 110
Msa0640920 AT5G13460.1 36.413 184 100 5 79 255 89 262 1.71e-25 108
Msa0640920 AT4G14750.1 68.657 67 21 0 96 162 104 170 5.34e-23 100
Msa0640920 AT4G14750.2 68.657 67 21 0 96 162 163 229 1.16e-22 100
Msa0640920 AT4G14750.3 68.657 67 21 0 96 162 163 229 1.21e-22 100
Msa0640920 AT4G23060.1 60.976 82 32 0 89 170 159 240 9.91e-22 97.8
Msa0640920 AT3G16490.1 66.154 65 22 0 96 160 106 170 1.54e-20 93.2
Msa0640920 AT5G07240.1 67.647 68 22 0 90 157 99 166 6.73e-20 91.7
Msa0640920 AT5G07240.2 67.647 68 22 0 90 157 145 212 9.81e-20 91.7
Msa0640920 AT1G19870.1 30.769 208 105 3 96 302 214 383 1.44e-19 92.0
Msa0640920 AT1G51960.1 61.644 73 27 1 93 164 95 167 1.60e-19 89.7
Msa0640920 AT1G19870.2 30.769 208 105 3 96 302 31 200 1.65e-19 91.7
Msa0640920 AT1G18840.1 47.778 90 43 1 78 163 86 175 1.81e-19 91.3
Msa0640920 AT1G18840.3 47.778 90 43 1 78 163 86 175 1.81e-19 91.3
Msa0640920 AT1G18840.2 47.778 90 43 1 78 163 86 175 1.81e-19 91.3
Msa0640920 AT1G74690.1 41.538 130 62 3 39 163 59 179 7.29e-19 89.4
Msa0640920 AT3G51380.1 64.615 65 23 0 94 158 34 98 7.86e-18 79.0
Msa0640920 AT1G14380.1 35.329 167 97 5 1 163 1 160 1.35e-17 85.9
Msa0640920 AT1G14380.3 35.329 167 97 5 1 163 1 160 1.35e-17 85.9
Msa0640920 AT1G14380.4 35.329 167 97 5 1 163 1 160 1.35e-17 85.9
Msa0640920 AT1G14380.6 35.329 167 97 5 1 163 1 160 1.47e-17 85.5
Msa0640920 AT1G14380.5 35.329 167 97 5 1 163 1 160 1.47e-17 85.5
Msa0640920 AT1G14380.2 35.329 167 97 5 1 163 1 160 1.47e-17 85.5
Msa0640920 AT1G14380.7 35.329 167 97 5 1 163 1 160 2.03e-17 85.1
Msa0640920 AT5G62070.1 67.742 62 20 0 90 151 110 171 4.15e-17 83.2
Msa0640920 AT3G49380.1 64.615 65 23 0 99 163 112 176 6.03e-17 82.4
Msa0640920 AT4G29150.1 63.077 65 24 0 96 160 130 194 2.78e-16 80.9
Msa0640920 AT5G35670.1 34.921 189 107 6 96 278 159 337 7.35e-16 79.7
Msa0640920 AT5G03960.3 38.889 126 74 2 99 221 110 235 7.88e-13 70.1
Msa0640920 AT5G03960.2 38.889 126 74 2 99 221 110 235 7.88e-13 70.1
Msa0640920 AT5G03960.1 38.889 126 74 2 99 221 109 234 8.06e-13 70.1
Msa0640920 AT2G02790.2 46.269 67 36 0 97 163 107 173 5.67e-11 65.1
Msa0640920 AT2G02790.3 46.269 67 36 0 97 163 107 173 5.67e-11 65.1
Msa0640920 AT2G02790.1 46.269 67 36 0 97 163 107 173 9.23e-11 64.3

Find 145 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGTCTCTTTAATATTT+TGG 0.074947 4_3:-40411129 None:intergenic
TGAACATTTGCATTAGATTT+TGG 0.157733 4_3:-40413383 None:intergenic
GTTAGATCTGGTAGGATATT+TGG 0.217923 4_3:-40413861 None:intergenic
ACAACGCTTGGATGAATATT+TGG 0.234812 4_3:-40413260 None:intergenic
ACTTGTGAGTTTCTCTCCTT+TGG 0.258573 4_3:-40413461 None:intergenic
AGGCAGCAGGCCGTTTCTTC+AGG 0.270335 4_3:+40413050 Msa0640920:CDS
CACATTTCCATCCTTCTCTA+AGG 0.275439 4_3:-40408742 None:intergenic
AACAGCGTTTCGTGGATTTC+TGG 0.282468 4_3:+40409852 Msa0640920:CDS
GTAGCACGCAAAAGCCTATA+AGG 0.290736 4_3:+40413897 Msa0640920:CDS
TGCTCTTTCTATCTAATTTG+TGG 0.308335 4_3:-40407261 None:intergenic
CACATCAGCGTCTTCATAGA+AGG 0.323047 4_3:-40414103 None:intergenic
AGCTTAGGTTTATCCCTTAT+AGG 0.329649 4_3:-40413911 None:intergenic
GTGAAGTAGAAGGAGAATAA+TGG 0.331113 4_3:-40409762 None:intergenic
GAGATTGGCTTGGGCTTTCA+TGG 0.335782 4_3:+40414137 Msa0640920:three_prime_UTR
AATGGGCTTCAAGGTTTGAT+TGG 0.343344 4_3:-40409744 None:intergenic
AAAGCAGTTGGGGTTGGAAT+TGG 0.353714 4_3:+40413087 Msa0640920:CDS
GAGAGTTCAGGCTCGTGTTC+GGG 0.366984 4_3:+40410735 Msa0640920:CDS
GCAAGCTTTGGTGAGAGTTC+AGG 0.371238 4_3:+40410723 Msa0640920:CDS
GTTGGAATTGGTTGGAAAGA+TGG 0.381054 4_3:+40413099 Msa0640920:CDS
ATGGGCTTCAAGGTTTGATT+GGG 0.381657 4_3:-40409743 None:intergenic
CCTGTGATTATTAGATGATT+CGG 0.383290 4_3:+40414435 Msa0640920:three_prime_UTR
GAAGAAACCAACTCAAAATC+TGG 0.385612 4_3:+40413416 Msa0640920:CDS
TGTGGTTTGATTGTTGAGAT+TGG 0.397987 4_3:+40414122 Msa0640920:three_prime_UTR
TTACTGCATGGCCTCTTACA+AGG 0.407942 4_3:-40410669 None:intergenic
AAGGAGAATAATGGGCTTCA+AGG 0.408085 4_3:-40409753 None:intergenic
CTAAGCTAAGCTGTAGAACT+TGG 0.408834 4_3:+40407351 Msa0640920:five_prime_UTR
TGAGAGTTCAGGCTCGTGTT+CGG 0.416787 4_3:+40410734 Msa0640920:CDS
TCCCCTCCTCCATTGAGCTT+AGG 0.419990 4_3:-40413926 None:intergenic
ATCAAATCACGAGCGAAGAA+TGG 0.421607 4_3:+40409812 Msa0640920:CDS
TTGATTGTTGAGATTGGCTT+GGG 0.422069 4_3:+40414128 Msa0640920:three_prime_UTR
GATGTTATGGATGGTAGAAA+TGG 0.422170 4_3:+40413194 Msa0640920:CDS
TGAACCTGATAAAAGCAGTT+GGG 0.424024 4_3:+40413076 Msa0640920:CDS
TGAAGTAGAAGGAGAATAAT+GGG 0.424231 4_3:-40409761 None:intergenic
AATGATGGTGCTGCACCTAT+TGG 0.424678 4_3:+40409700 Msa0640920:CDS
GGCATATGCTCTAGCTCATC+AGG 0.427400 4_3:+40411178 Msa0640920:CDS
TTTGAGTTGGTTTCTTCAAC+GGG 0.429692 4_3:-40413410 None:intergenic
TGCATTCAAACAGCGTTTCG+TGG 0.439864 4_3:+40409844 Msa0640920:CDS
GATGGATGGCTGTACGTCCT+TGG 0.444202 4_3:+40413117 Msa0640920:CDS
CAAAGCTCGTAGTGCTCTCC+TGG 0.445869 4_3:-40410623 None:intergenic
ATGGATGGCTGTACGTCCTT+GGG 0.447160 4_3:+40413118 Msa0640920:CDS
TCTCCGTTGTATGCAAGCTT+TGG 0.449466 4_3:+40410711 Msa0640920:CDS
GGTAGACGAAAATGATGTTA+TGG 0.450653 4_3:+40413181 Msa0640920:CDS
AAGGCGTGTTCGCTTGTCAT+TGG 0.452023 4_3:+40410759 Msa0640920:CDS
TCCACTTTGCAGTGGCAGGC+AGG 0.454817 4_3:+40413023 Msa0640920:intron
AATGCTCTAATCCACTTGCC+TGG 0.459539 4_3:-40408687 None:intergenic
AGCCAAAATATTAAAGAGAC+AGG 0.460505 4_3:+40411127 Msa0640920:CDS
GCAGGCAGGATCAAGGCAGC+AGG 0.462311 4_3:+40413037 Msa0640920:CDS
CATTCTCCATTGAGGTCCTC+AGG 0.465743 4_3:+40414004 Msa0640920:three_prime_UTR
CAACGGAATTCTTTCTCCGA+TGG 0.469679 4_3:-40409642 None:intergenic
CTTGACATTAATACGAAGGA+TGG 0.470311 4_3:+40413152 Msa0640920:CDS
TACTGCATGGCCTCTTACAA+GGG 0.472086 4_3:-40410668 None:intergenic
CTGATAAAAGCAGTTGGGGT+TGG 0.473450 4_3:+40413081 Msa0640920:CDS
TTTGATTGTTGAGATTGGCT+TGG 0.473573 4_3:+40414127 Msa0640920:three_prime_UTR
CAAAATGAGTTTGACAATGA+TGG 0.481901 4_3:+40409685 Msa0640920:CDS
TCAAATCACGAGCGAAGAAT+GGG 0.482710 4_3:+40409813 Msa0640920:CDS
TGTACTTGTTGTGAAGTAGA+AGG 0.484072 4_3:-40409772 None:intergenic
TGTGTGACGCAAAGGGTTGA+GGG 0.488823 4_3:+40414053 Msa0640920:three_prime_UTR
GCATGATCTACATCTCCAAT+AGG 0.489763 4_3:-40409715 None:intergenic
TGTCCCTTTCACGTTAGATC+TGG 0.490098 4_3:-40413873 None:intergenic
TTCAGGCTCGTGTTCGGGCA+AGG 0.490486 4_3:+40410740 Msa0640920:CDS
GGAGATTCCTCGTACAGTAT+TGG 0.492352 4_3:+40414392 Msa0640920:three_prime_UTR
AAACTCACAAGTAGATAAAC+CGG 0.493615 4_3:+40413472 Msa0640920:CDS
ATGTGTGACGCAAAGGGTTG+AGG 0.493849 4_3:+40414052 Msa0640920:three_prime_UTR
AGCGTTGTCAGTCACAAAAC+CGG 0.494399 4_3:+40413275 Msa0640920:CDS
CTACCAGATCTAACGTGAAA+GGG 0.494835 4_3:+40413870 Msa0640920:CDS
CTTGTTTGGTACAGGAAGGT+TGG 0.497244 4_3:+40411072 Msa0640920:intron
AGGCAAGTGGATTAGAGCAT+TGG 0.498452 4_3:+40408689 Msa0640920:CDS
GAGAACAAACTCACCATGGT+TGG 0.502802 4_3:-40413516 None:intergenic
GAGCTTTGAAAGGATTGGTA+AGG 0.506231 4_3:+40410638 Msa0640920:CDS
AAGCTGTAGAACTTGGATGA+TGG 0.507177 4_3:+40407358 Msa0640920:five_prime_UTR
CAGTTGGGGTTGGAATTGGT+TGG 0.508731 4_3:+40413091 Msa0640920:CDS
TTCTACTTCACAACAAGTAC+AGG 0.509033 4_3:+40409774 Msa0640920:CDS
AGGCTTCAAGCCCTTGTAAG+AGG 0.511278 4_3:+40410658 Msa0640920:CDS
TCATGGTTATAAGATTTGTC+AGG 0.513664 4_3:+40414154 Msa0640920:three_prime_UTR
AGGTTCAAATCCTGAAGAAA+CGG 0.515201 4_3:-40413060 None:intergenic
AAACCTAAGCTCAATGGAGG+AGG 0.518311 4_3:+40413923 Msa0640920:CDS
CTGAGGACCTCAATGGAGAA+TGG 0.518724 4_3:-40414003 None:intergenic
CCGAATCATCTAATAATCAC+AGG 0.519415 4_3:-40414435 None:intergenic
AGGGATAAACCTAAGCTCAA+TGG 0.520197 4_3:+40413917 Msa0640920:CDS
ACTTGGCAATAGCAATAAAA+CGG 0.520321 4_3:-40414286 None:intergenic
AGAACAAACTCACCATGGTT+GGG 0.522573 4_3:-40413515 None:intergenic
TAGATTGCAATGGGTGTCCC+AGG 0.522581 4_3:+40408669 Msa0640920:exon
ACTACGAGCTTTGAAAGGAT+TGG 0.522803 4_3:+40410633 Msa0640920:CDS
GGTTTGTGCTAGATTGCAAT+GGG 0.527620 4_3:+40408660 Msa0640920:intron
TAAGAAAACACCTTTCAACT+TGG 0.529260 4_3:-40414303 None:intergenic
TAGCACGCAAAAGCCTATAA+GGG 0.529406 4_3:+40413898 Msa0640920:CDS
GCCATCAGAAAGTGAAGGGC+CGG 0.529950 4_3:-40413294 None:intergenic
AGCTGTAGAACTTGGATGAT+GGG 0.530148 4_3:+40407359 Msa0640920:five_prime_UTR
ATTGCTATTGCCAAGTTGAA+AGG 0.530733 4_3:+40414293 Msa0640920:three_prime_UTR
GTGTTAGTAGACTTGAACTG+AGG 0.533731 4_3:-40413224 None:intergenic
TGCAGTGGCAGGCAGGATCA+AGG 0.534616 4_3:+40413030 Msa0640920:intron
ACCGGCCCTTCACTTTCTGA+TGG 0.540369 4_3:+40413293 Msa0640920:CDS
CGTGAATCCTTAGAGAAGGA+TGG 0.540618 4_3:+40408735 Msa0640920:CDS
TTAATACTTAGTTACACAAG+TGG 0.541167 4_3:-40413971 None:intergenic
AGCAATAAAACGGAAGGCAG+TGG 0.542235 4_3:-40414276 None:intergenic
AGGTTTGTGCTAGATTGCAA+TGG 0.544057 4_3:+40408659 Msa0640920:intron
GAACCTGATAAAAGCAGTTG+GGG 0.546214 4_3:+40413077 Msa0640920:CDS
TCTTCCACTAGCAAGTCAGC+AGG 0.546756 4_3:+40413326 Msa0640920:CDS
TTGAACCTGATAAAAGCAGT+TGG 0.552298 4_3:+40413075 Msa0640920:CDS
ATATTTGGCTGTTTGAGCCC+CGG 0.556821 4_3:-40413846 None:intergenic
CCTACCAGATCTAACGTGAA+AGG 0.557151 4_3:+40413869 Msa0640920:CDS
TTTAGCAGGTGTTGGTTCCG+GGG 0.559787 4_3:+40413829 Msa0640920:intron
ATGCTCTAATCCACTTGCCT+GGG 0.560979 4_3:-40408686 None:intergenic
CTTCTATGAAGACGCTGATG+TGG 0.562709 4_3:+40414104 Msa0640920:three_prime_UTR
ATGTCACCTGAGGACCTCAA+TGG 0.564637 4_3:-40414010 None:intergenic
GTGATTTGATGATTATGTGC+AGG 0.572761 4_3:-40409799 None:intergenic
ACCTAAGCTCAATGGAGGAG+GGG 0.573382 4_3:+40413925 Msa0640920:CDS
TGGATGATGGGAACTCAACT+CGG 0.575598 4_3:+40407371 Msa0640920:five_prime_UTR
GACGAAAATGATGTTATGGA+TGG 0.577697 4_3:+40413185 Msa0640920:CDS
CAATGGGTGTCCCAGGCAAG+TGG 0.584203 4_3:+40408676 Msa0640920:exon
ACATGCAATGTGTGACGCAA+AGG 0.587195 4_3:+40414045 Msa0640920:three_prime_UTR
AGAGCACTACGAGCTTTGAA+AGG 0.590621 4_3:+40410628 Msa0640920:CDS
GGCAATAGCAATAAAACGGA+AGG 0.595588 4_3:-40414282 None:intergenic
CAAACCTGCTGACTTGCTAG+TGG 0.597084 4_3:-40413330 None:intergenic
AAAGCGTGAATCCTTAGAGA+AGG 0.597984 4_3:+40408731 Msa0640920:CDS
AACCTAAGCTCAATGGAGGA+GGG 0.601091 4_3:+40413924 Msa0640920:CDS
AACTACTCCATTCTCCATTG+AGG 0.601785 4_3:+40413996 Msa0640920:three_prime_UTR
GAATTGGTTGGAAAGATGGA+TGG 0.603840 4_3:+40413103 Msa0640920:CDS
AAGATCTCAAAGTAATCCAA+AGG 0.605081 4_3:+40413445 Msa0640920:CDS
CATGCAATGTGTGACGCAAA+GGG 0.612688 4_3:+40414046 Msa0640920:three_prime_UTR
ACATCAGCGTCTTCATAGAA+GGG 0.614799 4_3:-40414102 None:intergenic
CACAGCCATCAGAAAGTGAA+GGG 0.617780 4_3:-40413298 None:intergenic
TCACAGCCATCAGAAAGTGA+AGG 0.617863 4_3:-40413299 None:intergenic
TAATACGAAGGATGGAGTGA+AGG 0.620363 4_3:+40413160 Msa0640920:CDS
AAGATGAGAATGACACATTG+TGG 0.631772 4_3:+40414371 Msa0640920:three_prime_UTR
AAGTGGATTAGAGCATTGGT+TGG 0.632093 4_3:+40408693 Msa0640920:CDS
CGATTATCTCTTCCCAACCA+TGG 0.632221 4_3:+40413503 Msa0640920:CDS
CAAAATATTAAAGAGACAGG+AGG 0.633283 4_3:+40411130 Msa0640920:CDS
CCTTTCACGTTAGATCTGGT+AGG 0.633476 4_3:-40413869 None:intergenic
GTGTGACGCAAAGGGTTGAG+GGG 0.635369 4_3:+40414054 Msa0640920:three_prime_UTR
TGGGCTTCAAGGTTTGATTG+GGG 0.636004 4_3:-40409742 None:intergenic
AGCAAAACGTGAGAGAGCCA+TGG 0.642186 4_3:+40411157 Msa0640920:CDS
TCAAGAAAACGATTCTCCCA+AGG 0.647063 4_3:-40413134 None:intergenic
TCACCAAAGCTTGCATACAA+CGG 0.650453 4_3:-40410714 None:intergenic
GATAAACCTAAGCTCAATGG+AGG 0.654380 4_3:+40413920 Msa0640920:CDS
GAAAACAATATCTAGAAACA+AGG 0.654980 4_3:-40414329 None:intergenic
GGAAGGTTGGTGTGACAGTG+TGG 0.655505 4_3:+40411085 Msa0640920:intron
TTACTTGCCAATACTGTACG+AGG 0.659018 4_3:-40414399 None:intergenic
AATTCCGTTGAAATTGACAA+CGG 0.663667 4_3:+40409655 Msa0640920:CDS
AGGGAGGAACATGTACATTG+TGG 0.667498 4_3:-40414083 None:intergenic
ATGAGCTAGAGCATATGCCA+TGG 0.669679 4_3:-40411174 None:intergenic
GAAGGTTGGTGTGACAGTGT+GGG 0.697609 4_3:+40411086 Msa0640920:CDS
TCAGCGTCTTCATAGAAGGG+AGG 0.707661 4_3:-40414099 None:intergenic
AAACAGACAAATGTCACCTG+AGG 0.710839 4_3:-40414020 None:intergenic
GTTGTGAGCTATGTATAATG+CGG 0.778329 4_3:+40414216 Msa0640920:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATATCTTATAATATTT+GGG - chr4_3:40409314-40409333 None:intergenic 10.0%
!! TCAGATAAAAAAAAAAAAAA+AGG - chr4_3:40409370-40409389 None:intergenic 10.0%
!! AAATATATGTTAATAAATAG+TGG - chr4_3:40410105-40410124 None:intergenic 10.0%
!! TAATAAAACAAAATAACTAT+GGG - chr4_3:40410868-40410887 None:intergenic 10.0%
!! TTAATAAAACAAAATAACTA+TGG - chr4_3:40410869-40410888 None:intergenic 10.0%
!!! GTTATTTTGTTTTATTAATA+TGG + chr4_3:40410871-40410890 Msa0640920:intron 10.0%
!!! ATTTTCTTTTCTATAAATTA+AGG + chr4_3:40412097-40412116 Msa0640920:intron 10.0%
!!! TTTATTGAATTTAGAACTTT+AGG + chr4_3:40407645-40407664 Msa0640920:intron 15.0%
!! TTTAAACAAATGTAAGAAAT+GGG - chr4_3:40408361-40408380 None:intergenic 15.0%
!! GCAAAATATCTTATAATATT+TGG - chr4_3:40409315-40409334 None:intergenic 15.0%
!! GAAAGATTAATCAAATATAA+TGG - chr4_3:40411243-40411262 None:intergenic 15.0%
!!! CTAGAATTTCATTAATTTTA+GGG - chr4_3:40412612-40412631 None:intergenic 15.0%
!!! ACTAGAATTTCATTAATTTT+AGG - chr4_3:40412613-40412632 None:intergenic 15.0%
!!! ATTGTTTTCTTTTAAGAAAT+TGG + chr4_3:40414343-40414362 Msa0640920:three_prime_UTR 15.0%
!! TGCTAAAAAGTAAGTAAAAA+GGG + chr4_3:40407432-40407451 Msa0640920:intron 20.0%
!!! ACAAAAAGTTTGAAACTTTT+AGG - chr4_3:40407588-40407607 None:intergenic 20.0%
!!! AAAGTTAAATTTTTGAATGC+TGG - chr4_3:40407614-40407633 None:intergenic 20.0%
!!! TATCTGTTGATTTATAACTA+AGG + chr4_3:40407717-40407736 Msa0640920:intron 20.0%
!!! TGTAAGATCTATTGTTTTTT+AGG + chr4_3:40407782-40407801 Msa0640920:intron 20.0%
!!! CATTTTTTTTCCATTTTTTG+TGG + chr4_3:40407882-40407901 Msa0640920:intron 20.0%
!! ACATAATTTAGTGTAATCAT+AGG + chr4_3:40408004-40408023 Msa0640920:intron 20.0%
!!! GTTTACATTTTTCTATTGAT+TGG + chr4_3:40408108-40408127 Msa0640920:intron 20.0%
!! TTAAACAAATGTAAGAAATG+GGG - chr4_3:40408360-40408379 None:intergenic 20.0%
!! CTTTAAACAAATGTAAGAAA+TGG - chr4_3:40408362-40408381 None:intergenic 20.0%
!!! AAGTCAATATTTGTTTTGAT+TGG - chr4_3:40408413-40408432 None:intergenic 20.0%
!! TCATTCAAATCTGTATATTA+AGG + chr4_3:40409029-40409048 Msa0640920:intron 20.0%
!! ATAGTTTAACAATATGAAAG+TGG - chr4_3:40409454-40409473 None:intergenic 20.0%
!!! TTATTTATCACAACATTTTG+AGG + chr4_3:40409898-40409917 Msa0640920:intron 20.0%
!! TTATCTCTTTATACTTGAAT+AGG + chr4_3:40409969-40409988 Msa0640920:intron 20.0%
!!! TATTACTTTTGCTTAGAATT+TGG + chr4_3:40410031-40410050 Msa0640920:intron 20.0%
!!! ATTACTTTTGCTTAGAATTT+GGG + chr4_3:40410032-40410051 Msa0640920:intron 20.0%
!!! CAGAATAAGTTTTTAAGTTA+GGG - chr4_3:40410532-40410551 None:intergenic 20.0%
!!! TCAGAATAAGTTTTTAAGTT+AGG - chr4_3:40410533-40410552 None:intergenic 20.0%
!! TTAATCTTTCTGTAAAATGA+CGG + chr4_3:40411253-40411272 Msa0640920:intron 20.0%
!! TAAAATTGCAAATTTCAAAG+AGG + chr4_3:40412010-40412029 Msa0640920:intron 20.0%
!! TTACATAGTAGTAAATGATT+AGG - chr4_3:40412253-40412272 None:intergenic 20.0%
!! TAATCATTTACTACTATGTA+AGG + chr4_3:40412252-40412271 Msa0640920:intron 20.0%
!! AATCATTTACTACTATGTAA+GGG + chr4_3:40412253-40412272 Msa0640920:intron 20.0%
!! TTCATGAAATTAATAATCCT+TGG + chr4_3:40412635-40412654 Msa0640920:intron 20.0%
!! AATAAAACATTGCAAAATTG+GGG - chr4_3:40412792-40412811 None:intergenic 20.0%
!! GAATAAAACATTGCAAAATT+GGG - chr4_3:40412793-40412812 None:intergenic 20.0%
!! AGAATAAAACATTGCAAAAT+TGG - chr4_3:40412794-40412813 None:intergenic 20.0%
!! TTTGCAATTATAAGTATGAA+GGG + chr4_3:40412840-40412859 Msa0640920:intron 20.0%
!! TTATTCCCTTATATTATCTA+TGG + chr4_3:40412939-40412958 Msa0640920:intron 20.0%
!! ATAAACTGTCTAATCAAAAT+TGG - chr4_3:40413661-40413680 None:intergenic 20.0%
!! AATCTAACACATTATTCAAA+AGG - chr4_3:40413772-40413791 None:intergenic 20.0%
!! TGAATAATGTGTTAGATTAA+TGG + chr4_3:40413774-40413793 Msa0640920:intron 20.0%
!!! ACACACAAACACTATTTTTA+TGG - chr4_3:40407294-40407313 None:intergenic 25.0%
!!! CTTTTTACTTACTTTTTAGC+AGG - chr4_3:40407433-40407452 None:intergenic 25.0%
! CTGCTAAAAAGTAAGTAAAA+AGG + chr4_3:40407431-40407450 Msa0640920:intron 25.0%
!!! GAAACTTTTAGGAAGAAAAT+GGG - chr4_3:40407577-40407596 None:intergenic 25.0%
!!! TGAAACTTTTAGGAAGAAAA+TGG - chr4_3:40407578-40407597 None:intergenic 25.0%
! TCTTACAACAATTGAGATAA+TGG - chr4_3:40407769-40407788 None:intergenic 25.0%
!!! TTTTTTTCCATTTTTTGTGG+AGG + chr4_3:40407885-40407904 Msa0640920:intron 25.0%
! AACATGCTTAACTAAAAGAA+AGG - chr4_3:40408509-40408528 None:intergenic 25.0%
! ATGAAGAAGCAAATATCAAA+AGG - chr4_3:40408543-40408562 None:intergenic 25.0%
! ACAAGTCATGAATAGTATAA+AGG - chr4_3:40408816-40408835 None:intergenic 25.0%
!! AGTTATTGCATTTGTACTTT+TGG + chr4_3:40408839-40408858 Msa0640920:intron 25.0%
!!! TTCCGTATGAGTTAATTTTT+TGG - chr4_3:40408913-40408932 None:intergenic 25.0%
! TTTATATTCCTGAAATCCAA+AGG + chr4_3:40408971-40408990 Msa0640920:intron 25.0%
!! TGATATTTTCAATAATCAGC+AGG + chr4_3:40409606-40409625 Msa0640920:intron 25.0%
! TCAAGTATAAAGAGATAAAG+AGG - chr4_3:40409967-40409986 None:intergenic 25.0%
! TCTGATACCAACTTAAATTT+GGG + chr4_3:40410242-40410261 Msa0640920:intron 25.0%
!! AAACATATTTTTCCCATTGA+TGG - chr4_3:40410377-40410396 None:intergenic 25.0%
!! ATGTTTTACCCTTAAAAATC+AGG + chr4_3:40410391-40410410 Msa0640920:intron 25.0%
! TAAAATGCTTATATCTACCA+AGG + chr4_3:40410430-40410449 Msa0640920:intron 25.0%
! CATTTCAAGATAAACAAATC+AGG - chr4_3:40410464-40410483 None:intergenic 25.0%
! TAAACATTTAGTTGCTAACA+AGG + chr4_3:40410559-40410578 Msa0640920:intron 25.0%
! AAATTTACGATTCCATCTAA+TGG + chr4_3:40411202-40411221 Msa0640920:intron 25.0%
! TCCATCTAATGGAAATTAAA+AGG + chr4_3:40411213-40411232 Msa0640920:intron 25.0%
! CCATCTAATGGAAATTAAAA+GGG + chr4_3:40411214-40411233 Msa0640920:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr4_3:40411604-40411623 Msa0640920:intron 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG - chr4_3:40411729-40411748 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr4_3:40411746-40411765 Msa0640920:intron 25.0%
!! AATTGCTATTCTAGTATATG+TGG + chr4_3:40411895-40411914 Msa0640920:intron 25.0%
! AAGTAATTACTTACATCTCA+CGG - chr4_3:40411964-40411983 None:intergenic 25.0%
!! GTTGGTTACATAATGTTTTA+GGG + chr4_3:40412058-40412077 Msa0640920:intron 25.0%
!!! TTACATAATGTTTTAGGGAA+AGG + chr4_3:40412063-40412082 Msa0640920:intron 25.0%
!! GCTATAAAATGTTTCTAAAC+AGG + chr4_3:40412122-40412141 Msa0640920:intron 25.0%
! GTTTATTGAGTCATAGAATA+TGG + chr4_3:40412194-40412213 Msa0640920:intron 25.0%
! ATCATTTACTACTATGTAAG+GGG + chr4_3:40412254-40412273 Msa0640920:intron 25.0%
! TGTAATTCCATAGACAAAAT+TGG + chr4_3:40412759-40412778 Msa0640920:intron 25.0%
! CTTTGCAATTATAAGTATGA+AGG + chr4_3:40412839-40412858 Msa0640920:intron 25.0%
! TGTGTCCATAGATAATATAA+GGG - chr4_3:40412947-40412966 None:intergenic 25.0%
! TTGTGTCCATAGATAATATA+AGG - chr4_3:40412948-40412967 None:intergenic 25.0%
! TAACTGAAAATATGAACCAA+AGG - chr4_3:40412981-40413000 None:intergenic 25.0%
!! TTTTCTTGACATTAATACGA+AGG + chr4_3:40413148-40413167 Msa0640920:CDS 25.0%
!! TGAACATTTGCATTAGATTT+TGG - chr4_3:40413386-40413405 None:intergenic 25.0%
! GGTGATAATCTAATACAATA+AGG - chr4_3:40413556-40413575 None:intergenic 25.0%
!! TGTTTTATGTTAAGCAAACA+TGG - chr4_3:40413599-40413618 None:intergenic 25.0%
! ATTTGCGAATTTAGTATGAT+CGG - chr4_3:40413695-40413714 None:intergenic 25.0%
! ACACATTATTCAAAAGGATT+TGG - chr4_3:40413766-40413785 None:intergenic 25.0%
! CAAGACAAAAAACTTAGAAA+TGG - chr4_3:40413806-40413825 None:intergenic 25.0%
!!! TTTTTGTCTTGTATTTTAGC+AGG + chr4_3:40413815-40413834 Msa0640920:intron 25.0%
! TTAATACTTAGTTACACAAG+TGG - chr4_3:40413974-40413993 None:intergenic 25.0%
! GAAAACAATATCTAGAAACA+AGG - chr4_3:40414332-40414351 None:intergenic 25.0%
TGCTCTTTCTATCTAATTTG+TGG - chr4_3:40407264-40407283 None:intergenic 30.0%
!! TGCATCAATTTTAGTGTTTC+AGG + chr4_3:40407503-40407522 Msa0640920:intron 30.0%
!! TATGACCAATTGTTTCTGTA+TGG + chr4_3:40407828-40407847 Msa0640920:intron 30.0%
! TATTGATTGGCAAATGTTAG+TGG + chr4_3:40408121-40408140 Msa0640920:intron 30.0%
!! ATGTTAGTGGTTAGTTTGTT+AGG + chr4_3:40408134-40408153 Msa0640920:intron 30.0%
TTCTACACTGTATACGATTT+CGG + chr4_3:40408294-40408313 Msa0640920:intron 30.0%
!!! GTTCAATTCGGTTCATTTTT+TGG + chr4_3:40408577-40408596 Msa0640920:intron 30.0%
!!! CGTATGAGTTAATTTTTTGG+CGG - chr4_3:40408910-40408929 None:intergenic 30.0%
CGCCAAAAAATTAACTCATA+CGG + chr4_3:40408908-40408927 Msa0640920:intron 30.0%
TTAATCAAACACACTTCCTT+TGG - chr4_3:40408990-40409009 None:intergenic 30.0%
! CAGTTAAAGACCTGAAATTT+TGG + chr4_3:40409088-40409107 Msa0640920:intron 30.0%
ATACAAAAGACCAAGCATTA+AGG + chr4_3:40409227-40409246 Msa0640920:intron 30.0%
ATAAATCAGTCCTTAATGCT+TGG - chr4_3:40409240-40409259 None:intergenic 30.0%
CTGGCTATTCTATAATTTCA+TGG + chr4_3:40409540-40409559 Msa0640920:intron 30.0%
AATTCCGTTGAAATTGACAA+CGG + chr4_3:40409655-40409674 Msa0640920:CDS 30.0%
! TTTTCCGTTGTCAATTTCAA+CGG - chr4_3:40409662-40409681 None:intergenic 30.0%
CAAAATGAGTTTGACAATGA+TGG + chr4_3:40409685-40409704 Msa0640920:CDS 30.0%
TGAAGTAGAAGGAGAATAAT+GGG - chr4_3:40409764-40409783 None:intergenic 30.0%
! TTTTGCTTAGAATTTGGGTA+GGG + chr4_3:40410037-40410056 Msa0640920:intron 30.0%
CTTACAAACCAGTTTCATAA+GGG - chr4_3:40410071-40410090 None:intergenic 30.0%
TCTTACAAACCAGTTTCATA+AGG - chr4_3:40410072-40410091 None:intergenic 30.0%
!! TTAAGAGTACCACATTAGAT+GGG - chr4_3:40410139-40410158 None:intergenic 30.0%
CTCTGATACCAACTTAAATT+TGG + chr4_3:40410241-40410260 Msa0640920:intron 30.0%
!! CATACAAGTCAGTTTTGTAA+GGG - chr4_3:40410283-40410302 None:intergenic 30.0%
! CTGTAATGCCTGATTTTTAA+GGG - chr4_3:40410402-40410421 None:intergenic 30.0%
! ACTGTAATGCCTGATTTTTA+AGG - chr4_3:40410403-40410422 None:intergenic 30.0%
TTAAAAATCAGGCATTACAG+TGG + chr4_3:40410402-40410421 Msa0640920:intron 30.0%
CAAATCAGGAAAATAAACCT+TGG - chr4_3:40410450-40410469 None:intergenic 30.0%
CAACAAATCTAACCAAATGT+GGG + chr4_3:40410582-40410601 Msa0640920:intron 30.0%
AGCCAAAATATTAAAGAGAC+AGG + chr4_3:40411127-40411146 Msa0640920:CDS 30.0%
! CTCCTGTCTCTTTAATATTT+TGG - chr4_3:40411132-40411151 None:intergenic 30.0%
CAAAATATTAAAGAGACAGG+AGG + chr4_3:40411130-40411149 Msa0640920:CDS 30.0%
!!! CCCTTTTAATTTCCATTAGA+TGG - chr4_3:40411217-40411236 None:intergenic 30.0%
AAATGACGGTTTAGATATCT+TGG + chr4_3:40411267-40411286 Msa0640920:intron 30.0%
AATGACGGTTTAGATATCTT+GGG + chr4_3:40411268-40411287 Msa0640920:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr4_3:40411600-40411619 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr4_3:40411751-40411770 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG - chr4_3:40411786-40411805 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr4_3:40411790-40411809 Msa0640920:intron 30.0%
TCTTTGATAGAACATTATGG+CGG + chr4_3:40411793-40411812 Msa0640920:intron 30.0%
AATTGCAAATTTCAAAGAGG+AGG + chr4_3:40412013-40412032 Msa0640920:intron 30.0%
!! GGTTGGTTACATAATGTTTT+AGG + chr4_3:40412057-40412076 Msa0640920:intron 30.0%
!!! ATAATGTTTTAGGGAAAGGT+TGG + chr4_3:40412067-40412086 Msa0640920:intron 30.0%
!!! TAATGTTTTAGGGAAAGGTT+GGG + chr4_3:40412068-40412087 Msa0640920:intron 30.0%
AATTTGAAAATGAACTGCAG+AGG + chr4_3:40412326-40412345 Msa0640920:intron 30.0%
GATGATATTTGTGAAGCATA+TGG + chr4_3:40412533-40412552 Msa0640920:intron 30.0%
AATTTCAAAATGATCCCTCA+GGG - chr4_3:40412706-40412725 None:intergenic 30.0%
AAATTTCAAAATGATCCCTC+AGG - chr4_3:40412707-40412726 None:intergenic 30.0%
! TCTATGGAATTACAAGCTTT+TGG - chr4_3:40412753-40412772 None:intergenic 30.0%
!!! GCATTAGATTTTGGTTTAAC+AGG - chr4_3:40413377-40413396 None:intergenic 30.0%
!!! TTTTGAGTTGGTTTCTTCAA+CGG - chr4_3:40413414-40413433 None:intergenic 30.0%
AAGATCTCAAAGTAATCCAA+AGG + chr4_3:40413445-40413464 Msa0640920:CDS 30.0%
AAACTCACAAGTAGATAAAC+CGG + chr4_3:40413472-40413491 Msa0640920:CDS 30.0%
AATTGGAAAGTGATTCTTTG+CGG - chr4_3:40413644-40413663 None:intergenic 30.0%
TCATGGTTATAAGATTTGTC+AGG + chr4_3:40414154-40414173 Msa0640920:three_prime_UTR 30.0%
ACTTGGCAATAGCAATAAAA+CGG - chr4_3:40414289-40414308 None:intergenic 30.0%
TAAGAAAACACCTTTCAACT+TGG - chr4_3:40414306-40414325 None:intergenic 30.0%
CCTGTGATTATTAGATGATT+CGG + chr4_3:40414435-40414454 Msa0640920:three_prime_UTR 30.0%
TATAGATCCAGAGATGAGAA+AGG - chr4_3:40407543-40407562 None:intergenic 35.0%
GCATACCATACAGAAACAAT+TGG - chr4_3:40407836-40407855 None:intergenic 35.0%
TACTAGACAGTTATGAAGCA+CGG - chr4_3:40408085-40408104 None:intergenic 35.0%
!! TTAGTGGTTAGTTTGTTAGG+CGG + chr4_3:40408137-40408156 Msa0640920:intron 35.0%
TATACGATTTCGGTGGTTTA+AGG + chr4_3:40408304-40408323 Msa0640920:intron 35.0%
ATCTTCATAGTACTAGAGCA+TGG - chr4_3:40408387-40408406 None:intergenic 35.0%
AGCTTAGTCATAGTACTAAG+AGG - chr4_3:40408453-40408472 None:intergenic 35.0%
!! CGAATTGAACTTTGAGGTAT+GGG - chr4_3:40408567-40408586 None:intergenic 35.0%
CCATACCTCAAAGTTCAATT+CGG + chr4_3:40408565-40408584 Msa0640920:intron 35.0%
ATGAACCGAATTGAACTTTG+AGG - chr4_3:40408573-40408592 None:intergenic 35.0%
!!! AGTTAATTTTTTGGCGGCAT+GGG - chr4_3:40408904-40408923 None:intergenic 35.0%
TATAAACCAAGCAAGGTGAA+CGG - chr4_3:40408957-40408976 None:intergenic 35.0%
TCAGGAATATAAACCAAGCA+AGG - chr4_3:40408964-40408983 None:intergenic 35.0%
TAGTGAGAACTTAACAACGT+TGG - chr4_3:40409115-40409134 None:intergenic 35.0%
GTTGTTAAGTTCTCACTACA+AGG + chr4_3:40409117-40409136 Msa0640920:intron 35.0%
TCAACTCTATGTTCTGCTAT+CGG + chr4_3:40409186-40409205 Msa0640920:intron 35.0%
GTGAAGTAGAAGGAGAATAA+TGG - chr4_3:40409765-40409784 None:intergenic 35.0%
!! TGTACTTGTTGTGAAGTAGA+AGG - chr4_3:40409775-40409794 None:intergenic 35.0%
TTCTACTTCACAACAAGTAC+AGG + chr4_3:40409774-40409793 Msa0640920:CDS 35.0%
! GTGATTTGATGATTATGTGC+AGG - chr4_3:40409802-40409821 None:intergenic 35.0%
! CTTTTGCTTAGAATTTGGGT+AGG + chr4_3:40410036-40410055 Msa0640920:intron 35.0%
TTTGCTTAGAATTTGGGTAG+GGG + chr4_3:40410038-40410057 Msa0640920:intron 35.0%
GTTAACTACCCTTATGAAAC+TGG + chr4_3:40410060-40410079 Msa0640920:intron 35.0%
!! ACTGGTTTGTAAGATGATGA+CGG + chr4_3:40410078-40410097 Msa0640920:intron 35.0%
!! GTTAAGAGTACCACATTAGA+TGG - chr4_3:40410140-40410159 None:intergenic 35.0%
GTTGCAACCCAAATTTAAGT+TGG - chr4_3:40410252-40410271 None:intergenic 35.0%
!! ACTTAAATTTGGGTTGCAAC+TGG + chr4_3:40410252-40410271 Msa0640920:intron 35.0%
!! CCATACAAGTCAGTTTTGTA+AGG - chr4_3:40410284-40410303 None:intergenic 35.0%
!! CCTTACAAAACTGACTTGTA+TGG + chr4_3:40410281-40410300 Msa0640920:intron 35.0%
! CAAATGGGTTTATAAGTGGT+GGG - chr4_3:40410316-40410335 None:intergenic 35.0%
ACCACTTATAAACCCATTTG+CGG + chr4_3:40410316-40410335 Msa0640920:intron 35.0%
TCCTTAACACTTCCATCAAT+GGG + chr4_3:40410362-40410381 Msa0640920:intron 35.0%
GCAACAAATCTAACCAAATG+TGG + chr4_3:40410581-40410600 Msa0640920:intron 35.0%
TCACAAAATAGACCCACATT+TGG - chr4_3:40410597-40410616 None:intergenic 35.0%
! GTGGGTCTATTTTGTGAATT+AGG + chr4_3:40410600-40410619 Msa0640920:intron 35.0%
! TCTATTTTGTGAATTAGGCC+AGG + chr4_3:40410605-40410624 Msa0640920:intron 35.0%
ACATGACACAAGTGATCAAA+AGG - chr4_3:40410985-40411004 None:intergenic 35.0%
GTGTATTTCTCGTACTTGTT+TGG + chr4_3:40411058-40411077 Msa0640920:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+CGG - chr4_3:40411295-40411314 None:intergenic 35.0%
TACATCATCGTATTCAAGCT+GGG + chr4_3:40411328-40411347 Msa0640920:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr4_3:40411393-40411412 Msa0640920:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr4_3:40411402-40411421 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr4_3:40411406-40411425 Msa0640920:intron 35.0%
AGACTAGACATGATAGGATT+AGG + chr4_3:40411541-40411560 Msa0640920:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr4_3:40411593-40411612 Msa0640920:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr4_3:40411613-40411632 Msa0640920:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr4_3:40411618-40411637 Msa0640920:intron 35.0%
TTGATCTACTCTTCTTACCA+CGG - chr4_3:40411670-40411689 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG + chr4_3:40411671-40411690 Msa0640920:intron 35.0%
AAGAAGAGTAGATCAAATGG+CGG + chr4_3:40411674-40411693 Msa0640920:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr4_3:40411758-40411777 Msa0640920:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr4_3:40411770-40411789 Msa0640920:intron 35.0%
TATCATTAGTCCTTCTCATC+AGG + chr4_3:40411918-40411937 Msa0640920:intron 35.0%
TAATTACTTACATCTCACGG+TGG - chr4_3:40411961-40411980 None:intergenic 35.0%
AGGAGGTGGTTGATTAATTT+AGG + chr4_3:40412030-40412049 Msa0640920:intron 35.0%
GGAGGTGGTTGATTAATTTA+GGG + chr4_3:40412031-40412050 Msa0640920:intron 35.0%
TGGTTGATTAATTTAGGGAC+TGG + chr4_3:40412036-40412055 Msa0640920:intron 35.0%
! TGATTAATTTAGGGACTGGT+TGG + chr4_3:40412040-40412059 Msa0640920:intron 35.0%
!!! AATGTTTTAGGGAAAGGTTG+GGG + chr4_3:40412069-40412088 Msa0640920:intron 35.0%
TAAACAGAAGCTTCCAATGA+TGG - chr4_3:40412179-40412198 None:intergenic 35.0%
AATTAGAGCTCAATAGCAAC+TGG - chr4_3:40412223-40412242 None:intergenic 35.0%
ATTGACAAGAATTTGCATGC+AGG - chr4_3:40412305-40412324 None:intergenic 35.0%
TCAAAAATCACTGCAAGTGA+AGG - chr4_3:40412355-40412374 None:intergenic 35.0%
!!! GTCCCTAATATTTTAGCAGT+CGG + chr4_3:40412579-40412598 Msa0640920:intron 35.0%
!!! TCCCTAATATTTTAGCAGTC+GGG + chr4_3:40412580-40412599 Msa0640920:intron 35.0%
ACCCGACTGCTAAAATATTA+GGG - chr4_3:40412584-40412603 None:intergenic 35.0%
TACCCGACTGCTAAAATATT+AGG - chr4_3:40412585-40412604 None:intergenic 35.0%
!!! AATATTTTAGCAGTCGGGTA+TGG + chr4_3:40412585-40412604 Msa0640920:intron 35.0%
CAAAGGGAATTATATGACCA+AGG - chr4_3:40412655-40412674 None:intergenic 35.0%
TAAGGGAATAACAACTGACA+GGG - chr4_3:40412930-40412949 None:intergenic 35.0%
ATAAGGGAATAACAACTGAC+AGG - chr4_3:40412931-40412950 None:intergenic 35.0%
ACACAACACATTGTTTCCTT+TGG + chr4_3:40412962-40412981 Msa0640920:intron 35.0%
AGGTTCAAATCCTGAAGAAA+CGG - chr4_3:40413063-40413082 None:intergenic 35.0%
TTGAACCTGATAAAAGCAGT+TGG + chr4_3:40413075-40413094 Msa0640920:CDS 35.0%
TGAACCTGATAAAAGCAGTT+GGG + chr4_3:40413076-40413095 Msa0640920:CDS 35.0%
CTTGACATTAATACGAAGGA+TGG + chr4_3:40413152-40413171 Msa0640920:CDS 35.0%
GGTAGACGAAAATGATGTTA+TGG + chr4_3:40413181-40413200 Msa0640920:CDS 35.0%
GACGAAAATGATGTTATGGA+TGG + chr4_3:40413185-40413204 Msa0640920:CDS 35.0%
GATGTTATGGATGGTAGAAA+TGG + chr4_3:40413194-40413213 Msa0640920:CDS 35.0%
ACAACGCTTGGATGAATATT+TGG - chr4_3:40413263-40413282 None:intergenic 35.0%
!! TTTGAGTTGGTTTCTTCAAC+GGG - chr4_3:40413413-40413432 None:intergenic 35.0%
GAAGAAACCAACTCAAAATC+TGG + chr4_3:40413416-40413435 Msa0640920:CDS 35.0%
!! TTGAACTCCAGATTTTGAGT+TGG - chr4_3:40413426-40413445 None:intergenic 35.0%
ATTGGAAAGTGATTCTTTGC+GGG - chr4_3:40413643-40413662 None:intergenic 35.0%
ACAGTTTCCTTGTAAGTTAG+CGG + chr4_3:40413721-40413740 Msa0640920:intron 35.0%
!!! TCTTGTATTTTAGCAGGTGT+TGG + chr4_3:40413821-40413840 Msa0640920:intron 35.0%
GTTAGATCTGGTAGGATATT+TGG - chr4_3:40413864-40413883 None:intergenic 35.0%
AGCTTAGGTTTATCCCTTAT+AGG - chr4_3:40413914-40413933 None:intergenic 35.0%
TGTGGTTTGATTGTTGAGAT+TGG + chr4_3:40414122-40414141 Msa0640920:three_prime_UTR 35.0%
! TTTGATTGTTGAGATTGGCT+TGG + chr4_3:40414127-40414146 Msa0640920:three_prime_UTR 35.0%
!! TTGATTGTTGAGATTGGCTT+GGG + chr4_3:40414128-40414147 Msa0640920:three_prime_UTR 35.0%
GTTGTGAGCTATGTATAATG+CGG + chr4_3:40414216-40414235 Msa0640920:three_prime_UTR 35.0%
! ATTGCTATTGCCAAGTTGAA+AGG + chr4_3:40414293-40414312 Msa0640920:three_prime_UTR 35.0%
AAGATGAGAATGACACATTG+TGG + chr4_3:40414371-40414390 Msa0640920:three_prime_UTR 35.0%
CCGAATCATCTAATAATCAC+AGG - chr4_3:40414438-40414457 None:intergenic 35.0%
CTAAGCTAAGCTGTAGAACT+TGG + chr4_3:40407351-40407370 Msa0640920:five_prime_UTR 40.0%
AAGCTGTAGAACTTGGATGA+TGG + chr4_3:40407358-40407377 Msa0640920:five_prime_UTR 40.0%
AGCTGTAGAACTTGGATGAT+GGG + chr4_3:40407359-40407378 Msa0640920:five_prime_UTR 40.0%
!! CTTTTAGGAAGAAAATGGGC+AGG - chr4_3:40407573-40407592 None:intergenic 40.0%
GAAACTGCCTCCACAAAAAA+TGG - chr4_3:40407895-40407914 None:intergenic 40.0%
!! TAGTGGTTAGTTTGTTAGGC+GGG + chr4_3:40408138-40408157 Msa0640920:intron 40.0%
TACACTGTATACGATTTCGG+TGG + chr4_3:40408297-40408316 Msa0640920:intron 40.0%
TTTCGGTGGTTTAAGGATTG+AGG + chr4_3:40408311-40408330 Msa0640920:intron 40.0%
!! CCGAATTGAACTTTGAGGTA+TGG - chr4_3:40408568-40408587 None:intergenic 40.0%
TGCATTATGATCGACTGCTT+TGG + chr4_3:40408613-40408632 Msa0640920:intron 40.0%
ATTGCAATCTAGCACAAACC+TGG - chr4_3:40408660-40408679 None:intergenic 40.0%
AGGTTTGTGCTAGATTGCAA+TGG + chr4_3:40408659-40408678 Msa0640920:intron 40.0%
GGTTTGTGCTAGATTGCAAT+GGG + chr4_3:40408660-40408679 Msa0640920:intron 40.0%
!! AAGTGGATTAGAGCATTGGT+TGG + chr4_3:40408693-40408712 Msa0640920:CDS 40.0%
AAAGCGTGAATCCTTAGAGA+AGG + chr4_3:40408731-40408750 Msa0640920:CDS 40.0%
CACATTTCCATCCTTCTCTA+AGG - chr4_3:40408745-40408764 None:intergenic 40.0%
!!! GAGTTAATTTTTTGGCGGCA+TGG - chr4_3:40408905-40408924 None:intergenic 40.0%
ACACACTTCCTTTGGATTTC+AGG - chr4_3:40408982-40409001 None:intergenic 40.0%
CAACGTTGGACCAAAATTTC+AGG - chr4_3:40409101-40409120 None:intergenic 40.0%
GCTGTTATCAACCTTCAGAA+TGG + chr4_3:40409139-40409158 Msa0640920:intron 40.0%
ACCTTCAGAATGGTAAACAC+TGG + chr4_3:40409149-40409168 Msa0640920:intron 40.0%
! AATGGTAAACACTGGCTATC+TGG + chr4_3:40409157-40409176 Msa0640920:intron 40.0%
!!! GTGAATGACGAGAGTGTTTT+TGG + chr4_3:40409392-40409411 Msa0640920:intron 40.0%
CTGCTTGACAAACTTCTTTC+TGG + chr4_3:40409521-40409540 Msa0640920:intron 40.0%
GCATGATCTACATCTCCAAT+AGG - chr4_3:40409718-40409737 None:intergenic 40.0%
ATGGGCTTCAAGGTTTGATT+GGG - chr4_3:40409746-40409765 None:intergenic 40.0%
! AATGGGCTTCAAGGTTTGAT+TGG - chr4_3:40409747-40409766 None:intergenic 40.0%
!! AAGGAGAATAATGGGCTTCA+AGG - chr4_3:40409756-40409775 None:intergenic 40.0%
ATCAAATCACGAGCGAAGAA+TGG + chr4_3:40409812-40409831 Msa0640920:CDS 40.0%
TCAAATCACGAGCGAAGAAT+GGG + chr4_3:40409813-40409832 Msa0640920:CDS 40.0%
GTACCACATTAGATGGGATA+AGG - chr4_3:40410133-40410152 None:intergenic 40.0%
! TGCTCTAGATGTTAAGTCCT+AGG - chr4_3:40410170-40410189 None:intergenic 40.0%
TACTATCTATCGGACCATTC+GGG - chr4_3:40410196-40410215 None:intergenic 40.0%
CTACTATCTATCGGACCATT+CGG - chr4_3:40410197-40410216 None:intergenic 40.0%
! GCAAATGGGTTTATAAGTGG+TGG - chr4_3:40410317-40410336 None:intergenic 40.0%
CCACTTATAAACCCATTTGC+GGG + chr4_3:40410317-40410336 Msa0640920:intron 40.0%
CTCCTTAACACTTCCATCAA+TGG + chr4_3:40410361-40410380 Msa0640920:intron 40.0%
!! TCCCATTGATGGAAGTGTTA+AGG - chr4_3:40410366-40410385 None:intergenic 40.0%
!! ACTACGAGCTTTGAAAGGAT+TGG + chr4_3:40410633-40410652 Msa0640920:CDS 40.0%
!! GAGCTTTGAAAGGATTGGTA+AGG + chr4_3:40410638-40410657 Msa0640920:CDS 40.0%
!! CAGCTTGTTTTCTTACTGCA+TGG - chr4_3:40410684-40410703 None:intergenic 40.0%
TCACCAAAGCTTGCATACAA+CGG - chr4_3:40410717-40410736 None:intergenic 40.0%
TTCTCGTACTTGTTTGGTAC+AGG + chr4_3:40411064-40411083 Msa0640920:intron 40.0%
GTACATCATCGTATTCAAGC+TGG + chr4_3:40411327-40411346 Msa0640920:intron 40.0%
GTGGTAAGACTAGACATGAT+AGG + chr4_3:40411535-40411554 Msa0640920:intron 40.0%
TGACATCATTAGAGAGAGAG+TGG + chr4_3:40411566-40411585 Msa0640920:intron 40.0%
GACATCATTAGAGAGAGAGT+GGG + chr4_3:40411567-40411586 Msa0640920:intron 40.0%
ACATCATTAGAGAGAGAGTG+GGG + chr4_3:40411568-40411587 Msa0640920:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr4_3:40411699-40411718 Msa0640920:intron 40.0%
TGCAAATTTCAAAGAGGAGG+TGG + chr4_3:40412016-40412035 Msa0640920:intron 40.0%
!!! ATGTTTTAGGGAAAGGTTGG+GGG + chr4_3:40412070-40412089 Msa0640920:intron 40.0%
GTTCTACGATCATCCATCAT+TGG + chr4_3:40412163-40412182 Msa0640920:intron 40.0%
! TCGATCGCCAATTTTGTCTA+TGG - chr4_3:40412769-40412788 None:intergenic 40.0%
GAACCTGATAAAAGCAGTTG+GGG + chr4_3:40413077-40413096 Msa0640920:CDS 40.0%
GTTGGAATTGGTTGGAAAGA+TGG + chr4_3:40413099-40413118 Msa0640920:CDS 40.0%
GAATTGGTTGGAAAGATGGA+TGG + chr4_3:40413103-40413122 Msa0640920:CDS 40.0%
TCAAGAAAACGATTCTCCCA+AGG - chr4_3:40413137-40413156 None:intergenic 40.0%
TAATACGAAGGATGGAGTGA+AGG + chr4_3:40413160-40413179 Msa0640920:CDS 40.0%
GTGTTAGTAGACTTGAACTG+AGG - chr4_3:40413227-40413246 None:intergenic 40.0%
ACTTGTGAGTTTCTCTCCTT+TGG - chr4_3:40413464-40413483 None:intergenic 40.0%
!!! AGAGATAATCGCTTTTTCGC+CGG - chr4_3:40413494-40413513 None:intergenic 40.0%
AGAACAAACTCACCATGGTT+GGG - chr4_3:40413518-40413537 None:intergenic 40.0%
GAAAGAGAACAAACTCACCA+TGG - chr4_3:40413523-40413542 None:intergenic 40.0%
CAGTTTCCTTGTAAGTTAGC+GGG + chr4_3:40413722-40413741 Msa0640920:intron 40.0%
TCTTATCCCGCTAACTTACA+AGG - chr4_3:40413731-40413750 None:intergenic 40.0%
!!! ATTTTAGCAGGTGTTGGTTC+CGG + chr4_3:40413827-40413846 Msa0640920:intron 40.0%
CTACCAGATCTAACGTGAAA+GGG + chr4_3:40413870-40413889 Msa0640920:CDS 40.0%
TAGCACGCAAAAGCCTATAA+GGG + chr4_3:40413898-40413917 Msa0640920:CDS 40.0%
AGGGATAAACCTAAGCTCAA+TGG + chr4_3:40413917-40413936 Msa0640920:CDS 40.0%
GATAAACCTAAGCTCAATGG+AGG + chr4_3:40413920-40413939 Msa0640920:CDS 40.0%
AACTACTCCATTCTCCATTG+AGG + chr4_3:40413996-40414015 Msa0640920:three_prime_UTR 40.0%
AAACAGACAAATGTCACCTG+AGG - chr4_3:40414023-40414042 None:intergenic 40.0%
ACATCAGCGTCTTCATAGAA+GGG - chr4_3:40414105-40414124 None:intergenic 40.0%
GGCAATAGCAATAAAACGGA+AGG - chr4_3:40414285-40414304 None:intergenic 40.0%
TTACTTGCCAATACTGTACG+AGG - chr4_3:40414402-40414421 None:intergenic 40.0%
!! TGGATGATGGGAACTCAACT+CGG + chr4_3:40407371-40407390 Msa0640920:five_prime_UTR 45.0%
AGCTTCACCTTTCTCATCTC+TGG + chr4_3:40407533-40407552 Msa0640920:intron 45.0%
AAGGTGTATGTTGGAGGTCA+GGG - chr4_3:40408191-40408210 None:intergenic 45.0%
! AAAGGTGTATGTTGGAGGTC+AGG - chr4_3:40408192-40408211 None:intergenic 45.0%
ACCTCCAACATACACCTTTG+CGG + chr4_3:40408193-40408212 Msa0640920:intron 45.0%
!! GACTGCTTTGGCATTGACTT+GGG + chr4_3:40408625-40408644 Msa0640920:intron 45.0%
! TGACTTGGGAGAAAATTGCC+AGG + chr4_3:40408639-40408658 Msa0640920:intron 45.0%
ATGCTCTAATCCACTTGCCT+GGG - chr4_3:40408689-40408708 None:intergenic 45.0%
AATGCTCTAATCCACTTGCC+TGG - chr4_3:40408690-40408709 None:intergenic 45.0%
!! AGGCAAGTGGATTAGAGCAT+TGG + chr4_3:40408689-40408708 Msa0640920:CDS 45.0%
CGTGAATCCTTAGAGAAGGA+TGG + chr4_3:40408735-40408754 Msa0640920:CDS 45.0%
GACAGAGAGAGATTGAGAGA+GGG - chr4_3:40408775-40408794 None:intergenic 45.0%
AGACAGAGAGAGATTGAGAG+AGG - chr4_3:40408776-40408795 None:intergenic 45.0%
!!! TAATTTTTTGGCGGCATGGG+AGG - chr4_3:40408901-40408920 None:intergenic 45.0%
TTTCTACCGTTCACCTTGCT+TGG + chr4_3:40408948-40408967 Msa0640920:intron 45.0%
GCCAGTGTTTACCATTCTGA+AGG - chr4_3:40409153-40409172 None:intergenic 45.0%
! AGGCTAGCAAGTTTTGCCAT+CGG + chr4_3:40409626-40409645 Msa0640920:CDS 45.0%
CAACGGAATTCTTTCTCCGA+TGG - chr4_3:40409645-40409664 None:intergenic 45.0%
!! AATGATGGTGCTGCACCTAT+TGG + chr4_3:40409700-40409719 Msa0640920:CDS 45.0%
TGGGCTTCAAGGTTTGATTG+GGG - chr4_3:40409745-40409764 None:intergenic 45.0%
TGCATTCAAACAGCGTTTCG+TGG + chr4_3:40409844-40409863 Msa0640920:CDS 45.0%
AACAGCGTTTCGTGGATTTC+TGG + chr4_3:40409852-40409871 Msa0640920:CDS 45.0%
! AGGCCTTATCCCATCTAATG+TGG + chr4_3:40410127-40410146 Msa0640920:intron 45.0%
TACTCTTAACACACACGCCT+AGG + chr4_3:40410150-40410169 Msa0640920:intron 45.0%
CGAATGGTCCGATAGATAGT+AGG + chr4_3:40410195-40410214 Msa0640920:intron 45.0%
ATGGTCCGATAGATAGTAGG+TGG + chr4_3:40410198-40410217 Msa0640920:intron 45.0%
TTGGGCCACCTACTATCTAT+CGG - chr4_3:40410206-40410225 None:intergenic 45.0%
TAGGTGGCCCAACAAATCAT+GGG + chr4_3:40410214-40410233 Msa0640920:intron 45.0%
!! GAGCCTACCCATGATTTGTT+GGG - chr4_3:40410224-40410243 None:intergenic 45.0%
! AGAGCCTACCCATGATTTGT+TGG - chr4_3:40410225-40410244 None:intergenic 45.0%
! CCCGCAAATGGGTTTATAAG+TGG - chr4_3:40410320-40410339 None:intergenic 45.0%
ATGAGATAAGGCCCGCAAAT+GGG - chr4_3:40410331-40410350 None:intergenic 45.0%
AGTCCACCTTGGATGAGATA+AGG - chr4_3:40410343-40410362 None:intergenic 45.0%
AAGTGTTAAGGAGTCCACCT+TGG - chr4_3:40410354-40410373 None:intergenic 45.0%
!! AGAGCACTACGAGCTTTGAA+AGG + chr4_3:40410628-40410647 Msa0640920:CDS 45.0%
TACTGCATGGCCTCTTACAA+GGG - chr4_3:40410671-40410690 None:intergenic 45.0%
TTACTGCATGGCCTCTTACA+AGG - chr4_3:40410672-40410691 None:intergenic 45.0%
TCTCCGTTGTATGCAAGCTT+TGG + chr4_3:40410711-40410730 Msa0640920:CDS 45.0%
CGTACTTGTTTGGTACAGGA+AGG + chr4_3:40411068-40411087 Msa0640920:intron 45.0%
CTTGTTTGGTACAGGAAGGT+TGG + chr4_3:40411072-40411091 Msa0640920:intron 45.0%
ATGAGCTAGAGCATATGCCA+TGG - chr4_3:40411177-40411196 None:intergenic 45.0%
GGGTCCGTAGTACAAAATGA+CGG + chr4_3:40411288-40411307 Msa0640920:intron 45.0%
ATCATCGTATTCAAGCTGGG+TGG + chr4_3:40411331-40411350 Msa0640920:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr4_3:40411340-40411359 Msa0640920:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + chr4_3:40411354-40411373 Msa0640920:intron 45.0%
CTTATCGCACAAAACACCTG+AGG - chr4_3:40411373-40411392 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + chr4_3:40411440-40411459 Msa0640920:intron 45.0%
TCCGTACCATACAACATTGC+CGG - chr4_3:40411444-40411463 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr4_3:40411448-40411467 Msa0640920:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr4_3:40411449-40411468 Msa0640920:intron 45.0%
CGCTTACTTTACTCTCGTGT+TGG - chr4_3:40411485-40411504 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG + chr4_3:40411488-40411507 Msa0640920:intron 45.0%
CATCATTAGAGAGAGAGTGG+GGG + chr4_3:40411569-40411588 Msa0640920:intron 45.0%
GGTTTGGACATGTAGAGAGA+AGG + chr4_3:40411634-40411653 Msa0640920:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG - chr4_3:40411840-40411859 None:intergenic 45.0%
CAATCAAGGACCTGATGAGA+AGG - chr4_3:40411931-40411950 None:intergenic 45.0%
ACGGTGGAGCATAACAATCA+AGG - chr4_3:40411945-40411964 None:intergenic 45.0%
!!! TGTTTTAGGGAAAGGTTGGG+GGG + chr4_3:40412071-40412090 Msa0640920:intron 45.0%
ACTATGTAAGGGGAAAACCG+TGG + chr4_3:40412264-40412283 Msa0640920:intron 45.0%
CTATGTAAGGGGAAAACCGT+GGG + chr4_3:40412265-40412284 Msa0640920:intron 45.0%
TATGTAAGGGGAAAACCGTG+GGG + chr4_3:40412266-40412285 Msa0640920:intron 45.0%
GTCGATGAGATTGACGCAAA+GGG - chr4_3:40412671-40412690 None:intergenic 45.0%
AGTCGATGAGATTGACGCAA+AGG - chr4_3:40412672-40412691 None:intergenic 45.0%
!! ACTAAGTTGATCGACCCTGA+GGG + chr4_3:40412689-40412708 Msa0640920:intron 45.0%
! TCCTCTTTTCCACTTTGCAG+TGG + chr4_3:40413015-40413034 Msa0640920:intron 45.0%
!! CAACCCCAACTGCTTTTATC+AGG - chr4_3:40413083-40413102 None:intergenic 45.0%
CTGATAAAAGCAGTTGGGGT+TGG + chr4_3:40413081-40413100 Msa0640920:CDS 45.0%
AAAGCAGTTGGGGTTGGAAT+TGG + chr4_3:40413087-40413106 Msa0640920:CDS 45.0%
! GTTTTGTGACTGACAACGCT+TGG - chr4_3:40413275-40413294 None:intergenic 45.0%
AGCGTTGTCAGTCACAAAAC+CGG + chr4_3:40413275-40413294 Msa0640920:CDS 45.0%
CACAGCCATCAGAAAGTGAA+GGG - chr4_3:40413301-40413320 None:intergenic 45.0%
TCACAGCCATCAGAAAGTGA+AGG - chr4_3:40413302-40413321 None:intergenic 45.0%
CGATTATCTCTTCCCAACCA+TGG + chr4_3:40413503-40413522 Msa0640920:CDS 45.0%
GAGAACAAACTCACCATGGT+TGG - chr4_3:40413519-40413538 None:intergenic 45.0%
!!! TTTTAGCAGGTGTTGGTTCC+GGG + chr4_3:40413828-40413847 Msa0640920:intron 45.0%
ATATTTGGCTGTTTGAGCCC+CGG - chr4_3:40413849-40413868 None:intergenic 45.0%
CCTTTCACGTTAGATCTGGT+AGG - chr4_3:40413872-40413891 None:intergenic 45.0%
CCTACCAGATCTAACGTGAA+AGG + chr4_3:40413869-40413888 Msa0640920:CDS 45.0%
TGTCCCTTTCACGTTAGATC+TGG - chr4_3:40413876-40413895 None:intergenic 45.0%
GTAGCACGCAAAAGCCTATA+AGG + chr4_3:40413897-40413916 Msa0640920:CDS 45.0%
AAACCTAAGCTCAATGGAGG+AGG + chr4_3:40413923-40413942 Msa0640920:CDS 45.0%
AACCTAAGCTCAATGGAGGA+GGG + chr4_3:40413924-40413943 Msa0640920:CDS 45.0%
ACATGCAATGTGTGACGCAA+AGG + chr4_3:40414045-40414064 Msa0640920:three_prime_UTR 45.0%
CATGCAATGTGTGACGCAAA+GGG + chr4_3:40414046-40414065 Msa0640920:three_prime_UTR 45.0%
AGGGAGGAACATGTACATTG+TGG - chr4_3:40414086-40414105 None:intergenic 45.0%
CACATCAGCGTCTTCATAGA+AGG - chr4_3:40414106-40414125 None:intergenic 45.0%
CTTCTATGAAGACGCTGATG+TGG + chr4_3:40414104-40414123 Msa0640920:three_prime_UTR 45.0%
AGCAATAAAACGGAAGGCAG+TGG - chr4_3:40414279-40414298 None:intergenic 45.0%
GGAGATTCCTCGTACAGTAT+TGG + chr4_3:40414392-40414411 Msa0640920:three_prime_UTR 45.0%
!!! ATTTATTAACATATATTTTT+AGG + chr4_3:40410107-40410126 Msa0640920:intron 5.0%
! CATAGGTGCCATGTCAGTGT+CGG + chr4_3:40408021-40408040 Msa0640920:intron 50.0%
GATTAGGTGTGTCCTGGTGT+CGG - chr4_3:40408052-40408071 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr4_3:40408074-40408093 None:intergenic 50.0%
!! TGGTTAGTTTGTTAGGCGGG+AGG + chr4_3:40408141-40408160 Msa0640920:intron 50.0%
CCTCCAACATACACCTTTGC+GGG + chr4_3:40408194-40408213 Msa0640920:intron 50.0%
CTCCAACATACACCTTTGCG+GGG + chr4_3:40408195-40408214 Msa0640920:intron 50.0%
!! CGACTGCTTTGGCATTGACT+TGG + chr4_3:40408624-40408643 Msa0640920:intron 50.0%
TAGATTGCAATGGGTGTCCC+AGG + chr4_3:40408669-40408688 Msa0640920:exon 50.0%
! CATCTAGAGCATGACCCGAA+TGG + chr4_3:40410179-40410198 Msa0640920:intron 50.0%
GTAGGTGGCCCAACAAATCA+TGG + chr4_3:40410213-40410232 Msa0640920:intron 50.0%
TGGCCCAACAAATCATGGGT+AGG + chr4_3:40410218-40410237 Msa0640920:intron 50.0%
GATGAGATAAGGCCCGCAAA+TGG - chr4_3:40410332-40410351 None:intergenic 50.0%
AGGCTTCAAGCCCTTGTAAG+AGG + chr4_3:40410658-40410677 Msa0640920:CDS 50.0%
! GCAAGCTTTGGTGAGAGTTC+AGG + chr4_3:40410723-40410742 Msa0640920:CDS 50.0%
TGAGAGTTCAGGCTCGTGTT+CGG + chr4_3:40410734-40410753 Msa0640920:CDS 50.0%
AAGGCGTGTTCGCTTGTCAT+TGG + chr4_3:40410759-40410778 Msa0640920:CDS 50.0%
!! GAAGGTTGGTGTGACAGTGT+GGG + chr4_3:40411086-40411105 Msa0640920:CDS 50.0%
AGCAAAACGTGAGAGAGCCA+TGG + chr4_3:40411157-40411176 Msa0640920:CDS 50.0%
! GGCATATGCTCTAGCTCATC+AGG + chr4_3:40411178-40411197 Msa0640920:CDS 50.0%
GTCAGACCGGCAATGTTGTA+TGG + chr4_3:40411435-40411454 Msa0640920:intron 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG + chr4_3:40411496-40411515 Msa0640920:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr4_3:40411516-40411535 Msa0640920:intron 50.0%
TCTTCTTACCACGGCGTCTA+CGG - chr4_3:40411661-40411680 None:intergenic 50.0%
! AGATCAAATGGCGGAGAGTC+AGG + chr4_3:40411683-40411702 Msa0640920:intron 50.0%
GCGGAGAGTCAGGTTAAAAG+AGG + chr4_3:40411693-40411712 Msa0640920:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr4_3:40411835-40411854 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG - chr4_3:40411839-40411858 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG - chr4_3:40411841-40411860 None:intergenic 50.0%
ATGTAAGGGGAAAACCGTGG+GGG + chr4_3:40412267-40412286 Msa0640920:intron 50.0%
AAACCGTGGGGGAACTGTAT+TGG + chr4_3:40412278-40412297 Msa0640920:intron 50.0%
!! GACTAAGTTGATCGACCCTG+AGG + chr4_3:40412688-40412707 Msa0640920:intron 50.0%
GCCACTGCAAAGTGGAAAAG+AGG - chr4_3:40413019-40413038 None:intergenic 50.0%
! CTTTTCCACTTTGCAGTGGC+AGG + chr4_3:40413019-40413038 Msa0640920:intron 50.0%
CAGTTGGGGTTGGAATTGGT+TGG + chr4_3:40413091-40413110 Msa0640920:CDS 50.0%
ATGGATGGCTGTACGTCCTT+GGG + chr4_3:40413118-40413137 Msa0640920:CDS 50.0%
TCTTCCACTAGCAAGTCAGC+AGG + chr4_3:40413326-40413345 Msa0640920:CDS 50.0%
!! CAAACCTGCTGACTTGCTAG+TGG - chr4_3:40413333-40413352 None:intergenic 50.0%
GATGATGTTAGCACTCGCAG+AGG - chr4_3:40413577-40413596 None:intergenic 50.0%
!! TTTAGCAGGTGTTGGTTCCG+GGG + chr4_3:40413829-40413848 Msa0640920:intron 50.0%
ACCTAAGCTCAATGGAGGAG+GGG + chr4_3:40413925-40413944 Msa0640920:CDS 50.0%
CTGAGGACCTCAATGGAGAA+TGG - chr4_3:40414006-40414025 None:intergenic 50.0%
CATTCTCCATTGAGGTCCTC+AGG + chr4_3:40414004-40414023 Msa0640920:three_prime_UTR 50.0%
ATGTCACCTGAGGACCTCAA+TGG - chr4_3:40414013-40414032 None:intergenic 50.0%
ATGTGTGACGCAAAGGGTTG+AGG + chr4_3:40414052-40414071 Msa0640920:three_prime_UTR 50.0%
TGTGTGACGCAAAGGGTTGA+GGG + chr4_3:40414053-40414072 Msa0640920:three_prime_UTR 50.0%
TCAGCGTCTTCATAGAAGGG+AGG - chr4_3:40414102-40414121 None:intergenic 50.0%
!! GAGATTGGCTTGGGCTTTCA+TGG + chr4_3:40414137-40414156 Msa0640920:three_prime_UTR 50.0%
CGGACAAACCGACACTGACA+TGG - chr4_3:40408032-40408051 None:intergenic 55.0%
ACCAGGACACACCTAATCCG+AGG + chr4_3:40408054-40408073 Msa0640920:intron 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG - chr4_3:40408058-40408077 None:intergenic 55.0%
! CCCGCAAAGGTGTATGTTGG+AGG - chr4_3:40408197-40408216 None:intergenic 55.0%
! GTCCCCGCAAAGGTGTATGT+TGG - chr4_3:40408200-40408219 None:intergenic 55.0%
! TGCGGGCCTTATCTCATCCA+AGG + chr4_3:40410334-40410353 Msa0640920:intron 55.0%
! GGGCCTTATCTCATCCAAGG+TGG + chr4_3:40410337-40410356 Msa0640920:intron 55.0%
CAAAGCTCGTAGTGCTCTCC+TGG - chr4_3:40410626-40410645 None:intergenic 55.0%
GAGAGTTCAGGCTCGTGTTC+GGG + chr4_3:40410735-40410754 Msa0640920:CDS 55.0%
!! GGAAGGTTGGTGTGACAGTG+TGG + chr4_3:40411085-40411104 Msa0640920:intron 55.0%
CTATCGGACAGCAGTCAGAC+CGG + chr4_3:40411422-40411441 Msa0640920:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr4_3:40411508-40411527 Msa0640920:intron 55.0%
CTTCTTACCACGGCGTCTAC+GGG - chr4_3:40411660-40411679 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr4_3:40411827-40411846 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr4_3:40411826-40411845 Msa0640920:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr4_3:40411827-40411846 Msa0640920:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_3:40411833-40411852 Msa0640920:intron 55.0%
GGACCAATACAGTTCCCCCA+CGG - chr4_3:40412284-40412303 None:intergenic 55.0%
GATGGATGGCTGTACGTCCT+TGG + chr4_3:40413117-40413136 Msa0640920:CDS 55.0%
ACCGGCCCTTCACTTTCTGA+TGG + chr4_3:40413293-40413312 Msa0640920:CDS 55.0%
GCCATCAGAAAGTGAAGGGC+CGG - chr4_3:40413297-40413316 None:intergenic 55.0%
TCCCCTCCTCCATTGAGCTT+AGG - chr4_3:40413929-40413948 None:intergenic 55.0%
GTGTGACGCAAAGGGTTGAG+GGG + chr4_3:40414054-40414073 Msa0640920:three_prime_UTR 55.0%
!! GTGTCGGTTTGTCCGACACC+AGG + chr4_3:40408037-40408056 Msa0640920:intron 60.0%
GCACGGACACTCCTCGGATT+AGG - chr4_3:40408068-40408087 None:intergenic 60.0%
TACACCTTTGCGGGGACTCG+TGG + chr4_3:40408203-40408222 Msa0640920:intron 60.0%
ACACCTTTGCGGGGACTCGT+GGG + chr4_3:40408204-40408223 Msa0640920:intron 60.0%
CAATGGGTGTCCCAGGCAAG+TGG + chr4_3:40408676-40408695 Msa0640920:exon 60.0%
TTCAGGCTCGTGTTCGGGCA+AGG + chr4_3:40410740-40410759 Msa0640920:CDS 60.0%
TCCACTTTGCAGTGGCAGGC+AGG + chr4_3:40413023-40413042 Msa0640920:intron 60.0%
TCCTGCCTGCCACTGCAAAG+TGG - chr4_3:40413027-40413046 None:intergenic 60.0%
TGCAGTGGCAGGCAGGATCA+AGG + chr4_3:40413030-40413049 Msa0640920:intron 60.0%
AGGCAGCAGGCCGTTTCTTC+AGG + chr4_3:40413050-40413069 Msa0640920:CDS 60.0%
CACCTTTGCGGGGACTCGTG+GGG + chr4_3:40408205-40408224 Msa0640920:intron 65.0%
ATCCCCACGAGTCCCCGCAA+AGG - chr4_3:40408210-40408229 None:intergenic 65.0%
TTTGCGGGGACTCGTGGGGA+TGG + chr4_3:40408209-40408228 Msa0640920:intron 65.0%
GCAGGCAGGATCAAGGCAGC+AGG + chr4_3:40413037-40413056 Msa0640920:CDS 65.0%
GAGAAGGCCCGTAGACGCCG+TGG + chr4_3:40411650-40411669 Msa0640920:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40407246 40414490 40407246 ID=Msa0640920;Name=Msa0640920
chr4_3 mRNA 40407246 40414490 40407246 ID=Msa0640920-mRNA-1;Parent=Msa0640920;Name=Msa0640920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=212|1|1|1|0.66|0.71|7|508|436
chr4_3 exon 40407246 40407440 40407246 ID=Msa0640920-mRNA-1:exon:9096;Parent=Msa0640920-mRNA-1
chr4_3 exon 40408661 40408761 40408661 ID=Msa0640920-mRNA-1:exon:9097;Parent=Msa0640920-mRNA-1
chr4_3 exon 40409625 40409873 40409625 ID=Msa0640920-mRNA-1:exon:9098;Parent=Msa0640920-mRNA-1
chr4_3 exon 40410622 40410849 40410622 ID=Msa0640920-mRNA-1:exon:9099;Parent=Msa0640920-mRNA-1
chr4_3 exon 40411086 40411199 40411086 ID=Msa0640920-mRNA-1:exon:9100;Parent=Msa0640920-mRNA-1
chr4_3 exon 40413035 40413524 40413035 ID=Msa0640920-mRNA-1:exon:9101;Parent=Msa0640920-mRNA-1
chr4_3 exon 40413837 40414490 40413837 ID=Msa0640920-mRNA-1:exon:9102;Parent=Msa0640920-mRNA-1
chr4_3 five_prime_UTR 40407246 40407440 40407246 ID=Msa0640920-mRNA-1:five_prime_utr;Parent=Msa0640920-mRNA-1
chr4_3 five_prime_UTR 40408661 40408677 40408661 ID=Msa0640920-mRNA-1:five_prime_utr;Parent=Msa0640920-mRNA-1
chr4_3 CDS 40408678 40408761 40408678 ID=Msa0640920-mRNA-1:cds;Parent=Msa0640920-mRNA-1
chr4_3 CDS 40409625 40409873 40409625 ID=Msa0640920-mRNA-1:cds;Parent=Msa0640920-mRNA-1
chr4_3 CDS 40410622 40410849 40410622 ID=Msa0640920-mRNA-1:cds;Parent=Msa0640920-mRNA-1
chr4_3 CDS 40411086 40411199 40411086 ID=Msa0640920-mRNA-1:cds;Parent=Msa0640920-mRNA-1
chr4_3 CDS 40413035 40413524 40413035 ID=Msa0640920-mRNA-1:cds;Parent=Msa0640920-mRNA-1
chr4_3 CDS 40413837 40413982 40413837 ID=Msa0640920-mRNA-1:cds;Parent=Msa0640920-mRNA-1
chr4_3 three_prime_UTR 40413983 40414490 40413983 ID=Msa0640920-mRNA-1:three_prime_utr;Parent=Msa0640920-mRNA-1
Gene Sequence

>Msa0640920

ATGGGTGTCCCAGGCAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCGTGAATCCTTAGAGAAGGATGGAAATCAGGCTAGCAAGTTTTGCCATCGGAGAAAGAATTCCGTTGAAATTGACAACGGAAAACTTCAAAATGAGTTTGACAATGATGGTGCTGCACCTATTGGAGATGTAGATCATGCGAATCCCCAATCAAACCTTGAAGCCCATTATTCTCCTTCTACTTCACAACAAGTACAGGATCCTGCACATAATCATCAAATCACGAGCGAAGAATGGGCAGCAATATGCATTCAAACAGCGTTTCGTGGATTTCTGGCCAGGAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAAGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGAGTTCAGGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGTCATTGGAAAGTCAAACAGAACAACAGAAACTTCAGCAACAGCTTGTAAACGAAGCTCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATATTAAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGGCAGCAGGCCGTTTCTTCAGGATTTGAACCTGATAAAAGCAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGTCCTTGGGAGAATCGTTTTCTTGACATTAATACGAAGGATGGAGTGAAGGTAGACGAAAATGATGTTATGGATGGTAGAAATGGAATCAGACCTCAGTTCAAGTCTACTAACACAAAATCGAATCTGCCAAATATTCATCCAAGCGTTGTCAGTCACAAAACCGGCCCTTCACTTTCTGATGGCTGTGATTCTTCTTCCACTAGCAAGTCAGCAGGTTTGCTAGAGACATCGAATACACAACCTGTTAAACCAAAATCTAATGCAAATGTTCAAAATCCCGTTGAAGAAACCAACTCAAAATCTGGAGTTCAAAGATCTCAAAGTAATCCAAAGGAGAGAAACTCACAAGTAGATAAACCGGCGAAAAAGCGATTATCTCTTCCCAACCATGGTGTTGGTTCCGGGGCTCAAACAGCCAAATATCCTACCAGATCTAACGTGAAAGGGACACGTAGCACGCAAAAGCCTATAAGGGATAAACCTAAGCTCAATGGAGGAGGGGATGTGAATCTTACAAAATCAGTTCCACTTGTGTAA
Protein sequence

>Msa0640920

MGVPGKWIRALVGLKKSEKRESLEKDGNQASKFCHRRKNSVEIDNGKLQNEFDNDGAAPIGDVDHANPQSNLEAHYSPSTSQQVQDPAHNHQITSEEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLSLESQTEQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINTKDGVKVDENDVMDGRNGIRPQFKSTNTKSNLPNIHPSVVSHKTGPSLSDGCDSSSTSKSAGLLETSNTQPVKPKSNANVQNPVEETNSKSGVQRSQSNPKERNSQVDKPAKKRLSLPNHGVGSGAQTAKYPTRSNVKGTRSTQKPIRDKPKLNGGGDVNLTKSVPLV*