AlfalfaGEDB | Msa1189070

M. sativa cultivar zhongmu-4 / Msa1189070

KEGG: K12735
GO: GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00160.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189070	XP_013445134.1	97.025	605	15	1	1	602	1	605	0.0	1191

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189070	sp\|Q6Q151\|CYP59_ARATH	75.227	440	94	5	1	434	1	431	0.0	673

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189070	A0A072U025	97.025	605	15	1	1	602	1	605	0.0	1191

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa1189070	0.825741	3.973434e-54	-8.615850e-47
Msa0001450	Msa1189070	0.835363	1.752769e-56	-8.615850e-47
Msa0001940	Msa1189070	0.811279	7.581056e-51	-8.615850e-47
Msa0003700	Msa1189070	0.873101	1.908211e-67	-8.615850e-47
Msa0003720	Msa1189070	0.822850	1.899790e-53	-8.615850e-47
Msa0003890	Msa1189070	0.858863	6.152578e-63	-8.615850e-47
Msa0005890	Msa1189070	0.815885	7.349817e-52	-8.615850e-47
Msa0006110	Msa1189070	0.832904	7.243165e-56	-8.615850e-47
Msa0006380	Msa1189070	0.812720	3.678578e-51	-8.615850e-47
Msa0007480	Msa1189070	0.816214	6.204955e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189070	MtrunA17_Chr8g0357591	97.025	605	15	1	1	602	1	605	0.0	1191
Msa1189070	MtrunA17_Chr6g0484281	96.020	603	21	1	1	600	1	603	0.0	1176
Msa1189070	MtrunA17_Chr7g0266721	41.772	158	83	2	3	158	12	162	1.31e-34	128
Msa1189070	MtrunA17_Chr8g0351571	39.394	165	91	2	1	163	1	158	3.16e-32	122
Msa1189070	MtrunA17_Chr5g0401141	39.157	166	92	2	3	166	347	505	8.46e-31	127
Msa1189070	MtrunA17_Chr2g0321111	39.623	159	87	2	2	158	463	614	3.26e-30	125
Msa1189070	MtrunA17_Chr2g0288371	41.317	167	87	5	3	165	15	174	6.34e-26	111
Msa1189070	MtrunA17_Chr7g0260441	37.179	156	75	5	12	153	23	169	2.58e-22	101
Msa1189070	MtrunA17_Chr3g0145501	39.157	166	79	6	9	161	25	181	1.60e-21	92.8
Msa1189070	MtrunA17_Chr7g0274841	34.810	158	81	5	10	154	18	166	5.48e-20	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1189070	AT1G53720.1	75.227	440	94	5	1	434	1	431	0.0	673
Msa1189070	AT1G53720.2	84.570	337	49	1	1	334	1	337	0.0	603
Msa1189070	AT1G53780.2	49.107	224	91	4	78	298	4	207	9.16e-50	182
Msa1189070	AT1G53780.3	46.602	206	87	4	96	298	1	186	1.57e-39	153
Msa1189070	AT1G53780.1	46.602	206	87	4	96	298	1	186	1.57e-39	153
Msa1189070	AT1G53780.4	46.602	206	87	4	96	298	1	186	1.57e-39	153
Msa1189070	AT2G36130.1	43.396	159	81	3	3	159	12	163	1.56e-37	137
Msa1189070	AT1G01940.1	39.394	165	91	2	1	163	1	158	5.87e-32	121
Msa1189070	AT3G44600.1	40.881	159	85	2	2	158	477	628	2.57e-30	126
Msa1189070	AT5G67530.1	38.994	159	88	2	7	163	350	501	2.20e-28	120

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Find 163 sgRNAs with CRISPR-Local

Find 574 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAAGCCCGGATGATG+GGG	0.591110	8_1:+30376446	Msa1189070:CDS
AAACCCAGGAGAACTTGAAG+AGG	0.634019	8_1:+30373802	Msa1189070:CDS
AAACTACCGCCCAAATGGCA+TGG	0.619820	8_1:+30376972	Msa1189070:three_prime_UTR
AAACTTACCTGTAGTAGCAT+AGG	0.573597	8_1:+30376845	Msa1189070:three_prime_UTR
AAAGACATAGAAAGGCATAT+GGG	0.577796	8_1:+30376126	Msa1189070:CDS
AACATAGAAGGACATGATAC+CGG	0.564254	8_1:+30376523	Msa1189070:exon
AACGGGGTGGAGATAAAGCA+AGG	0.636526	8_1:+30375751	Msa1189070:CDS
AACTATCCTCATCCTCTAGA+AGG	0.416633	8_1:+30376553	Msa1189070:three_prime_UTR
AACTGTGGTCACAATACATG+CGG	0.633456	8_1:+30375478	Msa1189070:CDS
AAGATGAATCTAACGGTAGT+TGG	0.540734	8_1:-30368940	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTACTTGTAGATAGAATCAC+CGG	-	chr8_1:30369251-30369270	None:intergenic	30.0%
TGCAGTAGAAATTAGAAAAG+AGG	+	chr8_1:30369442-30369461	Msa1189070:intron	30.0%
GCAGTAGAAATTAGAAAAGA+GGG	+	chr8_1:30369443-30369462	Msa1189070:intron	30.0%
TAGAAAAGAGGGTTGAAAAT+AGG	+	chr8_1:30369454-30369473	Msa1189070:intron	30.0%
TTGTTTATGATAGAACACTC+TGG	+	chr8_1:30369617-30369636	Msa1189070:intron	30.0%
GTCATAAAGGATTAGATTCT+AGG	+	chr8_1:30369912-30369931	Msa1189070:intron	30.0%
TTTACCGTCAATGTTAGAAT+TGG	-	chr8_1:30369939-30369958	None:intergenic	30.0%
ATATGAGGTTTCTCAATGAA+TGG	+	chr8_1:30370102-30370121	Msa1189070:intron	30.0%
ACGGATTTAACTCATCTATT+AGG	+	chr8_1:30370162-30370181	Msa1189070:intron	30.0%
GCATGAGAAATAATCTTGAT+TGG	+	chr8_1:30370376-30370395	Msa1189070:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	30368883	30377012	30368883	ID=Msa1189070;Name=Msa1189070
chr8_1	mRNA	30368883	30377012	30368883	ID=Msa1189070-mRNA-1;Parent=Msa1189070;Name=Msa1189070-mRNA-1;_AED=0.09;_eAED=0.09;_QI=94\|1\|1\|1\|1\|1\|14\|473\|602
chr8_1	exon	30368883	30369074	30368883	ID=Msa1189070-mRNA-1:exon:10549;Parent=Msa1189070-mRNA-1
chr8_1	exon	30369162	30369266	30369162	ID=Msa1189070-mRNA-1:exon:10550;Parent=Msa1189070-mRNA-1
chr8_1	exon	30370452	30370569	30370452	ID=Msa1189070-mRNA-1:exon:10551;Parent=Msa1189070-mRNA-1
chr8_1	exon	30370730	30370771	30370730	ID=Msa1189070-mRNA-1:exon:10552;Parent=Msa1189070-mRNA-1
chr8_1	exon	30372441	30372532	30372441	ID=Msa1189070-mRNA-1:exon:10553;Parent=Msa1189070-mRNA-1
chr8_1	exon	30372638	30372737	30372638	ID=Msa1189070-mRNA-1:exon:10554;Parent=Msa1189070-mRNA-1
chr8_1	exon	30373749	30373871	30373749	ID=Msa1189070-mRNA-1:exon:10555;Parent=Msa1189070-mRNA-1
chr8_1	exon	30373961	30374038	30373961	ID=Msa1189070-mRNA-1:exon:10556;Parent=Msa1189070-mRNA-1
chr8_1	exon	30374160	30374206	30374160	ID=Msa1189070-mRNA-1:exon:10557;Parent=Msa1189070-mRNA-1
chr8_1	exon	30374294	30374349	30374294	ID=Msa1189070-mRNA-1:exon:10558;Parent=Msa1189070-mRNA-1
chr8_1	exon	30374896	30374936	30374896	ID=Msa1189070-mRNA-1:exon:10559;Parent=Msa1189070-mRNA-1
chr8_1	exon	30375417	30375513	30375417	ID=Msa1189070-mRNA-1:exon:10560;Parent=Msa1189070-mRNA-1
chr8_1	exon	30375643	30375772	30375643	ID=Msa1189070-mRNA-1:exon:10561;Parent=Msa1189070-mRNA-1
chr8_1	exon	30375858	30377012	30375858	ID=Msa1189070-mRNA-1:exon:10562;Parent=Msa1189070-mRNA-1
chr8_1	five_prime_UTR	30368883	30368976	30368883	ID=Msa1189070-mRNA-1:five_prime_utr;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30368977	30369074	30368977	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30369162	30369266	30369162	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30370452	30370569	30370452	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30370730	30370771	30370730	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30372441	30372532	30372441	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30372638	30372737	30372638	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30373749	30373871	30373749	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30373961	30374038	30373961	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30374160	30374206	30374160	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30374294	30374349	30374294	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30374896	30374936	30374896	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30375417	30375513	30375417	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30375643	30375772	30375643	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	CDS	30375858	30376539	30375858	ID=Msa1189070-mRNA-1:cds;Parent=Msa1189070-mRNA-1
chr8_1	three_prime_UTR	30376540	30377012	30376540	ID=Msa1189070-mRNA-1:three_prime_utr;Parent=Msa1189070-mRNA-1

Gene Sequence

>Msa1189070

ATGTCAGTACTGATGGTGACGAGTTTAGGCGACATGGTTATCGACTTACACACACAAAAATGTCCCTTAACCTGCAAAAACTTCTTGAAGCTTTGCAAGATCAAGTATTACAATGGATGTTTATTTCATACTGTTCAAAAGGATTTTACTGCTCAGACTGGTGATCCTACTGGAACTGGCACTGCCGGTGATTCTATCTACAAGTTTCTTTATGGTGACCAAGCTCGGTTTTTCAATGATGAGATTCATATTGATCTAAAGCATTCTAAGACTGGAACTGTTGCCATGGCTAGTGCAGGAGAGAATTTGAATGCTTCACAGTTCTATATAACTCTGCGTGATTACCTTGATGGAAAGCACACAGTTTTTGGTGAGGTGGCTGAAGGATTTGAGACTTTGACTAGAATTAATGAGGCTTATGCCGATGGAAAGGGAAGACCATTCAAAAATATCCGAATCAAGCACACTTACATCCTGGAAGATCCTTTTGATGATCCTCCTCAGCTACCTGAGTTCATTCCTGAAGCTTCACCAGAAGGAAAACCTAAAGACGAGGTTGACGATGAAGTCCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGGAGAACTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTGCTTGAGAGTATTGGGGATATTCCTGATGCTGAGGTTAAACCTCCAGATAATGTACTTTTTGTCTGTAAATTGAATCCGGTTACTGAGGATGAGGACTTGCACACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATTCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTTATAGAGTTCGAAGACAAACTGGCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTTTCAAAACTGTGGTCACAATACATGCGGAAAGATAATAAGGGTGGTGGTTGCTTCAAATGTGGTTCCACAGATCATATTGCTAAGGATTGTACTGGAGATGCTACAATGAAACAACCCACAAAATTTATCATGAAGGACAATAATGGCCAACGGGGTGGAGATAAAGCAAGATACGAAATGGTTTTTGATGGAGATAACACGGAAAGTCCAAAGAGAGAAACGAAACACCAGAGATATGAAAGGGATGACGGATATGATAAAAAAGGTCGGAAGGAAAATTTTAAAGATGATAGTCATAGAGGTCGTAGGGATCAGGAGATGGAAGGCTCGAATAACAGAGATAGGCACCGCGATAGAAGCAGAGGGCTTGAAGGAAATGGAGATGATAAAGCGCGACTGGAAAAAGGTGCAAGAGATCCGGATTTTCATGCCGAGAAGAAAGACATAGAAAGGCATATGGGAAGGAGACGTCGAGATGATGACTACCGGCGGAAAGATGAGCTAGACTCGAGAAAAAGAGACTTAGATGATAGATACACAGAAAGACGGGCTAGTCGAGATGATAGGAGAAAAACAGATGACAGCCATTTGGATAGGAGGGATGACAGAGATTATAGGAAGAGAACTGAAGACAGTGGAAGGCAAGATGTGAAGGTTGATTCTGGAAGAAGAAAACGAAGCCCAGATGGCGATGATTACAAACGTAGAAGGAATGATGAGGATTACAGAGAAGATGTGAAGATTGATTCCGGACGAAGAAAACGAAGCCCGGATGATGGGGATTACAAACGTGGAAGGGACCATGAGGATTACAGACATAGGAGGGAAGGTCGTGAACATAGAAGGACATGA

Protein sequence

>Msa1189070

MSVLMVTSLGDMVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTAGDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDYLDGKHTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPFDDPPQLPEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPGELEEVIRSKEAHSRAVVLESIGDIPDAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLACEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYMRKDNKGGGCFKCGSTDHIAKDCTGDATMKQPTKFIMKDNNGQRGGDKARYEMVFDGDNTESPKRETKHQRYERDDGYDKKGRKENFKDDSHRGRRDQEMEGSNNRDRHRDRSRGLEGNGDDKARLEKGARDPDFHAEKKDIERHMGRRRRDDDYRRKDELDSRKRDLDDRYTERRASRDDRRKTDDSHLDRRDDRDYRKRTEDSGRQDVKVDSGRRKRSPDGDDYKRRRNDEDYREDVKIDSGRRKRSPDDGDYKRGRDHEDYRHRREGREHRRT*