AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802090 MtrunA17_Chr5g0409351 95.440 307 14 0 1 307 1 307 0.0 596
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802090 AT4G19140.1 45.051 293 142 5 16 296 14 299 4.30e-78 240

Find 110 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATACATGACTTCCTTAT+TGG 0.150167 5_3:+16267263 None:intergenic
CAATATTATAGCACTTATTT+TGG 0.172852 5_3:-16267359 Msa0802090:exon
GCTTGGTTAGTTATTGTATA+TGG 0.178907 5_3:-16267417 Msa0802090:CDS
CTTTATTGCAGACCTAATTT+TGG 0.188664 5_3:-16271021 Msa0802090:CDS
GGAAGGATTGGTTAGGGTTT+AGG 0.192315 5_3:+16273231 None:intergenic
CAAAATAAGTGCTATAATAT+TGG 0.198528 5_3:+16267360 None:intergenic
TGAATACCGTGTATTATAAT+TGG 0.221311 5_3:-16267314 Msa0802090:three_prime_UTR
GTTGACACAGTACAAATTTA+AGG 0.236503 5_3:-16270989 Msa0802090:intron
ATAATACTTGGTGCCATATC+TGG 0.249243 5_3:-16267597 Msa0802090:CDS
GGGATCTTGTTGGTTGGATT+GGG 0.262211 5_3:+16273192 None:intergenic
GAAGGATTGGTTAGGGTTTA+GGG 0.283832 5_3:+16273232 None:intergenic
CCATGGAGACGATAAATTAT+TGG 0.284691 5_3:-16267662 Msa0802090:CDS
ATCTTGTTGGTTGGATTGGG+AGG 0.290630 5_3:+16273195 None:intergenic
AATATTATGTTCATTAATAC+TGG 0.293319 5_3:-16267159 Msa0802090:three_prime_UTR
GGGGATCTTGTTGGTTGGAT+TGG 0.305160 5_3:+16273191 None:intergenic
TTATATCAAGACAATCTCTT+TGG 0.318819 5_3:-16269795 Msa0802090:CDS
TGTGGCCGTGTTTGGATTGA+TGG 0.338693 5_3:-16267037 Msa0802090:three_prime_UTR
TTTCTCCGATCACCGGATTC+CGG 0.342347 5_3:-16273288 Msa0802090:five_prime_UTR
AAAATAAGTGCTATAATATT+GGG 0.348237 5_3:+16267361 None:intergenic
TGGTCATATAAAATAAGATT+TGG 0.355264 5_3:+16273351 None:intergenic
AACCATGCAGCACCAAAATT+AGG 0.365787 5_3:+16271009 None:intergenic
TCACTAAACTTTGTCGTAAG+AGG 0.368398 5_3:-16266831 Msa0802090:three_prime_UTR
CTTGGTTAGTTATTGTATAT+GGG 0.370201 5_3:-16267416 Msa0802090:CDS
GGTTAGGGTTTAGGGGTTGC+CGG 0.376820 5_3:+16273240 None:intergenic
GTTGCCGTTATGATTACTAC+TGG 0.380014 5_3:-16271776 Msa0802090:CDS
TTAATGAGACTTATGATTGC+TGG 0.386518 5_3:-16269845 Msa0802090:CDS
GACTGAAGAGAAACGGGGTT+TGG 0.387314 5_3:+16273028 None:intergenic
CTACTGGGCTTCAGTATTCA+AGG 0.394452 5_3:-16271760 Msa0802090:intron
AGAAGCAAACCCAGAAGAAA+AGG 0.396236 5_3:+16273076 None:intergenic
TTGTCCCATCTGCACCAATA+AGG 0.397845 5_3:-16267277 Msa0802090:three_prime_UTR
AAAGCCATTGTGGCCGTGTT+TGG 0.401112 5_3:-16267045 Msa0802090:three_prime_UTR
CCATGGAGGAAGGATTGGTT+AGG 0.401156 5_3:+16273224 None:intergenic
TTAGGGGTTGCCGGAATTTG+AGG 0.404649 5_3:+16273249 None:intergenic
ACTGAAGAGAAACGGGGTTT+GGG 0.407147 5_3:+16273029 None:intergenic
CAGTGTGACTGAAGAGAAAC+GGG 0.408072 5_3:+16273022 None:intergenic
GAGGAACATAATAAAAGTTA+TGG 0.413188 5_3:+16267554 None:intergenic
GCGTCAATACCCTCAAATTC+CGG 0.416091 5_3:-16273259 Msa0802090:five_prime_UTR
CACAAAGCCACGCCGTATGA+TGG 0.436486 5_3:+16266940 None:intergenic
TAGTTATTGTATATGGGAAA+AGG 0.436936 5_3:-16267410 Msa0802090:CDS
GGTGAAGTGCTATGACCCTT+TGG 0.439623 5_3:-16267338 Msa0802090:three_prime_UTR
ATGACGCCACCGTTCCTTTG+AGG 0.439744 5_3:+16273163 None:intergenic
GACTCGTCATAGTTTGTAAC+GGG 0.443985 5_3:+16267097 None:intergenic
TGTATTATAATTGGAGTAGA+TGG 0.447598 5_3:-16267305 Msa0802090:three_prime_UTR
GTCTTGATATAAATGTACTT+TGG 0.456814 5_3:+16269806 None:intergenic
TGACGCCACCGTTCCTTTGA+GGG 0.463309 5_3:+16273164 None:intergenic
GACTTCCTTATTGGTGCAGA+TGG 0.464801 5_3:+16267272 None:intergenic
CTTAATAAACATTTCTGTTG+TGG 0.467528 5_3:+16266903 None:intergenic
GGGGTTTGGGACAGAGAAAT+CGG 0.468687 5_3:+16273042 None:intergenic
TATGATTGCTGGTACACATC+TGG 0.469215 5_3:-16269834 Msa0802090:CDS
TGGAGGTGGGAAATAATACT+TGG 0.470293 5_3:-16267609 Msa0802090:CDS
TTCATTAATACTGGTTTACA+TGG 0.471998 5_3:-16267150 Msa0802090:three_prime_UTR
TGACGCCGGTCACCGGAATC+CGG 0.475084 5_3:+16273276 None:intergenic
GCAGTGTGACTGAAGAGAAA+CGG 0.476753 5_3:+16273021 None:intergenic
AGATGTTGAGAATCCAGATA+TGG 0.476920 5_3:+16267584 None:intergenic
TAGGGGTTGCCGGAATTTGA+GGG 0.479075 5_3:+16273250 None:intergenic
CCACCGTTCCTTTGAGGGCG+AGG 0.482640 5_3:+16273169 None:intergenic
ATGGATACCGACAAAACATA+TGG 0.483359 5_3:-16273392 None:intergenic
ATGAAGATAGAAGTTGTTTG+AGG 0.483435 5_3:+16267535 None:intergenic
CACCGTTCCTTTGAGGGCGA+GGG 0.485068 5_3:+16273170 None:intergenic
ATTGTATATGGGAAAAGGCT+TGG 0.488823 5_3:-16267405 Msa0802090:CDS
TTCAACATTTCTCCGATCAC+CGG 0.492861 5_3:-16273295 Msa0802090:five_prime_UTR
CGCTTTCGTCATACTCCGAT+GGG 0.494361 5_3:-16273140 Msa0802090:CDS
TCTTGTTGGTTGGATTGGGA+GGG 0.497294 5_3:+16273196 None:intergenic
TCGCTTTCGTCATACTCCGA+TGG 0.502866 5_3:-16273141 Msa0802090:CDS
CATGGAGGAAGGATTGGTTA+GGG 0.505347 5_3:+16273225 None:intergenic
CCAATAATTTATCGTCTCCA+TGG 0.514583 5_3:+16267662 None:intergenic
CAAACCCAGAAGAAAAGGAA+TGG 0.516824 5_3:+16273081 None:intergenic
AGAATCCATGGAGGAAGGAT+TGG 0.520240 5_3:+16273219 None:intergenic
ACAAAGCCACGCCGTATGAT+GGG 0.527712 5_3:+16266941 None:intergenic
AAAAGTATCCATGCTGCAAA+CGG 0.529614 5_3:+16267504 None:intergenic
TAGGTCTGCAATAAAGAGGA+AGG 0.535921 5_3:+16271028 None:intergenic
ACCGTTCCTTTGAGGGCGAG+GGG 0.536382 5_3:+16273171 None:intergenic
TAAAGAGGAAGGGCTTCACT+TGG 0.537829 5_3:+16271039 None:intergenic
TATTGGGAATCTGAAAATCT+CGG 0.538556 5_3:+16267377 None:intergenic
GTTGACCACCTCCCATCATA+CGG 0.547378 5_3:-16266952 Msa0802090:three_prime_UTR
ATTGTTAAATTATAAAGCAA+AGG 0.550872 5_3:-16271832 Msa0802090:CDS
TTGCCGTTATGATTACTACT+GGG 0.554261 5_3:-16271775 Msa0802090:CDS
GGTCACCGGAATCCGGTGAT+CGG 0.561425 5_3:+16273283 None:intergenic
GGATTGGGAGGGAGAATCCA+TGG 0.563538 5_3:+16273207 None:intergenic
ATGGAGAATAAGAAAACGAA+GGG 0.567010 5_3:+16273100 None:intergenic
ACTTCCTTATTGGTGCAGAT+GGG 0.569581 5_3:+16267273 None:intergenic
TACATCGACCGTTTGCAGCA+TGG 0.569673 5_3:-16267512 Msa0802090:CDS
AAATTAGGTCTGCAATAAAG+AGG 0.570499 5_3:+16271024 None:intergenic
TGACTCGTCATAGTTTGTAA+CGG 0.572464 5_3:+16267096 None:intergenic
CCTAACCAATCCTTCCTCCA+TGG 0.572684 5_3:-16273224 Msa0802090:exon
GGACAGAGAAATCGGAAATG+AGG 0.573862 5_3:+16273050 None:intergenic
CACTGCAAAATCGTCTCCAC+CGG 0.574221 5_3:-16273004 Msa0802090:intron
AAGGATTGGTTAGGGTTTAG+GGG 0.576527 5_3:+16273233 None:intergenic
CAATCCAAACACGGCCACAA+TGG 0.590389 5_3:+16267041 None:intergenic
CATACGGCGTGGCTTTGTGA+TGG 0.590696 5_3:-16266936 Msa0802090:three_prime_UTR
CAGTGTTGTAAAAGCCATTG+TGG 0.594467 5_3:-16267055 Msa0802090:three_prime_UTR
GAGGGAGAATCCATGGAGGA+AGG 0.594724 5_3:+16273214 None:intergenic
AATACACGGTATTCAACCAA+AGG 0.596530 5_3:+16267322 None:intergenic
AATGGAGAATAAGAAAACGA+AGG 0.598406 5_3:+16273099 None:intergenic
ATACACGGTATTCAACCAAA+GGG 0.601451 5_3:+16267323 None:intergenic
GAGACAAGTTGCGTTTGCTG+AGG 0.604805 5_3:-16271064 Msa0802090:CDS
GAATTTGAGGGTATTGACGC+CGG 0.617367 5_3:+16273262 None:intergenic
ACATGTGCGCTTGATGAGAA+CGG 0.618805 5_3:+16267467 None:intergenic
CCGTTCCTTTGAGGGCGAGG+GGG 0.622783 5_3:+16273172 None:intergenic
AGGTCTGCAATAAAGAGGAA+GGG 0.628812 5_3:+16271029 None:intergenic
AAGCCCAGTAGTAATCATAA+CGG 0.636251 5_3:+16271772 None:intergenic
TAGTAGACTGCTCATCAGCA+CGG 0.653496 5_3:+16269769 None:intergenic
ATAGAATTGCGATAACCCAT+CGG 0.655797 5_3:+16273125 None:intergenic
AAGCCACGCCGTATGATGGG+AGG 0.666383 5_3:+16266944 None:intergenic
TCATTCCATCAATCCAAACA+CGG 0.674171 5_3:+16267032 None:intergenic
CCTCGCCCTCAAAGGAACGG+TGG 0.677941 5_3:-16273169 Msa0802090:CDS
TCTACTCCAATTATAATACA+CGG 0.711199 5_3:+16267308 None:intergenic
GGAATCTGAAAATCTCGGCG+AGG 0.721383 5_3:+16267382 None:intergenic
TTGGGAGGGAGAATCCATGG+AGG 0.735925 5_3:+16273210 None:intergenic
AGTGTGACTGAAGAGAAACG+GGG 0.814258 5_3:+16273023 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGACAAAAAAAAAAAT+TGG - chr5_3:16271864-16271883 Msa0802090:CDS 10.0%
!!! GGTATTTTTTATTTTTATTT+TGG - chr5_3:16272454-16272473 Msa0802090:intron 10.0%
!!! TGGAATATTTTTTCATTATT+TGG - chr5_3:16267733-16267752 Msa0802090:intron 15.0%
!! ATTGTTAAATTATAAAGCAA+AGG - chr5_3:16268364-16268383 Msa0802090:intron 15.0%
!! TTCCATATTAGTATAATTAA+GGG - chr5_3:16269435-16269454 Msa0802090:intron 15.0%
!! TAAATTGAATAGAAGAAAAA+AGG + chr5_3:16269885-16269904 None:intergenic 15.0%
!!! ATAGGATAAAAAATACATTT+TGG + chr5_3:16271135-16271154 None:intergenic 15.0%
!! ATTAACTGTTATCAAAATAA+TGG - chr5_3:16271610-16271629 Msa0802090:intron 15.0%
!!! TGTTATTTCTAGATTTAAAA+TGG - chr5_3:16271967-16271986 Msa0802090:intron 15.0%
!!! ACATTTTTCTCAAAAATAAT+AGG + chr5_3:16272018-16272037 None:intergenic 15.0%
!!! CTATGAACAATTTATAATTT+TGG + chr5_3:16272380-16272399 None:intergenic 15.0%
!! AAATTATAAATTGTTCATAG+TGG - chr5_3:16272380-16272399 Msa0802090:intron 15.0%
!! AAAATAAGTGCTATAATATT+GGG + chr5_3:16272838-16272857 None:intergenic 15.0%
!!! TTTTTTTCTTAAGTAATAAC+AGG + chr5_3:16272998-16273017 None:intergenic 15.0%
!! AATATTATGTTCATTAATAC+TGG - chr5_3:16273037-16273056 Msa0802090:CDS 15.0%
!! TGGTCATATAAAATAAGATT+TGG + chr5_3:16266848-16266867 None:intergenic 20.0%
!! GAAAAAAATAGAAAACTAAC+CGG + chr5_3:16267214-16267233 None:intergenic 20.0%
!! TACTTACTTAACTAAATCTA+AGG + chr5_3:16267298-16267317 None:intergenic 20.0%
!! TTATAGAAATAGCTAATTCT+TGG - chr5_3:16267605-16267624 Msa0802090:CDS 20.0%
!! TATAGAAATAGCTAATTCTT+GGG - chr5_3:16267606-16267625 Msa0802090:CDS 20.0%
!! ATAAGTTGTTTATTCAAAAC+AGG - chr5_3:16267652-16267671 Msa0802090:CDS 20.0%
!! TAAGTTGTTTATTCAAAACA+GGG - chr5_3:16267653-16267672 Msa0802090:CDS 20.0%
!! AAAATATTCCATGATATTGT+TGG + chr5_3:16267724-16267743 None:intergenic 20.0%
!! ATTCATGATTTATTACACAA+GGG + chr5_3:16267875-16267894 None:intergenic 20.0%
!! TAATTTGAATCTCAATTTAG+AGG - chr5_3:16267941-16267960 Msa0802090:intron 20.0%
!! CATAAAAGATATGAATATCA+TGG + chr5_3:16268146-16268165 None:intergenic 20.0%
!! TATGAGTATTACTAATCAAA+CGG + chr5_3:16268210-16268229 None:intergenic 20.0%
!! AGAATTAACAATACCTAAAT+TGG + chr5_3:16268478-16268497 None:intergenic 20.0%
!! AACAAACAAGTTCATTATAA+AGG - chr5_3:16268602-16268621 Msa0802090:intron 20.0%
!! TAGCTTATTCCAAATAAAAA+TGG - chr5_3:16268829-16268848 Msa0802090:intron 20.0%
!!! ATAGGTTGATAAATGTTATT+TGG + chr5_3:16268948-16268967 None:intergenic 20.0%
!! ATTAATTGGTTGTCATATAT+GGG + chr5_3:16268985-16269004 None:intergenic 20.0%
!! AATTAATTGGTTGTCATATA+TGG + chr5_3:16268986-16269005 None:intergenic 20.0%
!! CTTCCATATTAGTATAATTA+AGG - chr5_3:16269434-16269453 Msa0802090:intron 20.0%
!! AACCCTTAATTATACTAATA+TGG + chr5_3:16269440-16269459 None:intergenic 20.0%
!! AATAGTGATAGAAAAGATTA+TGG + chr5_3:16269582-16269601 None:intergenic 20.0%
!! TCTTTCTCATTTATTATACT+AGG - chr5_3:16270328-16270347 Msa0802090:intron 20.0%
!! AAAATAAACGAACTTAAAGT+TGG + chr5_3:16270637-16270656 None:intergenic 20.0%
!!! TACATTTTGGTTCAAAATTT+TGG + chr5_3:16271122-16271141 None:intergenic 20.0%
!! AATTTGTGTACTGAAAATAT+AGG + chr5_3:16271153-16271172 None:intergenic 20.0%
!!! TTTGAAGCATCAATATTATA+TGG - chr5_3:16271431-16271450 Msa0802090:intron 20.0%
!!! TTTGAAGCATCAATATTATA+TGG - chr5_3:16271431-16271450 Msa0802090:intron 20.0%
!!! ACAAAGTTTGTTTAAAGAAT+GGG + chr5_3:16272211-16272230 None:intergenic 20.0%
!!! AACAAAGTTTGTTTAAAGAA+TGG + chr5_3:16272212-16272231 None:intergenic 20.0%
!! TAATAGGAAGACAAAAATAT+TGG + chr5_3:16272488-16272507 None:intergenic 20.0%
!!! AAATTATTGGTTTTCAGATA+AGG - chr5_3:16272547-16272566 Msa0802090:intron 20.0%
!!! AATTATTGGTTTTCAGATAA+GGG - chr5_3:16272548-16272567 Msa0802090:intron 20.0%
!! CAAAATAAGTGCTATAATAT+TGG + chr5_3:16272839-16272858 None:intergenic 20.0%
!!! CAATATTATAGCACTTATTT+TGG - chr5_3:16272837-16272856 Msa0802090:intron 20.0%
!!! GAGTATAGATATTTTGTTTG+TGG + chr5_3:16266868-16266887 None:intergenic 25.0%
! ATTCATGGTTTATTACACAA+GGG + chr5_3:16267347-16267366 None:intergenic 25.0%
!! ATTACTTACTTTAGCTTCTA+AGG - chr5_3:16267395-16267414 Msa0802090:CDS 25.0%
!!! TTTAGCTTCTAAGGTTAATT+GGG - chr5_3:16267404-16267423 Msa0802090:CDS 25.0%
! GCTTATAGATTATACGAAAA+CGG - chr5_3:16267562-16267581 Msa0802090:CDS 25.0%
! TAAAATGTCCAACAATATCA+TGG - chr5_3:16267713-16267732 Msa0802090:intron 25.0%
! TGTTCAAAACAAAAAAAGTG+TGG - chr5_3:16267779-16267798 Msa0802090:intron 25.0%
!! AAACAAAAAAAGTGTGGATT+TGG - chr5_3:16267785-16267804 Msa0802090:intron 25.0%
! CATTCATGATTTATTACACA+AGG + chr5_3:16267876-16267895 None:intergenic 25.0%
! TGTGTAATAAATCATGAATG+TGG - chr5_3:16267876-16267895 Msa0802090:intron 25.0%
! AATGTGGTTGATCAATTTAT+CGG - chr5_3:16267892-16267911 Msa0802090:intron 25.0%
!!! GCTATTTTGAGTGTTTTTTT+TGG - chr5_3:16268020-16268039 Msa0802090:intron 25.0%
!!! GTCAATTAATTTGTCAGAAA+AGG - chr5_3:16268109-16268128 Msa0802090:intron 25.0%
!! ATCTTTTATGAGCTAATGAT+TGG - chr5_3:16268156-16268175 Msa0802090:intron 25.0%
!!! TTAAGAAGTTTTGAGATGAA+TGG - chr5_3:16268246-16268265 Msa0802090:intron 25.0%
!!! TAAGAAGTTTTGAGATGAAT+GGG - chr5_3:16268247-16268266 Msa0802090:intron 25.0%
!!! CACAATATCATTTTTCTTAC+AGG - chr5_3:16268305-16268324 Msa0802090:intron 25.0%
! TTATAACTTCTTGCCAATTT+AGG - chr5_3:16268462-16268481 Msa0802090:intron 25.0%
!!! ATTCTGCAACCATTTTTATT+TGG + chr5_3:16268841-16268860 None:intergenic 25.0%
!!! TGTATGATTCTGAAACAAAT+AGG + chr5_3:16268908-16268927 None:intergenic 25.0%
! CACAAACTTGCATAATTAAT+TGG + chr5_3:16268999-16269018 None:intergenic 25.0%
! AGTTTGTGTTAGCTAATATA+TGG - chr5_3:16269011-16269030 Msa0802090:intron 25.0%
! GTCTATATAACTATAAACCT+AGG - chr5_3:16269033-16269052 Msa0802090:intron 25.0%
!! ATAAACCTAGGTAATTCTTT+TGG - chr5_3:16269045-16269064 Msa0802090:intron 25.0%
!! TAAACCTAGGTAATTCTTTT+GGG - chr5_3:16269046-16269065 Msa0802090:intron 25.0%
! GTTTATGTTAACATTGTTTC+AGG - chr5_3:16269081-16269100 Msa0802090:intron 25.0%
! ATGCTAAAGTAATATCAAGT+TGG + chr5_3:16269290-16269309 None:intergenic 25.0%
! TTAGATTATCTCTTAAGCTT+AGG - chr5_3:16269353-16269372 Msa0802090:intron 25.0%
! CTTCAGATTCTAATCAAATA+GGG + chr5_3:16269413-16269432 None:intergenic 25.0%
! ACTTCAGATTCTAATCAAAT+AGG + chr5_3:16269414-16269433 None:intergenic 25.0%
! AATACCTTGAATTATGAGTA+GGG + chr5_3:16269498-16269517 None:intergenic 25.0%
! AAATACCTTGAATTATGAGT+AGG + chr5_3:16269499-16269518 None:intergenic 25.0%
!!! CAAATTGGTTTTAGATAAAG+AGG + chr5_3:16269535-16269554 None:intergenic 25.0%
! ATCAATATAAAACTTGGCAA+CGG + chr5_3:16269605-16269624 None:intergenic 25.0%
!! ATTTTGTCTTAGTTGTAGTT+TGG - chr5_3:16269934-16269953 Msa0802090:intron 25.0%
! AAGACTTTGAATTGTGAATA+TGG + chr5_3:16270148-16270167 None:intergenic 25.0%
! AAGTTATAGGCTTTCAAAAA+AGG + chr5_3:16270187-16270206 None:intergenic 25.0%
! GATAACATTACTGAAGTTAT+AGG + chr5_3:16270200-16270219 None:intergenic 25.0%
! GTATGATAACATAATGAATG+AGG + chr5_3:16270231-16270250 None:intergenic 25.0%
! GTCTTGATATAAATGTACTT+TGG + chr5_3:16270393-16270412 None:intergenic 25.0%
! TTATATCAAGACAATCTCTT+TGG - chr5_3:16270401-16270420 Msa0802090:intron 25.0%
!!! TCAAAATTTTGGTTTTGGTT+CGG + chr5_3:16271111-16271130 None:intergenic 25.0%
!!! TTGGTTCAAAATTTTGGTTT+TGG + chr5_3:16271116-16271135 None:intergenic 25.0%
! GTACACAAATTACATTAACA+TGG - chr5_3:16271162-16271181 Msa0802090:intron 25.0%
! AAATTAATACAATGCGCAAA+TGG - chr5_3:16271360-16271379 Msa0802090:intron 25.0%
! GATGCTTCAAAATACAATAT+TGG + chr5_3:16271481-16271500 None:intergenic 25.0%
! CAGTTCAAAAATTAGTGAAA+TGG - chr5_3:16271635-16271654 Msa0802090:intron 25.0%
!!! TGGTTCAGTTAATTTTGATA+TGG - chr5_3:16271655-16271674 Msa0802090:intron 25.0%
!!! CAGTTAATTTTGATATGGTT+CGG - chr5_3:16271660-16271679 Msa0802090:intron 25.0%
!!! TGTCAACTGAACATTTTTTA+CGG + chr5_3:16271908-16271927 None:intergenic 25.0%
!!! GTTGACATCTTTTTTTCAAA+AGG - chr5_3:16271921-16271940 Msa0802090:intron 25.0%
!! GTGAAAATCCCAATTATTTT+TGG - chr5_3:16272036-16272055 Msa0802090:intron 25.0%
! CAGGTTTACCAAAAATAATT+GGG + chr5_3:16272047-16272066 None:intergenic 25.0%
! ACAGGTTTACCAAAAATAAT+TGG + chr5_3:16272048-16272067 None:intergenic 25.0%
! AAATGAAAAGATGTGAGATT+GGG + chr5_3:16272103-16272122 None:intergenic 25.0%
! TAAATGAAAAGATGTGAGAT+TGG + chr5_3:16272104-16272123 None:intergenic 25.0%
! AACAAACTTTGTTGAAAACA+AGG - chr5_3:16272219-16272238 Msa0802090:intron 25.0%
! ATGTACGTGTATAAGTTAAT+AGG + chr5_3:16272504-16272523 None:intergenic 25.0%
! GAGGAACATAATAAAAGTTA+TGG + chr5_3:16272645-16272664 None:intergenic 25.0%
!! CTTGGTTAGTTATTGTATAT+GGG - chr5_3:16272780-16272799 Msa0802090:intron 25.0%
! TAGTTATTGTATATGGGAAA+AGG - chr5_3:16272786-16272805 Msa0802090:intron 25.0%
! TGAATACCGTGTATTATAAT+TGG - chr5_3:16272882-16272901 Msa0802090:intron 25.0%
! TCTACTCCAATTATAATACA+CGG + chr5_3:16272891-16272910 None:intergenic 25.0%
! TGTATTATAATTGGAGTAGA+TGG - chr5_3:16272891-16272910 Msa0802090:intron 25.0%
!! GAAAAAAAAATGCAAGCTTT+TGG - chr5_3:16273010-16273029 Msa0802090:CDS 25.0%
!!! TTCATTAATACTGGTTTACA+TGG - chr5_3:16273046-16273065 Msa0802090:CDS 25.0%
!!! TAAGCTCATTTTTATTTCTG+TGG - chr5_3:16273222-16273241 Msa0802090:exon 25.0%
! CTTAATAAACATTTCTGTTG+TGG + chr5_3:16273296-16273315 None:intergenic 25.0%
ATGGAGAATAAGAAAACGAA+GGG + chr5_3:16267099-16267118 None:intergenic 30.0%
AATGGAGAATAAGAAAACGA+AGG + chr5_3:16267100-16267119 None:intergenic 30.0%
AAAAATAGAAAACTAACCGG+TGG + chr5_3:16267211-16267230 None:intergenic 30.0%
CATTCATGGTTTATTACACA+AGG + chr5_3:16267348-16267367 None:intergenic 30.0%
TGTGTAATAAACCATGAATG+TGG - chr5_3:16267348-16267367 Msa0802090:three_prime_UTR 30.0%
AAACTAATCAACCACATTCA+TGG + chr5_3:16267362-16267381 None:intergenic 30.0%
!! CTTTAGCTTCTAAGGTTAAT+TGG - chr5_3:16267403-16267422 Msa0802090:CDS 30.0%
!! TTAGCTTCTAAGGTTAATTG+GGG - chr5_3:16267405-16267424 Msa0802090:CDS 30.0%
TAAGCACTTGTGATACTATT+TGG - chr5_3:16267466-16267485 Msa0802090:CDS 30.0%
AAGCACTTGTGATACTATTT+GGG - chr5_3:16267467-16267486 Msa0802090:CDS 30.0%
!!! AGAGGAGTTTGTTAAGTTTT+TGG - chr5_3:16267959-16267978 Msa0802090:intron 30.0%
!!! AAGAAGTTTTGAGATGAATG+GGG - chr5_3:16268248-16268267 Msa0802090:intron 30.0%
! TACTTGCTAGAAGAAAAACA+AGG - chr5_3:16268517-16268536 Msa0802090:intron 30.0%
! CCTTTTCATAGTCATTGTTA+AGG + chr5_3:16268571-16268590 None:intergenic 30.0%
CCTTAACAATGACTATGAAA+AGG - chr5_3:16268568-16268587 Msa0802090:intron 30.0%
! AGTTATTTCGTGTATTCAGA+TGG + chr5_3:16268703-16268722 None:intergenic 30.0%
TTAATTTCCGAGAATATGCA+GGG + chr5_3:16268751-16268770 None:intergenic 30.0%
ATTAATTTCCGAGAATATGC+AGG + chr5_3:16268752-16268771 None:intergenic 30.0%
TATGTTAACATTGTTTCAGG+TGG - chr5_3:16269084-16269103 Msa0802090:intron 30.0%
!! GAATACAAAGATCACTTTTC+AGG - chr5_3:16269106-16269125 Msa0802090:intron 30.0%
AAATTAGGTCTGCAATAAAG+AGG + chr5_3:16269175-16269194 None:intergenic 30.0%
! CTTTATTGCAGACCTAATTT+TGG - chr5_3:16269175-16269194 Msa0802090:intron 30.0%
GTTGACACAGTACAAATTTA+AGG - chr5_3:16269207-16269226 Msa0802090:intron 30.0%
! ACACAGTACAAATTTAAGGT+GGG - chr5_3:16269211-16269230 Msa0802090:intron 30.0%
! ATCTAAAACCAATTTGAGCA+TGG - chr5_3:16269539-16269558 Msa0802090:intron 30.0%
TAGAAAAGATTATGGAGGAT+GGG + chr5_3:16269574-16269593 None:intergenic 30.0%
ATAGAAAAGATTATGGAGGA+TGG + chr5_3:16269575-16269594 None:intergenic 30.0%
AGTGATAGAAAAGATTATGG+AGG + chr5_3:16269579-16269598 None:intergenic 30.0%
!! TGCCAAGTTTTATATTGATC+TGG - chr5_3:16269606-16269625 Msa0802090:intron 30.0%
GTCCAGATCAATATAAAACT+TGG + chr5_3:16269611-16269630 None:intergenic 30.0%
! CATCAAGTTTTTGTTCTTCT+CGG - chr5_3:16269688-16269707 Msa0802090:intron 30.0%
TCAACCAATAAAACCGTAAA+GGG + chr5_3:16269769-16269788 None:intergenic 30.0%
ATCAACCAATAAAACCGTAA+AGG + chr5_3:16269770-16269789 None:intergenic 30.0%
! ATAAATGGTAGTGAAACCAA+AGG + chr5_3:16269823-16269842 None:intergenic 30.0%
GAAGAAAAAAGGATAGATCT+GGG + chr5_3:16269874-16269893 None:intergenic 30.0%
AGAAGAAAAAAGGATAGATC+TGG + chr5_3:16269875-16269894 None:intergenic 30.0%
CAACAATGACAAAACAATTG+TGG + chr5_3:16270071-16270090 None:intergenic 30.0%
TTATAGGCTTTCAAAAAAGG+AGG + chr5_3:16270184-16270203 None:intergenic 30.0%
CAATTCTTACCATTTACTAG+TGG - chr5_3:16270269-16270288 Msa0802090:intron 30.0%
TTAATGAGACTTATGATTGC+TGG - chr5_3:16270351-16270370 Msa0802090:intron 30.0%
CAGTCAAATATTAAGCAGAT+TGG + chr5_3:16270503-16270522 None:intergenic 30.0%
ACACTTAAATCTCAAGCAAA+GGG - chr5_3:16270665-16270684 Msa0802090:intron 30.0%
AAAGTGCATCTCTTACTTTA+GGG + chr5_3:16270698-16270717 None:intergenic 30.0%
TAAAGTGCATCTCTTACTTT+AGG + chr5_3:16270699-16270718 None:intergenic 30.0%
AACATTGAATGAGATATCAG+TGG + chr5_3:16270828-16270847 None:intergenic 30.0%
!!! GGGTGTAGATCTTTTTTATT+TGG + chr5_3:16270884-16270903 None:intergenic 30.0%
CAAATATTGATCTCTAAGCA+TGG - chr5_3:16271216-16271235 Msa0802090:intron 30.0%
!!! AAACGTGACTGCATTTTTTT+TGG - chr5_3:16271251-16271270 Msa0802090:intron 30.0%
! TAATTTTCAGCATGCATGTT+TGG + chr5_3:16271346-16271365 None:intergenic 30.0%
TGGATCAAGTGAAAAATAAG+AGG - chr5_3:16271510-16271529 Msa0802090:intron 30.0%
GTGATTGTGTTATATGGTTA+TGG - chr5_3:16271539-16271558 Msa0802090:intron 30.0%
TGTGTTATATGGTTATGGTT+CGG - chr5_3:16271544-16271563 Msa0802090:intron 30.0%
TGGATAACTGTGGTTATTAA+TGG - chr5_3:16271574-16271593 Msa0802090:intron 30.0%
AACTGTGGTTATTAATGGTT+CGG - chr5_3:16271579-16271598 Msa0802090:intron 30.0%
!!! AATTTTGATATGGTTCGGTT+CGG - chr5_3:16271665-16271684 Msa0802090:intron 30.0%
TTACTTGAAGATGGAGAAAA+AGG - chr5_3:16271753-16271772 Msa0802090:intron 30.0%
GTTGTCACAATTTAAACTGA+TGG + chr5_3:16271823-16271842 None:intergenic 30.0%
!!! TCAACTGAACATTTTTTACG+GGG + chr5_3:16271906-16271925 None:intergenic 30.0%
!!! GTCAACTGAACATTTTTTAC+GGG + chr5_3:16271907-16271926 None:intergenic 30.0%
!! GTAAACCTGTTATTTCTAGT+TGG - chr5_3:16272058-16272077 Msa0802090:intron 30.0%
ACATTCCAACTAGAAATAAC+AGG + chr5_3:16272066-16272085 None:intergenic 30.0%
GATTACATGCTATATAAAGC+TGG - chr5_3:16272132-16272151 Msa0802090:intron 30.0%
ATGCGCATCAACATAATAAA+GGG - chr5_3:16272263-16272282 Msa0802090:intron 30.0%
!! ACTAGCTTTCATATAGATCT+AGG - chr5_3:16272433-16272452 Msa0802090:intron 30.0%
ATGAAGATAGAAGTTGTTTG+AGG + chr5_3:16272664-16272683 None:intergenic 30.0%
! GCTTGGTTAGTTATTGTATA+TGG - chr5_3:16272779-16272798 Msa0802090:intron 30.0%
TATTGGGAATCTGAAAATCT+CGG + chr5_3:16272822-16272841 None:intergenic 30.0%
ACTATACATGACTTCCTTAT+TGG + chr5_3:16272936-16272955 None:intergenic 30.0%
ATAGAATTGCGATAACCCAT+CGG + chr5_3:16267074-16267093 None:intergenic 35.0%
! ATTCTCCATTCCTTTTCTTC+TGG - chr5_3:16267110-16267129 Msa0802090:three_prime_UTR 35.0%
! TTCTCCATTCCTTTTCTTCT+GGG - chr5_3:16267111-16267130 Msa0802090:three_prime_UTR 35.0%
AAGGTTAATTGGGGATTGTT+TGG - chr5_3:16267414-16267433 Msa0802090:CDS 35.0%
! AAGTTATCTACAAGAGCGTA+TGG + chr5_3:16267533-16267552 None:intergenic 35.0%
! AGAGCAGTATGCTAAGATTT+TGG - chr5_3:16267689-16267708 Msa0802090:intron 35.0%
TAATCAAACGGATATGAGAG+TGG + chr5_3:16268198-16268217 None:intergenic 35.0%
!!! AGAAGTTTTGAGATGAATGG+GGG - chr5_3:16268249-16268268 Msa0802090:intron 35.0%
TTGCCGTTATGATTACTACT+GGG - chr5_3:16268421-16268440 Msa0802090:intron 35.0%
AAGCCCAGTAGTAATCATAA+CGG + chr5_3:16268427-16268446 None:intergenic 35.0%
AAAACAAGGCATGAGTAAGA+AGG - chr5_3:16268531-16268550 Msa0802090:intron 35.0%
ATTTCGTGTATTCAGATGGA+AGG + chr5_3:16268699-16268718 None:intergenic 35.0%
CTTATTTCCCTGCATATTCT+CGG - chr5_3:16268741-16268760 Msa0802090:intron 35.0%
ACAACCCAAAAGAATTACCT+AGG + chr5_3:16269053-16269072 None:intergenic 35.0%
GACACAGTACAAATTTAAGG+TGG - chr5_3:16269210-16269229 Msa0802090:intron 35.0%
! CACAGTACAAATTTAAGGTG+GGG - chr5_3:16269212-16269231 Msa0802090:intron 35.0%
! TATCAAAGACCACAAGTTGA+AGG + chr5_3:16269238-16269257 None:intergenic 35.0%
CAAACCCTACTCATAATTCA+AGG - chr5_3:16269491-16269510 Msa0802090:intron 35.0%
!! TTGTCCCTTTACGGTTTTAT+TGG - chr5_3:16269762-16269781 Msa0802090:CDS 35.0%
CAAATGTCGAATCTTAAGTG+AGG + chr5_3:16269998-16270017 None:intergenic 35.0%
!!! GTTGTTGTTTTGCACATGTT+TGG - chr5_3:16270087-16270106 Msa0802090:intron 35.0%
TACCATTTACTAGTGGTTAG+AGG - chr5_3:16270276-16270295 Msa0802090:intron 35.0%
CAGATTGGAAAGATAGTGTA+AGG + chr5_3:16270488-16270507 None:intergenic 35.0%
GACACTTAAATCTCAAGCAA+AGG - chr5_3:16270664-16270683 Msa0802090:intron 35.0%
TAAATCTCAAGCAAAGGGTT+TGG - chr5_3:16270670-16270689 Msa0802090:intron 35.0%
TATTTGGAGATTTGACTCCT+AGG + chr5_3:16270868-16270887 None:intergenic 35.0%
TAACCAAACCAAACCGTTTA+AGG - chr5_3:16271019-16271038 Msa0802090:CDS 35.0%
!! AAACCTTAAACGGTTTGGTT+TGG + chr5_3:16271025-16271044 None:intergenic 35.0%
! AAACCAAACCGTTTAAGGTT+TGG - chr5_3:16271024-16271043 Msa0802090:CDS 35.0%
! GGTTAGTTCCAAACCTTAAA+CGG + chr5_3:16271035-16271054 None:intergenic 35.0%
! ACCATAACTTTGGTTCAGTT+CGG + chr5_3:16271056-16271075 None:intergenic 35.0%
ACTGAACCAAAGTTATGGTT+CGG - chr5_3:16271057-16271076 Msa0802090:CDS 35.0%
!!! ATTTTGGTTTTGGTTCGGTT+CGG + chr5_3:16271106-16271125 None:intergenic 35.0%
TTGATCTCTAAGCATGGTTT+AGG - chr5_3:16271222-16271241 Msa0802090:intron 35.0%
TGATCTCTAAGCATGGTTTA+GGG - chr5_3:16271223-16271242 Msa0802090:intron 35.0%
! ATGCGCAAATGGATATCTTT+TGG - chr5_3:16271371-16271390 Msa0802090:intron 35.0%
TGTTGCGTGATTGTGTTATA+TGG - chr5_3:16271533-16271552 Msa0802090:intron 35.0%
!! TATATGGTTATGGTTCGGTT+TGG - chr5_3:16271549-16271568 Msa0802090:intron 35.0%
!! TGGTTATTAATGGTTCGGTT+CGG - chr5_3:16271584-16271603 Msa0802090:intron 35.0%
ATCTTCAAGTAAACGAGTAG+GGG + chr5_3:16271745-16271764 None:intergenic 35.0%
CATCTTCAAGTAAACGAGTA+GGG + chr5_3:16271746-16271765 None:intergenic 35.0%
CATTTCCATTTCTTTGTTCG+CGG + chr5_3:16271949-16271968 None:intergenic 35.0%
TAGTTGGAATGTTACTGAAC+TGG - chr5_3:16272074-16272093 Msa0802090:intron 35.0%
GGATATAGCTCAAAATTCAC+TGG + chr5_3:16272190-16272209 None:intergenic 35.0%
GATGCGCATCAACATAATAA+AGG - chr5_3:16272262-16272281 Msa0802090:intron 35.0%
!! CAGTTGAGTATTGACATCTA+AGG - chr5_3:16272351-16272370 Msa0802090:intron 35.0%
TTATACACGTACATCGTATC+AGG - chr5_3:16272510-16272529 Msa0802090:intron 35.0%
TATACACGTACATCGTATCA+GGG - chr5_3:16272511-16272530 Msa0802090:intron 35.0%
CCAATAATTTATCGTCTCCA+TGG + chr5_3:16272537-16272556 None:intergenic 35.0%
CCATGGAGACGATAAATTAT+TGG - chr5_3:16272534-16272553 Msa0802090:intron 35.0%
!!! ATTGGTTTTCAGATAAGGGA+AGG - chr5_3:16272552-16272571 Msa0802090:intron 35.0%
TATTTCCCACCTCCAAAAAT+TGG + chr5_3:16272582-16272601 None:intergenic 35.0%
!! ATAATACTTGGTGCCATATC+TGG - chr5_3:16272599-16272618 Msa0802090:intron 35.0%
AGATGTTGAGAATCCAGATA+TGG + chr5_3:16272615-16272634 None:intergenic 35.0%
!! AAAAGTATCCATGCTGCAAA+CGG + chr5_3:16272695-16272714 None:intergenic 35.0%
!!! TTGCAGCATGGATACTTTTT+TGG - chr5_3:16272696-16272715 Msa0802090:intron 35.0%
! TATGGCATACTCATCTTTTG+TGG - chr5_3:16272757-16272776 Msa0802090:intron 35.0%
ATTGTATATGGGAAAAGGCT+TGG - chr5_3:16272791-16272810 Msa0802090:intron 35.0%
ATACACGGTATTCAACCAAA+GGG + chr5_3:16272876-16272895 None:intergenic 35.0%
AATACACGGTATTCAACCAA+AGG + chr5_3:16272877-16272896 None:intergenic 35.0%
! TGACTCGTCATAGTTTGTAA+CGG + chr5_3:16273103-16273122 None:intergenic 35.0%
TCATTCCATCAATCCAAACA+CGG + chr5_3:16273167-16273186 None:intergenic 35.0%
TCACTAAACTTTGTCGTAAG+AGG - chr5_3:16273365-16273384 Msa0802090:five_prime_UTR 35.0%
TTCAACATTTCTCCGATCAC+CGG - chr5_3:16266901-16266920 Msa0802090:three_prime_UTR 40.0%
!! AAGGATTGGTTAGGGTTTAG+GGG + chr5_3:16266966-16266985 None:intergenic 40.0%
!! GAAGGATTGGTTAGGGTTTA+GGG + chr5_3:16266967-16266986 None:intergenic 40.0%
CAAACCCAGAAGAAAAGGAA+TGG + chr5_3:16267118-16267137 None:intergenic 40.0%
AGAAGCAAACCCAGAAGAAA+AGG + chr5_3:16267123-16267142 None:intergenic 40.0%
AGTATCACAAGTGCTTATGC+TGG + chr5_3:16267463-16267482 None:intergenic 40.0%
AAAGTGTGGATTTGGATCAC+TGG - chr5_3:16267793-16267812 Msa0802090:intron 40.0%
TTATGAGCTAATGATTGGCG+TGG - chr5_3:16268161-16268180 Msa0802090:intron 40.0%
!!! GAAGTTTTGAGATGAATGGG+GGG - chr5_3:16268250-16268269 Msa0802090:intron 40.0%
GTTGCCGTTATGATTACTAC+TGG - chr5_3:16268420-16268439 Msa0802090:intron 40.0%
GGTGTTTCTCTGTACTTACT+AGG + chr5_3:16268657-16268676 None:intergenic 40.0%
GGAAATGCTTGTACTTTCCA+GGG + chr5_3:16268678-16268697 None:intergenic 40.0%
AGGAAATGCTTGTACTTTCC+AGG + chr5_3:16268679-16268698 None:intergenic 40.0%
AGGTCTGCAATAAAGAGGAA+GGG + chr5_3:16269170-16269189 None:intergenic 40.0%
TAGGTCTGCAATAAAGAGGA+AGG + chr5_3:16269171-16269190 None:intergenic 40.0%
AACCATGCAGCACCAAAATT+AGG + chr5_3:16269190-16269209 None:intergenic 40.0%
! ACTTGATGATCAAAGCGCAA+TGG + chr5_3:16269676-16269695 None:intergenic 40.0%
AAAGGGACAAGTACAAAGCT+TGG + chr5_3:16269752-16269771 None:intergenic 40.0%
GCTTTGTACTTGTCCCTTTA+CGG - chr5_3:16269753-16269772 Msa0802090:CDS 40.0%
TTGATACCACATTCAGCTTG+TGG - chr5_3:16269785-16269804 Msa0802090:CDS 40.0%
CACTACCATTTATTGCTTGC+AGG - chr5_3:16269830-16269849 Msa0802090:CDS 40.0%
AGTGTCCTGCAAGCAATAAA+TGG + chr5_3:16269838-16269857 None:intergenic 40.0%
GTCTTAGTTGTAGTTTGGCA+CGG - chr5_3:16269939-16269958 Msa0802090:intron 40.0%
GACCTCTAACCACTAGTAAA+TGG + chr5_3:16270281-16270300 None:intergenic 40.0%
TACTAGTGGTTAGAGGTCTT+TGG - chr5_3:16270283-16270302 Msa0802090:intron 40.0%
TATGATTGCTGGTACACATC+TGG - chr5_3:16270362-16270381 Msa0802090:intron 40.0%
! GATAGTGTAAGGTACTCACT+GGG + chr5_3:16270477-16270496 None:intergenic 40.0%
! AGATAGTGTAAGGTACTCAC+TGG + chr5_3:16270478-16270497 None:intergenic 40.0%
! CACTTTAGAGAGTAGAGTGT+GGG - chr5_3:16270712-16270731 Msa0802090:intron 40.0%
!! ACACCCTCTCTAGTTCTTTA+TGG - chr5_3:16270898-16270917 Msa0802090:intron 40.0%
TGGCCATAAAGAACTAGAGA+GGG + chr5_3:16270904-16270923 None:intergenic 40.0%
ATGGCCATAAAGAACTAGAG+AGG + chr5_3:16270905-16270924 None:intergenic 40.0%
TATGGCCATTCAAATGTGTG+AGG - chr5_3:16270916-16270935 Msa0802090:intron 40.0%
AATGTGTGAGGCTCGTTTAT+AGG - chr5_3:16270928-16270947 Msa0802090:intron 40.0%
ATGTGTGAGGCTCGTTTATA+GGG - chr5_3:16270929-16270948 Msa0802090:intron 40.0%
!! TCAGTTCGGTTCGGATAATA+TGG + chr5_3:16270974-16270993 None:intergenic 40.0%
TTCAACACTTCGGTTCAGTT+CGG + chr5_3:16270988-16271007 None:intergenic 40.0%
!! ACTGAACCGAAGTGTTGAAA+TGG - chr5_3:16270989-16271008 Msa0802090:intron 40.0%
!! ACCGAAGTGTTGAAATGGTT+CGG - chr5_3:16270994-16271013 Msa0802090:CDS 40.0%
TCCGAACCATTTCAACACTT+CGG + chr5_3:16270998-16271017 None:intergenic 40.0%
GTTCCAAACCTTAAACGGTT+TGG + chr5_3:16271030-16271049 None:intergenic 40.0%
ACCGAACTGAACCAAAGTTA+TGG - chr5_3:16271052-16271071 Msa0802090:CDS 40.0%
GGTTAACCGAACCATAACTT+TGG + chr5_3:16271066-16271085 None:intergenic 40.0%
TCGGTTAATAGGCAAGCAAA+CGG + chr5_3:16271087-16271106 None:intergenic 40.0%
!! TTTGGTTCGGTTCGGTTAAT+AGG + chr5_3:16271098-16271117 None:intergenic 40.0%
! GCAAATGGATATCTTTTGGC+AGG - chr5_3:16271375-16271394 Msa0802090:intron 40.0%
TAACCAATAACCGAACCGAA+CGG + chr5_3:16271712-16271731 None:intergenic 40.0%
CCATCTTCAAGTAAACGAGT+AGG + chr5_3:16271747-16271766 None:intergenic 40.0%
CCTACTCGTTTACTTGAAGA+TGG - chr5_3:16271744-16271763 Msa0802090:intron 40.0%
TGAAGATGGAGAAAAAGGCT+TGG - chr5_3:16271758-16271777 Msa0802090:intron 40.0%
GAAGATGGAGAAAAAGGCTT+GGG - chr5_3:16271759-16271778 Msa0802090:intron 40.0%
GGCTAAAAGATCAGTTCTCT+TGG - chr5_3:16271988-16272007 Msa0802090:intron 40.0%
TGTATAACAGCAGCATCTTC+AGG + chr5_3:16272311-16272330 None:intergenic 40.0%
! GTTTTCAGATAAGGGAAGGA+GGG - chr5_3:16272556-16272575 Msa0802090:intron 40.0%
TGGAGGTGGGAAATAATACT+TGG - chr5_3:16272587-16272606 Msa0802090:intron 40.0%
! CAAGCGCACATGTTTTCTTA+TGG - chr5_3:16272739-16272758 Msa0802090:intron 40.0%
! CATACTCATCTTTTGTGGCT+TGG - chr5_3:16272762-16272781 Msa0802090:intron 40.0%
ACTTCCTTATTGGTGCAGAT+GGG + chr5_3:16272926-16272945 None:intergenic 40.0%
! GACTCGTCATAGTTTGTAAC+GGG + chr5_3:16273102-16273121 None:intergenic 40.0%
CAGTGTTGTAAAAGCCATTG+TGG - chr5_3:16273141-16273160 Msa0802090:CDS 40.0%
!! GAATTTGAGGGTATTGACGC+CGG + chr5_3:16266937-16266956 None:intergenic 45.0%
GCGTCAATACCCTCAAATTC+CGG - chr5_3:16266937-16266956 Msa0802090:three_prime_UTR 45.0%
!! GGAAGGATTGGTTAGGGTTT+AGG + chr5_3:16266968-16266987 None:intergenic 45.0%
!! CATGGAGGAAGGATTGGTTA+GGG + chr5_3:16266974-16266993 None:intergenic 45.0%
AGAATCCATGGAGGAAGGAT+TGG + chr5_3:16266980-16266999 None:intergenic 45.0%
! TCTTGTTGGTTGGATTGGGA+GGG + chr5_3:16267003-16267022 None:intergenic 45.0%
! ATCTTGTTGGTTGGATTGGG+AGG + chr5_3:16267004-16267023 None:intergenic 45.0%
! GGGATCTTGTTGGTTGGATT+GGG + chr5_3:16267007-16267026 None:intergenic 45.0%
GGACAGAGAAATCGGAAATG+AGG + chr5_3:16267149-16267168 None:intergenic 45.0%
ACTGAAGAGAAACGGGGTTT+GGG + chr5_3:16267170-16267189 None:intergenic 45.0%
AGTGTGACTGAAGAGAAACG+GGG + chr5_3:16267176-16267195 None:intergenic 45.0%
CAGTGTGACTGAAGAGAAAC+GGG + chr5_3:16267177-16267196 None:intergenic 45.0%
GCAGTGTGACTGAAGAGAAA+CGG + chr5_3:16267178-16267197 None:intergenic 45.0%
CTACTGGGCTTCAGTATTCA+AGG - chr5_3:16268436-16268455 Msa0802090:intron 45.0%
ACTCAGAATCCGTAGTCAGA+TGG - chr5_3:16268631-16268650 Msa0802090:intron 45.0%
CTTACTAGGCCATCTGACTA+CGG + chr5_3:16268643-16268662 None:intergenic 45.0%
GTAAGTACAGAGAAACACCC+TGG - chr5_3:16268658-16268677 Msa0802090:intron 45.0%
! TGGGAGCATGCTTTCTGTAT+AGG + chr5_3:16268966-16268985 None:intergenic 45.0%
TAAAGAGGAAGGGCTTCACT+TGG + chr5_3:16269160-16269179 None:intergenic 45.0%
!!! GACCTAATTTTGGTGCTGCA+TGG - chr5_3:16269185-16269204 Msa0802090:intron 45.0%
CCACTCTACCATGCTCAAAT+TGG + chr5_3:16269550-16269569 None:intergenic 45.0%
CCAATTTGAGCATGGTAGAG+TGG - chr5_3:16269547-16269566 Msa0802090:intron 45.0%
AGAGATCCACAAGCTGAATG+TGG + chr5_3:16269794-16269813 None:intergenic 45.0%
GTGGATCTCTCATTTGCCTT+TGG - chr5_3:16269804-16269823 Msa0802090:CDS 45.0%
!! GCACGGTTTTGTCTCATGTA+CGG - chr5_3:16269956-16269975 Msa0802090:intron 45.0%
TAGTAGACTGCTCATCAGCA+CGG + chr5_3:16270430-16270449 None:intergenic 45.0%
! GCACTTTAGAGAGTAGAGTG+TGG - chr5_3:16270711-16270730 Msa0802090:intron 45.0%
GAGATTTGACTCCTAGGTGT+AGG + chr5_3:16270862-16270881 None:intergenic 45.0%
ACGAGCCTCACACATTTGAA+TGG + chr5_3:16270924-16270943 None:intergenic 45.0%
TGTGTGAGGCTCGTTTATAG+GGG - chr5_3:16270930-16270949 Msa0802090:intron 45.0%
!! GGTTATGGTTCGGTTTGGTT+TGG - chr5_3:16271554-16271573 Msa0802090:intron 45.0%
!! CGGTTTGGTTTGGATAACTG+TGG - chr5_3:16271564-16271583 Msa0802090:intron 45.0%
!! TAACCGTTCGGTTCGGTTAT+TGG - chr5_3:16271706-16271725 Msa0802090:intron 45.0%
TCAAGTAAACGAGTAGGGGT+GGG + chr5_3:16271741-16271760 None:intergenic 45.0%
TTCAAGTAAACGAGTAGGGG+TGG + chr5_3:16271742-16271761 None:intergenic 45.0%
AGGTTCCGCGAACAAAGAAA+TGG - chr5_3:16271941-16271960 Msa0802090:intron 45.0%
! GGTTTTCAGATAAGGGAAGG+AGG - chr5_3:16272555-16272574 Msa0802090:intron 45.0%
ACATGTGCGCTTGATGAGAA+CGG + chr5_3:16272732-16272751 None:intergenic 45.0%
TTGTCCCATCTGCACCAATA+AGG - chr5_3:16272919-16272938 Msa0802090:intron 45.0%
GACTTCCTTATTGGTGCAGA+TGG + chr5_3:16272927-16272946 None:intergenic 45.0%
!!! GTATTTTTTATTTTTATTTT+GGG - chr5_3:16272455-16272474 Msa0802090:intron 5.0%
TTTCTCCGATCACCGGATTC+CGG - chr5_3:16266908-16266927 Msa0802090:three_prime_UTR 50.0%
TAGGGGTTGCCGGAATTTGA+GGG + chr5_3:16266949-16266968 None:intergenic 50.0%
TTAGGGGTTGCCGGAATTTG+AGG + chr5_3:16266950-16266969 None:intergenic 50.0%
!! CCATGGAGGAAGGATTGGTT+AGG + chr5_3:16266975-16266994 None:intergenic 50.0%
CCTAACCAATCCTTCCTCCA+TGG - chr5_3:16266972-16266991 Msa0802090:three_prime_UTR 50.0%
! GGGGATCTTGTTGGTTGGAT+TGG + chr5_3:16267008-16267027 None:intergenic 50.0%
TCGCTTTCGTCATACTCCGA+TGG - chr5_3:16267055-16267074 Msa0802090:three_prime_UTR 50.0%
CGCTTTCGTCATACTCCGAT+GGG - chr5_3:16267056-16267075 Msa0802090:three_prime_UTR 50.0%
! GGGGTTTGGGACAGAGAAAT+CGG + chr5_3:16267157-16267176 None:intergenic 50.0%
GACTGAAGAGAAACGGGGTT+TGG + chr5_3:16267171-16267190 None:intergenic 50.0%
CACTGCAAAATCGTCTCCAC+CGG - chr5_3:16267192-16267211 Msa0802090:three_prime_UTR 50.0%
! GAGACAAGTTGCGTTTGCTG+AGG - chr5_3:16269132-16269151 Msa0802090:intron 50.0%
GCAATGGCGATGGTTCGAAA+AGG + chr5_3:16269660-16269679 None:intergenic 50.0%
TGATCAAAGCGCAATGGCGA+TGG + chr5_3:16269670-16269689 None:intergenic 50.0%
CAAGTACAAAGCTTGGCCAG+TGG + chr5_3:16269745-16269764 None:intergenic 50.0%
GTAATCCCACACCTACACCT+AGG - chr5_3:16270848-16270867 Msa0802090:intron 50.0%
TGACTCCTAGGTGTAGGTGT+GGG + chr5_3:16270856-16270875 None:intergenic 50.0%
TTGACTCCTAGGTGTAGGTG+TGG + chr5_3:16270857-16270876 None:intergenic 50.0%
TGAGGCTCGTTTATAGGGGT+GGG - chr5_3:16270934-16270953 Msa0802090:intron 50.0%
TTATAGGGGTGGGCATGGTT+CGG - chr5_3:16270944-16270963 Msa0802090:intron 50.0%
CACTTCGGTTCAGTTCGGTT+CGG + chr5_3:16270983-16271002 None:intergenic 50.0%
!! GTTCGGTTCGGTTAACCGTT+CGG - chr5_3:16271677-16271696 Msa0802090:intron 50.0%
GTTCGGTTAACCGTTCGGTT+CGG - chr5_3:16271682-16271701 Msa0802090:intron 50.0%
GAACGGTTAACCGAACCGAA+CGG + chr5_3:16271678-16271697 None:intergenic 50.0%
!! GTTCGGTTCGGTTAACCGTT+CGG - chr5_3:16271677-16271696 Msa0802090:intron 50.0%
GTTCGGTTAACCGTTCGGTT+CGG - chr5_3:16271682-16271701 Msa0802090:intron 50.0%
AGCATCTTCAGGACGACAGA+GGG + chr5_3:16272300-16272319 None:intergenic 50.0%
! AGGGAAGGAGGGCCAATTTT+TGG - chr5_3:16272567-16272586 Msa0802090:intron 50.0%
!! GAAGGAGGGCCAATTTTTGG+AGG - chr5_3:16272570-16272589 Msa0802090:intron 50.0%
!! GAGGGCCAATTTTTGGAGGT+GGG - chr5_3:16272574-16272593 Msa0802090:intron 50.0%
TACATCGACCGTTTGCAGCA+TGG - chr5_3:16272684-16272703 Msa0802090:intron 50.0%
GGAATCTGAAAATCTCGGCG+AGG + chr5_3:16272817-16272836 None:intergenic 50.0%
! GGTGAAGTGCTATGACCCTT+TGG - chr5_3:16272858-16272877 Msa0802090:intron 50.0%
AAAGCCATTGTGGCCGTGTT+TGG - chr5_3:16273151-16273170 Msa0802090:CDS 50.0%
CAATCCAAACACGGCCACAA+TGG + chr5_3:16273158-16273177 None:intergenic 50.0%
TGTGGCCGTGTTTGGATTGA+TGG - chr5_3:16273159-16273178 Msa0802090:CDS 50.0%
GTTGACCACCTCCCATCATA+CGG - chr5_3:16273244-16273263 Msa0802090:five_prime_UTR 50.0%
ACAAAGCCACGCCGTATGAT+GGG + chr5_3:16273258-16273277 None:intergenic 50.0%
GGTTAGGGTTTAGGGGTTGC+CGG + chr5_3:16266959-16266978 None:intergenic 55.0%
GAGGGAGAATCCATGGAGGA+AGG + chr5_3:16266985-16267004 None:intergenic 55.0%
TTGGGAGGGAGAATCCATGG+AGG + chr5_3:16266989-16267008 None:intergenic 55.0%
GGATTGGGAGGGAGAATCCA+TGG + chr5_3:16266992-16267011 None:intergenic 55.0%
TGACGCCACCGTTCCTTTGA+GGG + chr5_3:16267035-16267054 None:intergenic 55.0%
ATGACGCCACCGTTCCTTTG+AGG + chr5_3:16267036-16267055 None:intergenic 55.0%
AAGGTGGGGCCTTCAACTTG+TGG - chr5_3:16269226-16269245 Msa0802090:intron 55.0%
GGCATGAAGAAAGTGGCGTG+TGG + chr5_3:16269724-16269743 None:intergenic 55.0%
! CGCCACTTTCTTCATGCCAC+TGG - chr5_3:16269726-16269745 Msa0802090:intron 55.0%
GGCCAGTGGCATGAAGAAAG+TGG + chr5_3:16269731-16269750 None:intergenic 55.0%
GTGAGGCTCGTTTATAGGGG+TGG - chr5_3:16270933-16270952 Msa0802090:intron 55.0%
CTCGTTTATAGGGGTGGGCA+TGG - chr5_3:16270939-16270958 Msa0802090:intron 55.0%
!! GCTTGGGCTTAGCCTTGAGT+TGG - chr5_3:16271775-16271794 Msa0802090:CDS 55.0%
!! TGGGCTTAGCCTTGAGTTGG+TGG - chr5_3:16271778-16271797 Msa0802090:CDS 55.0%
!! GGGCTTAGCCTTGAGTTGGT+GGG - chr5_3:16271779-16271798 Msa0802090:CDS 55.0%
!! CTTAGCCTTGAGTTGGTGGG+TGG - chr5_3:16271782-16271801 Msa0802090:CDS 55.0%
GATCTCCACCCACCAACTCA+AGG + chr5_3:16271790-16271809 None:intergenic 55.0%
!! GAGTTGGTGGGTGGAGATCT+AGG - chr5_3:16271791-16271810 Msa0802090:CDS 55.0%
GCATCTTCAGGACGACAGAG+GGG + chr5_3:16272299-16272318 None:intergenic 55.0%
CAGCATCTTCAGGACGACAG+AGG + chr5_3:16272301-16272320 None:intergenic 55.0%
CGTACATCGTATCAGGGCCA+TGG - chr5_3:16272517-16272536 Msa0802090:intron 55.0%
!! GGAGGGCCAATTTTTGGAGG+TGG - chr5_3:16272573-16272592 Msa0802090:intron 55.0%
CACAAAGCCACGCCGTATGA+TGG + chr5_3:16273259-16273278 None:intergenic 55.0%
!! CATACGGCGTGGCTTTGTGA+TGG - chr5_3:16273260-16273279 Msa0802090:five_prime_UTR 55.0%
GGTCACCGGAATCCGGTGAT+CGG + chr5_3:16266916-16266935 None:intergenic 60.0%
GATCACCGGATTCCGGTGAC+CGG - chr5_3:16266915-16266934 Msa0802090:three_prime_UTR 60.0%
!! AGGGTATTGACGCCGGTCAC+CGG + chr5_3:16266930-16266949 None:intergenic 60.0%
GCGAGGGGGATCTTGTTGGT+TGG + chr5_3:16267013-16267032 None:intergenic 60.0%
AAGATCCCCCTCGCCCTCAA+AGG - chr5_3:16267019-16267038 Msa0802090:three_prime_UTR 60.0%
! ACCGTTCCTTTGAGGGCGAG+GGG + chr5_3:16267028-16267047 None:intergenic 60.0%
! CACCGTTCCTTTGAGGGCGA+GGG + chr5_3:16267029-16267048 None:intergenic 60.0%
CTTCAGGACGACAGAGGGGT+GGG + chr5_3:16272295-16272314 None:intergenic 60.0%
TCTTCAGGACGACAGAGGGG+TGG + chr5_3:16272296-16272315 None:intergenic 60.0%
! AAGCCACGCCGTATGATGGG+AGG + chr5_3:16273255-16273274 None:intergenic 60.0%
TGACGCCGGTCACCGGAATC+CGG + chr5_3:16266923-16266942 None:intergenic 65.0%
GAGGGCGAGGGGGATCTTGT+TGG + chr5_3:16267017-16267036 None:intergenic 65.0%
! CCGTTCCTTTGAGGGCGAGG+GGG + chr5_3:16267027-16267046 None:intergenic 65.0%
CCCCCTCGCCCTCAAAGGAA+CGG - chr5_3:16267024-16267043 Msa0802090:three_prime_UTR 65.0%
! CCACCGTTCCTTTGAGGGCG+AGG + chr5_3:16267030-16267049 None:intergenic 65.0%
CCTCGCCCTCAAAGGAACGG+TGG - chr5_3:16267027-16267046 Msa0802090:three_prime_UTR 65.0%
! CCACGCCGTATGATGGGAGG+TGG + chr5_3:16273252-16273271 None:intergenic 65.0%
CCACCTCCCATCATACGGCG+TGG - chr5_3:16273249-16273268 Msa0802090:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 16266816 16273402 16266816 ID=Msa0802090;Name=Msa0802090
chr5_3 mRNA 16266816 16273402 16266816 ID=Msa0802090-mRNA-1;Parent=Msa0802090;Name=Msa0802090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=175|1|1|1|1|1|5|555|307
chr5_3 exon 16266816 16267686 16266816 ID=Msa0802090-mRNA-1:exon:6814;Parent=Msa0802090-mRNA-1
chr5_3 exon 16269741 16269868 16269741 ID=Msa0802090-mRNA-1:exon:6813;Parent=Msa0802090-mRNA-1
chr5_3 exon 16270990 16271115 16270990 ID=Msa0802090-mRNA-1:exon:6812;Parent=Msa0802090-mRNA-1
chr5_3 exon 16271761 16271891 16271761 ID=Msa0802090-mRNA-1:exon:6811;Parent=Msa0802090-mRNA-1
chr5_3 exon 16273005 16273402 16273005 ID=Msa0802090-mRNA-1:exon:6810;Parent=Msa0802090-mRNA-1
chr5_3 five_prime_UTR 16273228 16273402 16273228 ID=Msa0802090-mRNA-1:five_prime_utr;Parent=Msa0802090-mRNA-1
chr5_3 CDS 16273005 16273227 16273005 ID=Msa0802090-mRNA-1:cds;Parent=Msa0802090-mRNA-1
chr5_3 CDS 16271761 16271891 16271761 ID=Msa0802090-mRNA-1:cds;Parent=Msa0802090-mRNA-1
chr5_3 CDS 16270990 16271115 16270990 ID=Msa0802090-mRNA-1:cds;Parent=Msa0802090-mRNA-1
chr5_3 CDS 16269741 16269868 16269741 ID=Msa0802090-mRNA-1:cds;Parent=Msa0802090-mRNA-1
chr5_3 CDS 16267371 16267686 16267371 ID=Msa0802090-mRNA-1:cds;Parent=Msa0802090-mRNA-1
chr5_3 three_prime_UTR 16266816 16267370 16266816 ID=Msa0802090-mRNA-1:three_prime_utr;Parent=Msa0802090-mRNA-1
Gene Sequence

>Msa0802090

ATGGATTCTCCCTCCCAATCCAACCAACAAGATCCCCCTCGCCCTCAAAGGAACGGTGGCGTCATCGCTTTCGTCATACTCCGATGGGTTATCGCAATTCTATTACCCTTCGTTTTCTTATTCTCCATTCCTTTTCTTCTGGGTTTGCTTCTTCTCCTCATTTCCGATTTCTCTGTCCCAAACCCCGTTTCTCTTCAGTCACACTGCAAAATCGTCTCCACCGGTGTTGATATTAGATCATCTAAGATTTGTGAACTCAGATTGTTAAATTATAAAGCAAAGGATGTTTTTCGTCATTTTGAAAGTAGCAAATTTCGTTGCCGTTATGATTACTACTGGGCTTCAGTATTCAAGGTGGAATACAAAGATCACTTTTCAGGTCAGAGACAAGTTGCGTTTGCTGAGGCTCCAAGTGAAGCCCTTCCTCTTTATTGCAGACCTAATTTTGGTGCTGCATGGTTGACACAGTACAAATTTAAGGTTAATGAGACTTATGATTGCTGGTACACATCTGGCATTTCCAAAGTACATTTATATCAAGACAATCTCTTTGGTTGCCGTGCTGATGAGCAGTCTACTATTCAGAAGATTGTACAATATTATACCCAGGCCATGGAGACGATAAATTATTGGTTTTCAGATAAGGGAAGGAGGGCCAATTTTTGGAGGTGGGAAATAATACTTGGTGCCATATCTGGATTCTCAACATCTTTGATCACCATAACTTTTATTATGTTCCTCAAACAACTTCTATCTTCATTACATCGACCGTTTGCAGCATGGATACTTTTTTGGCGTGTCAATACCGTTCTCATCAAGCGCACATGTTTTCTTATGGCATACTCATCTTTTGTGGCTTGGTTAGTTATTGTATATGGGAAAAGGCTTGGCCTCGCCGAGATTTTCAGATTCCCAATATTATAG
Protein sequence

>Msa0802090

MDSPSQSNQQDPPRPQRNGGVIAFVILRWVIAILLPFVFLFSIPFLLGLLLLLISDFSVPNPVSLQSHCKIVSTGVDIRSSKICELRLLNYKAKDVFRHFESSKFRCRYDYYWASVFKVEYKDHFSGQRQVAFAEAPSEALPLYCRPNFGAAWLTQYKFKVNETYDCWYTSGISKVHLYQDNLFGCRADEQSTIQKIVQYYTQAMETINYWFSDKGRRANFWRWEIILGAISGFSTSLITITFIMFLKQLLSSLHRPFAAWILFWRVNTVLIKRTCFLMAYSSFVAWLVIVYGKRLGLAEIFRFPIL*