AlfalfaGEDB | Msa0600430

M. sativa cultivar zhongmu-4 / Msa0600430

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005856 GO:0005874 GO:0008017 GO:0008092 GO:0015630 GO:0015631 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513
PFAM: PF00612.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600430	XP_024638331.1	98.106	264	5	0	1	264	1	264	0.0	536

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600430	sp\|F4J061\|IQD5_ARATH	63.060	268	84	3	1	264	1	257	2.94e-89	273

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0600430	0.816949	4.246818e-52	-8.615850e-47
Msa0031340	Msa0600430	0.812892	3.373521e-51	-8.615850e-47
Msa0043560	Msa0600430	0.817472	3.239611e-52	-8.615850e-47
Msa0046100	Msa0600430	0.826983	2.010582e-54	-8.615850e-47
Msa0052730	Msa0600430	0.813998	1.926985e-51	-8.615850e-47
Msa0061340	Msa0600430	0.810668	1.028043e-50	-8.615850e-47
Msa0086770	Msa0600430	0.834336	3.179349e-56	-8.615850e-47
Msa0101440	Msa0600430	0.800863	1.180381e-48	-8.615850e-47
Msa0124060	Msa0600430	0.809308	2.017645e-50	-8.615850e-47
Msa0152400	Msa0600430	0.809409	1.919928e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600430	MtrunA17_Chr4g0025441	97.727	264	5	1	1	264	1	263	0.0	530
Msa0600430	MtrunA17_Chr3g0135851	45.725	269	132	4	1	261	1	263	3.54e-55	183
Msa0600430	MtrunA17_Chr1g0200161	52.023	173	77	3	94	261	138	309	2.03e-51	174
Msa0600430	MtrunA17_Chr6g0462191	53.409	176	79	2	89	261	99	274	5.22e-48	164
Msa0600430	MtrunA17_Chr7g0263731	52.695	167	78	1	96	261	107	273	1.28e-45	159
Msa0600430	MtrunA17_Chr1g0181581	49.080	163	81	2	95	256	114	275	5.22e-45	157
Msa0600430	MtrunA17_Chr2g0316401	44.172	163	91	0	99	261	76	238	8.17e-45	153
Msa0600430	MtrunA17_Chr2g0283321	34.496	258	132	4	5	261	4	225	8.08e-43	147
Msa0600430	MtrunA17_Chr8g0346021	49.451	182	72	6	96	261	126	303	8.82e-41	147
Msa0600430	MtrunA17_Chr8g0342551	49.451	182	88	2	84	261	77	258	1.85e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0600430	AT3G22190.3	63.060	268	84	3	1	264	1	257	2.99e-90	273
Msa0600430	AT3G22190.2	63.060	268	84	3	1	264	1	257	2.99e-90	273
Msa0600430	AT3G22190.4	63.060	268	84	3	1	264	1	257	2.99e-90	273
Msa0600430	AT3G22190.1	63.060	268	84	3	1	264	1	257	2.99e-90	273
Msa0600430	AT2G26180.1	50.741	270	110	6	1	261	1	256	3.84e-66	211
Msa0600430	AT1G72670.1	41.199	267	145	4	1	261	1	261	1.77e-54	181
Msa0600430	AT5G03040.1	49.432	176	78	3	94	263	112	282	1.42e-50	172
Msa0600430	AT5G03040.3	49.432	176	78	3	94	263	112	282	1.42e-50	172
Msa0600430	AT5G03040.2	49.432	176	78	3	94	263	112	282	1.42e-50	172
Msa0600430	AT3G52290.1	50.000	168	79	3	96	261	107	271	2.05e-46	160

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Find 144 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGACAAATGTCACCTG+AGG	0.710839	4_2:-41646144	None:intergenic
AAACCTAAGCTCAATGGAGG+AGG	0.518311	4_2:+41646048	Msa0600430:three_prime_UTR
AAACTCACAAGTAGATAAAC+CGG	0.493615	4_2:+41645597	Msa0600430:three_prime_UTR
AAAGCAGTTGGGGTTGGAAT+TGG	0.353714	4_2:+41645211	Msa0600430:CDS
AAAGCGTGAATCCTTAGAGA+AGG	0.597984	4_2:+41641576	Msa0600430:CDS
AACAGCGTTTCGTGGATTTC+TGG	0.282468	4_2:+41642694	Msa0600430:CDS
AACCTAAGCTCAATGGAGGA+GGG	0.623588	4_2:+41646049	Msa0600430:three_prime_UTR
AACTACTCCATTCTCCATTG+AGG	0.601785	4_2:+41646120	Msa0600430:three_prime_UTR
AAGATCTCAAAGTAATCCAA+AGG	0.605081	4_2:+41645570	Msa0600430:three_prime_UTR
AAGATGAGAATGACACATTG+TGG	0.631772	4_2:+41646495	Msa0600430:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGCTCTTTCTATCTAATTTG+TGG	-	chr4_2:41640117-41640136	None:intergenic	30.0%
TTCTACACTGTATACGATTT+CGG	+	chr4_2:41641141-41641160	Msa0600430:intron	30.0%
AACATGCTTAACTGAAAGAA+AGG	-	chr4_2:41641356-41641375	None:intergenic	30.0%
AAATGAACTGAATTGGTATG+AGG	-	chr4_2:41641420-41641439	None:intergenic	30.0%
AGCCAAAAAATGAACTGAAT+TGG	-	chr4_2:41641427-41641446	None:intergenic	30.0%
GTTATATTCCTGAAATCCAA+AGG	+	chr4_2:41641816-41641835	Msa0600430:intron	30.0%
TTAATCAAACACACTTCCTT+TGG	-	chr4_2:41641835-41641854	None:intergenic	30.0%
ATACAAAAGACCAAGCATTA+AGG	+	chr4_2:41642072-41642091	Msa0600430:intron	30.0%
ATAAATCAGTCCTTAATGCT+TGG	-	chr4_2:41642085-41642104	None:intergenic	30.0%
CTGGCTATTCTATAATTTCA+TGG	+	chr4_2:41642382-41642401	Msa0600430:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	41640099	41646614	41640099	ID=Msa0600430;Name=Msa0600430
chr4_2	mRNA	41640099	41646614	41640099	ID=Msa0600430-mRNA-1;Parent=Msa0600430;Name=Msa0600430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=213\|1\|1\|1\|0.66\|0.57\|7\|1021\|265
chr4_2	exon	41640099	41640294	41640099	ID=Msa0600430-mRNA-1:exon:9087;Parent=Msa0600430-mRNA-1
chr4_2	exon	41641506	41641606	41641506	ID=Msa0600430-mRNA-1:exon:9088;Parent=Msa0600430-mRNA-1
chr4_2	exon	41642467	41642715	41642467	ID=Msa0600430-mRNA-1:exon:9089;Parent=Msa0600430-mRNA-1
chr4_2	exon	41643464	41643691	41643464	ID=Msa0600430-mRNA-1:exon:9090;Parent=Msa0600430-mRNA-1
chr4_2	exon	41643928	41644041	41643928	ID=Msa0600430-mRNA-1:exon:9091;Parent=Msa0600430-mRNA-1
chr4_2	exon	41645159	41645649	41645159	ID=Msa0600430-mRNA-1:exon:9092;Parent=Msa0600430-mRNA-1
chr4_2	exon	41645962	41646614	41645962	ID=Msa0600430-mRNA-1:exon:9093;Parent=Msa0600430-mRNA-1
chr4_2	five_prime_UTR	41640099	41640294	41640099	ID=Msa0600430-mRNA-1:five_prime_utr;Parent=Msa0600430-mRNA-1
chr4_2	five_prime_UTR	41641506	41641522	41641506	ID=Msa0600430-mRNA-1:five_prime_utr;Parent=Msa0600430-mRNA-1
chr4_2	CDS	41641523	41641606	41641523	ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2	CDS	41642467	41642715	41642467	ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2	CDS	41643464	41643691	41643464	ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2	CDS	41643928	41644041	41643928	ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2	CDS	41645159	41645281	41645159	ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2	three_prime_UTR	41645282	41645649	41645282	ID=Msa0600430-mRNA-1:three_prime_utr;Parent=Msa0600430-mRNA-1
chr4_2	three_prime_UTR	41645962	41646614	41645962	ID=Msa0600430-mRNA-1:three_prime_utr;Parent=Msa0600430-mRNA-1

Gene Sequence

>Msa0600430

ATGGGTGTCCCAGGCAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCGTGAATCCTTAGAGAAGGATGGAAATCAGGCTAGCAAGTTTTGCCATCGGAGAAAGAATTCCGTTGAAATTGACAACGGAAAACTTCAAAATGAGTTTGACAATGATGGTGCTGCACCTATTGGAGATGTAGATCATGCGAATCCCCAATCAAACCTTGAAGCCCATTATTCTCCTTCTACTTCACAACAAGTACAGGATCCTGCACATAATCATCAAATCACGAGCGAAGAATGGGCAGCAATATGCATTCAAACAGCGTTTCGTGGATTTCTGGCCAGGAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAAGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGAGTTCAGGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGTCATTGGAAAGTCAAACAGAACAACAGAAACTTCAGCAACAGCTTGTAAACGAAGCTCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATATTAAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGGCAGCAGGCCGTTTCTTCAGGATTTGAACCTGATAAAAGCAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGTCCTTGGGAGAAATCGTTTTCTTGA

Protein sequence

>Msa0600430

MGVPGKWIRALVGLKKSEKRESLEKDGNQASKFCHRRKNSVEIDNGKLQNEFDNDGAAPIGDVDHANPQSNLEAHYSPSTSQQVQDPAHNHQITSEEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLSLESQTEQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKSSWGWNWLERWMAVRPWEKSFS*