AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0600430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600430 MtrunA17_Chr4g0025441 97.727 264 5 1 1 264 1 263 0.0 530
Msa0600430 MtrunA17_Chr3g0135851 45.725 269 132 4 1 261 1 263 3.54e-55 183
Msa0600430 MtrunA17_Chr1g0200161 52.023 173 77 3 94 261 138 309 2.03e-51 174
Msa0600430 MtrunA17_Chr6g0462191 53.409 176 79 2 89 261 99 274 5.22e-48 164
Msa0600430 MtrunA17_Chr7g0263731 52.695 167 78 1 96 261 107 273 1.28e-45 159
Msa0600430 MtrunA17_Chr1g0181581 49.080 163 81 2 95 256 114 275 5.22e-45 157
Msa0600430 MtrunA17_Chr2g0316401 44.172 163 91 0 99 261 76 238 8.17e-45 153
Msa0600430 MtrunA17_Chr2g0283321 34.496 258 132 4 5 261 4 225 8.08e-43 147
Msa0600430 MtrunA17_Chr8g0346021 49.451 182 72 6 96 261 126 303 8.82e-41 147
Msa0600430 MtrunA17_Chr8g0342551 49.451 182 88 2 84 261 77 258 1.85e-37 137
Msa0600430 MtrunA17_Chr2g0330051 51.667 180 77 2 96 265 77 256 3.48e-35 130
Msa0600430 MtrunA17_Chr1g0146931 48.205 195 68 5 96 260 121 312 5.71e-33 125
Msa0600430 MtrunA17_Chr4g0045641 41.436 181 83 7 99 262 148 322 3.00e-31 121
Msa0600430 MtrunA17_Chr4g0020671 37.952 166 86 5 96 255 100 254 3.81e-26 105
Msa0600430 MtrunA17_Chr3g0126901 44.886 176 78 5 97 259 112 281 5.43e-26 105
Msa0600430 MtrunA17_Chr7g0273861 34.444 180 103 5 80 255 108 276 2.18e-25 103
Msa0600430 MtrunA17_Chr1g0204901 48.246 114 46 2 96 196 135 248 1.20e-24 102
Msa0600430 MtrunA17_Chr6g0472551 38.372 172 78 3 92 263 112 255 1.70e-23 99.0
Msa0600430 MtrunA17_Chr1g0203711 40.000 160 69 3 96 255 114 246 2.62e-23 98.2
Msa0600430 MtrunA17_Chr8g0340761 37.186 199 92 6 1 168 1 197 5.11e-23 97.1
Msa0600430 MtrunA17_Chr2g0330921 35.096 208 94 6 1 185 1 190 3.24e-22 94.4
Msa0600430 MtrunA17_Chr8g0389781 66.667 66 22 0 96 161 125 190 1.26e-21 93.6
Msa0600430 MtrunA17_Chr4g0060381 30.605 281 131 9 4 261 5 244 5.99e-21 92.0
Msa0600430 MtrunA17_Chr8g0371131 59.740 77 28 1 87 160 58 134 5.77e-20 83.6
Msa0600430 MtrunA17_Chr7g0273951 61.194 67 26 0 99 165 108 174 8.86e-20 87.8
Msa0600430 MtrunA17_Chr4g0057321 66.154 65 22 0 96 160 87 151 1.00e-18 85.1
Msa0600430 MtrunA17_Chr1g0166431 48.148 108 51 1 96 198 116 223 9.41e-18 82.4
Msa0600430 MtrunA17_Chr1g0156121 31.953 169 85 5 93 257 120 262 1.70e-17 82.0
Msa0600430 MtrunA17_Chr1g0172611 35.878 131 75 2 99 221 107 236 7.22e-15 73.6
Msa0600430 MtrunA17_Chr5g0416161 49.231 65 33 0 99 163 121 185 6.30e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0600430 AT3G22190.3 63.060 268 84 3 1 264 1 257 2.99e-90 273
Msa0600430 AT3G22190.2 63.060 268 84 3 1 264 1 257 2.99e-90 273
Msa0600430 AT3G22190.4 63.060 268 84 3 1 264 1 257 2.99e-90 273
Msa0600430 AT3G22190.1 63.060 268 84 3 1 264 1 257 2.99e-90 273
Msa0600430 AT2G26180.1 50.741 270 110 6 1 261 1 256 3.84e-66 211
Msa0600430 AT1G72670.1 41.199 267 145 4 1 261 1 261 1.77e-54 181
Msa0600430 AT5G03040.1 49.432 176 78 3 94 263 112 282 1.42e-50 172
Msa0600430 AT5G03040.3 49.432 176 78 3 94 263 112 282 1.42e-50 172
Msa0600430 AT5G03040.2 49.432 176 78 3 94 263 112 282 1.42e-50 172
Msa0600430 AT3G52290.1 50.000 168 79 3 96 261 107 271 2.05e-46 160
Msa0600430 AT3G09710.1 46.154 169 90 1 96 263 107 275 5.55e-43 152
Msa0600430 AT1G17480.1 37.066 259 136 6 1 252 1 239 1.61e-41 146
Msa0600430 AT4G00820.1 41.071 224 106 6 55 262 96 309 1.92e-41 149
Msa0600430 AT2G33990.1 40.936 171 100 1 95 265 45 214 2.55e-41 143
Msa0600430 AT3G15050.1 42.424 165 95 0 97 261 50 214 4.52e-41 142
Msa0600430 AT3G09710.2 43.716 183 88 3 96 263 107 289 1.13e-40 146
Msa0600430 AT3G49260.1 44.920 187 88 4 88 260 112 297 3.27e-40 145
Msa0600430 AT3G49260.4 44.920 187 88 4 88 260 112 297 3.27e-40 145
Msa0600430 AT3G49260.2 44.920 187 88 4 88 260 112 297 3.27e-40 145
Msa0600430 AT3G49260.3 44.681 188 88 5 88 260 112 298 1.14e-39 143
Msa0600430 AT2G26410.2 43.023 172 89 5 96 261 147 315 1.52e-35 133
Msa0600430 AT2G26410.1 43.023 172 89 5 96 261 147 315 1.52e-35 133
Msa0600430 AT1G01110.2 41.758 182 91 3 96 262 120 301 2.77e-34 129
Msa0600430 AT3G59690.2 44.586 157 74 6 100 253 172 318 1.71e-32 124
Msa0600430 AT3G59690.1 44.586 157 74 6 100 253 172 318 1.71e-32 124
Msa0600430 AT4G10640.1 40.104 192 88 4 98 265 101 289 9.58e-29 113
Msa0600430 AT5G13460.1 36.413 184 100 5 79 255 89 262 1.64e-26 107
Msa0600430 AT2G43680.1 38.994 159 81 6 99 253 325 471 6.22e-26 107
Msa0600430 AT2G43680.4 38.994 159 81 6 99 253 324 470 6.33e-26 107
Msa0600430 AT2G43680.2 38.994 159 81 6 99 253 324 470 6.33e-26 107
Msa0600430 AT2G43680.3 38.994 159 81 6 99 253 324 470 6.33e-26 107
Msa0600430 AT2G43680.5 38.994 159 81 6 99 253 324 470 6.33e-26 107
Msa0600430 AT4G14750.1 38.372 172 90 5 96 256 104 270 1.29e-23 99.0
Msa0600430 AT4G14750.2 38.372 172 90 5 96 256 163 329 1.88e-23 99.0
Msa0600430 AT4G14750.3 38.372 172 90 5 96 256 163 329 2.28e-23 99.0
Msa0600430 AT4G23060.1 60.976 82 32 0 89 170 159 240 1.89e-22 96.3
Msa0600430 AT3G16490.1 66.154 65 22 0 96 160 106 170 4.53e-21 91.7
Msa0600430 AT5G07240.1 71.875 64 17 1 95 157 103 166 2.64e-20 89.7
Msa0600430 AT5G07240.2 71.875 64 17 1 95 157 149 212 3.23e-20 89.7
Msa0600430 AT1G51960.1 59.211 76 30 1 93 167 95 170 4.33e-20 88.6
Msa0600430 AT1G19870.1 33.333 168 79 1 96 263 214 348 6.41e-20 89.4
Msa0600430 AT1G19870.2 33.333 168 79 1 96 263 31 165 6.81e-20 89.4
Msa0600430 AT1G18840.1 47.778 90 43 1 78 163 86 175 8.47e-20 89.0
Msa0600430 AT1G18840.3 47.778 90 43 1 78 163 86 175 8.47e-20 89.0
Msa0600430 AT1G18840.2 47.778 90 43 1 78 163 86 175 8.47e-20 89.0
Msa0600430 AT1G74690.1 41.538 130 62 3 39 163 59 179 4.33e-19 87.0
Msa0600430 AT1G14380.1 36.257 171 90 5 1 163 1 160 3.54e-18 84.3
Msa0600430 AT1G14380.3 36.257 171 90 5 1 163 1 160 3.54e-18 84.3
Msa0600430 AT1G14380.4 36.257 171 90 5 1 163 1 160 3.54e-18 84.3
Msa0600430 AT1G14380.6 36.257 171 90 5 1 163 1 160 4.06e-18 84.0
Msa0600430 AT1G14380.5 36.257 171 90 5 1 163 1 160 4.06e-18 84.0
Msa0600430 AT1G14380.2 36.257 171 90 5 1 163 1 160 4.06e-18 84.0
Msa0600430 AT1G14380.7 36.257 171 90 5 1 163 1 160 4.70e-18 84.0
Msa0600430 AT3G51380.1 64.615 65 23 0 94 158 34 98 6.57e-18 77.4
Msa0600430 AT5G62070.1 73.214 56 15 0 96 151 116 171 1.37e-17 82.0
Msa0600430 AT3G49380.1 64.615 65 23 0 99 163 112 176 1.45e-17 81.6
Msa0600430 AT4G29150.1 64.062 64 23 0 96 159 130 193 1.12e-16 79.3
Msa0600430 AT5G35670.1 35.976 164 95 4 96 258 159 313 2.95e-16 78.2
Msa0600430 AT5G03960.1 38.889 126 74 2 99 221 109 234 1.36e-13 70.5
Msa0600430 AT5G03960.3 38.889 126 74 2 99 221 110 235 1.36e-13 70.5
Msa0600430 AT5G03960.2 38.889 126 74 2 99 221 110 235 1.36e-13 70.5
Msa0600430 AT2G02790.2 46.269 67 36 0 97 163 107 173 4.40e-11 63.2
Msa0600430 AT2G02790.3 46.269 67 36 0 97 163 107 173 4.40e-11 63.2
Msa0600430 AT2G02790.1 46.269 67 36 0 97 163 107 173 6.89e-11 62.8

Find 144 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGTCTCTTTAATATTT+TGG 0.074947 4_2:-41643971 None:intergenic
TGAACATTTGCATTAGATTT+TGG 0.157733 4_2:-41645508 None:intergenic
GTTAGATCTGGTAGGATATT+TGG 0.217923 4_2:-41645986 None:intergenic
ACAACGCTTGGATGAATATT+TGG 0.234812 4_2:-41645385 None:intergenic
ACTTGTGAGTTTCTCTCCTT+TGG 0.258573 4_2:-41645586 None:intergenic
AGGCAGCAGGCCGTTTCTTC+AGG 0.270335 4_2:+41645174 Msa0600430:CDS
CACATTTCCATCCTTCTCTA+AGG 0.275439 4_2:-41641587 None:intergenic
AACAGCGTTTCGTGGATTTC+TGG 0.282468 4_2:+41642694 Msa0600430:CDS
GTAGCACGCAAAAGCCTATA+AGG 0.290736 4_2:+41646022 Msa0600430:three_prime_UTR
TGCTCTTTCTATCTAATTTG+TGG 0.308335 4_2:-41640114 None:intergenic
CACATCAGCGTCTTCATAGA+AGG 0.323047 4_2:-41646227 None:intergenic
AGCTTAGGTTTATCCCTTAT+AGG 0.329649 4_2:-41646036 None:intergenic
GTGAAGTAGAAGGAGAATAA+TGG 0.331113 4_2:-41642604 None:intergenic
GAGATTGGCTTGGGCTTTCA+TGG 0.335782 4_2:+41646261 Msa0600430:three_prime_UTR
AATGGGCTTCAAGGTTTGAT+TGG 0.343344 4_2:-41642586 None:intergenic
AAAGCAGTTGGGGTTGGAAT+TGG 0.353714 4_2:+41645211 Msa0600430:CDS
GAGAGTTCAGGCTCGTGTTC+GGG 0.366984 4_2:+41643577 Msa0600430:CDS
GCAAGCTTTGGTGAGAGTTC+AGG 0.371238 4_2:+41643565 Msa0600430:CDS
GTTGGAATTGGTTGGAAAGA+TGG 0.381054 4_2:+41645223 Msa0600430:CDS
ATGGGCTTCAAGGTTTGATT+GGG 0.381657 4_2:-41642585 None:intergenic
CCTGTGATTATTAGATGATT+CGG 0.383290 4_2:+41646559 Msa0600430:three_prime_UTR
GAAGAAACCAACTCAAAATC+TGG 0.385612 4_2:+41645541 Msa0600430:three_prime_UTR
TGTGGTTTGATTGTTGAGAT+TGG 0.397987 4_2:+41646246 Msa0600430:three_prime_UTR
TTACTGCATGGCCTCTTACA+AGG 0.407942 4_2:-41643511 None:intergenic
AAGGAGAATAATGGGCTTCA+AGG 0.408085 4_2:-41642595 None:intergenic
CTAAGCTAAGCTGTAGAACT+TGG 0.408834 4_2:+41640205 Msa0600430:five_prime_UTR
TGAGAGTTCAGGCTCGTGTT+CGG 0.416787 4_2:+41643576 Msa0600430:CDS
ATCCCTCCTCCATTGAGCTT+AGG 0.419990 4_2:-41646051 None:intergenic
ATCAAATCACGAGCGAAGAA+TGG 0.421607 4_2:+41642654 Msa0600430:CDS
TTGATTGTTGAGATTGGCTT+GGG 0.422069 4_2:+41646252 Msa0600430:three_prime_UTR
GATGTTATGGATGGTAGAAA+TGG 0.422170 4_2:+41645319 Msa0600430:three_prime_UTR
TGAACCTGATAAAAGCAGTT+GGG 0.424024 4_2:+41645200 Msa0600430:CDS
TGAAGTAGAAGGAGAATAAT+GGG 0.424231 4_2:-41642603 None:intergenic
AATGATGGTGCTGCACCTAT+TGG 0.424678 4_2:+41642542 Msa0600430:CDS
GGCATATGCTCTAGCTCATC+AGG 0.427400 4_2:+41644020 Msa0600430:CDS
TTTGAGTTGGTTTCTTCAAC+GGG 0.429692 4_2:-41645535 None:intergenic
TGCATTCAAACAGCGTTTCG+TGG 0.439864 4_2:+41642686 Msa0600430:CDS
GATGGATGGCTGTACGTCCT+TGG 0.444202 4_2:+41645241 Msa0600430:CDS
CAAAGCTCGTAGTGCTCTCC+TGG 0.445869 4_2:-41643465 None:intergenic
ATGGATGGCTGTACGTCCTT+GGG 0.447160 4_2:+41645242 Msa0600430:CDS
TCTCCGTTGTATGCAAGCTT+TGG 0.449466 4_2:+41643553 Msa0600430:CDS
GGTAGACGAAAATGATGTTA+TGG 0.450653 4_2:+41645306 Msa0600430:three_prime_UTR
AAGGCGTGTTCGCTTGTCAT+TGG 0.452023 4_2:+41643601 Msa0600430:CDS
TCCACTTTGCAGTGGCAGGC+AGG 0.454817 4_2:+41645147 Msa0600430:intron
AATGCTCTAATCCACTTGCC+TGG 0.459539 4_2:-41641532 None:intergenic
AGCCAAAATATTAAAGAGAC+AGG 0.460505 4_2:+41643969 Msa0600430:CDS
GCAGGCAGGATCAAGGCAGC+AGG 0.462311 4_2:+41645161 Msa0600430:CDS
CATTCTCCATTGAGGTCCTC+AGG 0.465743 4_2:+41646128 Msa0600430:three_prime_UTR
CAACGGAATTCTTTCTCCGA+TGG 0.469679 4_2:-41642484 None:intergenic
CTTGACATTAATACGAAGGA+TGG 0.470311 4_2:+41645277 Msa0600430:exon
TACTGCATGGCCTCTTACAA+GGG 0.472086 4_2:-41643510 None:intergenic
CTGATAAAAGCAGTTGGGGT+TGG 0.473450 4_2:+41645205 Msa0600430:CDS
TTTGATTGTTGAGATTGGCT+TGG 0.473573 4_2:+41646251 Msa0600430:three_prime_UTR
CAAAATGAGTTTGACAATGA+TGG 0.481901 4_2:+41642527 Msa0600430:CDS
TCAAATCACGAGCGAAGAAT+GGG 0.482710 4_2:+41642655 Msa0600430:CDS
TGTACTTGTTGTGAAGTAGA+AGG 0.484072 4_2:-41642614 None:intergenic
TGTGTGACGCAAAGGGTTGA+GGG 0.488823 4_2:+41646177 Msa0600430:three_prime_UTR
GCATGATCTACATCTCCAAT+AGG 0.489763 4_2:-41642557 None:intergenic
TGTCCCTTTCACGTTAGATC+TGG 0.490098 4_2:-41645998 None:intergenic
TTCAGGCTCGTGTTCGGGCA+AGG 0.490486 4_2:+41643582 Msa0600430:CDS
GGAGATTCCTCGTACAGTAT+TGG 0.492352 4_2:+41646516 Msa0600430:three_prime_UTR
AAACTCACAAGTAGATAAAC+CGG 0.493615 4_2:+41645597 Msa0600430:three_prime_UTR
ATGTGTGACGCAAAGGGTTG+AGG 0.493849 4_2:+41646176 Msa0600430:three_prime_UTR
AGCGTTGTCAGTCACAAAAC+CGG 0.494399 4_2:+41645400 Msa0600430:three_prime_UTR
CTACCAGATCTAACGTGAAA+GGG 0.494835 4_2:+41645995 Msa0600430:three_prime_UTR
CTTGTTTGGTACAGGAAGGT+TGG 0.497244 4_2:+41643914 Msa0600430:intron
AGGCAAGTGGATTAGAGCAT+TGG 0.498452 4_2:+41641534 Msa0600430:CDS
GAGAACAAACTCACCATGGT+TGG 0.502802 4_2:-41645641 None:intergenic
GAGCTTTGAAAGGATTGGTA+AGG 0.506231 4_2:+41643480 Msa0600430:CDS
AAGCTGTAGAACTTGGATGA+TGG 0.507177 4_2:+41640212 Msa0600430:five_prime_UTR
CAGTTGGGGTTGGAATTGGT+TGG 0.508731 4_2:+41645215 Msa0600430:CDS
TTCTACTTCACAACAAGTAC+AGG 0.509033 4_2:+41642616 Msa0600430:CDS
AGGCTTCAAGCCCTTGTAAG+AGG 0.511278 4_2:+41643500 Msa0600430:CDS
TCATGGTTATAAGATTTGTC+AGG 0.513664 4_2:+41646278 Msa0600430:three_prime_UTR
AGGTTCAAATCCTGAAGAAA+CGG 0.515201 4_2:-41645184 None:intergenic
AAACCTAAGCTCAATGGAGG+AGG 0.518311 4_2:+41646048 Msa0600430:three_prime_UTR
CTGAGGACCTCAATGGAGAA+TGG 0.518724 4_2:-41646127 None:intergenic
CCGAATCATCTAATAATCAC+AGG 0.519415 4_2:-41646559 None:intergenic
AGGGATAAACCTAAGCTCAA+TGG 0.520197 4_2:+41646042 Msa0600430:three_prime_UTR
ACTTGGCAATAGCAATAAAA+CGG 0.520321 4_2:-41646410 None:intergenic
AGAACAAACTCACCATGGTT+GGG 0.522573 4_2:-41645640 None:intergenic
TAGATTGCAATGGGTGTCCC+AGG 0.522581 4_2:+41641514 Msa0600430:exon
ACTACGAGCTTTGAAAGGAT+TGG 0.522803 4_2:+41643475 Msa0600430:CDS
GGTTTGTGCTAGATTGCAAT+GGG 0.527620 4_2:+41641505 Msa0600430:intron
TAAGAAAACACCTTTCAACT+TGG 0.529260 4_2:-41646427 None:intergenic
TAGCACGCAAAAGCCTATAA+GGG 0.529406 4_2:+41646023 Msa0600430:three_prime_UTR
GCCATCAGAAAGTGAAGGGC+CGG 0.529950 4_2:-41645419 None:intergenic
AGCTGTAGAACTTGGATGAT+GGG 0.530148 4_2:+41640213 Msa0600430:five_prime_UTR
ATTGCTATTGCCAAGTTGAA+AGG 0.530733 4_2:+41646417 Msa0600430:three_prime_UTR
GTGTTAGTAGACTTGAACTG+AGG 0.533731 4_2:-41645349 None:intergenic
TGCAGTGGCAGGCAGGATCA+AGG 0.534616 4_2:+41645154 Msa0600430:intron
ACCGGCCCTTCACTTTCTGA+TGG 0.540369 4_2:+41645418 Msa0600430:three_prime_UTR
CGTGAATCCTTAGAGAAGGA+TGG 0.540618 4_2:+41641580 Msa0600430:CDS
TTAATACTTAGTTACACAAG+TGG 0.541167 4_2:-41646095 None:intergenic
AGCAATAAAACGGAAGGCAG+TGG 0.542235 4_2:-41646400 None:intergenic
AGGTTTGTGCTAGATTGCAA+TGG 0.544057 4_2:+41641504 Msa0600430:intron
GAACCTGATAAAAGCAGTTG+GGG 0.546214 4_2:+41645201 Msa0600430:CDS
TCTTCCACTAGCAAGTCAGC+AGG 0.546756 4_2:+41645451 Msa0600430:three_prime_UTR
TTGAACCTGATAAAAGCAGT+TGG 0.552298 4_2:+41645199 Msa0600430:CDS
ATATTTGGCTGTTTGAGCCC+CGG 0.556821 4_2:-41645971 None:intergenic
CCTACCAGATCTAACGTGAA+AGG 0.557151 4_2:+41645994 Msa0600430:three_prime_UTR
TTTAGCAGGTGTTGGTTCCG+GGG 0.559787 4_2:+41645954 Msa0600430:intron
ATGCTCTAATCCACTTGCCT+GGG 0.560979 4_2:-41641531 None:intergenic
CTTCTATGAAGACGCTGATG+TGG 0.562709 4_2:+41646228 Msa0600430:three_prime_UTR
ATGTCACCTGAGGACCTCAA+TGG 0.564637 4_2:-41646134 None:intergenic
GTGATTTGATGATTATGTGC+AGG 0.572761 4_2:-41642641 None:intergenic
TGGATGATGGGAACTCAACT+CGG 0.575598 4_2:+41640225 Msa0600430:five_prime_UTR
GACGAAAATGATGTTATGGA+TGG 0.577697 4_2:+41645310 Msa0600430:three_prime_UTR
CAATGGGTGTCCCAGGCAAG+TGG 0.584203 4_2:+41641521 Msa0600430:exon
ACATGCAATGTGTGACGCAA+AGG 0.587195 4_2:+41646169 Msa0600430:three_prime_UTR
AGAGCACTACGAGCTTTGAA+AGG 0.590621 4_2:+41643470 Msa0600430:CDS
GGCAATAGCAATAAAACGGA+AGG 0.595588 4_2:-41646406 None:intergenic
CAAACCTGCTGACTTGCTAG+TGG 0.597084 4_2:-41645455 None:intergenic
AAAGCGTGAATCCTTAGAGA+AGG 0.597984 4_2:+41641576 Msa0600430:CDS
AACTACTCCATTCTCCATTG+AGG 0.601785 4_2:+41646120 Msa0600430:three_prime_UTR
GAATTGGTTGGAAAGATGGA+TGG 0.603840 4_2:+41645227 Msa0600430:CDS
AAGATCTCAAAGTAATCCAA+AGG 0.605081 4_2:+41645570 Msa0600430:three_prime_UTR
CAAGAAAACGATTTCTCCCA+AGG 0.609587 4_2:-41645258 None:intergenic
CATGCAATGTGTGACGCAAA+GGG 0.612688 4_2:+41646170 Msa0600430:three_prime_UTR
ACATCAGCGTCTTCATAGAA+GGG 0.614799 4_2:-41646226 None:intergenic
CACAGCCATCAGAAAGTGAA+GGG 0.617780 4_2:-41645423 None:intergenic
TCACAGCCATCAGAAAGTGA+AGG 0.617863 4_2:-41645424 None:intergenic
TAATACGAAGGATGGAGTGA+AGG 0.620363 4_2:+41645285 Msa0600430:three_prime_UTR
AACCTAAGCTCAATGGAGGA+GGG 0.623588 4_2:+41646049 Msa0600430:three_prime_UTR
AAGATGAGAATGACACATTG+TGG 0.631772 4_2:+41646495 Msa0600430:three_prime_UTR
AAGTGGATTAGAGCATTGGT+TGG 0.632093 4_2:+41641538 Msa0600430:CDS
CGATTATCTCTTCCCAACCA+TGG 0.632221 4_2:+41645628 Msa0600430:three_prime_UTR
CAAAATATTAAAGAGACAGG+AGG 0.633283 4_2:+41643972 Msa0600430:CDS
CCTTTCACGTTAGATCTGGT+AGG 0.633476 4_2:-41645994 None:intergenic
GTGTGACGCAAAGGGTTGAG+GGG 0.635369 4_2:+41646178 Msa0600430:three_prime_UTR
TGGGCTTCAAGGTTTGATTG+GGG 0.636004 4_2:-41642584 None:intergenic
AGCAAAACGTGAGAGAGCCA+TGG 0.642186 4_2:+41643999 Msa0600430:CDS
TCACCAAAGCTTGCATACAA+CGG 0.650453 4_2:-41643556 None:intergenic
GATAAACCTAAGCTCAATGG+AGG 0.654380 4_2:+41646045 Msa0600430:three_prime_UTR
GAAAACAATATCTAGAAACA+AGG 0.654980 4_2:-41646453 None:intergenic
GGAAGGTTGGTGTGACAGTG+TGG 0.655505 4_2:+41643927 Msa0600430:intron
TTACTTGCCAATACTGTACG+AGG 0.659018 4_2:-41646523 None:intergenic
AATTCCGTTGAAATTGACAA+CGG 0.663667 4_2:+41642497 Msa0600430:CDS
AGGGAGGAACATGTACATTG+TGG 0.667498 4_2:-41646207 None:intergenic
ATGAGCTAGAGCATATGCCA+TGG 0.669679 4_2:-41644016 None:intergenic
GAAGGTTGGTGTGACAGTGT+GGG 0.697609 4_2:+41643928 Msa0600430:CDS
TCAGCGTCTTCATAGAAGGG+AGG 0.707661 4_2:-41646223 None:intergenic
AAACAGACAAATGTCACCTG+AGG 0.710839 4_2:-41646144 None:intergenic
GTTGTGAGCTATGTATAATG+CGG 0.778329 4_2:+41646340 Msa0600430:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATATCTTATAATATTT+GGG - chr4_2:41642159-41642178 None:intergenic 10.0%
!! AAATATATGTTAATAAATAG+TGG - chr4_2:41642947-41642966 None:intergenic 10.0%
!! TTAATAAAACAAAATAACTA+TGG - chr4_2:41643711-41643730 None:intergenic 10.0%
!!! GTTATTTTGTTTTATTAATA+TGG + chr4_2:41643713-41643732 Msa0600430:intron 10.0%
!!! ATTTTCTTTTCTATAAATTA+AGG + chr4_2:41644323-41644342 Msa0600430:intron 10.0%
!!! TTTATTGAATTTAGAACTTT+AGG + chr4_2:41640491-41640510 Msa0600430:intron 15.0%
!! TTTAAACAAATGTAAGAAAT+GGG - chr4_2:41641208-41641227 None:intergenic 15.0%
!! GCAAAATATCTTATAATATT+TGG - chr4_2:41642160-41642179 None:intergenic 15.0%
!! CAATCAGATAAAAAAAAAAA+AGG - chr4_2:41642215-41642234 None:intergenic 15.0%
!!! TTTTTCCTTATTAATATGAT+AGG - chr4_2:41644639-41644658 None:intergenic 15.0%
!!! CTAGAATTTCATTAATTTTA+GGG - chr4_2:41644738-41644757 None:intergenic 15.0%
!!! ACTAGAATTTCATTAATTTT+AGG - chr4_2:41644739-41644758 None:intergenic 15.0%
!!! ATTGTTTTCTTTTAAGAAAT+TGG + chr4_2:41646467-41646486 Msa0600430:three_prime_UTR 15.0%
!! TGCTAAAAAGTAAGTAAAAA+GGG + chr4_2:41640286-41640305 Msa0600430:intron 20.0%
!!! ACAAAAAGTTTGAAACTTTT+AGG - chr4_2:41640434-41640453 None:intergenic 20.0%
!!! AAAGTTAAATTTTTGAATGC+TGG - chr4_2:41640460-41640479 None:intergenic 20.0%
!!! TATCTGTTGATTTATAACTA+AGG + chr4_2:41640563-41640582 Msa0600430:intron 20.0%
!!! TGTAAGATCTATTGTTTTTT+AGG + chr4_2:41640628-41640647 Msa0600430:intron 20.0%
!!! CATTTTTTTTCCATTTTTTG+TGG + chr4_2:41640728-41640747 Msa0600430:intron 20.0%
!! ACATAATTTAGTGTAATCAT+AGG + chr4_2:41640851-41640870 Msa0600430:intron 20.0%
!!! GTTTACATTTTTCTATTGAT+TGG + chr4_2:41640955-41640974 Msa0600430:intron 20.0%
!! TTAAACAAATGTAAGAAATG+GGG - chr4_2:41641207-41641226 None:intergenic 20.0%
!! CTTTAAACAAATGTAAGAAA+TGG - chr4_2:41641209-41641228 None:intergenic 20.0%
!!! AAGTCAATATTTGTTTTGAT+TGG - chr4_2:41641260-41641279 None:intergenic 20.0%
!! TCATTCAAATCTGTATATTA+AGG + chr4_2:41641874-41641893 Msa0600430:intron 20.0%
!! ATAGTTTAACAATATGAAAG+TGG - chr4_2:41642296-41642315 None:intergenic 20.0%
!!! TTATTTATCACAACATTTTG+AGG + chr4_2:41642740-41642759 Msa0600430:intron 20.0%
!! TTATCTCTTTATACTTGAAT+AGG + chr4_2:41642811-41642830 Msa0600430:intron 20.0%
!!! TATTACTTTTGCTTAGAATT+TGG + chr4_2:41642873-41642892 Msa0600430:intron 20.0%
!!! ATTACTTTTGCTTAGAATTT+GGG + chr4_2:41642874-41642893 Msa0600430:intron 20.0%
!!! CAGAATAAGTTTTTAAGTTA+GGG - chr4_2:41643374-41643393 None:intergenic 20.0%
!!! TCAGAATAAGTTTTTAAGTT+AGG - chr4_2:41643375-41643394 None:intergenic 20.0%
!! TAAAATTGCAAATTTCAAAG+AGG + chr4_2:41644236-41644255 Msa0600430:intron 20.0%
!! TTACATAGTAGTAAATGATT+AGG - chr4_2:41644479-41644498 None:intergenic 20.0%
!! TAATCATTTACTACTATGTA+AGG + chr4_2:41644478-41644497 Msa0600430:intron 20.0%
!! AATCATTTACTACTATGTAA+GGG + chr4_2:41644479-41644498 Msa0600430:intron 20.0%
!! AAGATCCTATCATATTAATA+AGG + chr4_2:41644631-41644650 Msa0600430:intron 20.0%
!! TTCATGAAATTAATAATCCT+TGG + chr4_2:41644761-41644780 Msa0600430:intron 20.0%
!! AATAAAACATTGCAAAATTG+GGG - chr4_2:41644918-41644937 None:intergenic 20.0%
!! GAATAAAACATTGCAAAATT+GGG - chr4_2:41644919-41644938 None:intergenic 20.0%
!! AGAATAAAACATTGCAAAAT+TGG - chr4_2:41644920-41644939 None:intergenic 20.0%
!! TTTGCAATTATAAGTATGAA+GGG + chr4_2:41644966-41644985 Msa0600430:intron 20.0%
!! TTATTCCCTTATATTATCTA+TGG + chr4_2:41645064-41645083 Msa0600430:intron 20.0%
!! ATAAACTGTCTAATCAAAAT+TGG - chr4_2:41645786-41645805 None:intergenic 20.0%
!! AATCTAACACATTATTCAAA+AGG - chr4_2:41645897-41645916 None:intergenic 20.0%
!! TGAATAATGTGTTAGATTAA+TGG + chr4_2:41645899-41645918 Msa0600430:intron 20.0%
!!! ACACACAAACACTATTTTTA+TGG - chr4_2:41640147-41640166 None:intergenic 25.0%
!!! CTTTTTACTTACTTTTTAGC+AGG - chr4_2:41640287-41640306 None:intergenic 25.0%
! CTGCTAAAAAGTAAGTAAAA+AGG + chr4_2:41640285-41640304 Msa0600430:intron 25.0%
!!! GAAACTTTTAGGAAGAAAAT+GGG - chr4_2:41640423-41640442 None:intergenic 25.0%
!!! TGAAACTTTTAGGAAGAAAA+TGG - chr4_2:41640424-41640443 None:intergenic 25.0%
! TCTTACAACAATTGAGATAA+TGG - chr4_2:41640615-41640634 None:intergenic 25.0%
!!! TTTTTTTCCATTTTTTGTGG+AGG + chr4_2:41640731-41640750 Msa0600430:intron 25.0%
!!! TACCAATTCAGTTCATTTTT+TGG + chr4_2:41641422-41641441 Msa0600430:intron 25.0%
! ACAAGTCATGAATAGTATAA+AGG - chr4_2:41641661-41641680 None:intergenic 25.0%
!! AGTTATTGCATTTGTACTTT+TGG + chr4_2:41641684-41641703 Msa0600430:intron 25.0%
!!! GTATGAGTTAATTTTTTTGG+CGG - chr4_2:41641755-41641774 None:intergenic 25.0%
! GCCAAAAAAATTAACTCATA+CGG + chr4_2:41641754-41641773 Msa0600430:intron 25.0%
!!! TCCGTATGAGTTAATTTTTT+TGG - chr4_2:41641758-41641777 None:intergenic 25.0%
!! TGATATTTTCAATAATCAGC+AGG + chr4_2:41642448-41642467 Msa0600430:intron 25.0%
! TCAAGTATAAAGAGATAAAG+AGG - chr4_2:41642809-41642828 None:intergenic 25.0%
! TCTGATACCAACTTAAATTT+GGG + chr4_2:41643084-41643103 Msa0600430:intron 25.0%
!! AAACATATTTTTCCCATTGA+TGG - chr4_2:41643219-41643238 None:intergenic 25.0%
!! ATGTTTTACCCTTAAAAATC+AGG + chr4_2:41643233-41643252 Msa0600430:intron 25.0%
! TAAAATGCTTATATCTACCA+AGG + chr4_2:41643272-41643291 Msa0600430:intron 25.0%
! CATTTCAAGATAAACAAATC+AGG - chr4_2:41643306-41643325 None:intergenic 25.0%
! TAAACATTTAGTTGCTAACA+AGG + chr4_2:41643401-41643420 Msa0600430:intron 25.0%
! AAATTTACGATTCCATCTAA+TGG + chr4_2:41644044-41644063 Msa0600430:intron 25.0%
! TCCATCTAATGGAAATTAAA+AGG + chr4_2:41644055-41644074 Msa0600430:intron 25.0%
! CCATCTAATGGAAATTAAAA+GGG + chr4_2:41644056-41644075 Msa0600430:intron 25.0%
!! AATTGCTATTCTAGTATATG+TGG + chr4_2:41644121-41644140 Msa0600430:intron 25.0%
! AAGTAATTACTTACATCTCA+CGG - chr4_2:41644190-41644209 None:intergenic 25.0%
!! GTTGGTTACATAATGTTTTA+GGG + chr4_2:41644284-41644303 Msa0600430:intron 25.0%
!!! TTACATAATGTTTTAGGGAA+AGG + chr4_2:41644289-41644308 Msa0600430:intron 25.0%
!! GCTATAAAATGTTTCTAAAC+AGG + chr4_2:41644348-41644367 Msa0600430:intron 25.0%
! GTTTATTGAGTCATAGAATA+TGG + chr4_2:41644420-41644439 Msa0600430:intron 25.0%
! ATCATTTACTACTATGTAAG+GGG + chr4_2:41644480-41644499 Msa0600430:intron 25.0%
! CTTTGCAATTATAAGTATGA+AGG + chr4_2:41644965-41644984 Msa0600430:intron 25.0%
! TGTGTCCATAGATAATATAA+GGG - chr4_2:41645072-41645091 None:intergenic 25.0%
! TTGTGTCCATAGATAATATA+AGG - chr4_2:41645073-41645092 None:intergenic 25.0%
! TAACTGAAAATATGAACCAA+AGG - chr4_2:41645105-41645124 None:intergenic 25.0%
!! TTTTCTTGACATTAATACGA+AGG + chr4_2:41645273-41645292 Msa0600430:exon 25.0%
!! TGAACATTTGCATTAGATTT+TGG - chr4_2:41645511-41645530 None:intergenic 25.0%
! GGTGATAATCTAATACAATA+AGG - chr4_2:41645681-41645700 None:intergenic 25.0%
!! TGTTTTATGTTAAGCAAACA+TGG - chr4_2:41645724-41645743 None:intergenic 25.0%
! ATTTGCGAATTTAGTATGAT+CGG - chr4_2:41645820-41645839 None:intergenic 25.0%
! ACACATTATTCAAAAGGATT+TGG - chr4_2:41645891-41645910 None:intergenic 25.0%
! CAAGACAAAAAACTTAGAAA+TGG - chr4_2:41645931-41645950 None:intergenic 25.0%
!!! TTTTTGTCTTGTATTTTAGC+AGG + chr4_2:41645940-41645959 Msa0600430:intron 25.0%
! TTAATACTTAGTTACACAAG+TGG - chr4_2:41646098-41646117 None:intergenic 25.0%
! GAAAACAATATCTAGAAACA+AGG - chr4_2:41646456-41646475 None:intergenic 25.0%
TGCTCTTTCTATCTAATTTG+TGG - chr4_2:41640117-41640136 None:intergenic 30.0%
!! TGCATCAATTTTAGTGTTTC+AGG + chr4_2:41640349-41640368 Msa0600430:intron 30.0%
!! TATGACCAATTGTTTCTGTA+TGG + chr4_2:41640674-41640693 Msa0600430:intron 30.0%
! TATTGATTGGCAAATGTTAG+TGG + chr4_2:41640968-41640987 Msa0600430:intron 30.0%
!! ATGTTAGTGGTTAGTTTGTT+AGG + chr4_2:41640981-41641000 Msa0600430:intron 30.0%
TTCTACACTGTATACGATTT+CGG + chr4_2:41641141-41641160 Msa0600430:intron 30.0%
AACATGCTTAACTGAAAGAA+AGG - chr4_2:41641356-41641375 None:intergenic 30.0%
AAATGAACTGAATTGGTATG+AGG - chr4_2:41641420-41641439 None:intergenic 30.0%
AGCCAAAAAATGAACTGAAT+TGG - chr4_2:41641427-41641446 None:intergenic 30.0%
! TCTATTATGATCGACTTCTT+TGG + chr4_2:41641458-41641477 Msa0600430:intron 30.0%
GTTATATTCCTGAAATCCAA+AGG + chr4_2:41641816-41641835 Msa0600430:intron 30.0%
TTAATCAAACACACTTCCTT+TGG - chr4_2:41641835-41641854 None:intergenic 30.0%
! CAGTTAAAGACCTGAAATTT+TGG + chr4_2:41641933-41641952 Msa0600430:intron 30.0%
ATACAAAAGACCAAGCATTA+AGG + chr4_2:41642072-41642091 Msa0600430:intron 30.0%
ATAAATCAGTCCTTAATGCT+TGG - chr4_2:41642085-41642104 None:intergenic 30.0%
CTGGCTATTCTATAATTTCA+TGG + chr4_2:41642382-41642401 Msa0600430:intron 30.0%
AATTCCGTTGAAATTGACAA+CGG + chr4_2:41642497-41642516 Msa0600430:CDS 30.0%
! TTTTCCGTTGTCAATTTCAA+CGG - chr4_2:41642504-41642523 None:intergenic 30.0%
CAAAATGAGTTTGACAATGA+TGG + chr4_2:41642527-41642546 Msa0600430:CDS 30.0%
TGAAGTAGAAGGAGAATAAT+GGG - chr4_2:41642606-41642625 None:intergenic 30.0%
! TTTTGCTTAGAATTTGGGTA+GGG + chr4_2:41642879-41642898 Msa0600430:intron 30.0%
CTTACAAACCAGTTTCATAA+GGG - chr4_2:41642913-41642932 None:intergenic 30.0%
TCTTACAAACCAGTTTCATA+AGG - chr4_2:41642914-41642933 None:intergenic 30.0%
!! TTAAGAGTACCACATTAGAT+GGG - chr4_2:41642981-41643000 None:intergenic 30.0%
CTCTGATACCAACTTAAATT+TGG + chr4_2:41643083-41643102 Msa0600430:intron 30.0%
!! CATACAAGTCAGTTTTGTAA+GGG - chr4_2:41643125-41643144 None:intergenic 30.0%
! CTGTAATGCCTGATTTTTAA+GGG - chr4_2:41643244-41643263 None:intergenic 30.0%
! ACTGTAATGCCTGATTTTTA+AGG - chr4_2:41643245-41643264 None:intergenic 30.0%
TTAAAAATCAGGCATTACAG+TGG + chr4_2:41643244-41643263 Msa0600430:intron 30.0%
CAAATCAGGAAAATAAACCT+TGG - chr4_2:41643292-41643311 None:intergenic 30.0%
CAACAAATCTAACCAAATGT+GGG + chr4_2:41643424-41643443 Msa0600430:intron 30.0%
AGCCAAAATATTAAAGAGAC+AGG + chr4_2:41643969-41643988 Msa0600430:CDS 30.0%
! CTCCTGTCTCTTTAATATTT+TGG - chr4_2:41643974-41643993 None:intergenic 30.0%
CAAAATATTAAAGAGACAGG+AGG + chr4_2:41643972-41643991 Msa0600430:CDS 30.0%
!!! CCCTTTTAATTTCCATTAGA+TGG - chr4_2:41644059-41644078 None:intergenic 30.0%
AATTGCAAATTTCAAAGAGG+AGG + chr4_2:41644239-41644258 Msa0600430:intron 30.0%
!! GGTTGGTTACATAATGTTTT+AGG + chr4_2:41644283-41644302 Msa0600430:intron 30.0%
!!! ATAATGTTTTAGGGAAAGGT+TGG + chr4_2:41644293-41644312 Msa0600430:intron 30.0%
!!! TAATGTTTTAGGGAAAGGTT+GGG + chr4_2:41644294-41644313 Msa0600430:intron 30.0%
AATTTGAAAATGAACTGCAG+AGG + chr4_2:41644552-41644571 Msa0600430:intron 30.0%
GATGATATTTGTGAAGCATA+TGG + chr4_2:41644659-41644678 Msa0600430:intron 30.0%
AATTTCAAAATGATCCCTCA+GGG - chr4_2:41644832-41644851 None:intergenic 30.0%
AAATTTCAAAATGATCCCTC+AGG - chr4_2:41644833-41644852 None:intergenic 30.0%
! TCTATGGAATTACAAGCTTT+TGG - chr4_2:41644879-41644898 None:intergenic 30.0%
TGTAATTCCATAGACGAAAT+TGG + chr4_2:41644885-41644904 Msa0600430:intron 30.0%
!!! GCATTAGATTTTGGTTTAAC+AGG - chr4_2:41645502-41645521 None:intergenic 30.0%
!!! TTTTGAGTTGGTTTCTTCAA+CGG - chr4_2:41645539-41645558 None:intergenic 30.0%
AAGATCTCAAAGTAATCCAA+AGG + chr4_2:41645570-41645589 Msa0600430:three_prime_UTR 30.0%
AAACTCACAAGTAGATAAAC+CGG + chr4_2:41645597-41645616 Msa0600430:three_prime_UTR 30.0%
TCATGGTTATAAGATTTGTC+AGG + chr4_2:41646278-41646297 Msa0600430:three_prime_UTR 30.0%
ACTTGGCAATAGCAATAAAA+CGG - chr4_2:41646413-41646432 None:intergenic 30.0%
TAAGAAAACACCTTTCAACT+TGG - chr4_2:41646430-41646449 None:intergenic 30.0%
CCTGTGATTATTAGATGATT+CGG + chr4_2:41646559-41646578 Msa0600430:three_prime_UTR 30.0%
TATAGATCCAGAGATGAGAA+AGG - chr4_2:41640389-41640408 None:intergenic 35.0%
GCATACCATACAGAAACAAT+TGG - chr4_2:41640682-41640701 None:intergenic 35.0%
TACTAGACAGTTATGAAGCA+CGG - chr4_2:41640932-41640951 None:intergenic 35.0%
!! TTAGTGGTTAGTTTGTTAGG+CGG + chr4_2:41640984-41641003 Msa0600430:intron 35.0%
TATACGATTTCGGTGGTTTA+AGG + chr4_2:41641151-41641170 Msa0600430:intron 35.0%
ATCTTCATAGTACTAGAGCA+TGG - chr4_2:41641234-41641253 None:intergenic 35.0%
AGCTTAGTCATAGTACTAAG+AGG - chr4_2:41641300-41641319 None:intergenic 35.0%
ACGAAGAAGCAAATAGCAAA+AGG - chr4_2:41641390-41641409 None:intergenic 35.0%
ACTGAATTGGTATGAGGTAT+GGG - chr4_2:41641414-41641433 None:intergenic 35.0%
AACTGAATTGGTATGAGGTA+TGG - chr4_2:41641415-41641434 None:intergenic 35.0%
!!! GTTAATTTTTTTGGCGGCAT+GGG - chr4_2:41641749-41641768 None:intergenic 35.0%
!!! AGTTAATTTTTTTGGCGGCA+TGG - chr4_2:41641750-41641769 None:intergenic 35.0%
ATATAACCAAGCAAGGTGAA+CGG - chr4_2:41641803-41641822 None:intergenic 35.0%
TTCAGGAATATAACCAAGCA+AGG - chr4_2:41641810-41641829 None:intergenic 35.0%
TAGTGAGAACTTAACAACGT+TGG - chr4_2:41641960-41641979 None:intergenic 35.0%
GTTGTTAAGTTCTCACTACA+AGG + chr4_2:41641962-41641981 Msa0600430:intron 35.0%
TCAACTCTATGTTCTGCTAT+CGG + chr4_2:41642031-41642050 Msa0600430:intron 35.0%
GTGAAGTAGAAGGAGAATAA+TGG - chr4_2:41642607-41642626 None:intergenic 35.0%
!! TGTACTTGTTGTGAAGTAGA+AGG - chr4_2:41642617-41642636 None:intergenic 35.0%
TTCTACTTCACAACAAGTAC+AGG + chr4_2:41642616-41642635 Msa0600430:CDS 35.0%
! GTGATTTGATGATTATGTGC+AGG - chr4_2:41642644-41642663 None:intergenic 35.0%
! CTTTTGCTTAGAATTTGGGT+AGG + chr4_2:41642878-41642897 Msa0600430:intron 35.0%
TTTGCTTAGAATTTGGGTAG+GGG + chr4_2:41642880-41642899 Msa0600430:intron 35.0%
GTTAACTACCCTTATGAAAC+TGG + chr4_2:41642902-41642921 Msa0600430:intron 35.0%
!! ACTGGTTTGTAAGATGATGA+CGG + chr4_2:41642920-41642939 Msa0600430:intron 35.0%
!! GTTAAGAGTACCACATTAGA+TGG - chr4_2:41642982-41643001 None:intergenic 35.0%
GTTGCAACCCAAATTTAAGT+TGG - chr4_2:41643094-41643113 None:intergenic 35.0%
!! ACTTAAATTTGGGTTGCAAC+TGG + chr4_2:41643094-41643113 Msa0600430:intron 35.0%
!! CCATACAAGTCAGTTTTGTA+AGG - chr4_2:41643126-41643145 None:intergenic 35.0%
!! CCTTACAAAACTGACTTGTA+TGG + chr4_2:41643123-41643142 Msa0600430:intron 35.0%
! CAAATGGGTTTATAAGTGGT+GGG - chr4_2:41643158-41643177 None:intergenic 35.0%
ACCACTTATAAACCCATTTG+CGG + chr4_2:41643158-41643177 Msa0600430:intron 35.0%
TCCTTAACACTTCCATCAAT+GGG + chr4_2:41643204-41643223 Msa0600430:intron 35.0%
GCAACAAATCTAACCAAATG+TGG + chr4_2:41643423-41643442 Msa0600430:intron 35.0%
TCACAAAATAGACCCACATT+TGG - chr4_2:41643439-41643458 None:intergenic 35.0%
! GTGGGTCTATTTTGTGAATT+AGG + chr4_2:41643442-41643461 Msa0600430:intron 35.0%
! TCTATTTTGTGAATTAGGCC+AGG + chr4_2:41643447-41643466 Msa0600430:intron 35.0%
ACATGACACAAGTGATCAAA+AGG - chr4_2:41643827-41643846 None:intergenic 35.0%
GTGTATTTCTCGTACTTGTT+TGG + chr4_2:41643900-41643919 Msa0600430:intron 35.0%
TATCATTAGTCCTTCTCATC+AGG + chr4_2:41644144-41644163 Msa0600430:intron 35.0%
TAATTACTTACATCTCACGG+TGG - chr4_2:41644187-41644206 None:intergenic 35.0%
AGGAGGTGGTTGATTAATTT+AGG + chr4_2:41644256-41644275 Msa0600430:intron 35.0%
GGAGGTGGTTGATTAATTTA+GGG + chr4_2:41644257-41644276 Msa0600430:intron 35.0%
TGGTTGATTAATTTAGGGAC+TGG + chr4_2:41644262-41644281 Msa0600430:intron 35.0%
! TGATTAATTTAGGGACTGGT+TGG + chr4_2:41644266-41644285 Msa0600430:intron 35.0%
!!! AATGTTTTAGGGAAAGGTTG+GGG + chr4_2:41644295-41644314 Msa0600430:intron 35.0%
TAAACAGAAGCTTCCAATGA+TGG - chr4_2:41644405-41644424 None:intergenic 35.0%
AATTAGAGCTCAATAGCAAC+TGG - chr4_2:41644449-41644468 None:intergenic 35.0%
ATTGACAAGAATTTGCATGC+AGG - chr4_2:41644531-41644550 None:intergenic 35.0%
TCAAAAATCACTGCAAGTGA+AGG - chr4_2:41644581-41644600 None:intergenic 35.0%
!!! GTCCCTAATATTTTAGCAGT+CGG + chr4_2:41644705-41644724 Msa0600430:intron 35.0%
!!! TCCCTAATATTTTAGCAGTC+GGG + chr4_2:41644706-41644725 Msa0600430:intron 35.0%
ACCCGACTGCTAAAATATTA+GGG - chr4_2:41644710-41644729 None:intergenic 35.0%
TACCCGACTGCTAAAATATT+AGG - chr4_2:41644711-41644730 None:intergenic 35.0%
!!! AATATTTTAGCAGTCGGGTA+TGG + chr4_2:41644711-41644730 Msa0600430:intron 35.0%
CAAAGGGAATTATATGACCA+AGG - chr4_2:41644781-41644800 None:intergenic 35.0%
TAAGGGAATAACAACTGACA+GGG - chr4_2:41645055-41645074 None:intergenic 35.0%
ATAAGGGAATAACAACTGAC+AGG - chr4_2:41645056-41645075 None:intergenic 35.0%
AGGTTCAAATCCTGAAGAAA+CGG - chr4_2:41645187-41645206 None:intergenic 35.0%
TTGAACCTGATAAAAGCAGT+TGG + chr4_2:41645199-41645218 Msa0600430:CDS 35.0%
TGAACCTGATAAAAGCAGTT+GGG + chr4_2:41645200-41645219 Msa0600430:CDS 35.0%
CTTGACATTAATACGAAGGA+TGG + chr4_2:41645277-41645296 Msa0600430:exon 35.0%
GGTAGACGAAAATGATGTTA+TGG + chr4_2:41645306-41645325 Msa0600430:three_prime_UTR 35.0%
GACGAAAATGATGTTATGGA+TGG + chr4_2:41645310-41645329 Msa0600430:three_prime_UTR 35.0%
GATGTTATGGATGGTAGAAA+TGG + chr4_2:41645319-41645338 Msa0600430:three_prime_UTR 35.0%
ACAACGCTTGGATGAATATT+TGG - chr4_2:41645388-41645407 None:intergenic 35.0%
!! TTTGAGTTGGTTTCTTCAAC+GGG - chr4_2:41645538-41645557 None:intergenic 35.0%
GAAGAAACCAACTCAAAATC+TGG + chr4_2:41645541-41645560 Msa0600430:three_prime_UTR 35.0%
!! TTGAACTCCAGATTTTGAGT+TGG - chr4_2:41645551-41645570 None:intergenic 35.0%
AATTGGAGAGTGATTCTTTG+CGG - chr4_2:41645769-41645788 None:intergenic 35.0%
ACAGTTTCCTTGTAAGTTAG+CGG + chr4_2:41645846-41645865 Msa0600430:intron 35.0%
!!! TCTTGTATTTTAGCAGGTGT+TGG + chr4_2:41645946-41645965 Msa0600430:intron 35.0%
GTTAGATCTGGTAGGATATT+TGG - chr4_2:41645989-41646008 None:intergenic 35.0%
AGCTTAGGTTTATCCCTTAT+AGG - chr4_2:41646039-41646058 None:intergenic 35.0%
TGTGGTTTGATTGTTGAGAT+TGG + chr4_2:41646246-41646265 Msa0600430:three_prime_UTR 35.0%
! TTTGATTGTTGAGATTGGCT+TGG + chr4_2:41646251-41646270 Msa0600430:three_prime_UTR 35.0%
!! TTGATTGTTGAGATTGGCTT+GGG + chr4_2:41646252-41646271 Msa0600430:three_prime_UTR 35.0%
GTTGTGAGCTATGTATAATG+CGG + chr4_2:41646340-41646359 Msa0600430:three_prime_UTR 35.0%
! ATTGCTATTGCCAAGTTGAA+AGG + chr4_2:41646417-41646436 Msa0600430:three_prime_UTR 35.0%
AAGATGAGAATGACACATTG+TGG + chr4_2:41646495-41646514 Msa0600430:three_prime_UTR 35.0%
CCGAATCATCTAATAATCAC+AGG - chr4_2:41646562-41646581 None:intergenic 35.0%
CTAAGCTAAGCTGTAGAACT+TGG + chr4_2:41640205-41640224 Msa0600430:five_prime_UTR 40.0%
AAGCTGTAGAACTTGGATGA+TGG + chr4_2:41640212-41640231 Msa0600430:five_prime_UTR 40.0%
AGCTGTAGAACTTGGATGAT+GGG + chr4_2:41640213-41640232 Msa0600430:five_prime_UTR 40.0%
AGCTTTACCTTTCTCATCTC+TGG + chr4_2:41640379-41640398 Msa0600430:intron 40.0%
!! CTTTTAGGAAGAAAATGGGC+AGG - chr4_2:41640419-41640438 None:intergenic 40.0%
GAAACTGCCTCCACAAAAAA+TGG - chr4_2:41640741-41640760 None:intergenic 40.0%
!! TAGTGGTTAGTTTGTTAGGC+GGG + chr4_2:41640985-41641004 Msa0600430:intron 40.0%
TACACTGTATACGATTTCGG+TGG + chr4_2:41641144-41641163 Msa0600430:intron 40.0%
TTTCGGTGGTTTAAGGATTG+AGG + chr4_2:41641158-41641177 Msa0600430:intron 40.0%
!! GACTTCTTTGGCATTGACTT+GGG + chr4_2:41641470-41641489 Msa0600430:intron 40.0%
ATTGCAATCTAGCACAAACC+TGG - chr4_2:41641505-41641524 None:intergenic 40.0%
AGGTTTGTGCTAGATTGCAA+TGG + chr4_2:41641504-41641523 Msa0600430:intron 40.0%
GGTTTGTGCTAGATTGCAAT+GGG + chr4_2:41641505-41641524 Msa0600430:intron 40.0%
!! AAGTGGATTAGAGCATTGGT+TGG + chr4_2:41641538-41641557 Msa0600430:CDS 40.0%
AAAGCGTGAATCCTTAGAGA+AGG + chr4_2:41641576-41641595 Msa0600430:CDS 40.0%
CACATTTCCATCCTTCTCTA+AGG - chr4_2:41641590-41641609 None:intergenic 40.0%
ACACACTTCCTTTGGATTTC+AGG - chr4_2:41641827-41641846 None:intergenic 40.0%
CAACGTTGGACCAAAATTTC+AGG - chr4_2:41641946-41641965 None:intergenic 40.0%
GCTGTTATCAACCTTCAGAA+TGG + chr4_2:41641984-41642003 Msa0600430:intron 40.0%
ACCTTCAGAATGGTAAACAC+TGG + chr4_2:41641994-41642013 Msa0600430:intron 40.0%
! AATGGTAAACACTGGCTATC+TGG + chr4_2:41642002-41642021 Msa0600430:intron 40.0%
!!! GTGAATGACGAGAGTGTTTT+TGG + chr4_2:41642234-41642253 Msa0600430:intron 40.0%
CTGCTTGACAAACTTCTTTC+TGG + chr4_2:41642363-41642382 Msa0600430:intron 40.0%
GCATGATCTACATCTCCAAT+AGG - chr4_2:41642560-41642579 None:intergenic 40.0%
ATGGGCTTCAAGGTTTGATT+GGG - chr4_2:41642588-41642607 None:intergenic 40.0%
! AATGGGCTTCAAGGTTTGAT+TGG - chr4_2:41642589-41642608 None:intergenic 40.0%
!! AAGGAGAATAATGGGCTTCA+AGG - chr4_2:41642598-41642617 None:intergenic 40.0%
ATCAAATCACGAGCGAAGAA+TGG + chr4_2:41642654-41642673 Msa0600430:CDS 40.0%
TCAAATCACGAGCGAAGAAT+GGG + chr4_2:41642655-41642674 Msa0600430:CDS 40.0%
GTACCACATTAGATGGGATA+AGG - chr4_2:41642975-41642994 None:intergenic 40.0%
! TGCTCTAGATGTTAAGTCCT+AGG - chr4_2:41643012-41643031 None:intergenic 40.0%
TACTATCTATCGGACCATTC+GGG - chr4_2:41643038-41643057 None:intergenic 40.0%
CTACTATCTATCGGACCATT+CGG - chr4_2:41643039-41643058 None:intergenic 40.0%
! GCAAATGGGTTTATAAGTGG+TGG - chr4_2:41643159-41643178 None:intergenic 40.0%
CCACTTATAAACCCATTTGC+GGG + chr4_2:41643159-41643178 Msa0600430:intron 40.0%
CTCCTTAACACTTCCATCAA+TGG + chr4_2:41643203-41643222 Msa0600430:intron 40.0%
!! TCCCATTGATGGAAGTGTTA+AGG - chr4_2:41643208-41643227 None:intergenic 40.0%
!! ACTACGAGCTTTGAAAGGAT+TGG + chr4_2:41643475-41643494 Msa0600430:CDS 40.0%
!! GAGCTTTGAAAGGATTGGTA+AGG + chr4_2:41643480-41643499 Msa0600430:CDS 40.0%
!! CAGCTTGTTTTCTTACTGCA+TGG - chr4_2:41643526-41643545 None:intergenic 40.0%
TCACCAAAGCTTGCATACAA+CGG - chr4_2:41643559-41643578 None:intergenic 40.0%
TTCTCGTACTTGTTTGGTAC+AGG + chr4_2:41643906-41643925 Msa0600430:intron 40.0%
TGCAAATTTCAAAGAGGAGG+TGG + chr4_2:41644242-41644261 Msa0600430:intron 40.0%
!!! ATGTTTTAGGGAAAGGTTGG+GGG + chr4_2:41644296-41644315 Msa0600430:intron 40.0%
GTTCTACGATCATCCATCAT+TGG + chr4_2:41644389-41644408 Msa0600430:intron 40.0%
GACACAACACATTGTTCCTT+TGG + chr4_2:41645086-41645105 Msa0600430:intron 40.0%
GAACCTGATAAAAGCAGTTG+GGG + chr4_2:41645201-41645220 Msa0600430:CDS 40.0%
GTTGGAATTGGTTGGAAAGA+TGG + chr4_2:41645223-41645242 Msa0600430:CDS 40.0%
GAATTGGTTGGAAAGATGGA+TGG + chr4_2:41645227-41645246 Msa0600430:CDS 40.0%
CAAGAAAACGATTTCTCCCA+AGG - chr4_2:41645261-41645280 None:intergenic 40.0%
TAATACGAAGGATGGAGTGA+AGG + chr4_2:41645285-41645304 Msa0600430:three_prime_UTR 40.0%
GTGTTAGTAGACTTGAACTG+AGG - chr4_2:41645352-41645371 None:intergenic 40.0%
ACTTGTGAGTTTCTCTCCTT+TGG - chr4_2:41645589-41645608 None:intergenic 40.0%
!!! AGAGATAATCGCTTTTTCGC+CGG - chr4_2:41645619-41645638 None:intergenic 40.0%
AGAACAAACTCACCATGGTT+GGG - chr4_2:41645643-41645662 None:intergenic 40.0%
GAAAGAGAACAAACTCACCA+TGG - chr4_2:41645648-41645667 None:intergenic 40.0%
ATTGGAGAGTGATTCTTTGC+GGG - chr4_2:41645768-41645787 None:intergenic 40.0%
CAGTTTCCTTGTAAGTTAGC+GGG + chr4_2:41645847-41645866 Msa0600430:intron 40.0%
TCTTATCCCGCTAACTTACA+AGG - chr4_2:41645856-41645875 None:intergenic 40.0%
!!! ATTTTAGCAGGTGTTGGTTC+CGG + chr4_2:41645952-41645971 Msa0600430:intron 40.0%
CTACCAGATCTAACGTGAAA+GGG + chr4_2:41645995-41646014 Msa0600430:three_prime_UTR 40.0%
TAGCACGCAAAAGCCTATAA+GGG + chr4_2:41646023-41646042 Msa0600430:three_prime_UTR 40.0%
AGGGATAAACCTAAGCTCAA+TGG + chr4_2:41646042-41646061 Msa0600430:three_prime_UTR 40.0%
GATAAACCTAAGCTCAATGG+AGG + chr4_2:41646045-41646064 Msa0600430:three_prime_UTR 40.0%
AACTACTCCATTCTCCATTG+AGG + chr4_2:41646120-41646139 Msa0600430:three_prime_UTR 40.0%
AAACAGACAAATGTCACCTG+AGG - chr4_2:41646147-41646166 None:intergenic 40.0%
ACATCAGCGTCTTCATAGAA+GGG - chr4_2:41646229-41646248 None:intergenic 40.0%
GGCAATAGCAATAAAACGGA+AGG - chr4_2:41646409-41646428 None:intergenic 40.0%
TTACTTGCCAATACTGTACG+AGG - chr4_2:41646526-41646545 None:intergenic 40.0%
!! TGGATGATGGGAACTCAACT+CGG + chr4_2:41640225-41640244 Msa0600430:five_prime_UTR 45.0%
AAGGTGTATGTTGGAGGTCA+GGG - chr4_2:41641038-41641057 None:intergenic 45.0%
! AAAGGTGTATGTTGGAGGTC+AGG - chr4_2:41641039-41641058 None:intergenic 45.0%
ACCTCCAACATACACCTTTG+CGG + chr4_2:41641040-41641059 Msa0600430:intron 45.0%
!! CGACTTCTTTGGCATTGACT+TGG + chr4_2:41641469-41641488 Msa0600430:intron 45.0%
! TGACTTGGGAGAAAATTGCC+AGG + chr4_2:41641484-41641503 Msa0600430:intron 45.0%
ATGCTCTAATCCACTTGCCT+GGG - chr4_2:41641534-41641553 None:intergenic 45.0%
AATGCTCTAATCCACTTGCC+TGG - chr4_2:41641535-41641554 None:intergenic 45.0%
!! AGGCAAGTGGATTAGAGCAT+TGG + chr4_2:41641534-41641553 Msa0600430:CDS 45.0%
CGTGAATCCTTAGAGAAGGA+TGG + chr4_2:41641580-41641599 Msa0600430:CDS 45.0%
GACAGAGAGAGATTGAGAGA+GGG - chr4_2:41641620-41641639 None:intergenic 45.0%
AGACAGAGAGAGATTGAGAG+AGG - chr4_2:41641621-41641640 None:intergenic 45.0%
!!! AATTTTTTTGGCGGCATGGG+AGG - chr4_2:41641746-41641765 None:intergenic 45.0%
TTTCTACCGTTCACCTTGCT+TGG + chr4_2:41641794-41641813 Msa0600430:intron 45.0%
GCCAGTGTTTACCATTCTGA+AGG - chr4_2:41641998-41642017 None:intergenic 45.0%
! AGGCTAGCAAGTTTTGCCAT+CGG + chr4_2:41642468-41642487 Msa0600430:CDS 45.0%
CAACGGAATTCTTTCTCCGA+TGG - chr4_2:41642487-41642506 None:intergenic 45.0%
!! AATGATGGTGCTGCACCTAT+TGG + chr4_2:41642542-41642561 Msa0600430:CDS 45.0%
TGGGCTTCAAGGTTTGATTG+GGG - chr4_2:41642587-41642606 None:intergenic 45.0%
TGCATTCAAACAGCGTTTCG+TGG + chr4_2:41642686-41642705 Msa0600430:CDS 45.0%
AACAGCGTTTCGTGGATTTC+TGG + chr4_2:41642694-41642713 Msa0600430:CDS 45.0%
! AGGCCTTATCCCATCTAATG+TGG + chr4_2:41642969-41642988 Msa0600430:intron 45.0%
TACTCTTAACACACACGCCT+AGG + chr4_2:41642992-41643011 Msa0600430:intron 45.0%
CGAATGGTCCGATAGATAGT+AGG + chr4_2:41643037-41643056 Msa0600430:intron 45.0%
ATGGTCCGATAGATAGTAGG+TGG + chr4_2:41643040-41643059 Msa0600430:intron 45.0%
TTGGGCCACCTACTATCTAT+CGG - chr4_2:41643048-41643067 None:intergenic 45.0%
TAGGTGGCCCAACAAATCAT+GGG + chr4_2:41643056-41643075 Msa0600430:intron 45.0%
!! GAGCCTACCCATGATTTGTT+GGG - chr4_2:41643066-41643085 None:intergenic 45.0%
! AGAGCCTACCCATGATTTGT+TGG - chr4_2:41643067-41643086 None:intergenic 45.0%
! CCCGCAAATGGGTTTATAAG+TGG - chr4_2:41643162-41643181 None:intergenic 45.0%
ATGAGATAAGGCCCGCAAAT+GGG - chr4_2:41643173-41643192 None:intergenic 45.0%
AGTCCACCTTGGATGAGATA+AGG - chr4_2:41643185-41643204 None:intergenic 45.0%
AAGTGTTAAGGAGTCCACCT+TGG - chr4_2:41643196-41643215 None:intergenic 45.0%
!! AGAGCACTACGAGCTTTGAA+AGG + chr4_2:41643470-41643489 Msa0600430:CDS 45.0%
TACTGCATGGCCTCTTACAA+GGG - chr4_2:41643513-41643532 None:intergenic 45.0%
TTACTGCATGGCCTCTTACA+AGG - chr4_2:41643514-41643533 None:intergenic 45.0%
TCTCCGTTGTATGCAAGCTT+TGG + chr4_2:41643553-41643572 Msa0600430:CDS 45.0%
CGTACTTGTTTGGTACAGGA+AGG + chr4_2:41643910-41643929 Msa0600430:intron 45.0%
CTTGTTTGGTACAGGAAGGT+TGG + chr4_2:41643914-41643933 Msa0600430:intron 45.0%
ATGAGCTAGAGCATATGCCA+TGG - chr4_2:41644019-41644038 None:intergenic 45.0%
CAATCAAGGACCTGATGAGA+AGG - chr4_2:41644157-41644176 None:intergenic 45.0%
ACGGTGGAGCATAACAATCA+AGG - chr4_2:41644171-41644190 None:intergenic 45.0%
!!! TGTTTTAGGGAAAGGTTGGG+GGG + chr4_2:41644297-41644316 Msa0600430:intron 45.0%
ACTATGTAAGGGGAAAACCG+TGG + chr4_2:41644490-41644509 Msa0600430:intron 45.0%
CTATGTAAGGGGAAAACCGT+GGG + chr4_2:41644491-41644510 Msa0600430:intron 45.0%
TATGTAAGGGGAAAACCGTG+GGG + chr4_2:41644492-41644511 Msa0600430:intron 45.0%
GTCGATGAGATTGACGCAAA+GGG - chr4_2:41644797-41644816 None:intergenic 45.0%
AGTCGATGAGATTGACGCAA+AGG - chr4_2:41644798-41644817 None:intergenic 45.0%
!! ACTAAGTTGATCGACCCTGA+GGG + chr4_2:41644815-41644834 Msa0600430:intron 45.0%
TCGATCGCCAATTTCGTCTA+TGG - chr4_2:41644895-41644914 None:intergenic 45.0%
! TCCTCTTTTCCACTTTGCAG+TGG + chr4_2:41645139-41645158 Msa0600430:intron 45.0%
!! CAACCCCAACTGCTTTTATC+AGG - chr4_2:41645207-41645226 None:intergenic 45.0%
CTGATAAAAGCAGTTGGGGT+TGG + chr4_2:41645205-41645224 Msa0600430:CDS 45.0%
AAAGCAGTTGGGGTTGGAAT+TGG + chr4_2:41645211-41645230 Msa0600430:CDS 45.0%
! GTTTTGTGACTGACAACGCT+TGG - chr4_2:41645400-41645419 None:intergenic 45.0%
AGCGTTGTCAGTCACAAAAC+CGG + chr4_2:41645400-41645419 Msa0600430:three_prime_UTR 45.0%
CACAGCCATCAGAAAGTGAA+GGG - chr4_2:41645426-41645445 None:intergenic 45.0%
TCACAGCCATCAGAAAGTGA+AGG - chr4_2:41645427-41645446 None:intergenic 45.0%
CGATTATCTCTTCCCAACCA+TGG + chr4_2:41645628-41645647 Msa0600430:three_prime_UTR 45.0%
GAGAACAAACTCACCATGGT+TGG - chr4_2:41645644-41645663 None:intergenic 45.0%
!!! TTTTAGCAGGTGTTGGTTCC+GGG + chr4_2:41645953-41645972 Msa0600430:intron 45.0%
ATATTTGGCTGTTTGAGCCC+CGG - chr4_2:41645974-41645993 None:intergenic 45.0%
CCTTTCACGTTAGATCTGGT+AGG - chr4_2:41645997-41646016 None:intergenic 45.0%
CCTACCAGATCTAACGTGAA+AGG + chr4_2:41645994-41646013 Msa0600430:three_prime_UTR 45.0%
TGTCCCTTTCACGTTAGATC+TGG - chr4_2:41646001-41646020 None:intergenic 45.0%
GTAGCACGCAAAAGCCTATA+AGG + chr4_2:41646022-41646041 Msa0600430:three_prime_UTR 45.0%
AAACCTAAGCTCAATGGAGG+AGG + chr4_2:41646048-41646067 Msa0600430:three_prime_UTR 45.0%
AACCTAAGCTCAATGGAGGA+GGG + chr4_2:41646049-41646068 Msa0600430:three_prime_UTR 45.0%
ACATGCAATGTGTGACGCAA+AGG + chr4_2:41646169-41646188 Msa0600430:three_prime_UTR 45.0%
CATGCAATGTGTGACGCAAA+GGG + chr4_2:41646170-41646189 Msa0600430:three_prime_UTR 45.0%
AGGGAGGAACATGTACATTG+TGG - chr4_2:41646210-41646229 None:intergenic 45.0%
CACATCAGCGTCTTCATAGA+AGG - chr4_2:41646230-41646249 None:intergenic 45.0%
CTTCTATGAAGACGCTGATG+TGG + chr4_2:41646228-41646247 Msa0600430:three_prime_UTR 45.0%
AGCAATAAAACGGAAGGCAG+TGG - chr4_2:41646403-41646422 None:intergenic 45.0%
GGAGATTCCTCGTACAGTAT+TGG + chr4_2:41646516-41646535 Msa0600430:three_prime_UTR 45.0%
!!! ATTTATTAACATATATTTTT+AGG + chr4_2:41642949-41642968 Msa0600430:intron 5.0%
! CATAGGTGCCATGTCAGTGT+CGG + chr4_2:41640868-41640887 Msa0600430:intron 50.0%
GATTAGGTGTGTCCTGGTGT+CGG - chr4_2:41640899-41640918 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr4_2:41640921-41640940 None:intergenic 50.0%
!! TGGTTAGTTTGTTAGGCGGG+AGG + chr4_2:41640988-41641007 Msa0600430:intron 50.0%
CCTCCAACATACACCTTTGC+GGG + chr4_2:41641041-41641060 Msa0600430:intron 50.0%
CTCCAACATACACCTTTGCG+GGG + chr4_2:41641042-41641061 Msa0600430:intron 50.0%
TAGATTGCAATGGGTGTCCC+AGG + chr4_2:41641514-41641533 Msa0600430:exon 50.0%
! CATCTAGAGCATGACCCGAA+TGG + chr4_2:41643021-41643040 Msa0600430:intron 50.0%
GTAGGTGGCCCAACAAATCA+TGG + chr4_2:41643055-41643074 Msa0600430:intron 50.0%
TGGCCCAACAAATCATGGGT+AGG + chr4_2:41643060-41643079 Msa0600430:intron 50.0%
GATGAGATAAGGCCCGCAAA+TGG - chr4_2:41643174-41643193 None:intergenic 50.0%
AGGCTTCAAGCCCTTGTAAG+AGG + chr4_2:41643500-41643519 Msa0600430:CDS 50.0%
! GCAAGCTTTGGTGAGAGTTC+AGG + chr4_2:41643565-41643584 Msa0600430:CDS 50.0%
TGAGAGTTCAGGCTCGTGTT+CGG + chr4_2:41643576-41643595 Msa0600430:CDS 50.0%
AAGGCGTGTTCGCTTGTCAT+TGG + chr4_2:41643601-41643620 Msa0600430:CDS 50.0%
!! GAAGGTTGGTGTGACAGTGT+GGG + chr4_2:41643928-41643947 Msa0600430:CDS 50.0%
AGCAAAACGTGAGAGAGCCA+TGG + chr4_2:41643999-41644018 Msa0600430:CDS 50.0%
! GGCATATGCTCTAGCTCATC+AGG + chr4_2:41644020-41644039 Msa0600430:CDS 50.0%
ATGTAAGGGGAAAACCGTGG+GGG + chr4_2:41644493-41644512 Msa0600430:intron 50.0%
AAACCGTGGGGGAACTGTAT+TGG + chr4_2:41644504-41644523 Msa0600430:intron 50.0%
!! GACTAAGTTGATCGACCCTG+AGG + chr4_2:41644814-41644833 Msa0600430:intron 50.0%
GCCACTGCAAAGTGGAAAAG+AGG - chr4_2:41645143-41645162 None:intergenic 50.0%
! CTTTTCCACTTTGCAGTGGC+AGG + chr4_2:41645143-41645162 Msa0600430:intron 50.0%
CAGTTGGGGTTGGAATTGGT+TGG + chr4_2:41645215-41645234 Msa0600430:CDS 50.0%
ATGGATGGCTGTACGTCCTT+GGG + chr4_2:41645242-41645261 Msa0600430:CDS 50.0%
TCTTCCACTAGCAAGTCAGC+AGG + chr4_2:41645451-41645470 Msa0600430:three_prime_UTR 50.0%
!! CAAACCTGCTGACTTGCTAG+TGG - chr4_2:41645458-41645477 None:intergenic 50.0%
GATGATGTTAGCACTCGCAG+AGG - chr4_2:41645702-41645721 None:intergenic 50.0%
!! TTTAGCAGGTGTTGGTTCCG+GGG + chr4_2:41645954-41645973 Msa0600430:intron 50.0%
ATCCCTCCTCCATTGAGCTT+AGG - chr4_2:41646054-41646073 None:intergenic 50.0%
CTGAGGACCTCAATGGAGAA+TGG - chr4_2:41646130-41646149 None:intergenic 50.0%
CATTCTCCATTGAGGTCCTC+AGG + chr4_2:41646128-41646147 Msa0600430:three_prime_UTR 50.0%
ATGTCACCTGAGGACCTCAA+TGG - chr4_2:41646137-41646156 None:intergenic 50.0%
ATGTGTGACGCAAAGGGTTG+AGG + chr4_2:41646176-41646195 Msa0600430:three_prime_UTR 50.0%
TGTGTGACGCAAAGGGTTGA+GGG + chr4_2:41646177-41646196 Msa0600430:three_prime_UTR 50.0%
TCAGCGTCTTCATAGAAGGG+AGG - chr4_2:41646226-41646245 None:intergenic 50.0%
!! GAGATTGGCTTGGGCTTTCA+TGG + chr4_2:41646261-41646280 Msa0600430:three_prime_UTR 50.0%
CGGACAAACCGACACTGACA+TGG - chr4_2:41640879-41640898 None:intergenic 55.0%
ACCAGGACACACCTAATCCG+AGG + chr4_2:41640901-41640920 Msa0600430:intron 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG - chr4_2:41640905-41640924 None:intergenic 55.0%
! CCCGCAAAGGTGTATGTTGG+AGG - chr4_2:41641044-41641063 None:intergenic 55.0%
! GTCCCCGCAAAGGTGTATGT+TGG - chr4_2:41641047-41641066 None:intergenic 55.0%
! TGCGGGCCTTATCTCATCCA+AGG + chr4_2:41643176-41643195 Msa0600430:intron 55.0%
! GGGCCTTATCTCATCCAAGG+TGG + chr4_2:41643179-41643198 Msa0600430:intron 55.0%
CAAAGCTCGTAGTGCTCTCC+TGG - chr4_2:41643468-41643487 None:intergenic 55.0%
GAGAGTTCAGGCTCGTGTTC+GGG + chr4_2:41643577-41643596 Msa0600430:CDS 55.0%
!! GGAAGGTTGGTGTGACAGTG+TGG + chr4_2:41643927-41643946 Msa0600430:intron 55.0%
GGACCAATACAGTTCCCCCA+CGG - chr4_2:41644510-41644529 None:intergenic 55.0%
GATGGATGGCTGTACGTCCT+TGG + chr4_2:41645241-41645260 Msa0600430:CDS 55.0%
ACCGGCCCTTCACTTTCTGA+TGG + chr4_2:41645418-41645437 Msa0600430:three_prime_UTR 55.0%
GCCATCAGAAAGTGAAGGGC+CGG - chr4_2:41645422-41645441 None:intergenic 55.0%
GTGTGACGCAAAGGGTTGAG+GGG + chr4_2:41646178-41646197 Msa0600430:three_prime_UTR 55.0%
!! GTGTCGGTTTGTCCGACACC+AGG + chr4_2:41640884-41640903 Msa0600430:intron 60.0%
GCACGGACACTCCTCGGATT+AGG - chr4_2:41640915-41640934 None:intergenic 60.0%
TACACCTTTGCGGGGACTCG+TGG + chr4_2:41641050-41641069 Msa0600430:intron 60.0%
ACACCTTTGCGGGGACTCGT+GGG + chr4_2:41641051-41641070 Msa0600430:intron 60.0%
CAATGGGTGTCCCAGGCAAG+TGG + chr4_2:41641521-41641540 Msa0600430:exon 60.0%
TTCAGGCTCGTGTTCGGGCA+AGG + chr4_2:41643582-41643601 Msa0600430:CDS 60.0%
TCCACTTTGCAGTGGCAGGC+AGG + chr4_2:41645147-41645166 Msa0600430:intron 60.0%
TCCTGCCTGCCACTGCAAAG+TGG - chr4_2:41645151-41645170 None:intergenic 60.0%
TGCAGTGGCAGGCAGGATCA+AGG + chr4_2:41645154-41645173 Msa0600430:intron 60.0%
AGGCAGCAGGCCGTTTCTTC+AGG + chr4_2:41645174-41645193 Msa0600430:CDS 60.0%
CACCTTTGCGGGGACTCGTG+GGG + chr4_2:41641052-41641071 Msa0600430:intron 65.0%
ATCCCCACGAGTCCCCGCAA+AGG - chr4_2:41641057-41641076 None:intergenic 65.0%
TTTGCGGGGACTCGTGGGGA+TGG + chr4_2:41641056-41641075 Msa0600430:intron 65.0%
GCAGGCAGGATCAAGGCAGC+AGG + chr4_2:41645161-41645180 Msa0600430:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 41640099 41646614 41640099 ID=Msa0600430;Name=Msa0600430
chr4_2 mRNA 41640099 41646614 41640099 ID=Msa0600430-mRNA-1;Parent=Msa0600430;Name=Msa0600430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=213|1|1|1|0.66|0.57|7|1021|265
chr4_2 exon 41640099 41640294 41640099 ID=Msa0600430-mRNA-1:exon:9087;Parent=Msa0600430-mRNA-1
chr4_2 exon 41641506 41641606 41641506 ID=Msa0600430-mRNA-1:exon:9088;Parent=Msa0600430-mRNA-1
chr4_2 exon 41642467 41642715 41642467 ID=Msa0600430-mRNA-1:exon:9089;Parent=Msa0600430-mRNA-1
chr4_2 exon 41643464 41643691 41643464 ID=Msa0600430-mRNA-1:exon:9090;Parent=Msa0600430-mRNA-1
chr4_2 exon 41643928 41644041 41643928 ID=Msa0600430-mRNA-1:exon:9091;Parent=Msa0600430-mRNA-1
chr4_2 exon 41645159 41645649 41645159 ID=Msa0600430-mRNA-1:exon:9092;Parent=Msa0600430-mRNA-1
chr4_2 exon 41645962 41646614 41645962 ID=Msa0600430-mRNA-1:exon:9093;Parent=Msa0600430-mRNA-1
chr4_2 five_prime_UTR 41640099 41640294 41640099 ID=Msa0600430-mRNA-1:five_prime_utr;Parent=Msa0600430-mRNA-1
chr4_2 five_prime_UTR 41641506 41641522 41641506 ID=Msa0600430-mRNA-1:five_prime_utr;Parent=Msa0600430-mRNA-1
chr4_2 CDS 41641523 41641606 41641523 ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2 CDS 41642467 41642715 41642467 ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2 CDS 41643464 41643691 41643464 ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2 CDS 41643928 41644041 41643928 ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2 CDS 41645159 41645281 41645159 ID=Msa0600430-mRNA-1:cds;Parent=Msa0600430-mRNA-1
chr4_2 three_prime_UTR 41645282 41645649 41645282 ID=Msa0600430-mRNA-1:three_prime_utr;Parent=Msa0600430-mRNA-1
chr4_2 three_prime_UTR 41645962 41646614 41645962 ID=Msa0600430-mRNA-1:three_prime_utr;Parent=Msa0600430-mRNA-1
Gene Sequence

>Msa0600430

ATGGGTGTCCCAGGCAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCGTGAATCCTTAGAGAAGGATGGAAATCAGGCTAGCAAGTTTTGCCATCGGAGAAAGAATTCCGTTGAAATTGACAACGGAAAACTTCAAAATGAGTTTGACAATGATGGTGCTGCACCTATTGGAGATGTAGATCATGCGAATCCCCAATCAAACCTTGAAGCCCATTATTCTCCTTCTACTTCACAACAAGTACAGGATCCTGCACATAATCATCAAATCACGAGCGAAGAATGGGCAGCAATATGCATTCAAACAGCGTTTCGTGGATTTCTGGCCAGGAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAAGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGAGTTCAGGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGTCATTGGAAAGTCAAACAGAACAACAGAAACTTCAGCAACAGCTTGTAAACGAAGCTCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATATTAAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGGCAGCAGGCCGTTTCTTCAGGATTTGAACCTGATAAAAGCAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGTCCTTGGGAGAAATCGTTTTCTTGA
Protein sequence

>Msa0600430

MGVPGKWIRALVGLKKSEKRESLEKDGNQASKFCHRRKNSVEIDNGKLQNEFDNDGAAPIGDVDHANPQSNLEAHYSPSTSQQVQDPAHNHQITSEEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLSLESQTEQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKSSWGWNWLERWMAVRPWEKSFS*