AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544830 MtrunA17_Chr4g0025441 97.926 434 8 1 1 434 1 433 0.0 870
Msa0544830 MtrunA17_Chr3g0135851 45.620 274 135 4 1 266 1 268 6.62e-56 191
Msa0544830 MtrunA17_Chr1g0200161 51.366 183 79 4 94 271 138 315 4.22e-51 179
Msa0544830 MtrunA17_Chr6g0462191 39.752 322 172 6 89 392 99 416 6.20e-49 172
Msa0544830 MtrunA17_Chr7g0263731 52.632 171 80 1 96 265 107 277 2.09e-45 164
Msa0544830 MtrunA17_Chr2g0316401 44.242 165 92 0 99 263 76 240 5.10e-45 159
Msa0544830 MtrunA17_Chr2g0283321 45.349 172 92 1 99 270 65 234 2.99e-44 156
Msa0544830 MtrunA17_Chr1g0181581 49.383 162 80 2 96 256 115 275 3.26e-44 160
Msa0544830 MtrunA17_Chr8g0346021 46.535 202 87 7 96 280 126 323 6.61e-42 155
Msa0544830 MtrunA17_Chr8g0342551 37.410 278 145 5 1 265 1 262 4.43e-37 140
Msa0544830 MtrunA17_Chr2g0330051 53.107 177 73 3 96 262 77 253 3.67e-33 129
Msa0544830 MtrunA17_Chr1g0146931 47.500 200 72 5 96 265 121 317 1.64e-32 128
Msa0544830 MtrunA17_Chr4g0045641 33.721 344 166 17 99 392 148 479 3.87e-32 128
Msa0544830 MtrunA17_Chr4g0020671 28.116 345 198 10 96 417 100 417 1.07e-27 114
Msa0544830 MtrunA17_Chr3g0126901 44.886 176 78 5 97 259 112 281 4.16e-25 107
Msa0544830 MtrunA17_Chr7g0273861 34.444 180 103 5 80 255 108 276 2.37e-24 104
Msa0544830 MtrunA17_Chr1g0204901 48.673 113 45 2 96 195 135 247 6.20e-24 103
Msa0544830 MtrunA17_Chr6g0472551 39.053 169 75 3 92 260 112 252 1.66e-22 99.4
Msa0544830 MtrunA17_Chr1g0203711 40.000 160 69 3 96 255 114 246 1.97e-22 99.0
Msa0544830 MtrunA17_Chr8g0340761 37.186 199 92 6 1 168 1 197 2.13e-22 98.6
Msa0544830 MtrunA17_Chr2g0330921 35.096 208 94 6 1 185 1 190 7.65e-22 96.3
Msa0544830 MtrunA17_Chr4g0060381 30.605 281 131 9 4 261 5 244 7.90e-22 98.2
Msa0544830 MtrunA17_Chr8g0389781 66.667 66 22 0 96 161 125 190 1.00e-20 94.0
Msa0544830 MtrunA17_Chr8g0371131 63.235 68 25 0 93 160 67 134 1.45e-19 84.7
Msa0544830 MtrunA17_Chr7g0273951 61.194 67 26 0 99 165 108 174 3.62e-19 89.0
Msa0544830 MtrunA17_Chr4g0057321 39.752 161 86 4 1 160 1 151 1.00e-18 87.8
Msa0544830 MtrunA17_Chr1g0156121 33.537 164 81 5 97 257 124 262 3.36e-17 84.3
Msa0544830 MtrunA17_Chr1g0166431 48.148 108 51 1 96 198 116 223 5.68e-17 82.8
Msa0544830 MtrunA17_Chr1g0172611 35.878 131 75 2 99 221 107 236 3.81e-14 73.6
Msa0544830 MtrunA17_Chr5g0416161 49.231 65 33 0 99 163 121 185 6.71e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544830 AT3G22190.3 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0544830 AT3G22190.2 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0544830 AT3G22190.4 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0544830 AT3G22190.1 52.791 430 173 8 1 422 1 408 1.08e-115 345
Msa0544830 AT2G26180.1 50.545 275 113 6 1 266 1 261 4.25e-68 223
Msa0544830 AT1G72670.1 39.583 288 160 5 1 280 1 282 2.17e-54 186
Msa0544830 AT5G03040.1 49.425 174 77 3 94 261 112 280 5.68e-49 173
Msa0544830 AT5G03040.3 49.425 174 77 3 94 261 112 280 5.68e-49 173
Msa0544830 AT5G03040.2 49.425 174 77 3 94 261 112 280 5.68e-49 173
Msa0544830 AT3G52290.1 48.634 183 86 4 96 276 107 283 4.16e-46 165
Msa0544830 AT3G09710.1 42.932 191 105 2 96 285 107 294 1.18e-42 156
Msa0544830 AT2G33990.1 41.176 170 99 1 95 264 45 213 3.24e-41 147
Msa0544830 AT3G15050.1 42.424 165 95 0 99 263 52 216 7.46e-41 146
Msa0544830 AT1G17480.1 37.066 259 136 6 1 252 1 239 2.34e-40 148
Msa0544830 AT3G09710.2 40.976 205 103 5 96 285 107 308 3.15e-40 150
Msa0544830 AT4G00820.1 40.889 225 107 6 55 263 96 310 4.26e-40 150
Msa0544830 AT3G49260.1 44.737 190 90 5 88 263 112 300 2.37e-39 147
Msa0544830 AT3G49260.4 44.737 190 90 5 88 263 112 300 2.37e-39 147
Msa0544830 AT3G49260.2 44.737 190 90 5 88 263 112 300 2.37e-39 147
Msa0544830 AT3G49260.3 42.714 199 82 5 88 263 112 301 4.19e-39 147
Msa0544830 AT2G26410.2 42.373 177 93 5 96 266 147 320 1.21e-35 138
Msa0544830 AT2G26410.1 42.373 177 93 5 96 266 147 320 1.21e-35 138
Msa0544830 AT1G01110.2 41.530 183 92 3 96 263 120 302 9.17e-34 133
Msa0544830 AT3G59690.2 44.586 157 74 6 100 253 172 318 1.21e-31 127
Msa0544830 AT3G59690.1 44.586 157 74 6 100 253 172 318 1.21e-31 127
Msa0544830 AT4G10640.1 33.441 311 145 8 98 383 101 374 1.28e-28 117
Msa0544830 AT2G43680.4 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0544830 AT2G43680.2 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0544830 AT2G43680.3 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0544830 AT2G43680.5 38.994 159 81 6 99 253 324 470 1.29e-25 110
Msa0544830 AT2G43680.1 38.994 159 81 6 99 253 325 471 1.29e-25 110
Msa0544830 AT5G13460.1 36.413 184 100 5 79 255 89 262 1.71e-25 108
Msa0544830 AT4G14750.1 68.657 67 21 0 96 162 104 170 5.34e-23 100
Msa0544830 AT4G14750.2 68.657 67 21 0 96 162 163 229 1.16e-22 100
Msa0544830 AT4G14750.3 68.657 67 21 0 96 162 163 229 1.21e-22 100
Msa0544830 AT4G23060.1 60.976 82 32 0 89 170 159 240 9.91e-22 97.8
Msa0544830 AT3G16490.1 66.154 65 22 0 96 160 106 170 1.54e-20 93.2
Msa0544830 AT5G07240.1 67.647 68 22 0 90 157 99 166 6.73e-20 91.7
Msa0544830 AT5G07240.2 67.647 68 22 0 90 157 145 212 9.81e-20 91.7
Msa0544830 AT1G19870.1 30.769 208 105 3 96 302 214 383 1.44e-19 92.0
Msa0544830 AT1G51960.1 61.644 73 27 1 93 164 95 167 1.60e-19 89.7
Msa0544830 AT1G19870.2 30.769 208 105 3 96 302 31 200 1.65e-19 91.7
Msa0544830 AT1G18840.1 47.778 90 43 1 78 163 86 175 1.81e-19 91.3
Msa0544830 AT1G18840.3 47.778 90 43 1 78 163 86 175 1.81e-19 91.3
Msa0544830 AT1G18840.2 47.778 90 43 1 78 163 86 175 1.81e-19 91.3
Msa0544830 AT1G74690.1 41.538 130 62 3 39 163 59 179 7.29e-19 89.4
Msa0544830 AT3G51380.1 64.615 65 23 0 94 158 34 98 7.86e-18 79.0
Msa0544830 AT1G14380.1 35.329 167 97 5 1 163 1 160 1.35e-17 85.9
Msa0544830 AT1G14380.3 35.329 167 97 5 1 163 1 160 1.35e-17 85.9
Msa0544830 AT1G14380.4 35.329 167 97 5 1 163 1 160 1.35e-17 85.9
Msa0544830 AT1G14380.6 35.329 167 97 5 1 163 1 160 1.47e-17 85.5
Msa0544830 AT1G14380.5 35.329 167 97 5 1 163 1 160 1.47e-17 85.5
Msa0544830 AT1G14380.2 35.329 167 97 5 1 163 1 160 1.47e-17 85.5
Msa0544830 AT1G14380.7 35.329 167 97 5 1 163 1 160 2.03e-17 85.1
Msa0544830 AT5G62070.1 67.742 62 20 0 90 151 110 171 4.15e-17 83.2
Msa0544830 AT3G49380.1 64.615 65 23 0 99 163 112 176 6.03e-17 82.4
Msa0544830 AT4G29150.1 63.077 65 24 0 96 160 130 194 2.78e-16 80.9
Msa0544830 AT5G35670.1 34.921 189 107 6 96 278 159 337 7.35e-16 79.7
Msa0544830 AT5G03960.3 38.889 126 74 2 99 221 110 235 7.88e-13 70.1
Msa0544830 AT5G03960.2 38.889 126 74 2 99 221 110 235 7.88e-13 70.1
Msa0544830 AT5G03960.1 38.889 126 74 2 99 221 109 234 8.06e-13 70.1
Msa0544830 AT2G02790.2 46.269 67 36 0 97 163 107 173 5.67e-11 65.1
Msa0544830 AT2G02790.3 46.269 67 36 0 97 163 107 173 5.67e-11 65.1
Msa0544830 AT2G02790.1 46.269 67 36 0 97 163 107 173 9.23e-11 64.3

Find 145 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTGTCTCTTTAATATTT+TGG 0.074947 4_1:+33795837 None:intergenic
TGAACATTTGCATTAGATTT+TGG 0.157733 4_1:+33794299 None:intergenic
GTTAGATCTGGTAGGATATT+TGG 0.217923 4_1:+33793821 None:intergenic
ACAACGCTTGGATGAATATT+TGG 0.234812 4_1:+33794422 None:intergenic
ACTTGTGAGTTTCTCTCCTT+TGG 0.258573 4_1:+33794221 None:intergenic
AGGCAGCAGGCCGTTTCTTC+AGG 0.270335 4_1:-33794632 Msa0544830:CDS
CACATTTCCATCCTTCTCTA+AGG 0.275439 4_1:+33798224 None:intergenic
AACAGCGTTTCGTGGATTTC+TGG 0.282468 4_1:-33797114 Msa0544830:intron
GTAGCACGCAAAAGCCTATA+AGG 0.290736 4_1:-33793785 Msa0544830:CDS
CACATCAGCGTCTTCATAGA+AGG 0.323047 4_1:+33793579 None:intergenic
AGCTTAGGTTTATCCCTTAT+AGG 0.329649 4_1:+33793771 None:intergenic
GTGAAGTAGAAGGAGAATAA+TGG 0.331113 4_1:+33797204 None:intergenic
GAGATTGGCTTGGGCTTTCA+TGG 0.335782 4_1:-33793545 Msa0544830:three_prime_UTR
CTTTCTTTCTATCTAATTTG+TGG 0.339426 4_1:+33799711 None:intergenic
AATGGGCTTCAAGGTTTGAT+TGG 0.343344 4_1:+33797222 None:intergenic
AAAGCAGTTGGGGTTGGAAT+TGG 0.353714 4_1:-33794595 Msa0544830:CDS
GAGAGTTCAGGCTCGTGTTC+GGG 0.366984 4_1:-33796231 Msa0544830:CDS
GCAAGCTTTGGTGAGAGTTC+AGG 0.371238 4_1:-33796243 Msa0544830:CDS
GTTGGAATTGGTTGGAAAGA+TGG 0.381054 4_1:-33794583 Msa0544830:CDS
ATGGGCTTCAAGGTTTGATT+GGG 0.381657 4_1:+33797223 None:intergenic
CCTGTGATTATTAGATGATT+CGG 0.383290 4_1:-33793247 Msa0544830:three_prime_UTR
GAAGAAACCAACTCAAAATC+TGG 0.385612 4_1:-33794266 Msa0544830:CDS
TGTGGTTTGATTGTTGAGAT+TGG 0.397987 4_1:-33793560 Msa0544830:three_prime_UTR
TTACTGCATGGCCTCTTACA+AGG 0.407942 4_1:+33796297 None:intergenic
AAGGAGAATAATGGGCTTCA+AGG 0.408085 4_1:+33797213 None:intergenic
CTAAGCTAAGCTGTAGAACT+TGG 0.408834 4_1:-33799616 Msa0544830:five_prime_UTR
TGAGAGTTCAGGCTCGTGTT+CGG 0.416787 4_1:-33796232 Msa0544830:CDS
TCCCCTCCTCCATTGAGCTT+AGG 0.419990 4_1:+33793756 None:intergenic
ATCAAATCACGAGCGAAGAA+TGG 0.421607 4_1:-33797154 Msa0544830:CDS
TTGATTGTTGAGATTGGCTT+GGG 0.422069 4_1:-33793554 Msa0544830:three_prime_UTR
GATGTTATGGATGGTAGAAA+TGG 0.422170 4_1:-33794488 Msa0544830:CDS
TGAACCTGATAAAAGCAGTT+GGG 0.424024 4_1:-33794606 Msa0544830:CDS
TGAAGTAGAAGGAGAATAAT+GGG 0.424231 4_1:+33797205 None:intergenic
AATGATGGTGCTGCACCTAT+TGG 0.424678 4_1:-33797266 Msa0544830:CDS
GGCATATGCTCTAGCTCATC+AGG 0.427400 4_1:-33795788 Msa0544830:intron
TTTGAGTTGGTTTCTTCAAC+GGG 0.429692 4_1:+33794272 None:intergenic
TGCATTCAAACAGCGTTTCG+TGG 0.439864 4_1:-33797122 Msa0544830:CDS
GATGGATGGCTGTACGTCCT+TGG 0.444202 4_1:-33794565 Msa0544830:CDS
CAAAGCTCGTAGTGCTCTCC+TGG 0.445869 4_1:+33796343 None:intergenic
ATGGATGGCTGTACGTCCTT+GGG 0.447160 4_1:-33794564 Msa0544830:CDS
TCTCCGTTGTATGCAAGCTT+TGG 0.449466 4_1:-33796255 Msa0544830:CDS
GGTAGACGAAAATGATGTTA+TGG 0.450653 4_1:-33794501 Msa0544830:CDS
AAGGCGTGTTCGCTTGTCAT+TGG 0.452023 4_1:-33796207 Msa0544830:CDS
TCCACTTTGCAGTGGCAGGC+AGG 0.454817 4_1:-33794659 Msa0544830:intron
AATGCTCTAATCCACTTGCC+TGG 0.459539 4_1:+33798279 None:intergenic
AGCCAAAATATTAAAGAGAC+AGG 0.460505 4_1:-33795839 Msa0544830:CDS
GCAGGCAGGATCAAGGCAGC+AGG 0.462311 4_1:-33794645 Msa0544830:CDS
CATTCTCCATTGAGGTCCTC+AGG 0.465743 4_1:-33793678 Msa0544830:three_prime_UTR
CAACGGAATTCTTTCTCCGA+TGG 0.469679 4_1:+33797324 None:intergenic
CTTGACATTAATACGAAGGA+TGG 0.470311 4_1:-33794530 Msa0544830:CDS
TACTGCATGGCCTCTTACAA+GGG 0.472086 4_1:+33796298 None:intergenic
CTGATAAAAGCAGTTGGGGT+TGG 0.473450 4_1:-33794601 Msa0544830:CDS
TTTGATTGTTGAGATTGGCT+TGG 0.473573 4_1:-33793555 Msa0544830:three_prime_UTR
CAAAATGAGTTTGACAATGA+TGG 0.481901 4_1:-33797281 Msa0544830:CDS
TCAAATCACGAGCGAAGAAT+GGG 0.482710 4_1:-33797153 Msa0544830:CDS
TGTACTTGTTGTGAAGTAGA+AGG 0.484072 4_1:+33797194 None:intergenic
TGTGTGACGCAAAGGGTTGA+GGG 0.488823 4_1:-33793629 Msa0544830:three_prime_UTR
GCATGATCTACATCTCCAAT+AGG 0.489763 4_1:+33797251 None:intergenic
TGTCCCTTTCACGTTAGATC+TGG 0.490098 4_1:+33793809 None:intergenic
TTCAGGCTCGTGTTCGGGCA+AGG 0.490486 4_1:-33796226 Msa0544830:CDS
GGAGATTCCTCGTACAGTAT+TGG 0.492352 4_1:-33793290 Msa0544830:three_prime_UTR
AAACTCACAAGTAGATAAAC+CGG 0.493615 4_1:-33794210 Msa0544830:CDS
ATGTGTGACGCAAAGGGTTG+AGG 0.493849 4_1:-33793630 Msa0544830:three_prime_UTR
AGCGTTGTCAGTCACAAAAC+CGG 0.494399 4_1:-33794407 Msa0544830:CDS
CTACCAGATCTAACGTGAAA+GGG 0.494835 4_1:-33793812 Msa0544830:CDS
CTTGTTTGGTACAGGAAGGT+TGG 0.497244 4_1:-33795894 Msa0544830:intron
AGGCAAGTGGATTAGAGCAT+TGG 0.498452 4_1:-33798277 Msa0544830:CDS
GAGAACAAACTCACCATGGT+TGG 0.502802 4_1:+33794166 None:intergenic
GAGCTTTGAAAGGATTGGTA+AGG 0.506231 4_1:-33796328 Msa0544830:CDS
AAGCTGTAGAACTTGGATGA+TGG 0.507177 4_1:-33799609 Msa0544830:five_prime_UTR
CAGTTGGGGTTGGAATTGGT+TGG 0.508731 4_1:-33794591 Msa0544830:CDS
TTCTACTTCACAACAAGTAC+AGG 0.509033 4_1:-33797192 Msa0544830:CDS
AGGCTTCAAGCCCTTGTAAG+AGG 0.511278 4_1:-33796308 Msa0544830:CDS
TCATGGTTATAAGATTTGTC+AGG 0.513664 4_1:-33793528 Msa0544830:three_prime_UTR
AGGTTCAAATCCTGAAGAAA+CGG 0.515201 4_1:+33794622 None:intergenic
AAACCTAAGCTCAATGGAGG+AGG 0.518311 4_1:-33793759 Msa0544830:CDS
CTGAGGACCTCAATGGAGAA+TGG 0.518724 4_1:+33793679 None:intergenic
CCGAATCATCTAATAATCAC+AGG 0.519415 4_1:+33793247 None:intergenic
AGGGATAAACCTAAGCTCAA+TGG 0.520197 4_1:-33793765 Msa0544830:CDS
ACTTGGCAATAGCAATAAAA+CGG 0.520321 4_1:+33793396 None:intergenic
AGAACAAACTCACCATGGTT+GGG 0.522573 4_1:+33794167 None:intergenic
TAGATTGCAATGGGTGTCCC+AGG 0.522581 4_1:-33798297 Msa0544830:exon
ACTACGAGCTTTGAAAGGAT+TGG 0.522803 4_1:-33796333 Msa0544830:CDS
GGTTTGTGCTAGATTGCAAT+GGG 0.527620 4_1:-33798306 Msa0544830:exon
TAAGAAAACACCTTTCAACT+TGG 0.529260 4_1:+33793379 None:intergenic
TAGCACGCAAAAGCCTATAA+GGG 0.529406 4_1:-33793784 Msa0544830:CDS
GCCATCAGAAAGTGAAGGGC+CGG 0.529950 4_1:+33794388 None:intergenic
AGCTGTAGAACTTGGATGAT+GGG 0.530148 4_1:-33799608 Msa0544830:five_prime_UTR
ATTGCTATTGCCAAGTTGAA+AGG 0.530733 4_1:-33793389 Msa0544830:three_prime_UTR
GTGTTAGTAGACTTGAACTG+AGG 0.533731 4_1:+33794458 None:intergenic
TGCAGTGGCAGGCAGGATCA+AGG 0.534616 4_1:-33794652 Msa0544830:intron
ACCGGCCCTTCACTTTCTGA+TGG 0.540369 4_1:-33794389 Msa0544830:CDS
CGTGAATCCTTAGAGAAGGA+TGG 0.540618 4_1:-33798231 Msa0544830:CDS
TTAATACTTAGTTACACAAG+TGG 0.541167 4_1:+33793711 None:intergenic
AGGTTTGTGCTAGATTGCAA+TGG 0.544057 4_1:-33798307 Msa0544830:exon
GAACCTGATAAAAGCAGTTG+GGG 0.546214 4_1:-33794605 Msa0544830:CDS
TCTTCCACTAGCAAGTCAGC+AGG 0.546756 4_1:-33794356 Msa0544830:CDS
TTGAACCTGATAAAAGCAGT+TGG 0.552298 4_1:-33794607 Msa0544830:CDS
AGCAATAAAACGGAAGGCAG+TGG 0.552720 4_1:+33793406 None:intergenic
ATATTTGGCTGTTTGAGCCC+CGG 0.556821 4_1:+33793836 None:intergenic
CCTACCAGATCTAACGTGAA+AGG 0.557151 4_1:-33793813 Msa0544830:CDS
TTTAGCAGGTGTTGGTTCCG+GGG 0.559787 4_1:-33793853 Msa0544830:intron
ATGCTCTAATCCACTTGCCT+GGG 0.560979 4_1:+33798280 None:intergenic
CTTCTATGAAGACGCTGATG+TGG 0.562709 4_1:-33793578 Msa0544830:three_prime_UTR
ATGTCACCTGAGGACCTCAA+TGG 0.564637 4_1:+33793672 None:intergenic
GTGATTTGATGATTATGTGC+AGG 0.572761 4_1:+33797167 None:intergenic
ACCTAAGCTCAATGGAGGAG+GGG 0.573382 4_1:-33793757 Msa0544830:CDS
TGGATGATGGGAACTCAACT+CGG 0.575598 4_1:-33799596 Msa0544830:five_prime_UTR
GACGAAAATGATGTTATGGA+TGG 0.577697 4_1:-33794497 Msa0544830:CDS
CAATGGGTGTCCCAGGCAAG+TGG 0.584203 4_1:-33798290 Msa0544830:CDS
ACATGCAATGTGTGACGCAA+AGG 0.587195 4_1:-33793637 Msa0544830:three_prime_UTR
AGAGCACTACGAGCTTTGAA+AGG 0.590621 4_1:-33796338 Msa0544830:CDS
GGCAATAGCAATAAAACGGA+AGG 0.595588 4_1:+33793400 None:intergenic
CAAACCTGCTGACTTGCTAG+TGG 0.597084 4_1:+33794352 None:intergenic
AAAGCGTGAATCCTTAGAGA+AGG 0.597984 4_1:-33798235 Msa0544830:CDS
AACCTAAGCTCAATGGAGGA+GGG 0.601091 4_1:-33793758 Msa0544830:CDS
AACTACTCCATTCTCCATTG+AGG 0.601785 4_1:-33793686 Msa0544830:three_prime_UTR
GAATTGGTTGGAAAGATGGA+TGG 0.603840 4_1:-33794579 Msa0544830:CDS
AAGATCTCAAAGTAATCCAA+AGG 0.605081 4_1:-33794237 Msa0544830:CDS
CATGCAATGTGTGACGCAAA+GGG 0.612688 4_1:-33793636 Msa0544830:three_prime_UTR
ACATCAGCGTCTTCATAGAA+GGG 0.614799 4_1:+33793580 None:intergenic
CACAGCCATCAGAAAGTGAA+GGG 0.617780 4_1:+33794384 None:intergenic
TCACAGCCATCAGAAAGTGA+AGG 0.617863 4_1:+33794383 None:intergenic
TAATACGAAGGATGGAGTGA+AGG 0.620363 4_1:-33794522 Msa0544830:CDS
AAGATGAGAATGACACATTG+TGG 0.631772 4_1:-33793311 Msa0544830:three_prime_UTR
AAGTGGATTAGAGCATTGGT+TGG 0.632093 4_1:-33798273 Msa0544830:CDS
CGATTATCTCTTCCCAACCA+TGG 0.632221 4_1:-33794179 Msa0544830:intron
CAAAATATTAAAGAGACAGG+AGG 0.633283 4_1:-33795836 Msa0544830:CDS
CCTTTCACGTTAGATCTGGT+AGG 0.633476 4_1:+33793813 None:intergenic
GTGTGACGCAAAGGGTTGAG+GGG 0.635369 4_1:-33793628 Msa0544830:three_prime_UTR
TGGGCTTCAAGGTTTGATTG+GGG 0.636004 4_1:+33797224 None:intergenic
AGCAAAACGTGAGAGAGCCA+TGG 0.642186 4_1:-33795809 Msa0544830:CDS
TCAAGAAAACGATTCTCCCA+AGG 0.647063 4_1:+33794548 None:intergenic
TCACCAAAGCTTGCATACAA+CGG 0.650453 4_1:+33796252 None:intergenic
GATAAACCTAAGCTCAATGG+AGG 0.654380 4_1:-33793762 Msa0544830:CDS
GAAAACAATATCTAGAAACA+AGG 0.654980 4_1:+33793353 None:intergenic
GGAAGGTTGGTGTGACAGTG+TGG 0.655505 4_1:-33795881 Msa0544830:CDS
TTACTTGCCAATACTGTACG+AGG 0.659018 4_1:+33793283 None:intergenic
AATTCCGTTGAAATTGACAA+CGG 0.663667 4_1:-33797311 Msa0544830:CDS
AGGGAGGAACATGTACATTG+TGG 0.667498 4_1:+33793599 None:intergenic
ATGAGCTAGAGCATATGCCA+TGG 0.669679 4_1:+33795792 None:intergenic
GAAGGTTGGTGTGACAGTGT+GGG 0.697609 4_1:-33795880 Msa0544830:CDS
TCAGCGTCTTCATAGAAGGG+AGG 0.707661 4_1:+33793583 None:intergenic
AAACAGACAAATGTCACCTG+AGG 0.710839 4_1:+33793662 None:intergenic
GTTGTGAGCTATGTATAATG+CGG 0.778329 4_1:-33793466 Msa0544830:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATATCTTATAATATTT+GGG + chr4_1:33795290-33795309 None:intergenic 10.0%
!! ATCAGATAAAAAAAAAAAAA+AGG + chr4_1:33795346-33795365 None:intergenic 10.0%
!! AAATATATGTTAATAAATAG+TGG + chr4_1:33796080-33796099 None:intergenic 10.0%
!! TAATAAAACAAAATAACTAT+GGG + chr4_1:33796843-33796862 None:intergenic 10.0%
!! TTAATAAAACAAAATAACTA+TGG + chr4_1:33796844-33796863 None:intergenic 10.0%
!!! GTTATTTTGTTTTATTAATA+TGG - chr4_1:33796846-33796865 Msa0544830:intron 10.0%
!!! ATTTTCTTTTCTATAAATTA+AGG - chr4_1:33797456-33797475 Msa0544830:intron 10.0%
!!! TTCTAAAAAGTAAGTAAAAA+GGG - chr4_1:33793406-33793425 Msa0544830:three_prime_UTR 15.0%
!!! TTTATTGAATTTAGAACTTT+AGG - chr4_1:33793619-33793638 Msa0544830:three_prime_UTR 15.0%
!! TTTAAACAAATGTAAGAAAT+GGG + chr4_1:33794335-33794354 None:intergenic 15.0%
!! GCAAAATATCTTATAATATT+TGG + chr4_1:33795291-33795310 None:intergenic 15.0%
!! GAAAGATTAATCAAATATAA+TGG + chr4_1:33797218-33797237 None:intergenic 15.0%
!!! TTTTTCCTTATTAATATGAT+AGG + chr4_1:33797772-33797791 None:intergenic 15.0%
!!! CTAGAATTTCATTAATTTTA+GGG + chr4_1:33797871-33797890 None:intergenic 15.0%
!!! ACTAGAATTTCATTAATTTT+AGG + chr4_1:33797872-33797891 None:intergenic 15.0%
!!! ATTGTTTTCTTTTAAGAAAT+TGG - chr4_1:33799602-33799621 Msa0544830:five_prime_UTR 15.0%
!!! CTTTTTACTTACTTTTTAGA+AGG + chr4_1:33793407-33793426 None:intergenic 20.0%
!!! CTTCTAAAAAGTAAGTAAAA+AGG - chr4_1:33793405-33793424 Msa0544830:three_prime_UTR 20.0%
!!! ACAAAAAGTTTGAAACTTTT+AGG + chr4_1:33793562-33793581 None:intergenic 20.0%
!!! AAAGTTAAATTTTTGAATGC+TGG + chr4_1:33793588-33793607 None:intergenic 20.0%
!!! TATCTGTTGATTTATAACTA+AGG - chr4_1:33793691-33793710 Msa0544830:three_prime_UTR 20.0%
!!! TGTAAGATCTATTGTTTTTT+AGG - chr4_1:33793756-33793775 Msa0544830:CDS 20.0%
!!! CATTTTTTTTCCATTTTTTG+TGG - chr4_1:33793856-33793875 Msa0544830:intron 20.0%
!! ACATAATTTAGTGTAATCAT+AGG - chr4_1:33793978-33793997 Msa0544830:intron 20.0%
!!! GTTTACATTTTTCTATTGAT+TGG - chr4_1:33794082-33794101 Msa0544830:intron 20.0%
!! TTAAACAAATGTAAGAAATG+GGG + chr4_1:33794334-33794353 None:intergenic 20.0%
!! CTTTAAACAAATGTAAGAAA+TGG + chr4_1:33794336-33794355 None:intergenic 20.0%
!!! AAGTCAATATTTGTTTTGAT+TGG + chr4_1:33794387-33794406 None:intergenic 20.0%
!! TCATTCAAATCTGTATATTA+AGG - chr4_1:33795005-33795024 Msa0544830:intron 20.0%
!! ATAGTTTAACAATATGAAAG+TGG + chr4_1:33795429-33795448 None:intergenic 20.0%
!!! TTATTTATCACAACATTTTG+AGG - chr4_1:33795873-33795892 Msa0544830:CDS 20.0%
!! TTATCTCTTTATACTTGAAT+AGG - chr4_1:33795944-33795963 Msa0544830:intron 20.0%
!!! TATTACTTTTGCTTAGAATT+TGG - chr4_1:33796006-33796025 Msa0544830:intron 20.0%
!!! ATTACTTTTGCTTAGAATTT+GGG - chr4_1:33796007-33796026 Msa0544830:intron 20.0%
!!! CAGAATAAGTTTTTAAGTTA+GGG + chr4_1:33796507-33796526 None:intergenic 20.0%
!!! TCAGAATAAGTTTTTAAGTT+AGG + chr4_1:33796508-33796527 None:intergenic 20.0%
!! TAAAATTGCAAATTTCAAAG+AGG - chr4_1:33797369-33797388 Msa0544830:intron 20.0%
!! TTACATAGTAGTAAATGATT+AGG + chr4_1:33797612-33797631 None:intergenic 20.0%
!! TAATCATTTACTACTATGTA+AGG - chr4_1:33797611-33797630 Msa0544830:intron 20.0%
!! AATCATTTACTACTATGTAA+GGG - chr4_1:33797612-33797631 Msa0544830:intron 20.0%
!! AAGATCCTATCATATTAATA+AGG - chr4_1:33797764-33797783 Msa0544830:intron 20.0%
!! TTCATGAAATTAATAATCCT+TGG - chr4_1:33797894-33797913 Msa0544830:intron 20.0%
!! AATAAAACATTGCAAAATTG+GGG + chr4_1:33798051-33798070 None:intergenic 20.0%
!! GAATAAAACATTGCAAAATT+GGG + chr4_1:33798052-33798071 None:intergenic 20.0%
!! AGAATAAAACATTGCAAAAT+TGG + chr4_1:33798053-33798072 None:intergenic 20.0%
!! TTTGCAATTATAAGTATGAA+GGG - chr4_1:33798099-33798118 Msa0544830:intron 20.0%
!! TTATTCCCTTATATTATCTA+TGG - chr4_1:33798198-33798217 Msa0544830:intron 20.0%
!! ATAAACTGTCTAATCAAAAT+TGG + chr4_1:33798920-33798939 None:intergenic 20.0%
!! AATCTAACACATTATTCAAA+AGG + chr4_1:33799031-33799050 None:intergenic 20.0%
!! TGAATAATGTGTTAGATTAA+TGG - chr4_1:33799033-33799052 Msa0544830:intron 20.0%
! CTTTCTTTCTATCTAATTTG+TGG + chr4_1:33793233-33793252 None:intergenic 25.0%
!!! CACACAAACACTATTTTTAT+GGG + chr4_1:33793266-33793285 None:intergenic 25.0%
!!! ACACACAAACACTATTTTTA+TGG + chr4_1:33793267-33793286 None:intergenic 25.0%
!!! GAAACTTTTAGGAAGAAAAT+GGG + chr4_1:33793551-33793570 None:intergenic 25.0%
!!! TGAAACTTTTAGGAAGAAAA+TGG + chr4_1:33793552-33793571 None:intergenic 25.0%
! TCTTACAACAATTGAGATAA+TGG + chr4_1:33793743-33793762 None:intergenic 25.0%
!!! TTTTTTTCCATTTTTTGTGG+AGG - chr4_1:33793859-33793878 Msa0544830:intron 25.0%
! AACATGCTTAACTAAAAGAA+AGG + chr4_1:33794483-33794502 None:intergenic 25.0%
! ATGAAGAAGCAAATATCAAA+AGG + chr4_1:33794517-33794536 None:intergenic 25.0%
!!! TTCAATTCGGTTCATTTTTT+TGG - chr4_1:33794552-33794571 Msa0544830:CDS 25.0%
! ACAAGTCATGAATAGTATAA+AGG + chr4_1:33794791-33794810 None:intergenic 25.0%
!! AGTTATTGCATTTGTACTTT+TGG - chr4_1:33794814-33794833 Msa0544830:intron 25.0%
!!! GTATGAGTTAATTTTTTTGG+CGG + chr4_1:33794885-33794904 None:intergenic 25.0%
! GCCAAAAAAATTAACTCATA+CGG - chr4_1:33794884-33794903 Msa0544830:intron 25.0%
!!! TCCGTATGAGTTAATTTTTT+TGG + chr4_1:33794888-33794907 None:intergenic 25.0%
! TTTATATTCCTGAAATCCAA+AGG - chr4_1:33794947-33794966 Msa0544830:intron 25.0%
!! TGATATTTTCAATAATCAGC+AGG - chr4_1:33795581-33795600 Msa0544830:intron 25.0%
! TCAAGTATAAAGAGATAAAG+AGG + chr4_1:33795942-33795961 None:intergenic 25.0%
! TCTGATACCAACTTAAATTT+GGG - chr4_1:33796217-33796236 Msa0544830:CDS 25.0%
!! AAACATATTTTTCCCATTGA+TGG + chr4_1:33796352-33796371 None:intergenic 25.0%
!! ATGTTTTACCCTTAAAAATC+AGG - chr4_1:33796366-33796385 Msa0544830:intron 25.0%
! TAAAATGCTTATATCTACCA+AGG - chr4_1:33796405-33796424 Msa0544830:intron 25.0%
! CATTTCAAGATAAACAAATC+AGG + chr4_1:33796439-33796458 None:intergenic 25.0%
! TAAACATTTAGTTGCTAACA+AGG - chr4_1:33796534-33796553 Msa0544830:intron 25.0%
! AAATTTACGATTCCATCTAA+TGG - chr4_1:33797177-33797196 Msa0544830:CDS 25.0%
! TCCATCTAATGGAAATTAAA+AGG - chr4_1:33797188-33797207 Msa0544830:CDS 25.0%
! CCATCTAATGGAAATTAAAA+GGG - chr4_1:33797189-33797208 Msa0544830:CDS 25.0%
!! AATTGCTATTCTAGTATATG+TGG - chr4_1:33797254-33797273 Msa0544830:CDS 25.0%
! AAGTAATTACTTACATCTCA+CGG + chr4_1:33797323-33797342 None:intergenic 25.0%
!! GTTGGTTACATAATGTTTTA+GGG - chr4_1:33797417-33797436 Msa0544830:intron 25.0%
!!! TTACATAATGTTTTAGGGAA+AGG - chr4_1:33797422-33797441 Msa0544830:intron 25.0%
!! GCTATAAAATGTTTCTAAAC+AGG - chr4_1:33797481-33797500 Msa0544830:intron 25.0%
! GTTTATTGAGTCATAGAATA+TGG - chr4_1:33797553-33797572 Msa0544830:intron 25.0%
! ATCATTTACTACTATGTAAG+GGG - chr4_1:33797613-33797632 Msa0544830:intron 25.0%
! CTTTGCAATTATAAGTATGA+AGG - chr4_1:33798098-33798117 Msa0544830:intron 25.0%
! TGTGTCCATAGATAATATAA+GGG + chr4_1:33798206-33798225 None:intergenic 25.0%
! TTGTGTCCATAGATAATATA+AGG + chr4_1:33798207-33798226 None:intergenic 25.0%
! TAACTGAAAATATGAACCAA+AGG + chr4_1:33798240-33798259 None:intergenic 25.0%
!! TTTTCTTGACATTAATACGA+AGG - chr4_1:33798407-33798426 Msa0544830:intron 25.0%
!! TGAACATTTGCATTAGATTT+TGG + chr4_1:33798645-33798664 None:intergenic 25.0%
! GGTGATAATCTAATACAATA+AGG + chr4_1:33798815-33798834 None:intergenic 25.0%
!! TGTTTTATGTTAAGCAAACA+TGG + chr4_1:33798858-33798877 None:intergenic 25.0%
! ATTTGCGAATTTAGTATGAT+CGG + chr4_1:33798954-33798973 None:intergenic 25.0%
! ACACATTATTCAAAAGGATT+TGG + chr4_1:33799025-33799044 None:intergenic 25.0%
! CAAGACAAAAAACTTAGAAA+TGG + chr4_1:33799065-33799084 None:intergenic 25.0%
!!! TTTTTGTCTTGTATTTTAGC+AGG - chr4_1:33799074-33799093 Msa0544830:intron 25.0%
! TTAATACTTAGTTACACAAG+TGG + chr4_1:33799233-33799252 None:intergenic 25.0%
! GAAAACAATATCTAGAAACA+AGG + chr4_1:33799591-33799610 None:intergenic 25.0%
!! TGCATCAATTTTAGTGTTTC+AGG - chr4_1:33793477-33793496 Msa0544830:three_prime_UTR 30.0%
!! TATGACCAATTGTTTCTGTA+TGG - chr4_1:33793802-33793821 Msa0544830:CDS 30.0%
! TATTGATTGGCAAATGTTAG+TGG - chr4_1:33794095-33794114 Msa0544830:intron 30.0%
!! ATGTTAGTGGTTAGTTTGTT+AGG - chr4_1:33794108-33794127 Msa0544830:intron 30.0%
TTCTACACTGTATACGATTT+CGG - chr4_1:33794268-33794287 Msa0544830:CDS 30.0%
TTAATCAAACACACTTCCTT+TGG + chr4_1:33794966-33794985 None:intergenic 30.0%
! CAGTTAAAGACCTGAAATTT+TGG - chr4_1:33795064-33795083 Msa0544830:intron 30.0%
ATACAAAAGACCAAGCATTA+AGG - chr4_1:33795203-33795222 Msa0544830:intron 30.0%
ATAAATCAGTCCTTAATGCT+TGG + chr4_1:33795216-33795235 None:intergenic 30.0%
CTGGCTATTCTATAATTTCA+TGG - chr4_1:33795515-33795534 Msa0544830:intron 30.0%
AATTCCGTTGAAATTGACAA+CGG - chr4_1:33795630-33795649 Msa0544830:intron 30.0%
! TTTTCCGTTGTCAATTTCAA+CGG + chr4_1:33795637-33795656 None:intergenic 30.0%
CAAAATGAGTTTGACAATGA+TGG - chr4_1:33795660-33795679 Msa0544830:intron 30.0%
TGAAGTAGAAGGAGAATAAT+GGG + chr4_1:33795739-33795758 None:intergenic 30.0%
! TTTTGCTTAGAATTTGGGTA+GGG - chr4_1:33796012-33796031 Msa0544830:intron 30.0%
CTTACAAACCAGTTTCATAA+GGG + chr4_1:33796046-33796065 None:intergenic 30.0%
TCTTACAAACCAGTTTCATA+AGG + chr4_1:33796047-33796066 None:intergenic 30.0%
!! TTAAGAGTACCACATTAGAT+GGG + chr4_1:33796114-33796133 None:intergenic 30.0%
CTCTGATACCAACTTAAATT+TGG - chr4_1:33796216-33796235 Msa0544830:CDS 30.0%
!! CATACAAGTCAGTTTTGTAA+GGG + chr4_1:33796258-33796277 None:intergenic 30.0%
! CTGTAATGCCTGATTTTTAA+GGG + chr4_1:33796377-33796396 None:intergenic 30.0%
! ACTGTAATGCCTGATTTTTA+AGG + chr4_1:33796378-33796397 None:intergenic 30.0%
TTAAAAATCAGGCATTACAG+TGG - chr4_1:33796377-33796396 Msa0544830:intron 30.0%
CAAATCAGGAAAATAAACCT+TGG + chr4_1:33796425-33796444 None:intergenic 30.0%
CAACAAATCTAACCAAATGT+GGG - chr4_1:33796557-33796576 Msa0544830:intron 30.0%
AGCCAAAATATTAAAGAGAC+AGG - chr4_1:33797102-33797121 Msa0544830:intron 30.0%
! CTCCTGTCTCTTTAATATTT+TGG + chr4_1:33797107-33797126 None:intergenic 30.0%
CAAAATATTAAAGAGACAGG+AGG - chr4_1:33797105-33797124 Msa0544830:intron 30.0%
!!! CCCTTTTAATTTCCATTAGA+TGG + chr4_1:33797192-33797211 None:intergenic 30.0%
AATTGCAAATTTCAAAGAGG+AGG - chr4_1:33797372-33797391 Msa0544830:intron 30.0%
!! GGTTGGTTACATAATGTTTT+AGG - chr4_1:33797416-33797435 Msa0544830:intron 30.0%
!!! ATAATGTTTTAGGGAAAGGT+TGG - chr4_1:33797426-33797445 Msa0544830:intron 30.0%
!!! TAATGTTTTAGGGAAAGGTT+GGG - chr4_1:33797427-33797446 Msa0544830:intron 30.0%
AATTTGAAAATGAACTGCAG+AGG - chr4_1:33797685-33797704 Msa0544830:intron 30.0%
GATGATATTTGTGAAGCATA+TGG - chr4_1:33797792-33797811 Msa0544830:intron 30.0%
AATTTCAAAATGATCCCTCA+GGG + chr4_1:33797965-33797984 None:intergenic 30.0%
AAATTTCAAAATGATCCCTC+AGG + chr4_1:33797966-33797985 None:intergenic 30.0%
! TCTATGGAATTACAAGCTTT+TGG + chr4_1:33798012-33798031 None:intergenic 30.0%
TGTAATTCCATAGACGAAAT+TGG - chr4_1:33798018-33798037 Msa0544830:intron 30.0%
!!! GCATTAGATTTTGGTTTAAC+AGG + chr4_1:33798636-33798655 None:intergenic 30.0%
!!! TTTTGAGTTGGTTTCTTCAA+CGG + chr4_1:33798673-33798692 None:intergenic 30.0%
AAGATCTCAAAGTAATCCAA+AGG - chr4_1:33798704-33798723 Msa0544830:intron 30.0%
AAACTCACAAGTAGATAAAC+CGG - chr4_1:33798731-33798750 Msa0544830:intron 30.0%
TCATGGTTATAAGATTTGTC+AGG - chr4_1:33799413-33799432 Msa0544830:intron 30.0%
ACTTGGCAATAGCAATAAAA+CGG + chr4_1:33799548-33799567 None:intergenic 30.0%
TAAGAAAACACCTTTCAACT+TGG + chr4_1:33799565-33799584 None:intergenic 30.0%
CCTGTGATTATTAGATGATT+CGG - chr4_1:33799694-33799713 Msa0544830:five_prime_UTR 30.0%
TATAGATCCAGAGATGAGAA+AGG + chr4_1:33793517-33793536 None:intergenic 35.0%
GCATACCATACAGAAACAAT+TGG + chr4_1:33793810-33793829 None:intergenic 35.0%
TACTAGACAGTTATGAAGCA+CGG + chr4_1:33794059-33794078 None:intergenic 35.0%
!! TTAGTGGTTAGTTTGTTAGG+CGG - chr4_1:33794111-33794130 Msa0544830:intron 35.0%
TATACGATTTCGGTGGTTTA+AGG - chr4_1:33794278-33794297 Msa0544830:CDS 35.0%
ATCTTCATAGTACTAGAGCA+TGG + chr4_1:33794361-33794380 None:intergenic 35.0%
AGCTTAGTCATAGTACTAAG+AGG + chr4_1:33794427-33794446 None:intergenic 35.0%
!! CGAATTGAACTTTGAGGTAT+GGG + chr4_1:33794541-33794560 None:intergenic 35.0%
CCATACCTCAAAGTTCAATT+CGG - chr4_1:33794539-33794558 Msa0544830:CDS 35.0%
ATGAACCGAATTGAACTTTG+AGG + chr4_1:33794547-33794566 None:intergenic 35.0%
!!! GTTAATTTTTTTGGCGGCAT+GGG + chr4_1:33794879-33794898 None:intergenic 35.0%
!!! AGTTAATTTTTTTGGCGGCA+TGG + chr4_1:33794880-33794899 None:intergenic 35.0%
TATAAACCAAGCAAGGTGAA+CGG + chr4_1:33794933-33794952 None:intergenic 35.0%
TCAGGAATATAAACCAAGCA+AGG + chr4_1:33794940-33794959 None:intergenic 35.0%
TAGTGAGAACTTAACAACGT+TGG + chr4_1:33795091-33795110 None:intergenic 35.0%
GTTGTTAAGTTCTCACTACA+AGG - chr4_1:33795093-33795112 Msa0544830:intron 35.0%
TCAACTCTATGTTCTGCTAT+CGG - chr4_1:33795162-33795181 Msa0544830:intron 35.0%
GTGAAGTAGAAGGAGAATAA+TGG + chr4_1:33795740-33795759 None:intergenic 35.0%
!! TGTACTTGTTGTGAAGTAGA+AGG + chr4_1:33795750-33795769 None:intergenic 35.0%
TTCTACTTCACAACAAGTAC+AGG - chr4_1:33795749-33795768 Msa0544830:intron 35.0%
! GTGATTTGATGATTATGTGC+AGG + chr4_1:33795777-33795796 None:intergenic 35.0%
! CTTTTGCTTAGAATTTGGGT+AGG - chr4_1:33796011-33796030 Msa0544830:intron 35.0%
TTTGCTTAGAATTTGGGTAG+GGG - chr4_1:33796013-33796032 Msa0544830:intron 35.0%
GTTAACTACCCTTATGAAAC+TGG - chr4_1:33796035-33796054 Msa0544830:intron 35.0%
!! ACTGGTTTGTAAGATGATGA+CGG - chr4_1:33796053-33796072 Msa0544830:intron 35.0%
!! GTTAAGAGTACCACATTAGA+TGG + chr4_1:33796115-33796134 None:intergenic 35.0%
GTTGCAACCCAAATTTAAGT+TGG + chr4_1:33796227-33796246 None:intergenic 35.0%
!! ACTTAAATTTGGGTTGCAAC+TGG - chr4_1:33796227-33796246 Msa0544830:CDS 35.0%
!! CCATACAAGTCAGTTTTGTA+AGG + chr4_1:33796259-33796278 None:intergenic 35.0%
!! CCTTACAAAACTGACTTGTA+TGG - chr4_1:33796256-33796275 Msa0544830:CDS 35.0%
! CAAATGGGTTTATAAGTGGT+GGG + chr4_1:33796291-33796310 None:intergenic 35.0%
ACCACTTATAAACCCATTTG+CGG - chr4_1:33796291-33796310 Msa0544830:CDS 35.0%
TCCTTAACACTTCCATCAAT+GGG - chr4_1:33796337-33796356 Msa0544830:CDS 35.0%
GCAACAAATCTAACCAAATG+TGG - chr4_1:33796556-33796575 Msa0544830:intron 35.0%
TCACAAAATAGACCCACATT+TGG + chr4_1:33796572-33796591 None:intergenic 35.0%
! GTGGGTCTATTTTGTGAATT+AGG - chr4_1:33796575-33796594 Msa0544830:intron 35.0%
! TCTATTTTGTGAATTAGGCC+AGG - chr4_1:33796580-33796599 Msa0544830:intron 35.0%
ACATGACACAAGTGATCAAA+AGG + chr4_1:33796960-33796979 None:intergenic 35.0%
GTGTATTTCTCGTACTTGTT+TGG - chr4_1:33797033-33797052 Msa0544830:intron 35.0%
TATCATTAGTCCTTCTCATC+AGG - chr4_1:33797277-33797296 Msa0544830:CDS 35.0%
TAATTACTTACATCTCACGG+TGG + chr4_1:33797320-33797339 None:intergenic 35.0%
AGGAGGTGGTTGATTAATTT+AGG - chr4_1:33797389-33797408 Msa0544830:intron 35.0%
GGAGGTGGTTGATTAATTTA+GGG - chr4_1:33797390-33797409 Msa0544830:intron 35.0%
TGGTTGATTAATTTAGGGAC+TGG - chr4_1:33797395-33797414 Msa0544830:intron 35.0%
! TGATTAATTTAGGGACTGGT+TGG - chr4_1:33797399-33797418 Msa0544830:intron 35.0%
!!! AATGTTTTAGGGAAAGGTTG+GGG - chr4_1:33797428-33797447 Msa0544830:intron 35.0%
TAAACAGAAGCTTCCAATGA+TGG + chr4_1:33797538-33797557 None:intergenic 35.0%
AATTAGAGCTCAATAGCAAC+TGG + chr4_1:33797582-33797601 None:intergenic 35.0%
ATTGACAAGAATTTGCATGC+AGG + chr4_1:33797664-33797683 None:intergenic 35.0%
TCAAAAATCACTGCAAGTGA+AGG + chr4_1:33797714-33797733 None:intergenic 35.0%
!!! GTCCCTAATATTTTAGCAGT+CGG - chr4_1:33797838-33797857 Msa0544830:intron 35.0%
!!! TCCCTAATATTTTAGCAGTC+GGG - chr4_1:33797839-33797858 Msa0544830:intron 35.0%
ACCCGACTGCTAAAATATTA+GGG + chr4_1:33797843-33797862 None:intergenic 35.0%
TACCCGACTGCTAAAATATT+AGG + chr4_1:33797844-33797863 None:intergenic 35.0%
!!! AATATTTTAGCAGTCGGGTA+TGG - chr4_1:33797844-33797863 Msa0544830:intron 35.0%
CAAAGGGAATTATATGACCA+AGG + chr4_1:33797914-33797933 None:intergenic 35.0%
TAAGGGAATAACAACTGACA+GGG + chr4_1:33798189-33798208 None:intergenic 35.0%
ATAAGGGAATAACAACTGAC+AGG + chr4_1:33798190-33798209 None:intergenic 35.0%
ACACAACACATTGTTTCCTT+TGG - chr4_1:33798221-33798240 Msa0544830:intron 35.0%
AGGTTCAAATCCTGAAGAAA+CGG + chr4_1:33798322-33798341 None:intergenic 35.0%
TTGAACCTGATAAAAGCAGT+TGG - chr4_1:33798334-33798353 Msa0544830:intron 35.0%
TGAACCTGATAAAAGCAGTT+GGG - chr4_1:33798335-33798354 Msa0544830:intron 35.0%
CTTGACATTAATACGAAGGA+TGG - chr4_1:33798411-33798430 Msa0544830:intron 35.0%
GGTAGACGAAAATGATGTTA+TGG - chr4_1:33798440-33798459 Msa0544830:intron 35.0%
GACGAAAATGATGTTATGGA+TGG - chr4_1:33798444-33798463 Msa0544830:intron 35.0%
GATGTTATGGATGGTAGAAA+TGG - chr4_1:33798453-33798472 Msa0544830:intron 35.0%
ACAACGCTTGGATGAATATT+TGG + chr4_1:33798522-33798541 None:intergenic 35.0%
!! TTTGAGTTGGTTTCTTCAAC+GGG + chr4_1:33798672-33798691 None:intergenic 35.0%
GAAGAAACCAACTCAAAATC+TGG - chr4_1:33798675-33798694 Msa0544830:intron 35.0%
!! TTGAACTCCAGATTTTGAGT+TGG + chr4_1:33798685-33798704 None:intergenic 35.0%
AATTGGAGAGTGATTCTTTG+CGG + chr4_1:33798903-33798922 None:intergenic 35.0%
ACAGTTTCCTTGTAAGTTAG+CGG - chr4_1:33798980-33798999 Msa0544830:intron 35.0%
!!! TCTTGTATTTTAGCAGGTGT+TGG - chr4_1:33799080-33799099 Msa0544830:intron 35.0%
GTTAGATCTGGTAGGATATT+TGG + chr4_1:33799123-33799142 None:intergenic 35.0%
AGCTTAGGTTTATCCCTTAT+AGG + chr4_1:33799173-33799192 None:intergenic 35.0%
TGTGGTTTGATTGTTGAGAT+TGG - chr4_1:33799381-33799400 Msa0544830:intron 35.0%
! TTTGATTGTTGAGATTGGCT+TGG - chr4_1:33799386-33799405 Msa0544830:intron 35.0%
!! TTGATTGTTGAGATTGGCTT+GGG - chr4_1:33799387-33799406 Msa0544830:intron 35.0%
GTTGTGAGCTATGTATAATG+CGG - chr4_1:33799475-33799494 Msa0544830:intron 35.0%
! ATTGCTATTGCCAAGTTGAA+AGG - chr4_1:33799552-33799571 Msa0544830:five_prime_UTR 35.0%
AAGATGAGAATGACACATTG+TGG - chr4_1:33799630-33799649 Msa0544830:five_prime_UTR 35.0%
CCGAATCATCTAATAATCAC+AGG + chr4_1:33799697-33799716 None:intergenic 35.0%
CTAAGCTAAGCTGTAGAACT+TGG - chr4_1:33793325-33793344 Msa0544830:three_prime_UTR 40.0%
AAGCTGTAGAACTTGGATGA+TGG - chr4_1:33793332-33793351 Msa0544830:three_prime_UTR 40.0%
AGCTGTAGAACTTGGATGAT+GGG - chr4_1:33793333-33793352 Msa0544830:three_prime_UTR 40.0%
AGCTTTACCTTTCTCATCTC+TGG - chr4_1:33793507-33793526 Msa0544830:three_prime_UTR 40.0%
!! CTTTTAGGAAGAAAATGGGC+AGG + chr4_1:33793547-33793566 None:intergenic 40.0%
GAAACTGCCTCCACAAAAAA+TGG + chr4_1:33793869-33793888 None:intergenic 40.0%
!! TAGTGGTTAGTTTGTTAGGC+GGG - chr4_1:33794112-33794131 Msa0544830:intron 40.0%
TACACTGTATACGATTTCGG+TGG - chr4_1:33794271-33794290 Msa0544830:CDS 40.0%
TTTCGGTGGTTTAAGGATTG+AGG - chr4_1:33794285-33794304 Msa0544830:CDS 40.0%
!! CCGAATTGAACTTTGAGGTA+TGG + chr4_1:33794542-33794561 None:intergenic 40.0%
TGCATTATGATCGACTGCTT+TGG - chr4_1:33794588-33794607 Msa0544830:CDS 40.0%
ATTGCAATCTAGCACAAACC+TGG + chr4_1:33794635-33794654 None:intergenic 40.0%
AGGTTTGTGCTAGATTGCAA+TGG - chr4_1:33794634-33794653 Msa0544830:CDS 40.0%
GGTTTGTGCTAGATTGCAAT+GGG - chr4_1:33794635-33794654 Msa0544830:CDS 40.0%
!! AAGTGGATTAGAGCATTGGT+TGG - chr4_1:33794668-33794687 Msa0544830:intron 40.0%
AAAGCGTGAATCCTTAGAGA+AGG - chr4_1:33794706-33794725 Msa0544830:intron 40.0%
CACATTTCCATCCTTCTCTA+AGG + chr4_1:33794720-33794739 None:intergenic 40.0%
ACACACTTCCTTTGGATTTC+AGG + chr4_1:33794958-33794977 None:intergenic 40.0%
CAACGTTGGACCAAAATTTC+AGG + chr4_1:33795077-33795096 None:intergenic 40.0%
GCTGTTATCAACCTTCAGAA+TGG - chr4_1:33795115-33795134 Msa0544830:intron 40.0%
ACCTTCAGAATGGTAAACAC+TGG - chr4_1:33795125-33795144 Msa0544830:intron 40.0%
! AATGGTAAACACTGGCTATC+TGG - chr4_1:33795133-33795152 Msa0544830:intron 40.0%
!!! GTGAATGACGAGAGTGTTTT+TGG - chr4_1:33795367-33795386 Msa0544830:intron 40.0%
CTGCTTGACAAACTTCTTTC+TGG - chr4_1:33795496-33795515 Msa0544830:intron 40.0%
GCATGATCTACATCTCCAAT+AGG + chr4_1:33795693-33795712 None:intergenic 40.0%
ATGGGCTTCAAGGTTTGATT+GGG + chr4_1:33795721-33795740 None:intergenic 40.0%
! AATGGGCTTCAAGGTTTGAT+TGG + chr4_1:33795722-33795741 None:intergenic 40.0%
!! AAGGAGAATAATGGGCTTCA+AGG + chr4_1:33795731-33795750 None:intergenic 40.0%
ATCAAATCACGAGCGAAGAA+TGG - chr4_1:33795787-33795806 Msa0544830:intron 40.0%
TCAAATCACGAGCGAAGAAT+GGG - chr4_1:33795788-33795807 Msa0544830:intron 40.0%
GTACCACATTAGATGGGATA+AGG + chr4_1:33796108-33796127 None:intergenic 40.0%
! TGCTCTAGATGTTAAGTCCT+AGG + chr4_1:33796145-33796164 None:intergenic 40.0%
TACTATCTATCGGACCATTC+GGG + chr4_1:33796171-33796190 None:intergenic 40.0%
CTACTATCTATCGGACCATT+CGG + chr4_1:33796172-33796191 None:intergenic 40.0%
! GCAAATGGGTTTATAAGTGG+TGG + chr4_1:33796292-33796311 None:intergenic 40.0%
CCACTTATAAACCCATTTGC+GGG - chr4_1:33796292-33796311 Msa0544830:CDS 40.0%
CTCCTTAACACTTCCATCAA+TGG - chr4_1:33796336-33796355 Msa0544830:CDS 40.0%
!! TCCCATTGATGGAAGTGTTA+AGG + chr4_1:33796341-33796360 None:intergenic 40.0%
!! ACTACGAGCTTTGAAAGGAT+TGG - chr4_1:33796608-33796627 Msa0544830:intron 40.0%
!! GAGCTTTGAAAGGATTGGTA+AGG - chr4_1:33796613-33796632 Msa0544830:intron 40.0%
!! CAGCTTGTTTTCTTACTGCA+TGG + chr4_1:33796659-33796678 None:intergenic 40.0%
TCACCAAAGCTTGCATACAA+CGG + chr4_1:33796692-33796711 None:intergenic 40.0%
TTCTCGTACTTGTTTGGTAC+AGG - chr4_1:33797039-33797058 Msa0544830:intron 40.0%
TGCAAATTTCAAAGAGGAGG+TGG - chr4_1:33797375-33797394 Msa0544830:intron 40.0%
!!! ATGTTTTAGGGAAAGGTTGG+GGG - chr4_1:33797429-33797448 Msa0544830:intron 40.0%
GTTCTACGATCATCCATCAT+TGG - chr4_1:33797522-33797541 Msa0544830:intron 40.0%
GAACCTGATAAAAGCAGTTG+GGG - chr4_1:33798336-33798355 Msa0544830:intron 40.0%
GTTGGAATTGGTTGGAAAGA+TGG - chr4_1:33798358-33798377 Msa0544830:intron 40.0%
GAATTGGTTGGAAAGATGGA+TGG - chr4_1:33798362-33798381 Msa0544830:intron 40.0%
TCAAGAAAACGATTCTCCCA+AGG + chr4_1:33798396-33798415 None:intergenic 40.0%
TAATACGAAGGATGGAGTGA+AGG - chr4_1:33798419-33798438 Msa0544830:intron 40.0%
GTGTTAGTAGACTTGAACTG+AGG + chr4_1:33798486-33798505 None:intergenic 40.0%
ACTTGTGAGTTTCTCTCCTT+TGG + chr4_1:33798723-33798742 None:intergenic 40.0%
!!! AGAGATAATCGCTTTTTCGC+CGG + chr4_1:33798753-33798772 None:intergenic 40.0%
AGAACAAACTCACCATGGTT+GGG + chr4_1:33798777-33798796 None:intergenic 40.0%
GAAAGAGAACAAACTCACCA+TGG + chr4_1:33798782-33798801 None:intergenic 40.0%
ATTGGAGAGTGATTCTTTGC+GGG + chr4_1:33798902-33798921 None:intergenic 40.0%
CAGTTTCCTTGTAAGTTAGC+GGG - chr4_1:33798981-33799000 Msa0544830:intron 40.0%
TCTTATCCCGCTAACTTACA+AGG + chr4_1:33798990-33799009 None:intergenic 40.0%
!!! ATTTTAGCAGGTGTTGGTTC+CGG - chr4_1:33799086-33799105 Msa0544830:intron 40.0%
CTACCAGATCTAACGTGAAA+GGG - chr4_1:33799129-33799148 Msa0544830:intron 40.0%
TAGCACGCAAAAGCCTATAA+GGG - chr4_1:33799157-33799176 Msa0544830:intron 40.0%
AGGGATAAACCTAAGCTCAA+TGG - chr4_1:33799176-33799195 Msa0544830:intron 40.0%
GATAAACCTAAGCTCAATGG+AGG - chr4_1:33799179-33799198 Msa0544830:intron 40.0%
AACTACTCCATTCTCCATTG+AGG - chr4_1:33799255-33799274 Msa0544830:intron 40.0%
AAACAGACAAATGTCACCTG+AGG + chr4_1:33799282-33799301 None:intergenic 40.0%
ACATCAGCGTCTTCATAGAA+GGG + chr4_1:33799364-33799383 None:intergenic 40.0%
GGCAATAGCAATAAAACGGA+AGG + chr4_1:33799544-33799563 None:intergenic 40.0%
TTACTTGCCAATACTGTACG+AGG + chr4_1:33799661-33799680 None:intergenic 40.0%
!! TGGATGATGGGAACTCAACT+CGG - chr4_1:33793345-33793364 Msa0544830:three_prime_UTR 45.0%
AAGGTGTATGTTGGAGGTCA+GGG + chr4_1:33794165-33794184 None:intergenic 45.0%
! AAAGGTGTATGTTGGAGGTC+AGG + chr4_1:33794166-33794185 None:intergenic 45.0%
ACCTCCAACATACACCTTTG+CGG - chr4_1:33794167-33794186 Msa0544830:intron 45.0%
!! GACTGCTTTGGCATTGACTT+GGG - chr4_1:33794600-33794619 Msa0544830:CDS 45.0%
! TGACTTGGGAGAAAATTGCC+AGG - chr4_1:33794614-33794633 Msa0544830:CDS 45.0%
ATGCTCTAATCCACTTGCCT+GGG + chr4_1:33794664-33794683 None:intergenic 45.0%
AATGCTCTAATCCACTTGCC+TGG + chr4_1:33794665-33794684 None:intergenic 45.0%
!! AGGCAAGTGGATTAGAGCAT+TGG - chr4_1:33794664-33794683 Msa0544830:intron 45.0%
CGTGAATCCTTAGAGAAGGA+TGG - chr4_1:33794710-33794729 Msa0544830:intron 45.0%
GACAGAGAGAGATTGAGAGA+GGG + chr4_1:33794750-33794769 None:intergenic 45.0%
AGACAGAGAGAGATTGAGAG+AGG + chr4_1:33794751-33794770 None:intergenic 45.0%
!!! AATTTTTTTGGCGGCATGGG+AGG + chr4_1:33794876-33794895 None:intergenic 45.0%
TTTCTACCGTTCACCTTGCT+TGG - chr4_1:33794924-33794943 Msa0544830:intron 45.0%
GCCAGTGTTTACCATTCTGA+AGG + chr4_1:33795129-33795148 None:intergenic 45.0%
! AGGCTAGCAAGTTTTGCCAT+CGG - chr4_1:33795601-33795620 Msa0544830:intron 45.0%
CAACGGAATTCTTTCTCCGA+TGG + chr4_1:33795620-33795639 None:intergenic 45.0%
!! AATGATGGTGCTGCACCTAT+TGG - chr4_1:33795675-33795694 Msa0544830:intron 45.0%
TGGGCTTCAAGGTTTGATTG+GGG + chr4_1:33795720-33795739 None:intergenic 45.0%
TGCATTCAAACAGCGTTTCG+TGG - chr4_1:33795819-33795838 Msa0544830:CDS 45.0%
AACAGCGTTTCGTGGATTTC+TGG - chr4_1:33795827-33795846 Msa0544830:CDS 45.0%
! AGGCCTTATCCCATCTAATG+TGG - chr4_1:33796102-33796121 Msa0544830:intron 45.0%
TACTCTTAACACACACGCCT+AGG - chr4_1:33796125-33796144 Msa0544830:intron 45.0%
CGAATGGTCCGATAGATAGT+AGG - chr4_1:33796170-33796189 Msa0544830:CDS 45.0%
ATGGTCCGATAGATAGTAGG+TGG - chr4_1:33796173-33796192 Msa0544830:CDS 45.0%
TTGGGCCACCTACTATCTAT+CGG + chr4_1:33796181-33796200 None:intergenic 45.0%
TAGGTGGCCCAACAAATCAT+GGG - chr4_1:33796189-33796208 Msa0544830:CDS 45.0%
!! GAGCCTACCCATGATTTGTT+GGG + chr4_1:33796199-33796218 None:intergenic 45.0%
! AGAGCCTACCCATGATTTGT+TGG + chr4_1:33796200-33796219 None:intergenic 45.0%
! CCCGCAAATGGGTTTATAAG+TGG + chr4_1:33796295-33796314 None:intergenic 45.0%
ATGAGATAAGGCCCGCAAAT+GGG + chr4_1:33796306-33796325 None:intergenic 45.0%
AGTCCACCTTGGATGAGATA+AGG + chr4_1:33796318-33796337 None:intergenic 45.0%
AAGTGTTAAGGAGTCCACCT+TGG + chr4_1:33796329-33796348 None:intergenic 45.0%
!! AGAGCACTACGAGCTTTGAA+AGG - chr4_1:33796603-33796622 Msa0544830:intron 45.0%
TACTGCATGGCCTCTTACAA+GGG + chr4_1:33796646-33796665 None:intergenic 45.0%
TTACTGCATGGCCTCTTACA+AGG + chr4_1:33796647-33796666 None:intergenic 45.0%
TCTCCGTTGTATGCAAGCTT+TGG - chr4_1:33796686-33796705 Msa0544830:intron 45.0%
CGTACTTGTTTGGTACAGGA+AGG - chr4_1:33797043-33797062 Msa0544830:intron 45.0%
CTTGTTTGGTACAGGAAGGT+TGG - chr4_1:33797047-33797066 Msa0544830:intron 45.0%
ATGAGCTAGAGCATATGCCA+TGG + chr4_1:33797152-33797171 None:intergenic 45.0%
CAATCAAGGACCTGATGAGA+AGG + chr4_1:33797290-33797309 None:intergenic 45.0%
ACGGTGGAGCATAACAATCA+AGG + chr4_1:33797304-33797323 None:intergenic 45.0%
!!! TGTTTTAGGGAAAGGTTGGG+GGG - chr4_1:33797430-33797449 Msa0544830:intron 45.0%
ACTATGTAAGGGGAAAACCG+TGG - chr4_1:33797623-33797642 Msa0544830:intron 45.0%
CTATGTAAGGGGAAAACCGT+GGG - chr4_1:33797624-33797643 Msa0544830:intron 45.0%
TATGTAAGGGGAAAACCGTG+GGG - chr4_1:33797625-33797644 Msa0544830:intron 45.0%
GTCGATGAGATTGACGCAAA+GGG + chr4_1:33797930-33797949 None:intergenic 45.0%
AGTCGATGAGATTGACGCAA+AGG + chr4_1:33797931-33797950 None:intergenic 45.0%
!! ACTAAGTTGATCGACCCTGA+GGG - chr4_1:33797948-33797967 Msa0544830:intron 45.0%
TCGATCGCCAATTTCGTCTA+TGG + chr4_1:33798028-33798047 None:intergenic 45.0%
! TCCTCTTTTCCACTTTGCAG+TGG - chr4_1:33798274-33798293 Msa0544830:CDS 45.0%
!! CAACCCCAACTGCTTTTATC+AGG + chr4_1:33798342-33798361 None:intergenic 45.0%
CTGATAAAAGCAGTTGGGGT+TGG - chr4_1:33798340-33798359 Msa0544830:intron 45.0%
AAAGCAGTTGGGGTTGGAAT+TGG - chr4_1:33798346-33798365 Msa0544830:intron 45.0%
! GTTTTGTGACTGACAACGCT+TGG + chr4_1:33798534-33798553 None:intergenic 45.0%
AGCGTTGTCAGTCACAAAAC+CGG - chr4_1:33798534-33798553 Msa0544830:intron 45.0%
CACAGCCATCAGAAAGTGAA+GGG + chr4_1:33798560-33798579 None:intergenic 45.0%
TCACAGCCATCAGAAAGTGA+AGG + chr4_1:33798561-33798580 None:intergenic 45.0%
CGATTATCTCTTCCCAACCA+TGG - chr4_1:33798762-33798781 Msa0544830:intron 45.0%
GAGAACAAACTCACCATGGT+TGG + chr4_1:33798778-33798797 None:intergenic 45.0%
!!! TTTTAGCAGGTGTTGGTTCC+GGG - chr4_1:33799087-33799106 Msa0544830:intron 45.0%
ATATTTGGCTGTTTGAGCCC+CGG + chr4_1:33799108-33799127 None:intergenic 45.0%
CCTTTCACGTTAGATCTGGT+AGG + chr4_1:33799131-33799150 None:intergenic 45.0%
CCTACCAGATCTAACGTGAA+AGG - chr4_1:33799128-33799147 Msa0544830:intron 45.0%
TGTCCCTTTCACGTTAGATC+TGG + chr4_1:33799135-33799154 None:intergenic 45.0%
GTAGCACGCAAAAGCCTATA+AGG - chr4_1:33799156-33799175 Msa0544830:intron 45.0%
AAACCTAAGCTCAATGGAGG+AGG - chr4_1:33799182-33799201 Msa0544830:intron 45.0%
AACCTAAGCTCAATGGAGGA+GGG - chr4_1:33799183-33799202 Msa0544830:intron 45.0%
ACATGCAATGTGTGACGCAA+AGG - chr4_1:33799304-33799323 Msa0544830:intron 45.0%
CATGCAATGTGTGACGCAAA+GGG - chr4_1:33799305-33799324 Msa0544830:intron 45.0%
AGGGAGGAACATGTACATTG+TGG + chr4_1:33799345-33799364 None:intergenic 45.0%
CACATCAGCGTCTTCATAGA+AGG + chr4_1:33799365-33799384 None:intergenic 45.0%
CTTCTATGAAGACGCTGATG+TGG - chr4_1:33799363-33799382 Msa0544830:intron 45.0%
AGCAATAAAACGGAAGGCAG+TGG + chr4_1:33799538-33799557 None:intergenic 45.0%
GGAGATTCCTCGTACAGTAT+TGG - chr4_1:33799651-33799670 Msa0544830:five_prime_UTR 45.0%
!!! ATTTATTAACATATATTTTT+AGG - chr4_1:33796082-33796101 Msa0544830:intron 5.0%
! CATAGGTGCCATGTCAGTGT+CGG - chr4_1:33793995-33794014 Msa0544830:intron 50.0%
GATTAGGTGTGTCCTGGTGT+CGG + chr4_1:33794026-33794045 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG + chr4_1:33794048-33794067 None:intergenic 50.0%
!! TGGTTAGTTTGTTAGGCGGG+AGG - chr4_1:33794115-33794134 Msa0544830:intron 50.0%
CCTCCAACATACACCTTTGC+GGG - chr4_1:33794168-33794187 Msa0544830:intron 50.0%
CTCCAACATACACCTTTGCG+GGG - chr4_1:33794169-33794188 Msa0544830:intron 50.0%
!! CGACTGCTTTGGCATTGACT+TGG - chr4_1:33794599-33794618 Msa0544830:CDS 50.0%
TAGATTGCAATGGGTGTCCC+AGG - chr4_1:33794644-33794663 Msa0544830:CDS 50.0%
! CATCTAGAGCATGACCCGAA+TGG - chr4_1:33796154-33796173 Msa0544830:CDS 50.0%
GTAGGTGGCCCAACAAATCA+TGG - chr4_1:33796188-33796207 Msa0544830:CDS 50.0%
TGGCCCAACAAATCATGGGT+AGG - chr4_1:33796193-33796212 Msa0544830:CDS 50.0%
GATGAGATAAGGCCCGCAAA+TGG + chr4_1:33796307-33796326 None:intergenic 50.0%
AGGCTTCAAGCCCTTGTAAG+AGG - chr4_1:33796633-33796652 Msa0544830:intron 50.0%
! GCAAGCTTTGGTGAGAGTTC+AGG - chr4_1:33796698-33796717 Msa0544830:intron 50.0%
TGAGAGTTCAGGCTCGTGTT+CGG - chr4_1:33796709-33796728 Msa0544830:intron 50.0%
AAGGCGTGTTCGCTTGTCAT+TGG - chr4_1:33796734-33796753 Msa0544830:intron 50.0%
!! GAAGGTTGGTGTGACAGTGT+GGG - chr4_1:33797061-33797080 Msa0544830:intron 50.0%
AGCAAAACGTGAGAGAGCCA+TGG - chr4_1:33797132-33797151 Msa0544830:CDS 50.0%
! GGCATATGCTCTAGCTCATC+AGG - chr4_1:33797153-33797172 Msa0544830:CDS 50.0%
ATGTAAGGGGAAAACCGTGG+GGG - chr4_1:33797626-33797645 Msa0544830:intron 50.0%
AAACCGTGGGGGAACTGTAT+TGG - chr4_1:33797637-33797656 Msa0544830:intron 50.0%
!! GACTAAGTTGATCGACCCTG+AGG - chr4_1:33797947-33797966 Msa0544830:intron 50.0%
GCCACTGCAAAGTGGAAAAG+AGG + chr4_1:33798278-33798297 None:intergenic 50.0%
! CTTTTCCACTTTGCAGTGGC+AGG - chr4_1:33798278-33798297 Msa0544830:CDS 50.0%
CAGTTGGGGTTGGAATTGGT+TGG - chr4_1:33798350-33798369 Msa0544830:intron 50.0%
ATGGATGGCTGTACGTCCTT+GGG - chr4_1:33798377-33798396 Msa0544830:intron 50.0%
TCTTCCACTAGCAAGTCAGC+AGG - chr4_1:33798585-33798604 Msa0544830:intron 50.0%
!! CAAACCTGCTGACTTGCTAG+TGG + chr4_1:33798592-33798611 None:intergenic 50.0%
GATGATGTTAGCACTCGCAG+AGG + chr4_1:33798836-33798855 None:intergenic 50.0%
!! TTTAGCAGGTGTTGGTTCCG+GGG - chr4_1:33799088-33799107 Msa0544830:intron 50.0%
ACCTAAGCTCAATGGAGGAG+GGG - chr4_1:33799184-33799203 Msa0544830:intron 50.0%
CTGAGGACCTCAATGGAGAA+TGG + chr4_1:33799265-33799284 None:intergenic 50.0%
CATTCTCCATTGAGGTCCTC+AGG - chr4_1:33799263-33799282 Msa0544830:intron 50.0%
ATGTCACCTGAGGACCTCAA+TGG + chr4_1:33799272-33799291 None:intergenic 50.0%
ATGTGTGACGCAAAGGGTTG+AGG - chr4_1:33799311-33799330 Msa0544830:intron 50.0%
TGTGTGACGCAAAGGGTTGA+GGG - chr4_1:33799312-33799331 Msa0544830:intron 50.0%
TCAGCGTCTTCATAGAAGGG+AGG + chr4_1:33799361-33799380 None:intergenic 50.0%
!! GAGATTGGCTTGGGCTTTCA+TGG - chr4_1:33799396-33799415 Msa0544830:intron 50.0%
CGGACAAACCGACACTGACA+TGG + chr4_1:33794006-33794025 None:intergenic 55.0%
ACCAGGACACACCTAATCCG+AGG - chr4_1:33794028-33794047 Msa0544830:intron 55.0%
! TCCTCGGATTAGGTGTGTCC+TGG + chr4_1:33794032-33794051 None:intergenic 55.0%
! CCCGCAAAGGTGTATGTTGG+AGG + chr4_1:33794171-33794190 None:intergenic 55.0%
! GTCCCCGCAAAGGTGTATGT+TGG + chr4_1:33794174-33794193 None:intergenic 55.0%
! TGCGGGCCTTATCTCATCCA+AGG - chr4_1:33796309-33796328 Msa0544830:CDS 55.0%
! GGGCCTTATCTCATCCAAGG+TGG - chr4_1:33796312-33796331 Msa0544830:CDS 55.0%
CAAAGCTCGTAGTGCTCTCC+TGG + chr4_1:33796601-33796620 None:intergenic 55.0%
GAGAGTTCAGGCTCGTGTTC+GGG - chr4_1:33796710-33796729 Msa0544830:intron 55.0%
!! GGAAGGTTGGTGTGACAGTG+TGG - chr4_1:33797060-33797079 Msa0544830:intron 55.0%
GGACCAATACAGTTCCCCCA+CGG + chr4_1:33797643-33797662 None:intergenic 55.0%
GATGGATGGCTGTACGTCCT+TGG - chr4_1:33798376-33798395 Msa0544830:intron 55.0%
ACCGGCCCTTCACTTTCTGA+TGG - chr4_1:33798552-33798571 Msa0544830:intron 55.0%
GCCATCAGAAAGTGAAGGGC+CGG + chr4_1:33798556-33798575 None:intergenic 55.0%
TCCCCTCCTCCATTGAGCTT+AGG + chr4_1:33799188-33799207 None:intergenic 55.0%
GTGTGACGCAAAGGGTTGAG+GGG - chr4_1:33799313-33799332 Msa0544830:intron 55.0%
!! GTGTCGGTTTGTCCGACACC+AGG - chr4_1:33794011-33794030 Msa0544830:intron 60.0%
GCACGGACACTCCTCGGATT+AGG + chr4_1:33794042-33794061 None:intergenic 60.0%
TACACCTTTGCGGGGACTCG+TGG - chr4_1:33794177-33794196 Msa0544830:intron 60.0%
ACACCTTTGCGGGGACTCGT+GGG - chr4_1:33794178-33794197 Msa0544830:intron 60.0%
CAATGGGTGTCCCAGGCAAG+TGG - chr4_1:33794651-33794670 Msa0544830:intron 60.0%
TTCAGGCTCGTGTTCGGGCA+AGG - chr4_1:33796715-33796734 Msa0544830:intron 60.0%
TCCACTTTGCAGTGGCAGGC+AGG - chr4_1:33798282-33798301 Msa0544830:CDS 60.0%
TCCTGCCTGCCACTGCAAAG+TGG + chr4_1:33798286-33798305 None:intergenic 60.0%
TGCAGTGGCAGGCAGGATCA+AGG - chr4_1:33798289-33798308 Msa0544830:CDS 60.0%
AGGCAGCAGGCCGTTTCTTC+AGG - chr4_1:33798309-33798328 Msa0544830:intron 60.0%
CACCTTTGCGGGGACTCGTG+GGG - chr4_1:33794179-33794198 Msa0544830:intron 65.0%
ATCCCCACGAGTCCCCGCAA+AGG + chr4_1:33794184-33794203 None:intergenic 65.0%
TTTGCGGGGACTCGTGGGGA+TGG - chr4_1:33794183-33794202 Msa0544830:CDS 65.0%
GCAGGCAGGATCAAGGCAGC+AGG - chr4_1:33798296-33798315 Msa0544830:exon 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 33793214 33799749 33793214 ID=Msa0544830;Name=Msa0544830
chr4_1 mRNA 33793214 33799749 33793214 ID=Msa0544830-mRNA-1;Parent=Msa0544830;Name=Msa0544830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=218|1|1|1|0.66|0.71|7|508|436
chr4_1 exon 33793214 33793867 33793214 ID=Msa0544830-mRNA-1:exon:8681;Parent=Msa0544830-mRNA-1
chr4_1 exon 33794180 33794669 33794180 ID=Msa0544830-mRNA-1:exon:8680;Parent=Msa0544830-mRNA-1
chr4_1 exon 33795789 33795902 33795789 ID=Msa0544830-mRNA-1:exon:8679;Parent=Msa0544830-mRNA-1
chr4_1 exon 33796139 33796366 33796139 ID=Msa0544830-mRNA-1:exon:8678;Parent=Msa0544830-mRNA-1
chr4_1 exon 33797115 33797363 33797115 ID=Msa0544830-mRNA-1:exon:8677;Parent=Msa0544830-mRNA-1
chr4_1 exon 33798227 33798327 33798227 ID=Msa0544830-mRNA-1:exon:8676;Parent=Msa0544830-mRNA-1
chr4_1 exon 33799549 33799749 33799549 ID=Msa0544830-mRNA-1:exon:8675;Parent=Msa0544830-mRNA-1
chr4_1 five_prime_UTR 33799549 33799749 33799549 ID=Msa0544830-mRNA-1:five_prime_utr;Parent=Msa0544830-mRNA-1
chr4_1 five_prime_UTR 33798311 33798327 33798311 ID=Msa0544830-mRNA-1:five_prime_utr;Parent=Msa0544830-mRNA-1
chr4_1 CDS 33798227 33798310 33798227 ID=Msa0544830-mRNA-1:cds;Parent=Msa0544830-mRNA-1
chr4_1 CDS 33797115 33797363 33797115 ID=Msa0544830-mRNA-1:cds;Parent=Msa0544830-mRNA-1
chr4_1 CDS 33796139 33796366 33796139 ID=Msa0544830-mRNA-1:cds;Parent=Msa0544830-mRNA-1
chr4_1 CDS 33795789 33795902 33795789 ID=Msa0544830-mRNA-1:cds;Parent=Msa0544830-mRNA-1
chr4_1 CDS 33794180 33794669 33794180 ID=Msa0544830-mRNA-1:cds;Parent=Msa0544830-mRNA-1
chr4_1 CDS 33793722 33793867 33793722 ID=Msa0544830-mRNA-1:cds;Parent=Msa0544830-mRNA-1
chr4_1 three_prime_UTR 33793214 33793721 33793214 ID=Msa0544830-mRNA-1:three_prime_utr;Parent=Msa0544830-mRNA-1
Gene Sequence

>Msa0544830

ATGGGTGTCCCAGGCAAGTGGATTAGAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCGTGAATCCTTAGAGAAGGATGGAAATCAGGCTAGCAAGTTTTGCCATCGGAGAAAGAATTCCGTTGAAATTGACAACGGAAAACTTCAAAATGAGTTTGACAATGATGGTGCTGCACCTATTGGAGATGTAGATCATGCGAATCCCCAATCAAACCTTGAAGCCCATTATTCTCCTTCTACTTCACAACAAGTACAGGATCCTGCACATAATCATCAAATCACGAGCGAAGAATGGGCAGCAATATGCATTCAAACAGCGTTTCGTGGATTTCTGGCCAGGAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTTCAAGCCCTTGTAAGAGGCCATGCAGTAAGAAAACAAGCTGCAATAACTCTCCGTTGTATGCAAGCTTTGGTGAGAGTTCAGGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGTCATTGGAAAGTCAAACAGAACAACAGAAACTTCAGCAACAGCTTGTAAACGAAGCTCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATATTAAAGAGACAGGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGGCAGCAGGCCGTTTCTTCAGGATTTGAACCTGATAAAAGCAGTTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTACGTCCTTGGGAGAATCGTTTTCTTGACATTAATACGAAGGATGGAGTGAAGGTAGACGAAAATGATGTTATGGATGGTAGAAATGGAATCAGACCTCAGTTCAAGTCTACTAACACAAAATCGAATCTGCCAAATATTCATCCAAGCGTTGTCAGTCACAAAACCGGCCCTTCACTTTCTGATGGCTGTGATTCTTCTTCCACTAGCAAGTCAGCAGGTTTGCTAGAGACATCGAATACACAACCTGTTAAACCAAAATCTAATGCAAATGTTCAAAATCCCGTTGAAGAAACCAACTCAAAATCTGGAGTTCAAAGATCTCAAAGTAATCCAAAGGAGAGAAACTCACAAGTAGATAAACCGGCGAAAAAGCGATTATCTCTTCCCAACCATGGTGTTGGTTCCGGGGCTCAAACAGCCAAATATCCTACCAGATCTAACGTGAAAGGGACACGTAGCACGCAAAAGCCTATAAGGGATAAACCTAAGCTCAATGGAGGAGGGGATGTGAATCTTACAAAATCAGTTCCACTTGTGTAA
Protein sequence

>Msa0544830

MGVPGKWIRALVGLKKSEKRESLEKDGNQASKFCHRRKNSVEIDNGKLQNEFDNDGAAPIGDVDHANPQSNLEAHYSPSTSQQVQDPAHNHQITSEEWAAICIQTAFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLSLESQTEQQKLQQQLVNEARVREIEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALAHQWQAGSRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINTKDGVKVDENDVMDGRNGIRPQFKSTNTKSNLPNIHPSVVSHKTGPSLSDGCDSSSTSKSAGLLETSNTQPVKPKSNANVQNPVEETNSKSGVQRSQSNPKERNSQVDKPAKKRLSLPNHGVGSGAQTAKYPTRSNVKGTRSTQKPIRDKPKLNGGGDVNLTKSVPLV*