Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648090 | XP_013456642.1 | 93.082 | 159 | 10 | 1 | 2 | 159 | 1 | 159 | 5.81e-100 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648090 | sp|A0A3G5BB24|NBS_NARPS | 47.436 | 156 | 82 | 0 | 2 | 157 | 1 | 156 | 6.36e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0608170 | Msa0648090 | 0.985776 | 1.248184e-164 | -8.615850e-47 |
| Msa0648090 | Msa0691020 | 0.906739 | 1.074878e-80 | -8.615850e-47 |
| Msa0648090 | Msa0837990 | 0.800123 | 1.670552e-48 | -8.615850e-47 |
| Msa0648090 | Msa0846640 | 0.800177 | 1.628414e-48 | -8.615850e-47 |
| Msa0648090 | Msa0946120 | 0.820808 | 5.639733e-53 | -8.615850e-47 |
| Msa0648090 | Msa1009020 | 0.805703 | 1.174722e-49 | -8.615850e-47 |
| Msa0648090 | Msa1113200 | 0.804684 | 1.919284e-49 | -8.615850e-47 |
| Msa0648090 | Msa1128160 | 0.804233 | 2.383258e-49 | -8.615850e-47 |
| Msa0648090 | Msa1198270 | 0.817821 | 2.702630e-52 | -8.615850e-47 |
| Msa0648090 | Msa1319440 | 0.812431 | 4.255114e-51 | -8.615850e-47 |
| Msa0403340 | Msa0648090 | 0.830975 | 2.169159e-55 | -8.615850e-47 |
| Msa0304740 | Msa0648090 | 0.828571 | 8.350915e-55 | -8.615850e-47 |
| Msa0331590 | Msa0648090 | 0.820584 | 6.350542e-53 | -8.615850e-47 |
| Msa0357090 | Msa0648090 | 0.826258 | 2.993430e-54 | -8.615850e-47 |
| Msa0357100 | Msa0648090 | 0.880077 | 7.385023e-70 | -8.615850e-47 |
| Msa0569290 | Msa0648090 | 0.821138 | 4.734426e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648090 | MtrunA17_Chr4g0039941 | 93.082 | 159 | 10 | 1 | 2 | 159 | 1 | 159 | 5.35e-104 | 294 |
| Msa0648090 | MtrunA17_Chr4g0039921 | 77.848 | 158 | 35 | 0 | 2 | 159 | 1 | 158 | 9.76e-88 | 253 |
| Msa0648090 | MtrunA17_Chr3g0100201 | 30.952 | 126 | 80 | 2 | 2 | 124 | 1 | 122 | 1.36e-15 | 69.7 |
| Msa0648090 | MtrunA17_Chr3g0100191 | 33.333 | 102 | 66 | 2 | 28 | 128 | 26 | 126 | 3.98e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTACCCGTAATATATTT+TGG | 0.099272 | 4_3:-54508263 | None:intergenic |
| GAAGGTGGATACTTAGAATT+TGG | 0.200939 | 4_3:+54511010 | Msa0648090:CDS |
| ATAGGTTATAAAATGATTAT+TGG | 0.208282 | 4_3:+54511362 | Msa0648090:three_prime_UTR |
| TGAGCCATTGGCTAACATTA+TGG | 0.279776 | 4_3:+54511156 | Msa0648090:CDS |
| GTTTCTGTTGAGGTAATTCT+TGG | 0.289058 | 4_3:-54511185 | None:intergenic |
| CTCTTTGGCACCATTGGTAT+TGG | 0.293635 | 4_3:+54508408 | Msa0648090:CDS |
| TAGGTTATAAAATGATTATT+GGG | 0.324243 | 4_3:+54511363 | Msa0648090:three_prime_UTR |
| AGATCCCATGCTTCATTTGC+TGG | 0.334877 | 4_3:-54508387 | None:intergenic |
| AATTTCTCTTTGTAACCAGC+TGG | 0.370226 | 4_3:-54510941 | None:intergenic |
| AATAATCCCAAAATATATTA+CGG | 0.384290 | 4_3:+54508256 | Msa0648090:five_prime_UTR |
| ATTTGTTTCCATTGAGCCAT+TGG | 0.398190 | 4_3:+54511144 | Msa0648090:CDS |
| TGCAATCTTGAGAAACATAT+AGG | 0.420731 | 4_3:+54511344 | Msa0648090:three_prime_UTR |
| TCTTTGTAACCAGCTGGGCC+AGG | 0.438011 | 4_3:-54510935 | None:intergenic |
| TGGGATCTCTTTGGCACCAT+TGG | 0.444724 | 4_3:+54508402 | Msa0648090:CDS |
| AATGAAGCATGGGATCTCTT+TGG | 0.446830 | 4_3:+54508393 | Msa0648090:CDS |
| ATAATCCCAAAATATATTAC+GGG | 0.455945 | 4_3:+54508257 | Msa0648090:five_prime_UTR |
| TTGTAGCCTTGTTTCTGTTG+AGG | 0.460261 | 4_3:-54511195 | None:intergenic |
| ATGCTTCATTTGCTGGCACA+TGG | 0.468256 | 4_3:-54508380 | None:intergenic |
| GTGGAGCTAGTTGAAGGAGA+TGG | 0.469970 | 4_3:+54508471 | Msa0648090:CDS |
| CAGAAGGTGGAGCTAGTTGA+AGG | 0.471435 | 4_3:+54508465 | Msa0648090:CDS |
| GTTGAAGGAGATGGAGGAGT+TGG | 0.496688 | 4_3:+54508480 | Msa0648090:CDS |
| AATGTTAGCCAATGGCTCAA+TGG | 0.500199 | 4_3:-54511152 | None:intergenic |
| GAGCTAGTTGAAGGAGATGG+AGG | 0.508883 | 4_3:+54508474 | Msa0648090:CDS |
| GCCTCAATTGTTTCAGAAGG+TGG | 0.512921 | 4_3:+54508452 | Msa0648090:CDS |
| AAAGAAGCAGAGGTAGTTGA+AGG | 0.515702 | 4_3:+54510992 | Msa0648090:CDS |
| ACAGGTACACCTGGCCCAGC+TGG | 0.517233 | 4_3:+54510926 | Msa0648090:intron |
| AATGGAAACAAATGAGGCAT+TGG | 0.521286 | 4_3:-54511134 | None:intergenic |
| TGGAAAAGAAAGATGATGTC+TGG | 0.523137 | 4_3:+54508333 | Msa0648090:exon |
| ATTTCTCTTTGTAACCAGCT+GGG | 0.558097 | 4_3:-54510940 | None:intergenic |
| CTCAAACTCACATTCACTCC+AGG | 0.561646 | 4_3:+54508510 | Msa0648090:CDS |
| GATGCCTCAATTGTTTCAGA+AGG | 0.566397 | 4_3:+54508449 | Msa0648090:CDS |
| CTACCTCTGCTTCTTTGATG+CGG | 0.573581 | 4_3:-54510985 | None:intergenic |
| ATGTGCCAGCAAATGAAGCA+TGG | 0.580036 | 4_3:+54508382 | Msa0648090:CDS |
| TCTAATCAAGCAAATGCACT+AGG | 0.583851 | 4_3:-54511391 | None:intergenic |
| TCCACCTTCTGAAACAATTG+AGG | 0.585010 | 4_3:-54508453 | None:intergenic |
| TGTGCCAGCAAATGAAGCAT+GGG | 0.591233 | 4_3:+54508383 | Msa0648090:CDS |
| GGAGTTTGAACAGGTACACC+TGG | 0.591936 | 4_3:+54510917 | Msa0648090:intron |
| TGGCTCAATGGAAACAAATG+AGG | 0.595922 | 4_3:-54511140 | None:intergenic |
| GAAGCAGAGGTAGTTGAAGG+TGG | 0.597763 | 4_3:+54510995 | Msa0648090:CDS |
| ACTTCCATAATGTTAGCCAA+TGG | 0.636775 | 4_3:-54511160 | None:intergenic |
| AAACCGCATCAAAGAAGCAG+AGG | 0.668061 | 4_3:+54510982 | Msa0648090:CDS |
| TGGTATTGGAAAACTCGTTG+AGG | 0.676186 | 4_3:+54508422 | Msa0648090:CDS |
| TCATCTGAGAAATAATACAA+AGG | 0.684644 | 4_3:-54511319 | None:intergenic |
| GAATTACCTCAACAGAAACA+AGG | 0.699162 | 4_3:+54511189 | Msa0648090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAAAAAAAAATAAAAG+GGG | - | chr4_3:54510605-54510624 | None:intergenic | 10.0% |
| !! | CACTTAAAAAAAAAATAAAA+GGG | - | chr4_3:54510606-54510625 | None:intergenic | 10.0% |
| !!! | TTATTAATATATTTTCTTTG+GGG | - | chr4_3:54510779-54510798 | None:intergenic | 10.0% |
| !!! | ATTGTGTTTTTTTTTTTTAT+AGG | - | chr4_3:54510865-54510884 | None:intergenic | 10.0% |
| !! | AATAATCCCAAAATATATTA+CGG | + | chr4_3:54508256-54508275 | Msa0648090:five_prime_UTR | 15.0% |
| !! | CACATGATTATTATATATTT+CGG | + | chr4_3:54508867-54508886 | Msa0648090:intron | 15.0% |
| !! | ACATGATTATTATATATTTC+GGG | + | chr4_3:54508868-54508887 | Msa0648090:intron | 15.0% |
| !! | TATATAAGTAGTTTCATATT+TGG | + | chr4_3:54509583-54509602 | Msa0648090:intron | 15.0% |
| !! | AAAATCAACAATTCTAAATT+AGG | + | chr4_3:54510228-54510247 | Msa0648090:intron | 15.0% |
| !! | AAATCAACAATTCTAAATTA+GGG | + | chr4_3:54510229-54510248 | Msa0648090:intron | 15.0% |
| !! | CCACTTAAAAAAAAAATAAA+AGG | - | chr4_3:54510607-54510626 | None:intergenic | 15.0% |
| !!! | CCTTTTATTTTTTTTTTAAG+TGG | + | chr4_3:54510604-54510623 | Msa0648090:intron | 15.0% |
| !!! | TTTTTTTTAAGTGGAAAATA+TGG | + | chr4_3:54510613-54510632 | Msa0648090:intron | 15.0% |
| !! | AATACTAAATACAAATCTAA+AGG | + | chr4_3:54510816-54510835 | Msa0648090:intron | 15.0% |
| !!! | TGTTTTTTTTTTTTATAGGA+GGG | - | chr4_3:54510861-54510880 | None:intergenic | 15.0% |
| !! | ATAGGTTATAAAATGATTAT+TGG | + | chr4_3:54511362-54511381 | Msa0648090:three_prime_UTR | 15.0% |
| !! | TAGGTTATAAAATGATTATT+GGG | + | chr4_3:54511363-54511382 | Msa0648090:three_prime_UTR | 15.0% |
| !! | ATAATCCCAAAATATATTAC+GGG | + | chr4_3:54508257-54508276 | Msa0648090:five_prime_UTR | 20.0% |
| !! | TAAATAATATATGATTGACC+TGG | - | chr4_3:54508531-54508550 | None:intergenic | 20.0% |
| !! | GGTCAATCATATATTATTTA+TGG | + | chr4_3:54508531-54508550 | Msa0648090:intron | 20.0% |
| !!! | TTTTCATATATAGTTGTGTT+AGG | - | chr4_3:54508771-54508790 | None:intergenic | 20.0% |
| !! | AGAAAGTTATGTATATGTAT+AGG | - | chr4_3:54508794-54508813 | None:intergenic | 20.0% |
| !! | TATATATTTCGGGAAAAATT+TGG | + | chr4_3:54508878-54508897 | Msa0648090:intron | 20.0% |
| !! | AAATTCAATAAGTGTATGTT+TGG | + | chr4_3:54509070-54509089 | Msa0648090:intron | 20.0% |
| !!! | AATCACTTTGTAGTATTTTT+GGG | - | chr4_3:54509968-54509987 | None:intergenic | 20.0% |
| !!! | TAATCACTTTGTAGTATTTT+TGG | - | chr4_3:54509969-54509988 | None:intergenic | 20.0% |
| !!! | CATTATTCAAGTTATTACAT+TGG | + | chr4_3:54510134-54510153 | Msa0648090:intron | 20.0% |
| !! | AACAATTATAAATTGCAGTT+TGG | + | chr4_3:54510279-54510298 | Msa0648090:intron | 20.0% |
| !!! | GTTTTTTTTTTTTATAGGAG+GGG | - | chr4_3:54510860-54510879 | None:intergenic | 20.0% |
| !!! | GTGTTTTTTTTTTTTATAGG+AGG | - | chr4_3:54510862-54510881 | None:intergenic | 20.0% |
| !!! | CTCTTTTGAGTTTTAAAATG+TGG | - | chr4_3:54508302-54508321 | None:intergenic | 25.0% |
| !!! | TCAAAAGAGTACATTTTTTG+TGG | + | chr4_3:54508313-54508332 | Msa0648090:five_prime_UTR | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr4_3:54508602-54508621 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr4_3:54508601-54508620 | Msa0648090:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4_3:54508614-54508633 | Msa0648090:intron | 25.0% |
| ! | TTCTTTACAATCACGTATAA+AGG | + | chr4_3:54509491-54509510 | Msa0648090:intron | 25.0% |
| ! | ATGAAACTAATAGCATGATT+TGG | - | chr4_3:54509636-54509655 | None:intergenic | 25.0% |
| ! | ACTTGAATAATGAGAATGTA+AGG | - | chr4_3:54510126-54510145 | None:intergenic | 25.0% |
| ! | CTGAAATTAACAATTCTCTT+TGG | + | chr4_3:54510192-54510211 | Msa0648090:intron | 25.0% |
| ! | AACAATTCTAAATTAGGGTT+TGG | + | chr4_3:54510234-54510253 | Msa0648090:intron | 25.0% |
| ! | ACAATTCTAAATTAGGGTTT+GGG | + | chr4_3:54510235-54510254 | Msa0648090:intron | 25.0% |
| !!! | GATGCTTGTTATTTGTTAAT+GGG | - | chr4_3:54510332-54510351 | None:intergenic | 25.0% |
| !!! | TGATGCTTGTTATTTGTTAA+TGG | - | chr4_3:54510333-54510352 | None:intergenic | 25.0% |
| ! | GAAAAAACATGAAACAAACA+TGG | + | chr4_3:54510385-54510404 | Msa0648090:intron | 25.0% |
| !!! | GTAACATTGATTGTTTTGAT+TGG | + | chr4_3:54510896-54510915 | Msa0648090:intron | 25.0% |
| !!! | CGTTTTGAAATAATAGAGAA+AGG | + | chr4_3:54511052-54511071 | Msa0648090:CDS | 25.0% |
| ! | TCATCTGAGAAATAATACAA+AGG | - | chr4_3:54511322-54511341 | None:intergenic | 25.0% |
| ! | TGCTACCCGTAATATATTTT+GGG | - | chr4_3:54508265-54508284 | None:intergenic | 30.0% |
| ! | TTGCTACCCGTAATATATTT+TGG | - | chr4_3:54508266-54508285 | None:intergenic | 30.0% |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4_3:54508576-54508595 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4_3:54508627-54508646 | Msa0648090:intron | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr4_3:54508699-54508718 | None:intergenic | 30.0% |
| CTAAAAACTGAGTCAATTGA+TGG | - | chr4_3:54508835-54508854 | None:intergenic | 30.0% | |
| TACCAACATGTCTATACAAA+TGG | + | chr4_3:54508964-54508983 | Msa0648090:intron | 30.0% | |
| AACATGTCTATACAAATGGA+GGG | + | chr4_3:54508968-54508987 | Msa0648090:intron | 30.0% | |
| AATCTAGAGATTCATGTGTA+TGG | + | chr4_3:54509005-54509024 | Msa0648090:intron | 30.0% | |
| ! | TGAGCAGAAAAAGAAACTTT+TGG | + | chr4_3:54509047-54509066 | Msa0648090:intron | 30.0% |
| ! | GTAGCTCAAATTTGTTCAAA+CGG | + | chr4_3:54509228-54509247 | Msa0648090:intron | 30.0% |
| ! | CATTTTCTCTCATTTATGCT+TGG | - | chr4_3:54509283-54509302 | None:intergenic | 30.0% |
| GAGAGAAACATAAATCATGA+AGG | + | chr4_3:54509808-54509827 | Msa0648090:intron | 30.0% | |
| !!! | CATTTTTTAGCTTGTCATGT+AGG | - | chr4_3:54509885-54509904 | None:intergenic | 30.0% |
| CTTAGGATTATTACTTCAAG+AGG | - | chr4_3:54510099-54510118 | None:intergenic | 30.0% | |
| TGAGAATGTAAGGATTTCTT+AGG | - | chr4_3:54510116-54510135 | None:intergenic | 30.0% | |
| GGTTTGGGAAATCAAAATTA+GGG | + | chr4_3:54510250-54510269 | Msa0648090:intron | 30.0% | |
| AAAACATGAAACAAACATGG+AGG | + | chr4_3:54510388-54510407 | Msa0648090:intron | 30.0% | |
| TAAGTGGAAAATATGGCTAT+TGG | + | chr4_3:54510620-54510639 | Msa0648090:intron | 30.0% | |
| AAGTGGAAAATATGGCTATT+GGG | + | chr4_3:54510621-54510640 | Msa0648090:intron | 30.0% | |
| ! | GCGGTTTTCATTATCAATTT+TGG | - | chr4_3:54510969-54510988 | None:intergenic | 30.0% |
| TGCAATCTTGAGAAACATAT+AGG | + | chr4_3:54511344-54511363 | Msa0648090:three_prime_UTR | 30.0% | |
| TGGAAAAGAAAGATGATGTC+TGG | + | chr4_3:54508333-54508352 | Msa0648090:exon | 35.0% | |
| ! | AACGAGTTTTCCAATACCAA+TGG | - | chr4_3:54508421-54508440 | None:intergenic | 35.0% |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr4_3:54508694-54508713 | Msa0648090:intron | 35.0% | |
| CTCCATTTGTATAGACATGT+TGG | - | chr4_3:54508969-54508988 | None:intergenic | 35.0% | |
| CAACATGTCTATACAAATGG+AGG | + | chr4_3:54508967-54508986 | Msa0648090:intron | 35.0% | |
| ! | AACTTCTAGTTACAAGTCGT+GGG | - | chr4_3:54509176-54509195 | None:intergenic | 35.0% |
| GAGCTACAAATCACTTTAGA+AGG | - | chr4_3:54509215-54509234 | None:intergenic | 35.0% | |
| AGCGTATAGCTATAAAAGAG+TGG | + | chr4_3:54509354-54509373 | Msa0648090:intron | 35.0% | |
| ATAAAAGAGTGGTCTCGATT+AGG | + | chr4_3:54509365-54509384 | Msa0648090:intron | 35.0% | |
| ! | TTGCGATTAAATTTTTGCCC+AGG | - | chr4_3:54509426-54509445 | None:intergenic | 35.0% |
| TGCTAGCATGAAACTATATC+AGG | - | chr4_3:54509761-54509780 | None:intergenic | 35.0% | |
| !! | TTGTCATGTAGGTGTTTTTG+GGG | - | chr4_3:54509874-54509893 | None:intergenic | 35.0% |
| ! | CTTGTCATGTAGGTGTTTTT+GGG | - | chr4_3:54509875-54509894 | None:intergenic | 35.0% |
| GGGTTTGGGAAATCAAAATT+AGG | + | chr4_3:54510249-54510268 | Msa0648090:intron | 35.0% | |
| AAGAGGAGAAGGAATGAAAA+TGG | + | chr4_3:54510416-54510435 | Msa0648090:intron | 35.0% | |
| AAATAAAAGGGGCAGAATTG+AGG | - | chr4_3:54510594-54510613 | None:intergenic | 35.0% | |
| TCTGCTTCTACTTTCTATGT+TGG | - | chr4_3:54510655-54510674 | None:intergenic | 35.0% | |
| !!! | GTTTTGATTGGAGTTTGAAC+AGG | + | chr4_3:54510908-54510927 | Msa0648090:intron | 35.0% |
| ATTTCTCTTTGTAACCAGCT+GGG | - | chr4_3:54510943-54510962 | None:intergenic | 35.0% | |
| AATTTCTCTTTGTAACCAGC+TGG | - | chr4_3:54510944-54510963 | None:intergenic | 35.0% | |
| GAAGGTGGATACTTAGAATT+TGG | + | chr4_3:54511010-54511029 | Msa0648090:CDS | 35.0% | |
| AATGGAAACAAATGAGGCAT+TGG | - | chr4_3:54511137-54511156 | None:intergenic | 35.0% | |
| ATTTGTTTCCATTGAGCCAT+TGG | + | chr4_3:54511144-54511163 | Msa0648090:CDS | 35.0% | |
| ACTTCCATAATGTTAGCCAA+TGG | - | chr4_3:54511163-54511182 | None:intergenic | 35.0% | |
| GTTTCTGTTGAGGTAATTCT+TGG | - | chr4_3:54511188-54511207 | None:intergenic | 35.0% | |
| GAATTACCTCAACAGAAACA+AGG | + | chr4_3:54511189-54511208 | Msa0648090:CDS | 35.0% | |
| TCTAATCAAGCAAATGCACT+AGG | - | chr4_3:54511394-54511413 | None:intergenic | 35.0% | |
| AATGAAGCATGGGATCTCTT+TGG | + | chr4_3:54508393-54508412 | Msa0648090:CDS | 40.0% | |
| ! | TGGTATTGGAAAACTCGTTG+AGG | + | chr4_3:54508422-54508441 | Msa0648090:CDS | 40.0% |
| GATGCCTCAATTGTTTCAGA+AGG | + | chr4_3:54508449-54508468 | Msa0648090:CDS | 40.0% | |
| !! | TCCACCTTCTGAAACAATTG+AGG | - | chr4_3:54508456-54508475 | None:intergenic | 40.0% |
| ! | ACTTCTAGTTACAAGTCGTG+GGG | - | chr4_3:54509175-54509194 | None:intergenic | 40.0% |
| ! | CAACTTCTAGTTACAAGTCG+TGG | - | chr4_3:54509177-54509196 | None:intergenic | 40.0% |
| !!! | TGTCATGTAGGTGTTTTTGG+GGG | - | chr4_3:54509873-54509892 | None:intergenic | 40.0% |
| ! | GCTTGTCATGTAGGTGTTTT+TGG | - | chr4_3:54509876-54509895 | None:intergenic | 40.0% |
| CAGAATTGAGGCAAATGTTC+AGG | - | chr4_3:54510582-54510601 | None:intergenic | 40.0% | |
| GAAAATATGGCTATTGGGCT+GGG | + | chr4_3:54510626-54510645 | Msa0648090:intron | 40.0% | |
| AAAGAAGCAGAGGTAGTTGA+AGG | + | chr4_3:54510992-54511011 | Msa0648090:CDS | 40.0% | |
| TGGCTCAATGGAAACAAATG+AGG | - | chr4_3:54511143-54511162 | None:intergenic | 40.0% | |
| AATGTTAGCCAATGGCTCAA+TGG | - | chr4_3:54511155-54511174 | None:intergenic | 40.0% | |
| ! | TGAGCCATTGGCTAACATTA+TGG | + | chr4_3:54511156-54511175 | Msa0648090:CDS | 40.0% |
| !! | TTGTAGCCTTGTTTCTGTTG+AGG | - | chr4_3:54511198-54511217 | None:intergenic | 40.0% |
| ! | ATGCTTCATTTGCTGGCACA+TGG | - | chr4_3:54508383-54508402 | None:intergenic | 45.0% |
| ATGTGCCAGCAAATGAAGCA+TGG | + | chr4_3:54508382-54508401 | Msa0648090:CDS | 45.0% | |
| TGTGCCAGCAAATGAAGCAT+GGG | + | chr4_3:54508383-54508402 | Msa0648090:CDS | 45.0% | |
| AGATCCCATGCTTCATTTGC+TGG | - | chr4_3:54508390-54508409 | None:intergenic | 45.0% | |
| CTCTTTGGCACCATTGGTAT+TGG | + | chr4_3:54508408-54508427 | Msa0648090:CDS | 45.0% | |
| GCCTCAATTGTTTCAGAAGG+TGG | + | chr4_3:54508452-54508471 | Msa0648090:CDS | 45.0% | |
| CTCAAACTCACATTCACTCC+AGG | + | chr4_3:54508510-54508529 | Msa0648090:CDS | 45.0% | |
| CCAGGAATTTCTTAGAGCCT+GGG | + | chr4_3:54509406-54509425 | Msa0648090:intron | 45.0% | |
| !!! | GTCATGTAGGTGTTTTTGGG+GGG | - | chr4_3:54509872-54509891 | None:intergenic | 45.0% |
| TGGGCTGTGATGCTTTGATT+TGG | - | chr4_3:54509925-54509944 | None:intergenic | 45.0% | |
| GCCTGTTGGTGTGTTTGTTT+GGG | - | chr4_3:54509944-54509963 | None:intergenic | 45.0% | |
| !!! | TAGTATTTTTGGGCGCCTGT+TGG | - | chr4_3:54509958-54509977 | None:intergenic | 45.0% |
| CAAACATGGAGGAAGTGAAG+AGG | + | chr4_3:54510399-54510418 | Msa0648090:intron | 45.0% | |
| ! | AAGAGGCGCAAATTGAGAGA+GGG | + | chr4_3:54510459-54510478 | Msa0648090:intron | 45.0% |
| AGAGATTGAGTCACTGAGAG+AGG | + | chr4_3:54510503-54510522 | Msa0648090:intron | 45.0% | |
| GAGATTGAGTCACTGAGAGA+GGG | + | chr4_3:54510504-54510523 | Msa0648090:intron | 45.0% | |
| GGAGAGTCACGATAAGTTAG+AGG | + | chr4_3:54510525-54510544 | Msa0648090:intron | 45.0% | |
| GAGTCACGATAAGTTAGAGG+AGG | + | chr4_3:54510528-54510547 | Msa0648090:intron | 45.0% | |
| GGAAAATATGGCTATTGGGC+TGG | + | chr4_3:54510625-54510644 | Msa0648090:intron | 45.0% | |
| TAGAAAGTAGAAGCAGAGCC+TGG | + | chr4_3:54510658-54510677 | Msa0648090:intron | 45.0% | |
| AGAAAGTAGAAGCAGAGCCT+GGG | + | chr4_3:54510659-54510678 | Msa0648090:intron | 45.0% | |
| GTCAACCTACTTAGCATCAC+CGG | - | chr4_3:54510730-54510749 | None:intergenic | 45.0% | |
| AAACCGCATCAAAGAAGCAG+AGG | + | chr4_3:54510982-54511001 | Msa0648090:CDS | 45.0% | |
| CTACCTCTGCTTCTTTGATG+CGG | - | chr4_3:54510988-54511007 | None:intergenic | 45.0% | |
| !!! | TTTATTAATATATTTTCTTT+GGG | - | chr4_3:54510780-54510799 | None:intergenic | 5.0% |
| !!! | TTTTATTAATATATTTTCTT+TGG | - | chr4_3:54510781-54510800 | None:intergenic | 5.0% |
| !! | AAAGAAAATATATTAATAAA+AGG | + | chr4_3:54510780-54510799 | Msa0648090:intron | 5.0% |
| TGGGATCTCTTTGGCACCAT+TGG | + | chr4_3:54508402-54508421 | Msa0648090:CDS | 50.0% | |
| CAGAAGGTGGAGCTAGTTGA+AGG | + | chr4_3:54508465-54508484 | Msa0648090:CDS | 50.0% | |
| GTGGAGCTAGTTGAAGGAGA+TGG | + | chr4_3:54508471-54508490 | Msa0648090:CDS | 50.0% | |
| GAGCTAGTTGAAGGAGATGG+AGG | + | chr4_3:54508474-54508493 | Msa0648090:CDS | 50.0% | |
| GTTGAAGGAGATGGAGGAGT+TGG | + | chr4_3:54508480-54508499 | Msa0648090:CDS | 50.0% | |
| !! | CTCGATTAGGTTGACACCAG+TGG | + | chr4_3:54509378-54509397 | Msa0648090:intron | 50.0% |
| !! | GATTAGGTTGACACCAGTGG+CGG | + | chr4_3:54509381-54509400 | Msa0648090:intron | 50.0% |
| GCCAGGAATTTCTTAGAGCC+TGG | + | chr4_3:54509405-54509424 | Msa0648090:intron | 50.0% | |
| !! | CCCAGGCTCTAAGAAATTCC+TGG | - | chr4_3:54509409-54509428 | None:intergenic | 50.0% |
| GCCCAAACAAACACACCAAC+AGG | + | chr4_3:54509940-54509959 | Msa0648090:intron | 50.0% | |
| CGCCTGTTGGTGTGTTTGTT+TGG | - | chr4_3:54509945-54509964 | None:intergenic | 50.0% | |
| TGGAGGAAGTGAAGAGGAGA+AGG | + | chr4_3:54510405-54510424 | Msa0648090:intron | 50.0% | |
| TGGAGACTGAGAGTTGAGAG+AGG | + | chr4_3:54510436-54510455 | Msa0648090:intron | 50.0% | |
| CTGAGAGTTGAGAGAGGAAG+AGG | + | chr4_3:54510442-54510461 | Msa0648090:intron | 50.0% | |
| ! | GAAGAGGCGCAAATTGAGAG+AGG | + | chr4_3:54510458-54510477 | Msa0648090:intron | 50.0% |
| TGACACCGGTGATGCTAAGT+AGG | + | chr4_3:54510722-54510741 | Msa0648090:intron | 50.0% | |
| GGAGTTTGAACAGGTACACC+TGG | + | chr4_3:54510917-54510936 | Msa0648090:intron | 50.0% | |
| GAAGCAGAGGTAGTTGAAGG+TGG | + | chr4_3:54510995-54511014 | Msa0648090:CDS | 50.0% | |
| ! | AGCATCACCGGTGTCAACCA+GGG | - | chr4_3:54510718-54510737 | None:intergenic | 55.0% |
| ! | TAGCATCACCGGTGTCAACC+AGG | - | chr4_3:54510719-54510738 | None:intergenic | 55.0% |
| TCTTTGTAACCAGCTGGGCC+AGG | - | chr4_3:54510938-54510957 | None:intergenic | 55.0% | |
| GAAATTCCTGGCTCCGCCAC+TGG | - | chr4_3:54509397-54509416 | None:intergenic | 60.0% | |
| ! | TTACACCCCCCAGCTAGCCT+GGG | - | chr4_3:54510691-54510710 | None:intergenic | 60.0% |
| TAACCGCCCCTGGTTGACAC+CGG | + | chr4_3:54510708-54510727 | Msa0648090:intron | 60.0% | |
| ! | GCATCACCGGTGTCAACCAG+GGG | - | chr4_3:54510717-54510736 | None:intergenic | 60.0% |
| ! | TTGACACCAGTGGCGGAGCC+AGG | + | chr4_3:54509388-54509407 | Msa0648090:intron | 65.0% |
| GTTACACCCCCCAGCTAGCC+TGG | - | chr4_3:54510692-54510711 | None:intergenic | 65.0% | |
| ! | TCACCGGTGTCAACCAGGGG+CGG | - | chr4_3:54510714-54510733 | None:intergenic | 65.0% |
| ACAGGTACACCTGGCCCAGC+TGG | + | chr4_3:54510926-54510945 | Msa0648090:intron | 65.0% | |
| ! | GGCTAGCGCCCAGGCTAGCT+GGG | + | chr4_3:54510680-54510699 | Msa0648090:intron | 70.0% |
| ! | GCTAGCGCCCAGGCTAGCTG+GGG | + | chr4_3:54510681-54510700 | Msa0648090:intron | 70.0% |
| ! | CTAGCGCCCAGGCTAGCTGG+GGG | + | chr4_3:54510682-54510701 | Msa0648090:intron | 70.0% |
| ! | TAGCGCCCAGGCTAGCTGGG+GGG | + | chr4_3:54510683-54510702 | Msa0648090:intron | 70.0% |
| !! | CAGAGCCTGGGCTAGCGCCC+AGG | + | chr4_3:54510671-54510690 | Msa0648090:intron | 75.0% |
| ! | GCTAGCCTGGGCGCTAGCCC+AGG | - | chr4_3:54510679-54510698 | None:intergenic | 75.0% |
| ! | GGGCTAGCGCCCAGGCTAGC+TGG | + | chr4_3:54510679-54510698 | Msa0648090:intron | 75.0% |
| ! | CTGGGGGGTGTAACCGCCCC+TGG | + | chr4_3:54510698-54510717 | Msa0648090:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54508246 | 54511451 | 54508246 | ID=Msa0648090;Name=Msa0648090 |
| chr4_3 | mRNA | 54508246 | 54511451 | 54508246 | ID=Msa0648090-mRNA-1;Parent=Msa0648090;Name=Msa0648090-mRNA-1;_AED=0.29;_eAED=0.29;_QI=99|1|1|1|1|1|2|229|159 |
| chr4_3 | exon | 54508246 | 54508531 | 54508246 | ID=Msa0648090-mRNA-1:exon:13790;Parent=Msa0648090-mRNA-1 |
| chr4_3 | exon | 54510930 | 54511451 | 54510930 | ID=Msa0648090-mRNA-1:exon:13791;Parent=Msa0648090-mRNA-1 |
| chr4_3 | five_prime_UTR | 54508246 | 54508344 | 54508246 | ID=Msa0648090-mRNA-1:five_prime_utr;Parent=Msa0648090-mRNA-1 |
| chr4_3 | CDS | 54508345 | 54508531 | 54508345 | ID=Msa0648090-mRNA-1:cds;Parent=Msa0648090-mRNA-1 |
| chr4_3 | CDS | 54510930 | 54511222 | 54510930 | ID=Msa0648090-mRNA-1:cds;Parent=Msa0648090-mRNA-1 |
| chr4_3 | three_prime_UTR | 54511223 | 54511451 | 54511223 | ID=Msa0648090-mRNA-1:three_prime_utr;Parent=Msa0648090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
