AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0403340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403340 MtrunA17_Chr3g0093971 93.443 427 28 0 2 428 28 454 0.0 842
Msa0403340 MtrunA17_Chr2g0285351 44.598 435 222 5 4 424 36 465 2.49e-131 386
Msa0403340 MtrunA17_Chr2g0285371 43.318 434 228 5 4 424 37 465 3.93e-129 380
Msa0403340 MtrunA17_Chr2g0285381 43.560 427 230 4 4 424 40 461 4.07e-128 378
Msa0403340 MtrunA17_Chr4g0009681 42.494 433 232 8 2 424 38 463 1.13e-120 359
Msa0403340 MtrunA17_Chr4g0009711 42.263 433 233 8 2 424 41 466 1.01e-119 357
Msa0403340 MtrunA17_Chr3g0133011 42.273 440 231 6 4 424 57 492 1.14e-119 357
Msa0403340 MtrunA17_Chr4g0009701 41.339 433 237 8 2 424 41 466 6.65e-119 355
Msa0403340 MtrunA17_Chr4g0009651 40.416 433 241 8 2 424 41 466 1.59e-115 346
Msa0403340 MtrunA17_Chr4g0009661 40.878 433 239 8 2 424 41 466 5.29e-115 345
Msa0403340 MtrunA17_Chr4g0009671 41.395 430 231 9 7 424 11 431 1.27e-114 342
Msa0403340 MtrunA17_Chr4g0009641 37.963 432 229 9 2 424 41 442 7.45e-102 310
Msa0403340 MtrunA17_Chr4g0009721 36.721 433 210 9 2 424 37 415 7.47e-92 283
Msa0403340 MtrunA17_Chr8g0338461 32.839 472 262 8 3 428 33 495 2.78e-85 269
Msa0403340 MtrunA17_Chr7g0234051 32.189 466 266 7 3 424 32 491 1.29e-82 262
Msa0403340 MtrunA17_Chr7g0249431 31.343 469 269 10 3 423 30 493 2.19e-78 251
Msa0403340 MtrunA17_Chr7g0234041 31.106 434 226 11 4 383 30 444 4.65e-59 200
Msa0403340 MtrunA17_Chr2g0304931 27.818 417 271 11 19 422 56 455 1.71e-48 171
Msa0403340 MtrunA17_Chr3g0094811 27.752 436 267 13 10 423 39 448 3.10e-48 171
Msa0403340 MtrunA17_Chr2g0309511 28.770 431 277 12 2 420 41 453 1.25e-47 169
Msa0403340 MtrunA17_Chr2g0281621 28.935 432 272 14 13 427 47 460 3.15e-47 168
Msa0403340 MtrunA17_Chr1g0199991 28.074 431 281 11 2 420 34 447 4.59e-47 167
Msa0403340 MtrunA17_Chr4g0068841 28.062 449 277 12 4 424 42 472 5.10e-47 168
Msa0403340 MtrunA17_Chr1g0199971 27.972 429 280 11 4 420 36 447 2.52e-46 166
Msa0403340 MtrunA17_Chr7g0219051 27.523 436 288 13 3 424 38 459 4.27e-46 165
Msa0403340 MtrunA17_Chr3g0118851 28.706 425 277 12 4 423 81 484 5.45e-46 166
Msa0403340 MtrunA17_Chr2g0309521 27.945 433 278 14 2 420 41 453 1.06e-45 164
Msa0403340 MtrunA17_Chr3g0118841 28.132 423 281 10 4 423 82 484 1.33e-45 164
Msa0403340 MtrunA17_Chr4g0038311 26.328 433 292 12 6 423 37 457 4.69e-45 162
Msa0403340 MtrunA17_Chr2g0309541 27.918 437 285 12 1 424 39 458 1.15e-44 161
Msa0403340 MtrunA17_Chr4g0047861 27.972 429 272 16 4 412 57 468 3.17e-44 160
Msa0403340 MtrunA17_Chr2g0318911 26.959 434 291 12 1 424 41 458 6.94e-44 159
Msa0403340 MtrunA17_Chr2g0279381 36.916 214 114 3 184 382 4 211 6.56e-43 150
Msa0403340 MtrunA17_Chr4g0028271 27.869 427 262 11 17 427 99 495 4.84e-42 155
Msa0403340 MtrunA17_Chr3g0131731 25.115 434 299 10 4 423 34 455 1.65e-41 152
Msa0403340 MtrunA17_Chr1g0153881 27.804 428 276 13 2 423 91 491 3.09e-41 152
Msa0403340 MtrunA17_Chr4g0020241 26.619 417 270 13 18 423 90 481 7.44e-41 151
Msa0403340 MtrunA17_Chr4g0068861 29.136 405 243 16 4 380 88 476 1.22e-40 150
Msa0403340 MtrunA17_Chr4g0028281 26.887 424 270 11 17 427 97 493 3.47e-40 150
Msa0403340 MtrunA17_Chr3g0118881 28.182 440 278 13 4 428 81 497 4.37e-40 149
Msa0403340 MtrunA17_Chr1g0171411 27.896 423 258 13 17 422 85 477 5.04e-40 149
Msa0403340 MtrunA17_Chr2g0279371 46.429 140 74 1 29 167 41 180 1.22e-39 140
Msa0403340 MtrunA17_Chr7g0221551 24.605 443 286 13 4 423 34 451 1.90e-39 147
Msa0403340 MtrunA17_Chr2g0327401 27.381 420 276 10 17 428 102 500 4.87e-39 147
Msa0403340 MtrunA17_Chr1g0199171 26.364 440 287 11 3 427 71 488 4.91e-39 147
Msa0403340 MtrunA17_Chr2g0281641 28.424 387 239 13 47 412 1 370 6.09e-39 144
Msa0403340 MtrunA17_Chr3g0090331 24.480 433 294 13 2 424 76 485 9.44e-39 145
Msa0403340 MtrunA17_Chr8g0385871 25.893 448 280 16 2 423 35 456 3.73e-38 144
Msa0403340 MtrunA17_Chr4g0028261 26.478 423 274 10 17 427 120 517 7.82e-38 144
Msa0403340 MtrunA17_Chr3g0118831 26.807 429 259 11 4 428 81 458 4.98e-37 140
Msa0403340 MtrunA17_Chr3g0118861 27.626 438 253 14 4 427 79 466 6.75e-37 140
Msa0403340 MtrunA17_Chr4g0028241 25.926 432 266 12 18 427 92 491 1.55e-36 139
Msa0403340 MtrunA17_Chr3g0126051 25.874 429 293 12 3 418 36 452 1.80e-36 139
Msa0403340 MtrunA17_Chr3g0126031 24.471 425 302 9 3 418 31 445 2.58e-35 135
Msa0403340 MtrunA17_Chr5g0431301 25.287 435 298 12 3 422 32 454 3.69e-35 135
Msa0403340 MtrunA17_Chr2g0327371 26.327 471 267 17 4 428 79 515 5.58e-35 135
Msa0403340 MtrunA17_Chr1g0153941 25.708 459 273 14 2 423 79 506 4.12e-34 133
Msa0403340 MtrunA17_Chr2g0327381 24.895 478 287 16 4 427 79 538 6.02e-34 133
Msa0403340 MtrunA17_Chr3g0118891 26.698 427 250 12 4 423 81 451 2.20e-33 130
Msa0403340 MtrunA17_Chr1g0204191 24.362 431 261 15 10 422 100 483 4.14e-29 119
Msa0403340 MtrunA17_Chr5g0447441 24.292 424 278 13 11 422 39 431 1.48e-27 114
Msa0403340 MtrunA17_Chr4g0044051 23.150 419 281 10 16 422 46 435 2.86e-25 107
Msa0403340 MtrunA17_Chr1g0153931 34.426 183 111 5 2 180 77 254 5.81e-24 100
Msa0403340 MtrunA17_Chr1g0165811 28.774 212 137 5 10 219 39 238 9.35e-24 100
Msa0403340 MtrunA17_Chr1g0153921 30.043 233 128 9 200 423 4 210 1.06e-17 81.6
Msa0403340 MtrunA17_Chr2g0285401 43.333 60 34 0 329 388 31 90 4.83e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0403340 AT1G33540.1 46.083 434 216 7 4 424 32 460 4.67e-132 388
Msa0403340 AT5G36180.1 44.706 425 212 5 2 424 34 437 7.44e-127 374
Msa0403340 AT1G73300.1 44.444 423 212 5 4 424 36 437 1.70e-126 373
Msa0403340 AT1G73300.2 44.444 423 212 5 4 424 36 437 1.70e-126 373
Msa0403340 AT1G73310.1 45.154 423 209 5 4 424 36 437 1.47e-125 371
Msa0403340 AT3G10450.1 43.868 424 217 4 2 424 30 433 1.68e-125 370
Msa0403340 AT1G73280.1 44.444 423 212 5 2 422 34 435 1.91e-125 370
Msa0403340 AT1G73270.2 45.647 425 208 5 2 424 34 437 5.67e-125 369
Msa0403340 AT1G73270.1 45.647 425 208 5 2 424 34 437 5.89e-125 370
Msa0403340 AT2G23000.1 44.884 430 208 6 2 424 26 433 6.83e-124 367
Msa0403340 AT2G23000.2 44.884 430 208 6 2 424 26 433 6.83e-124 367
Msa0403340 AT1G33540.2 44.869 419 213 7 19 424 4 417 7.00e-123 363
Msa0403340 AT1G73290.1 43.735 423 213 6 4 424 35 434 7.19e-122 361
Msa0403340 AT3G12203.3 43.128 422 218 4 4 424 12 412 1.07e-121 360
Msa0403340 AT3G12203.1 43.128 422 218 4 4 424 33 433 3.25e-121 360
Msa0403340 AT2G22980.1 43.632 424 210 7 4 424 29 426 6.97e-120 356
Msa0403340 AT2G22990.1 41.943 422 226 5 4 424 26 429 2.64e-119 355
Msa0403340 AT2G22920.2 42.925 424 219 5 4 424 28 431 5.12e-119 354
Msa0403340 AT2G22970.1 43.499 423 216 6 4 424 28 429 2.19e-118 352
Msa0403340 AT3G10450.4 44.615 390 200 2 2 390 30 404 9.07e-118 350
Msa0403340 AT3G12220.1 43.326 427 219 5 4 428 30 435 3.64e-117 349
Msa0403340 AT2G23010.1 43.365 422 222 6 4 424 28 433 3.75e-117 349
Msa0403340 AT2G23010.2 43.128 422 223 6 4 424 28 433 1.42e-116 348
Msa0403340 AT1G73310.2 45.337 386 193 3 4 387 36 405 1.78e-116 347
Msa0403340 AT3G10450.2 42.506 407 213 4 19 424 4 390 7.80e-115 342
Msa0403340 AT5G09640.1 40.639 438 237 9 2 422 28 459 1.53e-113 341
Msa0403340 AT2G22990.5 40.995 422 221 6 4 424 26 420 1.06e-112 337
Msa0403340 AT1G73290.3 44.156 385 195 4 4 386 35 401 1.69e-112 336
Msa0403340 AT2G22990.4 41.750 400 215 4 4 402 26 408 2.50e-111 333
Msa0403340 AT2G22970.3 43.424 403 206 5 4 404 28 410 2.98e-111 334
Msa0403340 AT2G22990.3 41.646 401 216 4 4 403 26 409 3.35e-111 335
Msa0403340 AT2G22970.4 43.284 402 206 5 4 403 28 409 5.17e-111 333
Msa0403340 AT2G22980.2 42.680 403 203 6 4 403 29 406 5.59e-111 333
Msa0403340 AT2G22980.4 42.786 402 202 6 4 402 29 405 1.65e-110 332
Msa0403340 AT3G12240.1 40.426 423 229 5 4 424 31 432 2.67e-108 327
Msa0403340 AT3G12230.1 40.521 422 230 4 4 424 30 431 4.54e-108 326
Msa0403340 AT2G22920.1 43.081 383 200 3 4 383 28 395 6.29e-108 325
Msa0403340 AT3G12220.2 41.990 412 216 5 19 428 15 405 1.69e-107 323
Msa0403340 AT3G10450.3 43.164 373 196 2 19 390 4 361 4.93e-107 321
Msa0403340 AT3G12203.2 40.909 396 212 4 30 424 1 375 2.27e-106 320
Msa0403340 AT1G73280.2 44.767 344 172 3 2 343 34 361 2.61e-99 301
Msa0403340 AT2G22980.3 43.188 345 170 6 4 343 29 352 7.00e-91 279
Msa0403340 AT3G12220.3 38.263 426 190 5 4 428 30 383 3.64e-90 278
Msa0403340 AT2G22920.4 45.364 302 149 2 4 304 28 314 1.61e-87 269
Msa0403340 AT1G73280.4 40.171 351 188 4 73 422 4 333 8.57e-87 268
Msa0403340 AT5G36180.5 40.227 353 189 4 73 424 4 335 1.46e-86 268
Msa0403340 AT5G36180.3 40.227 353 189 4 73 424 4 335 1.46e-86 268
Msa0403340 AT2G22970.2 45.364 302 148 3 4 304 28 313 2.66e-86 266
Msa0403340 AT1G73290.2 48.638 257 129 2 4 259 35 289 2.62e-84 261
Msa0403340 AT4G12910.1 33.191 467 265 7 3 428 37 497 2.21e-83 265
Msa0403340 AT2G22990.6 38.739 333 186 4 92 424 1 315 5.10e-81 253
Msa0403340 AT1G73280.3 40.122 329 175 4 95 422 1 308 7.01e-81 252
Msa0403340 AT3G25420.1 32.553 470 256 9 4 424 33 490 1.58e-80 257
Msa0403340 AT2G22990.2 38.438 333 187 4 92 424 1 315 1.63e-80 251
Msa0403340 AT5G36180.2 39.759 332 179 3 73 403 4 315 2.05e-79 248
Msa0403340 AT1G73310.3 40.823 316 170 2 73 387 4 303 1.20e-78 247
Msa0403340 AT5G36180.4 40.836 311 167 2 73 382 4 298 2.80e-76 241
Msa0403340 AT4G12910.2 33.254 421 238 6 3 382 37 455 6.16e-74 239
Msa0403340 AT2G22980.5 38.679 318 168 5 92 407 1 293 2.01e-69 222
Msa0403340 AT2G22920.3 37.079 267 146 4 160 424 6 252 8.65e-54 180
Msa0403340 AT5G23210.1 28.571 448 275 12 2 419 53 485 3.72e-53 185
Msa0403340 AT2G05850.1 28.972 428 274 12 2 418 65 473 7.97e-52 181
Msa0403340 AT3G52000.1 27.660 423 281 9 2 418 65 468 2.10e-50 177
Msa0403340 AT3G52010.1 28.671 429 273 13 2 418 66 473 1.52e-49 175
Msa0403340 AT3G52020.1 28.802 434 281 12 2 426 81 495 1.69e-49 176
Msa0403340 AT1G61130.1 28.132 423 269 12 10 414 40 445 2.85e-47 169
Msa0403340 AT2G35780.1 28.538 431 273 13 4 420 33 442 3.59e-47 168
Msa0403340 AT2G35770.1 28.842 423 267 11 4 413 41 442 5.30e-47 168
Msa0403340 AT3G10410.1 28.873 426 260 11 17 428 101 497 2.39e-45 164
Msa0403340 AT1G28110.1 26.846 447 273 15 3 423 34 452 3.51e-45 163
Msa0403340 AT1G28110.2 26.846 447 273 15 3 423 34 452 3.51e-45 163
Msa0403340 AT4G15100.1 28.054 442 274 13 4 419 48 471 4.34e-45 163
Msa0403340 AT3G63470.1 27.166 427 278 15 2 418 83 486 1.05e-44 162
Msa0403340 AT3G17180.1 27.146 431 276 15 17 424 55 470 1.88e-44 161
Msa0403340 AT5G22980.1 28.741 421 265 11 17 427 100 495 2.09e-44 162
Msa0403340 AT1G11080.2 28.899 436 268 13 4 413 54 473 3.93e-44 161
Msa0403340 AT1G11080.1 28.899 436 268 13 4 413 54 473 4.49e-44 160
Msa0403340 AT5G23210.3 27.384 409 257 11 2 380 53 451 5.93e-44 159
Msa0403340 AT3G45010.1 28.438 429 266 13 13 427 99 500 9.21e-44 160
Msa0403340 AT2G24000.1 26.862 443 286 13 2 424 32 456 2.17e-43 158
Msa0403340 AT4G30810.1 25.463 432 298 10 3 424 40 457 6.76e-43 157
Msa0403340 AT3G07990.1 26.761 426 289 10 4 420 37 448 1.32e-42 156
Msa0403340 AT1G43780.1 25.874 429 296 10 3 418 40 459 1.32e-42 156
Msa0403340 AT2G24010.1 26.389 432 292 13 2 424 32 446 2.73e-42 155
Msa0403340 AT5G08260.1 26.531 441 291 15 6 424 42 471 3.65e-42 155
Msa0403340 AT2G33530.1 25.714 455 270 16 3 423 36 456 8.71e-42 154
Msa0403340 AT4G30610.1 26.077 441 291 14 2 424 34 457 2.93e-41 152
Msa0403340 AT5G23210.5 27.456 397 244 11 53 419 8 390 5.58e-41 150
Msa0403340 AT5G23210.2 27.273 396 244 11 54 419 8 389 3.61e-40 148
Msa0403340 AT3G02110.1 25.792 442 283 14 4 420 41 462 2.82e-39 147
Msa0403340 AT3G17180.2 26.972 393 253 14 17 386 55 436 8.21e-39 145
Msa0403340 AT2G24010.2 25.280 447 293 14 2 424 32 461 1.56e-37 142
Msa0403340 AT2G12480.3 26.196 439 287 13 3 424 34 452 6.53e-36 138
Msa0403340 AT2G12480.4 25.882 425 270 13 3 418 34 422 9.88e-35 134
Msa0403340 AT2G24010.3 24.576 472 290 17 2 424 3 457 3.19e-34 133
Msa0403340 AT2G12480.1 25.647 425 269 13 3 418 34 420 1.01e-33 131
Msa0403340 AT5G42230.1 24.194 434 306 11 3 423 31 454 2.32e-33 130
Msa0403340 AT5G42230.2 24.194 434 306 11 3 423 31 454 2.32e-33 130
Msa0403340 AT2G12480.2 25.412 425 271 13 3 418 34 421 1.10e-32 128
Msa0403340 AT5G42240.1 24.889 450 285 14 3 424 35 459 3.44e-32 127
Msa0403340 AT1G15000.1 25.935 428 267 16 8 422 30 420 4.20e-32 127
Msa0403340 AT2G22960.1 41.481 135 74 2 290 424 51 180 1.20e-31 119
Msa0403340 AT5G23210.4 25.770 357 226 10 54 380 8 355 5.44e-31 122
Msa0403340 AT3G56540.1 38.312 154 89 3 2 154 81 229 3.47e-26 107
Msa0403340 AT2G24010.4 25.137 366 238 13 2 343 3 356 1.94e-23 101
Msa0403340 AT2G24000.2 23.404 282 186 8 160 424 125 393 2.10e-16 81.3
Msa0403340 AT5G22960.1 26.380 163 96 2 17 179 36 174 3.03e-16 77.0

Find 93 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGACACACTTTGTGTTATT+TGG 0.142435 3_2:+33069837 None:intergenic
AACATCCAAGCTCTAATTTA+TGG 0.143771 3_2:-33069235 Msa0403340:CDS
TTCAAGATGATCAAGAATTT+TGG 0.210650 3_2:-33069627 Msa0403340:CDS
CGTTTACCAATGATGGAAAT+TGG 0.228815 3_2:-33067350 Msa0403340:three_prime_UTR
CTAATTGTTCTTCGATTTGA+TGG 0.232708 3_2:-33067429 Msa0403340:exon
CCAACGAACCAAAGTAAAAT+TGG 0.255453 3_2:+33072166 None:intergenic
TTAGAGTTATTATCATATTC+TGG 0.265014 3_2:-33069509 Msa0403340:intron
GTAACCTCATAGAGTTCTTT+TGG 0.276248 3_2:+33070038 None:intergenic
GATCAATAAAGGGATTTCTT+TGG 0.279427 3_2:+33072188 None:intergenic
GAACAGGTTGTCGAATTATC+TGG 0.296761 3_2:+33069647 None:intergenic
ATCAATAAAGGGATTTCTTT+GGG 0.306892 3_2:+33072189 None:intergenic
AAGTAAAATTGGATCAATAA+AGG 0.309391 3_2:+33072177 None:intergenic
GAGCCACCACCTATGTAAAA+TGG 0.310655 3_2:+33070726 None:intergenic
CTTTATTCGTTTACCAATGA+TGG 0.320045 3_2:-33067357 Msa0403340:three_prime_UTR
TAATCGTCATCCATTGTTAA+TGG 0.320811 3_2:+33071039 None:intergenic
CTTCCATTCAAGCTTGAAAC+AGG 0.320931 3_2:-33073946 Msa0403340:CDS
CAATTACCAATTTCCATCAT+TGG 0.345478 3_2:+33067344 None:intergenic
ATCATATTCTGGTCGACATA+TGG 0.356883 3_2:-33069498 Msa0403340:CDS
CACCCTGTTTCAAGCTTGAA+TGG 0.358249 3_2:+33073943 None:intergenic
ATAGGTGGTGGCTCATATTC+AGG 0.362426 3_2:-33070717 Msa0403340:CDS
TCTATTGTCAAGAAACTTCC+TGG 0.362765 3_2:-33073982 Msa0403340:intron
TATGGATTCAATTTAAGCTT+TGG 0.364416 3_2:+33071003 None:intergenic
ATCATATTATAAACTTCCTT+CGG 0.377995 3_2:+33067479 None:intergenic
AATGGATTTGAGCTAAACTT+TGG 0.381264 3_2:+33070744 None:intergenic
CATTTAAGCCTATGTCTTTG+TGG 0.387571 3_2:-33067383 Msa0403340:three_prime_UTR
CTTTGGTTCGTTGGAGGTCC+AGG 0.395793 3_2:-33072157 Msa0403340:CDS
AATTCTTGATCATCTTGAAC+AGG 0.398440 3_2:+33069631 None:intergenic
ACATCCAAGCTCTAATTTAT+GGG 0.400923 3_2:-33069234 Msa0403340:intron
TAATCAGCACGATTGATTGC+AGG 0.403051 3_2:-33067216 None:intergenic
AGTAAAATTGGATCAATAAA+GGG 0.403601 3_2:+33072178 None:intergenic
AAGCTTAAATTGAATCCATA+TGG 0.406503 3_2:-33071000 Msa0403340:CDS
TCACGTTTATATGCTTATAC+AGG 0.423746 3_2:+33070093 None:intergenic
CACAACTGAGTACACAATCT+TGG 0.425607 3_2:-33068867 Msa0403340:CDS
GTCATTGGAGGAAAATTGTA+AGG 0.427277 3_2:-33069880 Msa0403340:CDS
AACATATGTGTCCAACCATA+TGG 0.429002 3_2:+33070985 None:intergenic
CTTACTTTGATGTTTATATG+TGG 0.434551 3_2:+33070235 None:intergenic
TCATATTCTGGTCGACATAT+GGG 0.442425 3_2:-33069497 Msa0403340:CDS
CAATTTAAATAGGGAACTAA+AGG 0.455614 3_2:-33069343 Msa0403340:intron
TGCTTATACAGGTCAACAGC+AGG 0.461979 3_2:+33070104 None:intergenic
AATTTAAATAGGGAACTAAA+GGG 0.469468 3_2:-33069342 Msa0403340:intron
CGAATTATCTGGTTTACAGC+AGG 0.475505 3_2:+33069658 None:intergenic
ATTGTCATTCTACAGGGTGC+TGG 0.485614 3_2:-33067524 Msa0403340:intron
GTTACCCATAAATTAGAGCT+TGG 0.495987 3_2:+33069230 None:intergenic
AAATGGCGTGCATGGTTTGT+TGG 0.497210 3_2:-33068814 Msa0403340:CDS
TTTGTTGGAGGTCAAGTAGC+CGG 0.504920 3_2:-33068799 Msa0403340:CDS
ACATGAGCACACATGACAAA+TGG 0.513311 3_2:-33068831 Msa0403340:CDS
TTGTTGGAGGTCAAGTAGCC+GGG 0.520844 3_2:-33068798 Msa0403340:intron
TAAAGAATCCACAAAGACAT+AGG 0.521424 3_2:+33067375 None:intergenic
CACATGACAAATGGCGTGCA+TGG 0.527186 3_2:-33068822 Msa0403340:CDS
TATAATGTTGCAGTCATTGG+AGG 0.537774 3_2:-33069892 Msa0403340:intron
GATTCAATTTAAGCTTTGGA+AGG 0.537959 3_2:+33071007 None:intergenic
TTAAATTGAATCCATATGGT+TGG 0.543123 3_2:-33070996 Msa0403340:CDS
GCTGAAAGTGCAGAACATCC+TGG 0.543233 3_2:+33072139 None:intergenic
ATAAATTAGAGCTTGGATGT+TGG 0.545384 3_2:+33069237 None:intergenic
CTTAACATATGTGGCTGTGA+AGG 0.547678 3_2:-33068153 Msa0403340:intron
CAAGACATAGTTGCTAGGAA+TGG 0.549822 3_2:+33067296 None:intergenic
TATACCAAAAGAACTCTATG+AGG 0.551652 3_2:-33070042 Msa0403340:intron
TTCCTAGCAACTATGTCTTG+TGG 0.553141 3_2:-33067293 Msa0403340:three_prime_UTR
TCTACAGGGTGCTGGACATG+TGG 0.561147 3_2:-33067516 Msa0403340:intron
GCGATAATATCCTACAGCAC+TGG 0.561436 3_2:+33069273 None:intergenic
TTTATAATATGATCAAGAGA+TGG 0.561717 3_2:-33067469 Msa0403340:CDS
AAACGATGAAAATGTGCGCA+AGG 0.564951 3_2:-33069473 Msa0403340:CDS
TCTTACTCAGAAACACAAGA+AGG 0.568210 3_2:-33070922 Msa0403340:CDS
TCATATTCAGGATTTACTAC+CGG 0.568587 3_2:-33070705 Msa0403340:CDS
TTGTGTAGATACATAGGAGT+GGG 0.572101 3_2:-33072253 Msa0403340:intron
ATAGATATACCAGTTGGGAC+TGG 0.589621 3_2:-33070949 Msa0403340:CDS
GGCTCATACATTTAAGCCGA+AGG 0.589847 3_2:-33067495 Msa0403340:CDS
TGGCGTGCATGGTTTGTTGG+AGG 0.590842 3_2:-33068811 Msa0403340:CDS
TGTGTATTGTGTAGATACAT+AGG 0.592376 3_2:-33072259 Msa0403340:intron
AGACCACTACTTAACATATG+TGG 0.592789 3_2:-33068162 Msa0403340:CDS
CAAGATTGTGTACTCAGTTG+TGG 0.595973 3_2:+33068868 None:intergenic
TGTACATAGATATACCAGTT+GGG 0.596725 3_2:-33070954 Msa0403340:CDS
AGGAGTGGGAGAAGGAGCAA+AGG 0.597291 3_2:-33072239 Msa0403340:CDS
CAAACACAAACCAGTGCTGT+AGG 0.598565 3_2:-33069283 Msa0403340:CDS
TTATACAGGGCCATTAACAA+TGG 0.601640 3_2:-33071049 Msa0403340:intron
AGATTATGAAGCTTATTCTG+AGG 0.610998 3_2:-33069814 Msa0403340:intron
GGAAGTTCCCCATCAAAACC+AGG 0.614528 3_2:+33073964 None:intergenic
TTCCACAAGACATAGTTGCT+AGG 0.617252 3_2:+33067291 None:intergenic
TAGAGCTTGGATGTTGGCGT+TGG 0.621136 3_2:+33069243 None:intergenic
CAGCCACATATGTTAAGTAG+TGG 0.621576 3_2:+33068159 None:intergenic
AGATACATAGGAGTGGGAGA+AGG 0.622687 3_2:-33072247 Msa0403340:CDS
TAGCAGTGACACACTGTGGG+TGG 0.627959 3_2:-33070893 Msa0403340:CDS
ATTGTGTAGATACATAGGAG+TGG 0.639457 3_2:-33072254 Msa0403340:intron
GCTTATACAGGTCAACAGCA+GGG 0.641149 3_2:+33070105 None:intergenic
CTATAGCAGTGACACACTGT+GGG 0.654695 3_2:-33070896 Msa0403340:CDS
TTCCATTCAAGCTTGAAACA+GGG 0.655856 3_2:-33073945 Msa0403340:intron
ATGTACATAGATATACCAGT+TGG 0.665621 3_2:-33070955 Msa0403340:CDS
ATTTAAATAGGGAACTAAAG+GGG 0.669063 3_2:-33069341 Msa0403340:intron
ACTATAGCAGTGACACACTG+TGG 0.674845 3_2:-33070897 Msa0403340:CDS
TCATTGGAGGAAAATTGTAA+GGG 0.680464 3_2:-33069879 Msa0403340:CDS
CAAGGCTCTTCATGTCAGAG+AGG 0.710069 3_2:-33069455 Msa0403340:intron
ACAATGGATGACGATTACAG+TGG 0.739292 3_2:-33071033 Msa0403340:CDS
GCAGGTGTAGTGATACAGAG+AGG 0.739848 3_2:+33069676 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAATTTATTTTAAAT+AGG + chr3_2:33068261-33068280 None:intergenic 0.0%
!!! ATTTTTTTTTTAAAAAAAAT+GGG + chr3_2:33069157-33069176 None:intergenic 0.0%
!!! AATTTTTTTTTTAAAAAAAA+TGG + chr3_2:33069158-33069177 None:intergenic 0.0%
!!! ATTTTAATTAAAAACATGTT+TGG - chr3_2:33068943-33068962 Msa0403340:intron 10.0%
!!! TTAATTTGATGATTTAAATT+TGG - chr3_2:33071383-33071402 Msa0403340:intron 10.0%
!! TAAGATAATTAGTTATATAT+AGG + chr3_2:33071550-33071569 None:intergenic 10.0%
!! TAATTACAAGTTTATAATTA+GGG + chr3_2:33073283-33073302 None:intergenic 10.0%
!! TTAATTACAAGTTTATAATT+AGG + chr3_2:33073284-33073303 None:intergenic 10.0%
!! TATGAATTTCAATAAAAAAA+AGG - chr3_2:33073381-33073400 Msa0403340:intron 10.0%
!! AGGTTTGTAAAAAATTAAAA+AGG - chr3_2:33067221-33067240 Msa0403340:three_prime_UTR 15.0%
!!! ACCTAATTTTTTTTTTTTTC+TGG - chr3_2:33067619-33067638 Msa0403340:intron 15.0%
!! ACCAGAAAAAAAAAAAAATT+AGG + chr3_2:33067623-33067642 None:intergenic 15.0%
!! ATGATGTTTATATATATGAA+CGG + chr3_2:33067883-33067902 None:intergenic 15.0%
!! ATCATTTGTATCTAATAAAA+AGG - chr3_2:33067898-33067917 Msa0403340:intron 15.0%
!!! AATAAAAAGGTGTTTAAATA+TGG - chr3_2:33067911-33067930 Msa0403340:intron 15.0%
!!! ATAAAAAGGTGTTTAAATAT+GGG - chr3_2:33067912-33067931 Msa0403340:intron 15.0%
!! TGAAAAGAATAAACAAAATA+AGG - chr3_2:33067993-33068012 Msa0403340:intron 15.0%
!! AATAAACAAAATAAGGATAA+GGG - chr3_2:33068000-33068019 Msa0403340:intron 15.0%
!! GTTAGGTATAATAATAAATA+AGG + chr3_2:33068130-33068149 None:intergenic 15.0%
!!! AAATACTGCTATTAATTTTT+TGG - chr3_2:33068673-33068692 Msa0403340:intron 15.0%
!!! TCATTCTTACTTAAATTTTA+AGG + chr3_2:33069014-33069033 None:intergenic 15.0%
!! GATTAATATCATTATTACAT+TGG + chr3_2:33069075-33069094 None:intergenic 15.0%
!!! TACATATTCTTTTTTACAAA+AGG - chr3_2:33070839-33070858 Msa0403340:intron 15.0%
!! AATGATTATAAGATTCATAA+TGG + chr3_2:33071697-33071716 None:intergenic 15.0%
!! TTCAATAATCCAATTTAAAT+AGG - chr3_2:33072352-33072371 Msa0403340:intron 15.0%
!! TCAATAATCCAATTTAAATA+GGG - chr3_2:33072353-33072372 Msa0403340:intron 15.0%
!! ATAACATTATCAAAGAAAAA+AGG + chr3_2:33072754-33072773 None:intergenic 15.0%
!!! GTACTATTTTATTAATTACA+TGG - chr3_2:33073471-33073490 Msa0403340:intron 15.0%
!!! TTCAGATTTTATAATTCAAA+CGG + chr3_2:33073779-33073798 None:intergenic 15.0%
!!! TTATAAAATCTGAAATACAT+AGG - chr3_2:33073785-33073804 Msa0403340:intron 15.0%
!!! TATAAAATCTGAAATACATA+GGG - chr3_2:33073786-33073805 Msa0403340:intron 15.0%
!! AAACAATTGAATTGCATTAT+TGG + chr3_2:33067249-33067268 None:intergenic 20.0%
!!! ATTTTCTTCGATTTTCATTT+TGG - chr3_2:33067455-33067474 Msa0403340:CDS 20.0%
!!! TAAAAAGGTGTTTAAATATG+GGG - chr3_2:33067913-33067932 Msa0403340:intron 20.0%
!! GAATAAACAAAATAAGGATA+AGG - chr3_2:33067999-33068018 Msa0403340:intron 20.0%
!! CAATATATCTTCAATAAGAT+TGG + chr3_2:33068317-33068336 None:intergenic 20.0%
!! GCTATATTTCTTATATGTTA+AGG - chr3_2:33068629-33068648 Msa0403340:intron 20.0%
!!! TCTCTAAAAAACTCTAATTT+GGG - chr3_2:33069105-33069124 Msa0403340:intron 20.0%
!!! TTTAACTTATTAGCCAATTA+TGG - chr3_2:33069422-33069441 Msa0403340:intron 20.0%
!! AGTAAAATTGGATCAATAAA+GGG + chr3_2:33069530-33069549 None:intergenic 20.0%
!! AAGTAAAATTGGATCAATAA+AGG + chr3_2:33069531-33069550 None:intergenic 20.0%
!!! TTATTGATCCAATTTTACTT+TGG - chr3_2:33069531-33069550 Msa0403340:intron 20.0%
!!! TAAAGTTGTTTTATTGTTCT+AGG - chr3_2:33069614-33069633 Msa0403340:intron 20.0%
!! GAATGAGAAAAATATACATT+TGG + chr3_2:33069665-33069684 None:intergenic 20.0%
!! TGACTTATCATAGTATAAAA+AGG + chr3_2:33069761-33069780 None:intergenic 20.0%
!! TTATACTATGATAAGTCATT+AGG - chr3_2:33069763-33069782 Msa0403340:intron 20.0%
!! AACAAAAATTGTTATAGTCA+AGG + chr3_2:33070433-33070452 None:intergenic 20.0%
!!! TACACTTCACTTATAATTTT+GGG + chr3_2:33070598-33070617 None:intergenic 20.0%
!! TTTATGATTTATCAATGCAA+AGG - chr3_2:33070886-33070905 Msa0403340:CDS 20.0%
!!! ATCAAATTAACATTTGTTAC+TGG + chr3_2:33071373-33071392 None:intergenic 20.0%
!!! ATGATAATAACTCTAAAAGA+CGG + chr3_2:33072192-33072211 None:intergenic 20.0%
!! AATTTAAATAGGGAACTAAA+GGG - chr3_2:33072363-33072382 Msa0403340:intron 20.0%
!!! AAATTTGAAACAAAATTACC+CGG + chr3_2:33072928-33072947 None:intergenic 20.0%
!!! AAAAAGTAGAGTTTTTCTAA+AGG - chr3_2:33073713-33073732 Msa0403340:intron 20.0%
!!! ATGACATTGGTATTAAATTT+TGG + chr3_2:33073847-33073866 None:intergenic 20.0%
!! AATGTCATTCGATTATAATT+CGG - chr3_2:33073859-33073878 Msa0403340:intron 20.0%
!! AATGACAATGGAATTATAAT+GGG + chr3_2:33074170-33074189 None:intergenic 20.0%
!! ATCATATTATAAACTTCCTT+CGG + chr3_2:33074229-33074248 None:intergenic 20.0%
!! TTTATAATATGATCAAGAGA+TGG - chr3_2:33074236-33074255 Msa0403340:intron 20.0%
!!! AAAATGAAAGTGCCAATATA+AGG + chr3_2:33067331-33067350 None:intergenic 25.0%
! TTCTGAATTATTGTGAGAAA+TGG + chr3_2:33067402-33067421 None:intergenic 25.0%
! AATAATTCAGAACCATTATC+TGG - chr3_2:33067410-33067429 Msa0403340:three_prime_UTR 25.0%
! TGTTTATATATATGAACGGA+GGG + chr3_2:33067879-33067898 None:intergenic 25.0%
! ATGTTTATATATATGAACGG+AGG + chr3_2:33067880-33067899 None:intergenic 25.0%
!!! AAATAAGGATAAGGGTATTT+AGG - chr3_2:33068008-33068027 Msa0403340:intron 25.0%
!!! AATAAGGATAAGGGTATTTA+GGG - chr3_2:33068009-33068028 Msa0403340:intron 25.0%
! AATAAATAAGGAAGAGAGAT+GGG + chr3_2:33068118-33068137 None:intergenic 25.0%
! TAATAAATAAGGAAGAGAGA+TGG + chr3_2:33068119-33068138 None:intergenic 25.0%
! TGGATATAATTTCTCATGTT+AGG + chr3_2:33068147-33068166 None:intergenic 25.0%
! TTGAATAAGATTACATTCGA+TGG - chr3_2:33068229-33068248 Msa0403340:intron 25.0%
! AATAAGAAGTGAGAAAAACA+AGG + chr3_2:33068472-33068491 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - chr3_2:33068471-33068490 Msa0403340:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr3_2:33068484-33068503 Msa0403340:intron 25.0%
! ATTTCTCATATGAAAACACA+GGG - chr3_2:33068600-33068619 Msa0403340:intron 25.0%
!!! GTTTTAGTTAAACATATGTG+TGG - chr3_2:33068888-33068907 Msa0403340:CDS 25.0%
!! CTCTCTAAAAAACTCTAATT+TGG - chr3_2:33069104-33069123 Msa0403340:intron 25.0%
!! CTCTAAAAAACTCTAATTTG+GGG - chr3_2:33069106-33069125 Msa0403340:intron 25.0%
! TCTAAAAAACTCTAATTTGG+GGG - chr3_2:33069107-33069126 Msa0403340:intron 25.0%
!! GCAAATGTTTTACTATTTTG+TGG - chr3_2:33069490-33069509 Msa0403340:CDS 25.0%
! ATCAATAAAGGGATTTCTTT+GGG + chr3_2:33069519-33069538 None:intergenic 25.0%
! AATTGTTATAGTCAAGGTAA+GGG + chr3_2:33070427-33070446 None:intergenic 25.0%
! AAATTGTTATAGTCAAGGTA+AGG + chr3_2:33070428-33070447 None:intergenic 25.0%
!!! TCAGACTTTACTTATTTTTC+CGG - chr3_2:33070452-33070471 Msa0403340:intron 25.0%
!! TTGATATTTTTCACCTAAAC+CGG + chr3_2:33070552-33070571 None:intergenic 25.0%
!! CTACACTTCACTTATAATTT+TGG + chr3_2:33070599-33070618 None:intergenic 25.0%
! ATGAATTGCAATGTTTATAC+AGG - chr3_2:33070642-33070661 Msa0403340:intron 25.0%
! TGAATTGCAATGTTTATACA+GGG - chr3_2:33070643-33070662 Msa0403340:intron 25.0%
! TATGGATTCAATTTAAGCTT+TGG + chr3_2:33070705-33070724 None:intergenic 25.0%
! AAGCTTAAATTGAATCCATA+TGG - chr3_2:33070705-33070724 Msa0403340:CDS 25.0%
! TTAAATTGAATCCATATGGT+TGG - chr3_2:33070709-33070728 Msa0403340:CDS 25.0%
!!! TCATATACTTTTTGAACAAC+AGG + chr3_2:33071027-33071046 None:intergenic 25.0%
!! GTTGTTCAAAAAGTATATGA+AGG - chr3_2:33071027-33071046 Msa0403340:CDS 25.0%
! AAACATATACTAGTCAATAC+AGG + chr3_2:33071151-33071170 None:intergenic 25.0%
! AAAGTAAAAAAACGTGTGTT+TGG - chr3_2:33071185-33071204 Msa0403340:intron 25.0%
! TTACTGGAAACTTAATTAGT+AGG + chr3_2:33071357-33071376 None:intergenic 25.0%
! CTTACTTTGATGTTTATATG+TGG + chr3_2:33071473-33071492 None:intergenic 25.0%
! ATTATCTTATTCTTATCGTC+AGG - chr3_2:33071561-33071580 Msa0403340:intron 25.0%
! TTATCTTATTCTTATCGTCA+GGG - chr3_2:33071562-33071581 Msa0403340:intron 25.0%
!! CTTTTGGTATAAGATTCATA+TGG + chr3_2:33071654-33071673 None:intergenic 25.0%
! AAATATAATGTTGCAGTCAT+TGG - chr3_2:33071810-33071829 Msa0403340:intron 25.0%
!! TTCAAGATGATCAAGAATTT+TGG - chr3_2:33072078-33072097 Msa0403340:intron 25.0%
! TAATCAAGTTAGCACAATTT+GGG + chr3_2:33072159-33072178 None:intergenic 25.0%
! TTAATCAAGTTAGCACAATT+TGG + chr3_2:33072160-33072179 None:intergenic 25.0%
! TTGAAATTATCATGAAGCTA+AGG - chr3_2:33072323-33072342 Msa0403340:intron 25.0%
!! CTTTAGTTCCCTATTTAAAT+TGG + chr3_2:33072364-33072383 None:intergenic 25.0%
! CAATTTAAATAGGGAACTAA+AGG - chr3_2:33072362-33072381 Msa0403340:intron 25.0%
! ATTTAAATAGGGAACTAAAG+GGG - chr3_2:33072364-33072383 Msa0403340:intron 25.0%
!!! GACACAAACACATTTTAATT+TGG - chr3_2:33072718-33072737 Msa0403340:intron 25.0%
! ATTATGTCACACTCATTATT+TGG - chr3_2:33072778-33072797 Msa0403340:intron 25.0%
! TTATGTCACACTCATTATTT+GGG - chr3_2:33072779-33072798 Msa0403340:intron 25.0%
! TATACTCAAACTACAACAAT+TGG + chr3_2:33072969-33072988 None:intergenic 25.0%
!!! ATTTTAATATGCTATAGTCG+AGG + chr3_2:33073206-33073225 None:intergenic 25.0%
!!! TTTTTTTTTGGGCTCTTTAT+TGG - chr3_2:33073424-33073443 Msa0403340:intron 25.0%
!! CGAATTTTATAATCCAAAGA+GGG + chr3_2:33073693-33073712 None:intergenic 25.0%
!! TCGAATTTTATAATCCAAAG+AGG + chr3_2:33073694-33073713 None:intergenic 25.0%
!!! GTGTTTTAACGTATTTTGAA+GGG - chr3_2:33073735-33073754 Msa0403340:intron 25.0%
! GAATTATAATCGAATGACAT+TGG + chr3_2:33073860-33073879 None:intergenic 25.0%
! ATGTCATTCGATTATAATTC+GGG - chr3_2:33073860-33073879 Msa0403340:intron 25.0%
! GAATGACAATGGAATTATAA+TGG + chr3_2:33074171-33074190 None:intergenic 25.0%
! TGCATTGAAATTTTGGACAA+AGG + chr3_2:33067295-33067314 None:intergenic 30.0%
! ATTCCTGTGCATTGAAATTT+TGG + chr3_2:33067302-33067321 None:intergenic 30.0%
AGGAATATGCTTCCTTATAT+TGG - chr3_2:33067316-33067335 Msa0403340:three_prime_UTR 30.0%
ATTATTGTGAGAAATGGTCA+AGG + chr3_2:33067396-33067415 None:intergenic 30.0%
TGAATAAACTCACCAGATAA+TGG + chr3_2:33067425-33067444 None:intergenic 30.0%
!!! TCATTTTGGTGTTAATCATC+CGG - chr3_2:33067469-33067488 Msa0403340:CDS 30.0%
AGAACTTAAATTCGATTCCA+GGG + chr3_2:33067569-33067588 None:intergenic 30.0%
! CGAATTTAAGTTCTCCTATT+TGG - chr3_2:33067575-33067594 Msa0403340:intron 30.0%
GTTAATGAACTCTACCAAAT+AGG + chr3_2:33067592-33067611 None:intergenic 30.0%
!! ATAAGGATAAGGGTATTTAG+GGG - chr3_2:33068010-33068029 Msa0403340:intron 30.0%
! GTTTGGTTTAAGCGAAATAT+GGG + chr3_2:33068184-33068203 None:intergenic 30.0%
! TGTTTGGTTTAAGCGAAATA+TGG + chr3_2:33068185-33068204 None:intergenic 30.0%
GTTAGTAAGATTACTTTCGA+TGG - chr3_2:33068285-33068304 Msa0403340:intron 30.0%
! TCAGCAAAGTTTTCATCAAA+TGG + chr3_2:33068446-33068465 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr3_2:33068497-33068516 Msa0403340:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr3_2:33068569-33068588 None:intergenic 30.0%
CATTTCTCATATGAAAACAC+AGG - chr3_2:33068599-33068618 Msa0403340:intron 30.0%
! ATCCAGAAATCATAACTTGT+GGG + chr3_2:33068825-33068844 None:intergenic 30.0%
TGAAAAATGTTCCACGATTA+AGG - chr3_2:33069296-33069315 Msa0403340:CDS 30.0%
GAAAAATGTTCCACGATTAA+GGG - chr3_2:33069297-33069316 Msa0403340:CDS 30.0%
TGTGTATTGTGTAGATACAT+AGG - chr3_2:33069446-33069465 Msa0403340:intron 30.0%
GATCAATAAAGGGATTTCTT+TGG + chr3_2:33069520-33069539 None:intergenic 30.0%
!!! TCAGCATTCTTTTTCGAAAA+TGG - chr3_2:33069584-33069603 Msa0403340:intron 30.0%
! TTGTTTTCTTTGCCAATCAA+AGG + chr3_2:33069695-33069714 None:intergenic 30.0%
! TGTGAGAGAATTCTTTGAAA+AGG - chr3_2:33069715-33069734 Msa0403340:CDS 30.0%
! GAATTCTTTGAAAAGGACTA+AGG - chr3_2:33069722-33069741 Msa0403340:intron 30.0%
CAATGAAAACACCAATTGTT+AGG - chr3_2:33070167-33070186 Msa0403340:intron 30.0%
!!! ATCTAATGGACTAGTCTTTT+GGG + chr3_2:33070218-33070237 None:intergenic 30.0%
! ACACTTTTATCTACTCGATA+TGG - chr3_2:33070270-33070289 Msa0403340:intron 30.0%
! CACTTTTATCTACTCGATAT+GGG - chr3_2:33070271-33070290 Msa0403340:intron 30.0%
TCCTAACAAGATGTCAAAAT+AGG - chr3_2:33070296-33070315 Msa0403340:intron 30.0%
CCTAACAAGATGTCAAAATA+GGG - chr3_2:33070297-33070316 Msa0403340:intron 30.0%
TCACATATACTCATGTTAGT+TGG - chr3_2:33070351-33070370 Msa0403340:intron 30.0%
!!! TGAGTGAGTTTTTTAAGACT+TGG + chr3_2:33070515-33070534 None:intergenic 30.0%
! ACTCAACAAGAATTTTGTAC+CGG - chr3_2:33070530-33070549 Msa0403340:intron 30.0%
TAATCGTCATCCATTGTTAA+TGG + chr3_2:33070669-33070688 None:intergenic 30.0%
!! GATTCAATTTAAGCTTTGGA+AGG + chr3_2:33070701-33070720 None:intergenic 30.0%
ATGTACATAGATATACCAGT+TGG - chr3_2:33070750-33070769 Msa0403340:CDS 30.0%
TGTACATAGATATACCAGTT+GGG - chr3_2:33070751-33070770 Msa0403340:CDS 30.0%
ATATTCTACTTTCAATGCAG+TGG - chr3_2:33070926-33070945 Msa0403340:CDS 30.0%
! AATGGATTTGAGCTAAACTT+TGG + chr3_2:33070964-33070983 None:intergenic 30.0%
! AGCTCAAATCCATTTTACAT+AGG - chr3_2:33070970-33070989 Msa0403340:CDS 30.0%
! TCAAATCCATTTTACATAGG+TGG - chr3_2:33070973-33070992 Msa0403340:CDS 30.0%
TCATATTCAGGATTTACTAC+CGG - chr3_2:33071000-33071019 Msa0403340:CDS 30.0%
TATGAAGGTAAACACTAACT+AGG - chr3_2:33071042-33071061 Msa0403340:CDS 30.0%
!! GGACTTCTAAAATCTTGTTT+CGG + chr3_2:33071099-33071118 None:intergenic 30.0%
TCACGTTTATATGCTTATAC+AGG + chr3_2:33071615-33071634 None:intergenic 30.0%
TATACCAAAAGAACTCTATG+AGG - chr3_2:33071663-33071682 Msa0403340:intron 30.0%
! TAATTTGCATCTAGCTATGA+AGG - chr3_2:33071753-33071772 Msa0403340:intron 30.0%
TCATTGGAGGAAAATTGTAA+GGG - chr3_2:33071826-33071845 Msa0403340:intron 30.0%
AGATTATGAAGCTTATTCTG+AGG - chr3_2:33071891-33071910 Msa0403340:intron 30.0%
AGCATTCATAGTAATGCATT+TGG - chr3_2:33071930-33071949 Msa0403340:intron 30.0%
GCATTCATAGTAATGCATTT+GGG - chr3_2:33071931-33071950 Msa0403340:intron 30.0%
AATTCTTGATCATCTTGAAC+AGG + chr3_2:33072077-33072096 None:intergenic 30.0%
ATAAATTAGAGCTTGGATGT+TGG + chr3_2:33072471-33072490 None:intergenic 30.0%
! AACATCCAAGCTCTAATTTA+TGG - chr3_2:33072470-33072489 Msa0403340:intron 30.0%
! ACATCCAAGCTCTAATTTAT+GGG - chr3_2:33072471-33072490 Msa0403340:intron 30.0%
AAAACATTGATGTGTCAAGT+AGG - chr3_2:33073134-33073153 Msa0403340:intron 30.0%
AAACATTGATGTGTCAAGTA+GGG - chr3_2:33073135-33073154 Msa0403340:intron 30.0%
TCTTACAAAACCAACTTGTA+AGG - chr3_2:33073246-33073265 Msa0403340:intron 30.0%
AAAATCTTCACCTTACAAGT+TGG + chr3_2:33073259-33073278 None:intergenic 30.0%
ATCTGGGTGAAATATTCAAA+AGG + chr3_2:33073498-33073517 None:intergenic 30.0%
TTGTAGATTTCTGTGAATCT+GGG + chr3_2:33073514-33073533 None:intergenic 30.0%
!!! GGTGTTTTAACGTATTTTGA+AGG - chr3_2:33073734-33073753 Msa0403340:intron 30.0%
!! TAACGTATTTTGAAGGGTTT+TGG - chr3_2:33073741-33073760 Msa0403340:intron 30.0%
TGTCATTCGATTATAATTCG+GGG - chr3_2:33073861-33073880 Msa0403340:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr3_2:33074095-33074114 Msa0403340:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr3_2:33074096-33074115 Msa0403340:intron 30.0%
TAATTCCATTGTCATTCTAC+AGG - chr3_2:33074174-33074193 Msa0403340:intron 30.0%
AATTCCATTGTCATTCTACA+GGG - chr3_2:33074175-33074194 Msa0403340:intron 30.0%
! CTAATTGTTCTTCGATTTGA+TGG - chr3_2:33074276-33074295 Msa0403340:intron 30.0%
TAAAGAATCCACAAAGACAT+AGG + chr3_2:33074333-33074352 None:intergenic 30.0%
CTTTATTCGTTTACCAATGA+TGG - chr3_2:33074348-33074367 Msa0403340:intron 30.0%
CAATTACCAATTTCCATCAT+TGG + chr3_2:33074364-33074383 None:intergenic 30.0%
!! GAAATTTTGGACAAAGGTAC+TGG + chr3_2:33067289-33067308 None:intergenic 35.0%
TGTCCAAAATTTCAATGCAC+AGG - chr3_2:33067296-33067315 Msa0403340:three_prime_UTR 35.0%
! GTCTGGAGTTGAATAAAGTT+TGG - chr3_2:33067528-33067547 Msa0403340:intron 35.0%
GAGAACTTAAATTCGATTCC+AGG + chr3_2:33067570-33067589 None:intergenic 35.0%
AGATGTAGCTGTATTGTGTT+AGG - chr3_2:33067663-33067682 Msa0403340:intron 35.0%
TTTAATGCTTCTGCCATTCA+TGG - chr3_2:33067689-33067708 Msa0403340:intron 35.0%
TCTGCCATTCATGGTTTATT+CGG - chr3_2:33067698-33067717 Msa0403340:intron 35.0%
TCTATTGTCAAGAAACTTCC+TGG - chr3_2:33067723-33067742 Msa0403340:intron 35.0%
!!! AAGAAACTTCCTGGTTTTGA+TGG - chr3_2:33067732-33067751 Msa0403340:intron 35.0%
!!! AGAAACTTCCTGGTTTTGAT+GGG - chr3_2:33067733-33067752 Msa0403340:intron 35.0%
TTCCATTCAAGCTTGAAACA+GGG - chr3_2:33067760-33067779 Msa0403340:intron 35.0%
! AAGGTGTTTAAATATGGGGA+TGG - chr3_2:33067917-33067936 Msa0403340:intron 35.0%
CAATCATTGCTGTATTGTTG+TGG - chr3_2:33067960-33067979 Msa0403340:intron 35.0%
ATCTGTGAAGAAGGAAAAAG+TGG - chr3_2:33068076-33068095 Msa0403340:intron 35.0%
GAGCACTCTAACATTATGTT+TGG + chr3_2:33068201-33068220 None:intergenic 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr3_2:33068564-33068583 Msa0403340:intron 35.0%
ATCCCACAAGTTATGATTTC+TGG - chr3_2:33068820-33068839 Msa0403340:CDS 35.0%
GATCCAGAAATCATAACTTG+TGG + chr3_2:33068826-33068845 None:intergenic 35.0%
! CTTTGTTATGTCCATTTGGT+CGG + chr3_2:33069214-33069233 None:intergenic 35.0%
! ATGCCTTTGTTATGTCCATT+TGG + chr3_2:33069218-33069237 None:intergenic 35.0%
ACACAATACACAGCCATAAT+TGG + chr3_2:33069438-33069457 None:intergenic 35.0%
ATTGTGTAGATACATAGGAG+TGG - chr3_2:33069451-33069470 Msa0403340:intron 35.0%
TTGTGTAGATACATAGGAGT+GGG - chr3_2:33069452-33069471 Msa0403340:intron 35.0%
CCAACGAACCAAAGTAAAAT+TGG + chr3_2:33069542-33069561 None:intergenic 35.0%
!! CCAATTTTACTTTGGTTCGT+TGG - chr3_2:33069539-33069558 Msa0403340:intron 35.0%
!! ATTTTACTTTGGTTCGTTGG+AGG - chr3_2:33069542-33069561 Msa0403340:intron 35.0%
! GTTCTAGGTTGTGATTAAGA+AGG - chr3_2:33069629-33069648 Msa0403340:CDS 35.0%
CATTCACATGTTCCTTTGAT+TGG - chr3_2:33069680-33069699 Msa0403340:CDS 35.0%
CCAATAAAGTGAATGTCGTA+CGG + chr3_2:33069868-33069887 None:intergenic 35.0%
TACCTGGATTAAGTGATAGT+GGG + chr3_2:33069897-33069916 None:intergenic 35.0%
TTACCTGGATTAAGTGATAG+TGG + chr3_2:33069898-33069917 None:intergenic 35.0%
AGAAAGGACTACTTATTACC+TGG + chr3_2:33069913-33069932 None:intergenic 35.0%
TGTTGTCCAACTCTCAATAT+TGG - chr3_2:33069932-33069951 Msa0403340:intron 35.0%
TCATAGCCAATATTGAGAGT+TGG + chr3_2:33069941-33069960 None:intergenic 35.0%
GGCTATGATGATAAGTCATT+AGG - chr3_2:33069953-33069972 Msa0403340:intron 35.0%
CAGTACGACATTCACTTTAT+TGG - chr3_2:33070083-33070102 Msa0403340:CDS 35.0%
TACCTGGATTAAGTGATAGT+GGG + chr3_2:33069897-33069916 None:intergenic 35.0%
TTACCTGGATTAAGTGATAG+TGG + chr3_2:33069898-33069917 None:intergenic 35.0%
! GTGTTTTCATTGAGAGTAGT+TGG + chr3_2:33070159-33070178 None:intergenic 35.0%
TGGGATTAAGTCCTAACAAT+TGG + chr3_2:33070181-33070200 None:intergenic 35.0%
!!! CATCTAATGGACTAGTCTTT+TGG + chr3_2:33070219-33070238 None:intergenic 35.0%
!!! CCCTATTTTGACATCTTGTT+AGG + chr3_2:33070300-33070319 None:intergenic 35.0%
AATGGAAACAACTCTAGTCA+TGG + chr3_2:33070395-33070414 None:intergenic 35.0%
! AGGTAAGGGTATATGTCAAA+TGG + chr3_2:33070413-33070432 None:intergenic 35.0%
!!! TTTTTAAGACTTGGTTCCCA+AGG + chr3_2:33070506-33070525 None:intergenic 35.0%
!!! CAAGAATTTTGTACCGGTTT+AGG - chr3_2:33070536-33070555 Msa0403340:intron 35.0%
TTATACAGGGCCATTAACAA+TGG - chr3_2:33070656-33070675 Msa0403340:intron 35.0%
AACATATGTGTCCAACCATA+TGG + chr3_2:33070723-33070742 None:intergenic 35.0%
TCTTACTCAGAAACACAAGA+AGG - chr3_2:33070783-33070802 Msa0403340:intron 35.0%
! AATCCATTTTACATAGGTGG+TGG - chr3_2:33070976-33070995 Msa0403340:CDS 35.0%
!! TACTTTTTGAACAACAGGAC+CGG + chr3_2:33071022-33071041 None:intergenic 35.0%
ACTAGGCGAAAATGCAATAT+CGG - chr3_2:33071059-33071078 Msa0403340:intron 35.0%
AGTCCTGAAAGTTGTGAAAT+TGG - chr3_2:33071114-33071133 Msa0403340:intron 35.0%
GTCCTGAAAGTTGTGAAATT+GGG - chr3_2:33071115-33071134 Msa0403340:intron 35.0%
CTAGTATATGTTTGCTCTAG+TGG - chr3_2:33071158-33071177 Msa0403340:intron 35.0%
!! GTTTTTGAAAAGCTAGCAGT+TGG + chr3_2:33071220-33071239 None:intergenic 35.0%
!!! TGCTAGCTTTTCAAAAACCA+CGG - chr3_2:33071222-33071241 Msa0403340:intron 35.0%
!!! TTAGACTTTTAGAGCGTGTT+TGG + chr3_2:33071291-33071310 None:intergenic 35.0%
TGAATTCTTGCTTGAATTGC+AGG - chr3_2:33071428-33071447 Msa0403340:intron 35.0%
! GTAACCTCATAGAGTTCTTT+TGG + chr3_2:33071670-33071689 None:intergenic 35.0%
TATAATGTTGCAGTCATTGG+AGG - chr3_2:33071813-33071832 Msa0403340:intron 35.0%
GTCATTGGAGGAAAATTGTA+AGG - chr3_2:33071825-33071844 Msa0403340:intron 35.0%
! GAGACACACTTTGTGTTATT+TGG + chr3_2:33071871-33071890 None:intergenic 35.0%
ATCGAACTAGCTGCAAAAAA+AGG + chr3_2:33071983-33072002 None:intergenic 35.0%
GTTACCCATAAATTAGAGCT+TGG + chr3_2:33072478-33072497 None:intergenic 35.0%
! CAGTGATATATAGGTTTGCT+TGG + chr3_2:33072521-33072540 None:intergenic 35.0%
TTGAAGCAGCAGTGATATAT+AGG + chr3_2:33072530-33072549 None:intergenic 35.0%
!!! GTTTTAGTTTCGTGTTCTAC+AGG + chr3_2:33072618-33072637 None:intergenic 35.0%
AACATTGATGTGTCAAGTAG+GGG - chr3_2:33073136-33073155 Msa0403340:intron 35.0%
TTGCTCAAGTTAAAGGACAA+TGG + chr3_2:33073319-33073338 None:intergenic 35.0%
!! CTTTATTGGCTTTGGATGAA+AGG - chr3_2:33073438-33073457 Msa0403340:intron 35.0%
CTTGTAGATTTCTGTGAATC+TGG + chr3_2:33073515-33073534 None:intergenic 35.0%
AGACCACTACTTAACATATG+TGG - chr3_2:33073543-33073562 Msa0403340:intron 35.0%
CACACGAGAAACTAATAGAA+TGG - chr3_2:33073809-33073828 Msa0403340:intron 35.0%
! GACTACTCATTTTCCATTCA+GGG + chr3_2:33073903-33073922 None:intergenic 35.0%
! TGACTACTCATTTTCCATTC+AGG + chr3_2:33073904-33073923 None:intergenic 35.0%
TTGCAATTTCTCTGCATTCA+GGG + chr3_2:33073934-33073953 None:intergenic 35.0%
TTTGCAATTTCTCTGCATTC+AGG + chr3_2:33073935-33073954 None:intergenic 35.0%
ACTAACAGAGTCTGAATTCA+AGG - chr3_2:33074035-33074054 Msa0403340:intron 35.0%
CATTTAAGCCTATGTCTTTG+TGG - chr3_2:33074322-33074341 Msa0403340:intron 35.0%
! CGTTTACCAATGATGGAAAT+TGG - chr3_2:33074355-33074374 Msa0403340:intron 35.0%
ATGGTCAAGGTTAAGGTTAG+TGG + chr3_2:33067383-33067402 None:intergenic 40.0%
GTGAGAAATGGTCAAGGTTA+AGG + chr3_2:33067390-33067409 None:intergenic 40.0%
GGATAAGAATTGTTCTACCC+TGG - chr3_2:33067549-33067568 Msa0403340:intron 40.0%
!! TTTCTGGTTGTGTAGTGTGA+TGG - chr3_2:33067635-33067654 Msa0403340:intron 40.0%
! TTCTGGTTGTGTAGTGTGAT+GGG - chr3_2:33067636-33067655 Msa0403340:intron 40.0%
CTGCCATTCATGGTTTATTC+GGG - chr3_2:33067699-33067718 Msa0403340:intron 40.0%
GAACCCGAATAAACCATGAA+TGG + chr3_2:33067705-33067724 None:intergenic 40.0%
!!! GAAACTTCCTGGTTTTGATG+GGG - chr3_2:33067734-33067753 Msa0403340:intron 40.0%
CTTCCATTCAAGCTTGAAAC+AGG - chr3_2:33067759-33067778 Msa0403340:intron 40.0%
TCTTCGCATATCTGTGAAGA+AGG - chr3_2:33068067-33068086 Msa0403340:intron 40.0%
TGTGAAGAAGGAAAAAGTGG+TGG - chr3_2:33068079-33068098 Msa0403340:intron 40.0%
GTGAAGAAGGAAAAAGTGGT+GGG - chr3_2:33068080-33068099 Msa0403340:intron 40.0%
AAGAGAGATGGGATTATGGT+GGG + chr3_2:33068107-33068126 None:intergenic 40.0%
AAGGAAGAGAGATGGGATTA+TGG + chr3_2:33068111-33068130 None:intergenic 40.0%
AAGCGAAATATGGGAGAAGT+TGG + chr3_2:33068175-33068194 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr3_2:33068507-33068526 Msa0403340:intron 40.0%
GTGTGGTTCAAGAAAGAGAA+AGG - chr3_2:33068905-33068924 Msa0403340:intron 40.0%
!! ACATGTTTGGTTCTCAAGAG+AGG - chr3_2:33068956-33068975 Msa0403340:intron 40.0%
!! CATGTTTGGTTCTCAAGAGA+GGG - chr3_2:33068957-33068976 Msa0403340:intron 40.0%
!! ATGTTTGGTTCTCAAGAGAG+GGG - chr3_2:33068958-33068977 Msa0403340:intron 40.0%
CGACCAAATGGACATAACAA+AGG - chr3_2:33069212-33069231 Msa0403340:intron 40.0%
CCGTACGACATTCACTTTAT+TGG - chr3_2:33069865-33069884 Msa0403340:CDS 40.0%
TTGAGAGTTGGACAACAGAA+AGG + chr3_2:33069929-33069948 None:intergenic 40.0%
TACGTCTTCATGGCAATGTT+AGG + chr3_2:33070038-33070057 None:intergenic 40.0%
TTAGGAGTTCTACGTCTTCA+TGG + chr3_2:33070048-33070067 None:intergenic 40.0%
AGAAAGGACTACGTATTACC+TGG + chr3_2:33070131-33070150 None:intergenic 40.0%
AGAGTAGTTGGACAACAGAA+AGG + chr3_2:33070147-33070166 None:intergenic 40.0%
!!! ATGGACTAGTCTTTTGGGTT+AGG + chr3_2:33070213-33070232 None:intergenic 40.0%
CATGAGACTCTCTCATCTAA+TGG + chr3_2:33070232-33070251 None:intergenic 40.0%
GGAAAAAGGACCTGGTAATT+TGG + chr3_2:33070485-33070504 None:intergenic 40.0%
! ATTACCAGGTCCTTTTTCCT+TGG - chr3_2:33070486-33070505 Msa0403340:intron 40.0%
! TTACCAGGTCCTTTTTCCTT+GGG - chr3_2:33070487-33070506 Msa0403340:intron 40.0%
ACAATGGATGACGATTACAG+TGG - chr3_2:33070672-33070691 Msa0403340:intron 40.0%
ATAGATATACCAGTTGGGAC+TGG - chr3_2:33070756-33070775 Msa0403340:CDS 40.0%
TAAGAAAAACCAGTCCCAAC+TGG + chr3_2:33070768-33070787 None:intergenic 40.0%
CTCCCAATTTCACAACTTTC+AGG + chr3_2:33071120-33071139 None:intergenic 40.0%
! AAACCACGGTAAAAGTGCAT+AGG - chr3_2:33071236-33071255 Msa0403340:intron 40.0%
! AACCACGGTAAAAGTGCATA+GGG - chr3_2:33071237-33071256 Msa0403340:intron 40.0%
! TTAGAGCGTGTTTGGTTTAG+CGG + chr3_2:33071283-33071302 None:intergenic 40.0%
! CGAATTATCTGGTTTACAGC+AGG + chr3_2:33072050-33072069 None:intergenic 40.0%
GAACAGGTTGTCGAATTATC+TGG + chr3_2:33072061-33072080 None:intergenic 40.0%
AAACGATGAAAATGTGCGCA+AGG - chr3_2:33072232-33072251 Msa0403340:CDS 40.0%
! TACAGGTGTTAGTTTCGTGT+TGG + chr3_2:33072601-33072620 None:intergenic 40.0%
CAAGATTGTGTACTCAGTTG+TGG + chr3_2:33072840-33072859 None:intergenic 40.0%
CACAACTGAGTACACAATCT+TGG - chr3_2:33072838-33072857 Msa0403340:intron 40.0%
ACATGAGCACACATGACAAA+TGG - chr3_2:33072874-33072893 Msa0403340:intron 40.0%
!! GCTTTGCAAAGGCATTTCAT+AGG + chr3_2:33073046-33073065 None:intergenic 40.0%
! CACGATTTTGTGCTTTGCAA+AGG + chr3_2:33073057-33073076 None:intergenic 40.0%
TTGCAAAGCACAAAATCGTG+AGG - chr3_2:33073057-33073076 Msa0403340:intron 40.0%
TGCAAAGCACAAAATCGTGA+GGG - chr3_2:33073058-33073077 Msa0403340:intron 40.0%
GACAATATCTCGTACACTTG+TGG - chr3_2:33073101-33073120 Msa0403340:intron 40.0%
TATGCTATAGTCGAGGCTAA+GGG + chr3_2:33073199-33073218 None:intergenic 40.0%
ATATGCTATAGTCGAGGCTA+AGG + chr3_2:33073200-33073219 None:intergenic 40.0%
! GACGAGTTTGCTCAAGTTAA+AGG + chr3_2:33073326-33073345 None:intergenic 40.0%
!! TTTGGGCTCTTTATTGGCTT+TGG - chr3_2:33073430-33073449 Msa0403340:intron 40.0%
CAGCCACATATGTTAAGTAG+TGG + chr3_2:33073549-33073568 None:intergenic 40.0%
CTTAACATATGTGGCTGTGA+AGG - chr3_2:33073552-33073571 Msa0403340:intron 40.0%
!! CGTATTTTGAAGGGTTTTGG+TGG - chr3_2:33073744-33073763 Msa0403340:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr3_2:33073887-33073906 Msa0403340:intron 40.0%
ACCAAGAGAGTCTACATTCA+GGG + chr3_2:33073963-33073982 None:intergenic 40.0%
AGACTCTCTTGGTCAATTTC+AGG - chr3_2:33073970-33073989 Msa0403340:CDS 40.0%
GACTCTCTTGGTCAATTTCA+GGG - chr3_2:33073971-33073990 Msa0403340:CDS 40.0%
TCAGGGACTAAAGTGACTAA+CGG - chr3_2:33073988-33074007 Msa0403340:intron 40.0%
CTTTAGTCCCTGAATAGGAA+AGG + chr3_2:33074137-33074156 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG + chr3_2:33073888-33073907 None:intergenic 40.0%
CAAGACATAGTTGCTAGGAA+TGG + chr3_2:33074412-33074431 None:intergenic 40.0%
TTCCTAGCAACTATGTCTTG+TGG - chr3_2:33074412-33074431 Msa0403340:intron 40.0%
TTCCACAAGACATAGTTGCT+AGG + chr3_2:33074417-33074436 None:intergenic 40.0%
CAGACAGAAATCCCGATTAC+CGG + chr3_2:33067513-33067532 None:intergenic 45.0%
CACCCTGTTTCAAGCTTGAA+TGG + chr3_2:33067765-33067784 None:intergenic 45.0%
GAAGAGAGATGGGATTATGG+TGG + chr3_2:33068108-33068127 None:intergenic 45.0%
TATGGGAGAAGTTGGAGAGA+TGG + chr3_2:33068167-33068186 None:intergenic 45.0%
! ATTTGGTCGGAGGATTTTGG+AGG + chr3_2:33069201-33069220 None:intergenic 45.0%
TCCAAAATCCTCCGACCAAA+TGG - chr3_2:33069200-33069219 Msa0403340:intron 45.0%
! TCCATTTGGTCGGAGGATTT+TGG + chr3_2:33069204-33069223 None:intergenic 45.0%
TGTTATGTCCATTTGGTCGG+AGG + chr3_2:33069211-33069230 None:intergenic 45.0%
TGTTCCACGATTAAGGGAGT+AGG - chr3_2:33069303-33069322 Msa0403340:CDS 45.0%
GTTCCACGATTAAGGGAGTA+GGG - chr3_2:33069304-33069323 Msa0403340:CDS 45.0%
ATACCCTACTCCCTTAATCG+TGG + chr3_2:33069310-33069329 None:intergenic 45.0%
AGATACATAGGAGTGGGAGA+AGG - chr3_2:33069458-33069477 Msa0403340:CDS 45.0%
CATTAGGTGATAGAGCCTCA+TGG - chr3_2:33069779-33069798 Msa0403340:intron 45.0%
GACGTGATACATATGCCATG+AGG + chr3_2:33069797-33069816 None:intergenic 45.0%
CACCCACTATCACTTAATCC+AGG - chr3_2:33069892-33069911 Msa0403340:intron 45.0%
CATTAGGTGATAGAGCCTCA+TGG - chr3_2:33069779-33069798 Msa0403340:intron 45.0%
GACGTGATACTTATGCCATG+AGG + chr3_2:33069987-33070006 None:intergenic 45.0%
CTGCTCTTCATGGCAATGTT+AGG + chr3_2:33070066-33070085 None:intergenic 45.0%
GAATGTCGTACTGCTCTTCA+TGG + chr3_2:33070076-33070095 None:intergenic 45.0%
CACCCACTATCACTTAATCC+AGG - chr3_2:33069892-33069911 Msa0403340:intron 45.0%
! TTGGGTTAGGCTCTGTTCAT+GGG + chr3_2:33070200-33070219 None:intergenic 45.0%
! TTTGGGTTAGGCTCTGTTCA+TGG + chr3_2:33070201-33070220 None:intergenic 45.0%
! GACTTGGTTCCCAAGGAAAA+AGG + chr3_2:33070499-33070518 None:intergenic 45.0%
ACTATAGCAGTGACACACTG+TGG - chr3_2:33070808-33070827 Msa0403340:intron 45.0%
CTATAGCAGTGACACACTGT+GGG - chr3_2:33070809-33070828 Msa0403340:intron 45.0%
GAGCCACCACCTATGTAAAA+TGG + chr3_2:33070982-33071001 None:intergenic 45.0%
! ATAGGTGGTGGCTCATATTC+AGG - chr3_2:33070988-33071007 Msa0403340:CDS 45.0%
AAGCTAGCAGTTGGAGAGTT+TGG + chr3_2:33071211-33071230 None:intergenic 45.0%
GCTTATACAGGTCAACAGCA+GGG + chr3_2:33071603-33071622 None:intergenic 45.0%
TGCTTATACAGGTCAACAGC+AGG + chr3_2:33071604-33071623 None:intergenic 45.0%
CAAACACAAACCAGTGCTGT+AGG - chr3_2:33072422-33072441 Msa0403340:intron 45.0%
GCGATAATATCCTACAGCAC+TGG + chr3_2:33072435-33072454 None:intergenic 45.0%
! AAATGGCGTGCATGGTTTGT+TGG - chr3_2:33072891-33072910 Msa0403340:intron 45.0%
TTTGTTGGAGGTCAAGTAGC+CGG - chr3_2:33072906-33072925 Msa0403340:intron 45.0%
GTACGAGATATTGTCCGCTT+TGG + chr3_2:33073096-33073115 None:intergenic 45.0%
CTCGTACACTTGTGGATTTG+AGG - chr3_2:33073109-33073128 Msa0403340:intron 45.0%
ATGCTATAGTCGAGGCTAAG+GGG + chr3_2:33073198-33073217 None:intergenic 45.0%
TCCCTGAATGTAGACTCTCT+TGG - chr3_2:33073959-33073978 Msa0403340:CDS 45.0%
GACCAAGAGAGTCTACATTC+AGG + chr3_2:33073964-33073983 None:intergenic 45.0%
TGACGACTCCTTTCCTATTC+AGG - chr3_2:33074126-33074145 Msa0403340:intron 45.0%
GACGACTCCTTTCCTATTCA+GGG - chr3_2:33074127-33074146 Msa0403340:intron 45.0%
AGCACCCTGTAGAATGACAA+TGG + chr3_2:33074182-33074201 None:intergenic 45.0%
ATTGTCATTCTACAGGGTGC+TGG - chr3_2:33074181-33074200 Msa0403340:intron 45.0%
GGCTCATACATTTAAGCCGA+AGG - chr3_2:33074210-33074229 Msa0403340:intron 45.0%
!!! AATTAAATTCTTTTTTTTTT+TGG - chr3_2:33073412-33073431 Msa0403340:intron 5.0%
!!! ATTAAATTCTTTTTTTTTTT+GGG - chr3_2:33073413-33073432 Msa0403340:intron 5.0%
TCATCCGGTTCTCAGCAGAA+AGG - chr3_2:33067484-33067503 Msa0403340:CDS 50.0%
CATCCGGTTCTCAGCAGAAA+GGG - chr3_2:33067485-33067504 Msa0403340:CDS 50.0%
CGGTAATCGGGATTTCTGTC+TGG - chr3_2:33067511-33067530 Msa0403340:CDS 50.0%
!! GGTTGTGTAGTGTGATGGGT+TGG - chr3_2:33067640-33067659 Msa0403340:intron 50.0%
GGAAGTTCCCCATCAAAACC+AGG + chr3_2:33067744-33067763 None:intergenic 50.0%
TGGATCCGTCCTTGATGTGA+GGG - chr3_2:33068840-33068859 Msa0403340:CDS 50.0%
!! TTTGGTTCTCAAGAGAGGGG+AGG - chr3_2:33068961-33068980 Msa0403340:intron 50.0%
TGGGGGAAGCAATAAACGAG+TGG - chr3_2:33069124-33069143 Msa0403340:intron 50.0%
!! GGATTTTGGAGGAGTGAGGA+GGG + chr3_2:33069190-33069209 None:intergenic 50.0%
!! AGGATTTTGGAGGAGTGAGG+AGG + chr3_2:33069191-33069210 None:intergenic 50.0%
! GCTGAAAGTGCAGAACATCC+TGG + chr3_2:33069569-33069588 None:intergenic 50.0%
CGGCTCTTCATGGCAATGTT+AGG + chr3_2:33069848-33069867 None:intergenic 50.0%
GAATGTCGTACGGCTCTTCA+TGG + chr3_2:33069858-33069877 None:intergenic 50.0%
! CTGGTAATTTGGAGTCTGGC+CGG + chr3_2:33070474-33070493 None:intergenic 50.0%
! GGACCTGGTAATTTGGAGTC+TGG + chr3_2:33070478-33070497 None:intergenic 50.0%
GTTCCCAAGGAAAAAGGACC+TGG + chr3_2:33070493-33070512 None:intergenic 50.0%
! GTCCCTATGCACTTTTACCG+TGG + chr3_2:33071242-33071261 None:intergenic 50.0%
! TGTTTGGTTTAGCGGCAAGC+AGG + chr3_2:33071275-33071294 None:intergenic 50.0%
GCAGGTGTAGTGATACAGAG+AGG + chr3_2:33072032-33072051 None:intergenic 50.0%
CAAGGCTCTTCATGTCAGAG+AGG - chr3_2:33072250-33072269 Msa0403340:intron 50.0%
TAGAGCTTGGATGTTGGCGT+TGG + chr3_2:33072465-33072484 None:intergenic 50.0%
CACATGACAAATGGCGTGCA+TGG - chr3_2:33072883-33072902 Msa0403340:intron 50.0%
TTGTTGGAGGTCAAGTAGCC+GGG - chr3_2:33072907-33072926 Msa0403340:intron 50.0%
GAGCCCTTTCTGCTGAGAAC+CGG + chr3_2:33067491-33067510 None:intergenic 55.0%
GTTCTCAGCAGAAAGGGCTC+CGG - chr3_2:33067491-33067510 Msa0403340:CDS 55.0%
GCAGAAAGGGCTCCGGTAAT+CGG - chr3_2:33067498-33067517 Msa0403340:CDS 55.0%
CAGAAAGGGCTCCGGTAATC+GGG - chr3_2:33067499-33067518 Msa0403340:CDS 55.0%
CTGGATCCGTCCTTGATGTG+AGG - chr3_2:33068839-33068858 Msa0403340:CDS 55.0%
GGATCCGTCCTTGATGTGAG+GGG - chr3_2:33068841-33068860 Msa0403340:CDS 55.0%
!! CGGAGGATTTTGGAGGAGTG+AGG + chr3_2:33069194-33069213 None:intergenic 55.0%
AGGAGTGGGAGAAGGAGCAA+AGG - chr3_2:33069466-33069485 Msa0403340:CDS 55.0%
! CTTTGGTTCGTTGGAGGTCC+AGG - chr3_2:33069548-33069567 Msa0403340:intron 55.0%
CGGCCAGACTCCAAATTACC+AGG - chr3_2:33070472-33070491 Msa0403340:intron 55.0%
TAGCAGTGACACACTGTGGG+TGG - chr3_2:33070812-33070831 Msa0403340:intron 55.0%
!! TGGCGTGCATGGTTTGTTGG+AGG - chr3_2:33072894-33072913 Msa0403340:intron 55.0%
GGCTCACGCAAGATCCAAAG+CGG - chr3_2:33073079-33073098 Msa0403340:intron 55.0%
AAGGGTCTTGCCATCGAGTG+TGG + chr3_2:33073172-33073191 None:intergenic 55.0%
GTCGAGGCTAAGGGGCTAAA+GGG + chr3_2:33073190-33073209 None:intergenic 55.0%
AGTCGAGGCTAAGGGGCTAA+AGG + chr3_2:33073191-33073210 None:intergenic 55.0%
ATTCTCTCGCGTGCCCTCTT+TGG - chr3_2:33073677-33073696 Msa0403340:intron 55.0%
!! TCTACAGGGTGCTGGACATG+TGG - chr3_2:33074189-33074208 Msa0403340:intron 55.0%
CCGTCCCCTCACATCAAGGA+CGG + chr3_2:33068848-33068867 None:intergenic 60.0%
CCGTCCTTGATGTGAGGGGA+CGG - chr3_2:33068845-33068864 Msa0403340:CDS 60.0%
CGTCCTTGATGTGAGGGGAC+GGG - chr3_2:33068846-33068865 Msa0403340:CDS 60.0%
TCTCCCGTCCCCTCACATCA+AGG + chr3_2:33068852-33068871 None:intergenic 60.0%
TTGATGTGAGGGGACGGGAG+AGG - chr3_2:33068851-33068870 Msa0403340:CDS 60.0%
TCAACCCACGCCACACTCGA+TGG - chr3_2:33073159-33073178 Msa0403340:intron 60.0%
CTTGCCATCGAGTGTGGCGT+GGG + chr3_2:33073166-33073185 None:intergenic 60.0%
TCTTGCCATCGAGTGTGGCG+TGG + chr3_2:33073167-33073186 None:intergenic 60.0%
! GAGGGCACGCGAGAGAATAG+TGG + chr3_2:33073675-33073694 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 33067217 33074510 33067217 ID=Msa0403340;Name=Msa0403340
chr3_2 mRNA 33067217 33074510 33067217 ID=Msa0403340-mRNA-1;Parent=Msa0403340;Name=Msa0403340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.92|0.85|0.92|0.76|0.64|14|231|428
chr3_2 exon 33067217 33067531 33067217 ID=Msa0403340-mRNA-1:exon:6552;Parent=Msa0403340-mRNA-1
chr3_2 exon 33068154 33068211 33068154 ID=Msa0403340-mRNA-1:exon:6551;Parent=Msa0403340-mRNA-1
chr3_2 exon 33068799 33068912 33068799 ID=Msa0403340-mRNA-1:exon:6550;Parent=Msa0403340-mRNA-1
chr3_2 exon 33069235 33069353 33069235 ID=Msa0403340-mRNA-1:exon:6549;Parent=Msa0403340-mRNA-1
chr3_2 exon 33069456 33069527 33069456 ID=Msa0403340-mRNA-1:exon:6548;Parent=Msa0403340-mRNA-1
chr3_2 exon 33069621 33069734 33069621 ID=Msa0403340-mRNA-1:exon:6547;Parent=Msa0403340-mRNA-1
chr3_2 exon 33069815 33069901 33069815 ID=Msa0403340-mRNA-1:exon:6546;Parent=Msa0403340-mRNA-1
chr3_2 exon 33070043 33070144 33070043 ID=Msa0403340-mRNA-1:exon:6545;Parent=Msa0403340-mRNA-1
chr3_2 exon 33070240 33070277 33070240 ID=Msa0403340-mRNA-1:exon:6544;Parent=Msa0403340-mRNA-1
chr3_2 exon 33070679 33070781 33070679 ID=Msa0403340-mRNA-1:exon:6543;Parent=Msa0403340-mRNA-1
chr3_2 exon 33070867 33071063 33070867 ID=Msa0403340-mRNA-1:exon:6542;Parent=Msa0403340-mRNA-1
chr3_2 exon 33072122 33072267 33072122 ID=Msa0403340-mRNA-1:exon:6541;Parent=Msa0403340-mRNA-1
chr3_2 exon 33073946 33073992 33073946 ID=Msa0403340-mRNA-1:exon:6540;Parent=Msa0403340-mRNA-1
chr3_2 exon 33074505 33074510 33074505 ID=Msa0403340-mRNA-1:exon:6539;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33074505 33074510 33074505 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33073946 33073992 33073946 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33072122 33072267 33072122 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33070867 33071063 33070867 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33070679 33070781 33070679 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33070240 33070277 33070240 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33070043 33070144 33070043 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33069815 33069901 33069815 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33069621 33069734 33069621 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33069456 33069527 33069456 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33069235 33069353 33069235 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33068799 33068912 33068799 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33068154 33068211 33068154 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 CDS 33067448 33067531 33067448 ID=Msa0403340-mRNA-1:cds;Parent=Msa0403340-mRNA-1
chr3_2 three_prime_UTR 33067217 33067447 33067217 ID=Msa0403340-mRNA-1:three_prime_utr;Parent=Msa0403340-mRNA-1
Gene Sequence

>Msa0403340

GGACAGAAACTTCCTGGTTTTGATGGGGAACTTCCATTCAAGCTTGAAACAGGATACATAGGAGTGGGAGAAGGAGCAAAGGTGCAAATGTTTTACTATTTTGTGGAGTCCCAAAGAAATCCCTTTATTGATCCAATTTTACTTTGGTTCGTTGGAGGTCCAGGATGTTCTGCACTTTCAGCATTCTTTTTCGAAAATGGGCCATTAACAATGGATGACGATTACAGTGGAATCCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATGTACATAGATATACCAGTTGGGACTGGTTTTTCTTACTCAGAAACACAAGAAGGCTACTATAGCAGTGACACACTGTGGGTGGATCATACATATTCTTTTTTACAAAAGTGGATTATTGATCATCCAAAGTTTAGCTCAAATCCATTTTACATAGGTGGTGGCTCATATTCAGGATTTACTACCGGTCCTGTTGTTCAAAAAGTATATGAAGGATACATAGCAAGACATAAGCCACATATAAACATCAAAGGTTATGTGCTTGCAAGCCCTGCTGTTGACCTGTATAAGCATATAAACGTGAAAGTTTTATATGCATACCATATGAATCTTATACCAAAAGAACTCTATGAGTCATTGGAGGAAAATTGTAAGGGTGATTATGTAAACATTGATCCAAATAACACAAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTAGTTCGATATATAAACGAACAACAAATTTTAGAACCTCTCTGTATCACTACACCTGCTGTAAACCAGATAATTCGACAACCTGTTCAAGATGATCAAGAATTTTGGTGTAGAAGTTATTATCATATTCTGGTCGACATATGGGCAAACGATGAAAATGTGCGCAAGGCTCTTCATGTCAGAGAGGGAACTAAAGGGGAGTTTTTGAGATGCAACAAGACTTTAGCATACACACAAACACAAACCAGTGCTGTAGGATATTATCGCAATCTCACCAACGCCAACATCCAAGCTCTAATTTATGGTTCTGATCTTGACTTTTCTGTACCACAACTGAGTACACAATCTTGGATCAAGTCATTCAACATGAGCACACATGACAAATGGCGTGCATGGTTTGTTGGAGGTCAAGTAGCCGGATTCACAGAAATCTACAAGATGAAAGAAGACCACTACTTAACATATGTGGCTGTGAAGGGTGCTGGACATGTGGCTCATACATTTAAGCCGAAGGAAGTTTATAATATGATCAAGAGATGGTTTTCATTTTCTCTTATCTAA
Protein sequence

>Msa0403340

GQKLPGFDGELPFKLETGYIGVGEGAKVQMFYYFVESQRNPFIDPILLWFVGGPGCSALSAFFFENGPLTMDDDYSGILPKLKLNPYGWTHMLNMMYIDIPVGTGFSYSETQEGYYSSDTLWVDHTYSFLQKWIIDHPKFSSNPFYIGGGSYSGFTTGPVVQKVYEGYIARHKPHINIKGYVLASPAVDLYKHINVKVLYAYHMNLIPKELYESLEENCKGDYVNIDPNNTKCVSDYEAYSELVRYINEQQILEPLCITTPAVNQIIRQPVQDDQEFWCRSYYHILVDIWANDENVRKALHVREGTKGEFLRCNKTLAYTQTQTSAVGYYRNLTNANIQALIYGSDLDFSVPQLSTQSWIKSFNMSTHDKWRAWFVGGQVAGFTEIYKMKEDHYLTYVAVKGAGHVAHTFKPKEVYNMIKRWFSFSLI*