Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608170 | XP_013456642.1 | 93.210 | 162 | 10 | 1 | 2 | 162 | 1 | 162 | 6.77e-102 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608170 | sp|A0A3G5BB24|NBS_NARPS | 47.436 | 156 | 82 | 0 | 2 | 157 | 1 | 156 | 6.52e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608170 | A0A072UNP4 | 93.210 | 162 | 10 | 1 | 2 | 162 | 1 | 162 | 3.23e-102 | 299 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043240 | Msa0608170 | -0.811767 | 5.937107e-51 | -8.615850e-47 |
| Msa0608170 | Msa0648090 | 0.985776 | 1.248184e-164 | -8.615850e-47 |
| Msa0608170 | Msa0691020 | 0.933504 | 1.697211e-95 | -8.615850e-47 |
| Msa0608170 | Msa0837990 | 0.802620 | 5.146524e-49 | -8.615850e-47 |
| Msa0608170 | Msa0946120 | 0.809267 | 2.058516e-50 | -8.615850e-47 |
| Msa0608170 | Msa1037000 | 0.801825 | 7.501686e-49 | -8.615850e-47 |
| Msa0608170 | Msa1040120 | 0.801343 | 9.416475e-49 | -8.615850e-47 |
| Msa0608170 | Msa1113200 | 0.805576 | 1.248923e-49 | -8.615850e-47 |
| Msa0608170 | Msa1115330 | 0.809012 | 2.334636e-50 | -8.615850e-47 |
| Msa0608170 | Msa1221570 | -0.803993 | 2.673956e-49 | -8.615850e-47 |
| Msa0608170 | Msa1319440 | 0.804128 | 2.506045e-49 | -8.615850e-47 |
| Msa0403340 | Msa0608170 | 0.806509 | 7.947378e-50 | -8.615850e-47 |
| Msa0423360 | Msa0608170 | -0.805757 | 1.144146e-49 | -8.615850e-47 |
| Msa0269360 | Msa0608170 | 0.801824 | 7.501788e-49 | -8.615850e-47 |
| Msa0304740 | Msa0608170 | 0.817863 | 2.644022e-52 | -8.615850e-47 |
| Msa0331590 | Msa0608170 | 0.809132 | 2.200744e-50 | -8.615850e-47 |
| Msa0357090 | Msa0608170 | 0.804928 | 1.706782e-49 | -8.615850e-47 |
| Msa0357100 | Msa0608170 | 0.864940 | 8.469507e-65 | -8.615850e-47 |
| Msa0569290 | Msa0608170 | 0.808661 | 2.775896e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0608170 | MtrunA17_Chr4g0039941 | 93.210 | 162 | 10 | 1 | 2 | 162 | 1 | 162 | 6.23e-106 | 299 |
| Msa0608170 | MtrunA17_Chr4g0039921 | 77.640 | 161 | 36 | 0 | 2 | 162 | 1 | 161 | 5.28e-89 | 256 |
| Msa0608170 | MtrunA17_Chr3g0100201 | 30.952 | 126 | 80 | 2 | 2 | 124 | 1 | 122 | 1.76e-15 | 69.3 |
| Msa0608170 | MtrunA17_Chr3g0100191 | 33.333 | 102 | 66 | 2 | 28 | 128 | 26 | 126 | 3.66e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTACCCGTAATATATTT+TGG | 0.099272 | 4_2:-55195333 | None:intergenic |
| GAAGGTGGATACTTAGAATT+TGG | 0.200939 | 4_2:+55198082 | Msa0608170:CDS |
| ATAGGTTATAAAATGATTAT+TGG | 0.208282 | 4_2:+55198443 | Msa0608170:three_prime_UTR |
| TGAGCCATTGGCTAACATTA+TGG | 0.279776 | 4_2:+55198228 | Msa0608170:CDS |
| GTTTCTGTTGAGGTAATTCT+TGG | 0.289058 | 4_2:-55198257 | None:intergenic |
| CTCTTTGGCACCATTGGTAT+TGG | 0.293635 | 4_2:+55195478 | Msa0608170:CDS |
| TAGGTTATAAAATGATTATT+GGG | 0.324243 | 4_2:+55198444 | Msa0608170:three_prime_UTR |
| AGATCCCATGCTTCATTTGC+TGG | 0.334877 | 4_2:-55195457 | None:intergenic |
| AATTTCTCTTTGTAACCAGC+TGG | 0.370226 | 4_2:-55198013 | None:intergenic |
| AATAATCCCAAAATATATTA+CGG | 0.384290 | 4_2:+55195326 | Msa0608170:five_prime_UTR |
| ATTTGTTTCCATTGAGCCAT+TGG | 0.398190 | 4_2:+55198216 | Msa0608170:CDS |
| TGCAATCTTGAGAAACATAT+AGG | 0.420731 | 4_2:+55198425 | Msa0608170:three_prime_UTR |
| TCTTTGTAACCAGCTGGGCC+AGG | 0.438011 | 4_2:-55198007 | None:intergenic |
| TGGGATCTCTTTGGCACCAT+TGG | 0.444724 | 4_2:+55195472 | Msa0608170:CDS |
| AATGAAGCATGGGATCTCTT+TGG | 0.446830 | 4_2:+55195463 | Msa0608170:CDS |
| ATAATCCCAAAATATATTAC+GGG | 0.455945 | 4_2:+55195327 | Msa0608170:five_prime_UTR |
| TTGTAGCCTTGTTTCTGTTG+AGG | 0.460261 | 4_2:-55198267 | None:intergenic |
| ATGCTTCATTTGCTGGCACA+TGG | 0.468256 | 4_2:-55195450 | None:intergenic |
| GTGGAGCTAGTTGAAGGAGA+TGG | 0.469970 | 4_2:+55195541 | Msa0608170:CDS |
| CAGAAGGTGGAGCTAGTTGA+AGG | 0.471435 | 4_2:+55195535 | Msa0608170:CDS |
| GTTGAAGGAGATGGAGGAGT+TGG | 0.496688 | 4_2:+55195550 | Msa0608170:CDS |
| AATGTTAGCCAATGGCTCAA+TGG | 0.500199 | 4_2:-55198224 | None:intergenic |
| GAGCTAGTTGAAGGAGATGG+AGG | 0.508883 | 4_2:+55195544 | Msa0608170:CDS |
| GCCTCAATTGTTTCAGAAGG+TGG | 0.512921 | 4_2:+55195522 | Msa0608170:CDS |
| AAAGAAGCAGAGGTAGTTGA+AGG | 0.515702 | 4_2:+55198064 | Msa0608170:CDS |
| ACAGGTACACCTGGCCCAGC+TGG | 0.517233 | 4_2:+55197998 | Msa0608170:intron |
| AATGGAAACAAATGAGGCAT+TGG | 0.521286 | 4_2:-55198206 | None:intergenic |
| TGGAAAAGAAAGATGATGTC+TGG | 0.523137 | 4_2:+55195403 | Msa0608170:exon |
| ATTTCTCTTTGTAACCAGCT+GGG | 0.558097 | 4_2:-55198012 | None:intergenic |
| CTCAAACTCACATTCACTCC+AGG | 0.561646 | 4_2:+55195580 | Msa0608170:CDS |
| GATGCCTCAATTGTTTCAGA+AGG | 0.566397 | 4_2:+55195519 | Msa0608170:CDS |
| CTACCTCTGCTTCTTTGATG+CGG | 0.573581 | 4_2:-55198057 | None:intergenic |
| ATGTGCCAGCAAATGAAGCA+TGG | 0.580036 | 4_2:+55195452 | Msa0608170:CDS |
| TCTAATCAAGCAAATGCACT+AGG | 0.583851 | 4_2:-55198472 | None:intergenic |
| TCCACCTTCTGAAACAATTG+AGG | 0.585010 | 4_2:-55195523 | None:intergenic |
| TGTGCCAGCAAATGAAGCAT+GGG | 0.591233 | 4_2:+55195453 | Msa0608170:CDS |
| GGAGTTTGAACAGGTACACC+TGG | 0.591936 | 4_2:+55197989 | Msa0608170:intron |
| TGGCTCAATGGAAACAAATG+AGG | 0.595922 | 4_2:-55198212 | None:intergenic |
| GAAGCAGAGGTAGTTGAAGG+TGG | 0.597763 | 4_2:+55198067 | Msa0608170:CDS |
| ACTTCCATAATGTTAGCCAA+TGG | 0.636775 | 4_2:-55198232 | None:intergenic |
| AAACCGCATCAAAGAAGCAG+AGG | 0.668061 | 4_2:+55198054 | Msa0608170:CDS |
| TGGTATTGGAAAACTCGTTG+AGG | 0.676186 | 4_2:+55195492 | Msa0608170:CDS |
| TCATCTGAGAAATAATACAA+AGG | 0.684644 | 4_2:-55198400 | None:intergenic |
| GAATTACCTCAACAGAAACA+AGG | 0.699162 | 4_2:+55198261 | Msa0608170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAAAAAAAAAAATAAAAG+GGG | - | chr4_2:55197675-55197694 | None:intergenic | 10.0% |
| !! | CACTTAAAAAAAAAAATAAA+AGG | - | chr4_2:55197677-55197696 | None:intergenic | 10.0% |
| !!! | CTTTTATTTTTTTTTTTAAG+TGG | + | chr4_2:55197675-55197694 | Msa0608170:intron | 10.0% |
| !!! | TTATTAATATATTTTCTTTG+GGG | - | chr4_2:55197850-55197869 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTTTTTTTTTTAT+AGG | - | chr4_2:55197936-55197955 | None:intergenic | 10.0% |
| !! | AATAATCCCAAAATATATTA+CGG | + | chr4_2:55195326-55195345 | Msa0608170:five_prime_UTR | 15.0% |
| !! | CACATGATTATTATATATTT+CGG | + | chr4_2:55195937-55195956 | Msa0608170:intron | 15.0% |
| !! | ACATGATTATTATATATTTC+GGG | + | chr4_2:55195938-55195957 | Msa0608170:intron | 15.0% |
| !! | TATATAAGTAGTTTCATATT+TGG | + | chr4_2:55196653-55196672 | Msa0608170:intron | 15.0% |
| !! | AAAATCAACAATTCTAAATT+AGG | + | chr4_2:55197298-55197317 | Msa0608170:intron | 15.0% |
| !! | AAATCAACAATTCTAAATTA+GGG | + | chr4_2:55197299-55197318 | Msa0608170:intron | 15.0% |
| !!! | TTTTTTTTAAGTGGAAAATA+TGG | + | chr4_2:55197684-55197703 | Msa0608170:intron | 15.0% |
| !! | AATACTAAATACAAATCTAA+AGG | + | chr4_2:55197887-55197906 | Msa0608170:intron | 15.0% |
| !!! | TTTTTTTTTTTTTATAGGAG+GGG | - | chr4_2:55197931-55197950 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTATAGGA+GGG | - | chr4_2:55197932-55197951 | None:intergenic | 15.0% |
| !!! | TGTTTTTTTTTTTTTATAGG+AGG | - | chr4_2:55197933-55197952 | None:intergenic | 15.0% |
| !! | ATAGGTTATAAAATGATTAT+TGG | + | chr4_2:55198443-55198462 | Msa0608170:three_prime_UTR | 15.0% |
| !! | TAGGTTATAAAATGATTATT+GGG | + | chr4_2:55198444-55198463 | Msa0608170:three_prime_UTR | 15.0% |
| !! | ATAATCCCAAAATATATTAC+GGG | + | chr4_2:55195327-55195346 | Msa0608170:five_prime_UTR | 20.0% |
| !! | TAAATAATATATGATTGACC+TGG | - | chr4_2:55195601-55195620 | None:intergenic | 20.0% |
| !! | GGTCAATCATATATTATTTA+TGG | + | chr4_2:55195601-55195620 | Msa0608170:intron | 20.0% |
| !!! | TTTTCATATATAGTTGTGTT+AGG | - | chr4_2:55195841-55195860 | None:intergenic | 20.0% |
| !! | AGAAAGTTATGTATATGTAT+AGG | - | chr4_2:55195864-55195883 | None:intergenic | 20.0% |
| !! | TATATATTTCGGGAAAAATT+TGG | + | chr4_2:55195948-55195967 | Msa0608170:intron | 20.0% |
| !! | AAATTCAATAAGTGTATGTT+TGG | + | chr4_2:55196140-55196159 | Msa0608170:intron | 20.0% |
| !!! | AATCACTTTGTAGTATTTTT+GGG | - | chr4_2:55197038-55197057 | None:intergenic | 20.0% |
| !!! | TAATCACTTTGTAGTATTTT+TGG | - | chr4_2:55197039-55197058 | None:intergenic | 20.0% |
| !!! | CATTATTCAAGTTATTACAT+TGG | + | chr4_2:55197204-55197223 | Msa0608170:intron | 20.0% |
| !! | AACAATTATAAATTGCAGTT+TGG | + | chr4_2:55197349-55197368 | Msa0608170:intron | 20.0% |
| !!! | CTCTTTTGAGTTTTAAAATG+TGG | - | chr4_2:55195372-55195391 | None:intergenic | 25.0% |
| !!! | TCAAAAGAGTACATTTTTTG+TGG | + | chr4_2:55195383-55195402 | Msa0608170:five_prime_UTR | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr4_2:55195672-55195691 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr4_2:55195671-55195690 | Msa0608170:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr4_2:55195684-55195703 | Msa0608170:intron | 25.0% |
| ! | TTCTTTACAATCACGTATAA+AGG | + | chr4_2:55196561-55196580 | Msa0608170:intron | 25.0% |
| ! | ATGAAACTAATAGCATGATT+TGG | - | chr4_2:55196706-55196725 | None:intergenic | 25.0% |
| ! | ACTTGAATAATGAGAATGTA+AGG | - | chr4_2:55197196-55197215 | None:intergenic | 25.0% |
| ! | CTGAAATTAACAATTCTCTT+TGG | + | chr4_2:55197262-55197281 | Msa0608170:intron | 25.0% |
| ! | AACAATTCTAAATTAGGGTT+TGG | + | chr4_2:55197304-55197323 | Msa0608170:intron | 25.0% |
| ! | ACAATTCTAAATTAGGGTTT+GGG | + | chr4_2:55197305-55197324 | Msa0608170:intron | 25.0% |
| !!! | GATGCTTGTTATTTGTTAAT+GGG | - | chr4_2:55197402-55197421 | None:intergenic | 25.0% |
| !!! | TGATGCTTGTTATTTGTTAA+TGG | - | chr4_2:55197403-55197422 | None:intergenic | 25.0% |
| ! | GAAAAAACATGAAACAAACA+TGG | + | chr4_2:55197455-55197474 | Msa0608170:intron | 25.0% |
| !!! | GTAACATTGATTGTTTTGAT+TGG | + | chr4_2:55197968-55197987 | Msa0608170:intron | 25.0% |
| !!! | CGTTTTGAAATAATAGAGAA+AGG | + | chr4_2:55198124-55198143 | Msa0608170:CDS | 25.0% |
| ! | TCATCTGAGAAATAATACAA+AGG | - | chr4_2:55198403-55198422 | None:intergenic | 25.0% |
| ! | TGCTACCCGTAATATATTTT+GGG | - | chr4_2:55195335-55195354 | None:intergenic | 30.0% |
| ! | TTGCTACCCGTAATATATTT+TGG | - | chr4_2:55195336-55195355 | None:intergenic | 30.0% |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr4_2:55195646-55195665 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr4_2:55195697-55195716 | Msa0608170:intron | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr4_2:55195769-55195788 | None:intergenic | 30.0% |
| CTAAAAACTGAGTCAATTGA+TGG | - | chr4_2:55195905-55195924 | None:intergenic | 30.0% | |
| TACCAACATGTCTATACAAA+TGG | + | chr4_2:55196034-55196053 | Msa0608170:intron | 30.0% | |
| AACATGTCTATACAAATGGA+GGG | + | chr4_2:55196038-55196057 | Msa0608170:intron | 30.0% | |
| AATCTAGAGATTCATGTGTA+TGG | + | chr4_2:55196075-55196094 | Msa0608170:intron | 30.0% | |
| ! | TGAGCAGAAAAAGAAACTTT+TGG | + | chr4_2:55196117-55196136 | Msa0608170:intron | 30.0% |
| ! | GTAGCTCAAATTTGTTCAAA+CGG | + | chr4_2:55196298-55196317 | Msa0608170:intron | 30.0% |
| ! | CATTTTCTCTCATTTATGCT+TGG | - | chr4_2:55196353-55196372 | None:intergenic | 30.0% |
| GAGAGAAACATAAATCATGA+AGG | + | chr4_2:55196878-55196897 | Msa0608170:intron | 30.0% | |
| !!! | CATTTTTTAGCTTGTCATGT+AGG | - | chr4_2:55196955-55196974 | None:intergenic | 30.0% |
| CTTAGGATTATTACTTCAAG+AGG | - | chr4_2:55197169-55197188 | None:intergenic | 30.0% | |
| TGAGAATGTAAGGATTTCTT+AGG | - | chr4_2:55197186-55197205 | None:intergenic | 30.0% | |
| GGTTTGGGAAATCAAAATTA+GGG | + | chr4_2:55197320-55197339 | Msa0608170:intron | 30.0% | |
| AAAACATGAAACAAACATGG+AGG | + | chr4_2:55197458-55197477 | Msa0608170:intron | 30.0% | |
| TAAGTGGAAAATATGGCTAT+TGG | + | chr4_2:55197691-55197710 | Msa0608170:intron | 30.0% | |
| AAGTGGAAAATATGGCTATT+GGG | + | chr4_2:55197692-55197711 | Msa0608170:intron | 30.0% | |
| ! | GCGGTTTTCATTATCAATTT+TGG | - | chr4_2:55198041-55198060 | None:intergenic | 30.0% |
| TGCAATCTTGAGAAACATAT+AGG | + | chr4_2:55198425-55198444 | Msa0608170:three_prime_UTR | 30.0% | |
| TGGAAAAGAAAGATGATGTC+TGG | + | chr4_2:55195403-55195422 | Msa0608170:exon | 35.0% | |
| ! | AACGAGTTTTCCAATACCAA+TGG | - | chr4_2:55195491-55195510 | None:intergenic | 35.0% |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr4_2:55195764-55195783 | Msa0608170:intron | 35.0% | |
| CTCCATTTGTATAGACATGT+TGG | - | chr4_2:55196039-55196058 | None:intergenic | 35.0% | |
| CAACATGTCTATACAAATGG+AGG | + | chr4_2:55196037-55196056 | Msa0608170:intron | 35.0% | |
| ! | AACTTCTAGTTACAAGTCGT+GGG | - | chr4_2:55196246-55196265 | None:intergenic | 35.0% |
| GAGCTACAAATCACTTTAGA+AGG | - | chr4_2:55196285-55196304 | None:intergenic | 35.0% | |
| AGCGTATAGCTATAAAAGAG+TGG | + | chr4_2:55196424-55196443 | Msa0608170:intron | 35.0% | |
| ATAAAAGAGTGGTCTCGATT+AGG | + | chr4_2:55196435-55196454 | Msa0608170:intron | 35.0% | |
| ! | TTGCGATTAAATTTTTGCCC+AGG | - | chr4_2:55196496-55196515 | None:intergenic | 35.0% |
| TGCTAGCATGAAACTATATC+AGG | - | chr4_2:55196831-55196850 | None:intergenic | 35.0% | |
| !! | TTGTCATGTAGGTGTTTTTG+GGG | - | chr4_2:55196944-55196963 | None:intergenic | 35.0% |
| ! | CTTGTCATGTAGGTGTTTTT+GGG | - | chr4_2:55196945-55196964 | None:intergenic | 35.0% |
| GGGTTTGGGAAATCAAAATT+AGG | + | chr4_2:55197319-55197338 | Msa0608170:intron | 35.0% | |
| AAGAGGAGAAGGAATGAAAA+TGG | + | chr4_2:55197486-55197505 | Msa0608170:intron | 35.0% | |
| AAATAAAAGGGGCAGAATTG+AGG | - | chr4_2:55197664-55197683 | None:intergenic | 35.0% | |
| TCTGCTTCTACTTTCTATGT+TGG | - | chr4_2:55197726-55197745 | None:intergenic | 35.0% | |
| !!! | GTTTTGATTGGAGTTTGAAC+AGG | + | chr4_2:55197980-55197999 | Msa0608170:intron | 35.0% |
| ATTTCTCTTTGTAACCAGCT+GGG | - | chr4_2:55198015-55198034 | None:intergenic | 35.0% | |
| AATTTCTCTTTGTAACCAGC+TGG | - | chr4_2:55198016-55198035 | None:intergenic | 35.0% | |
| GAAGGTGGATACTTAGAATT+TGG | + | chr4_2:55198082-55198101 | Msa0608170:CDS | 35.0% | |
| AATGGAAACAAATGAGGCAT+TGG | - | chr4_2:55198209-55198228 | None:intergenic | 35.0% | |
| ATTTGTTTCCATTGAGCCAT+TGG | + | chr4_2:55198216-55198235 | Msa0608170:CDS | 35.0% | |
| ACTTCCATAATGTTAGCCAA+TGG | - | chr4_2:55198235-55198254 | None:intergenic | 35.0% | |
| GTTTCTGTTGAGGTAATTCT+TGG | - | chr4_2:55198260-55198279 | None:intergenic | 35.0% | |
| GAATTACCTCAACAGAAACA+AGG | + | chr4_2:55198261-55198280 | Msa0608170:CDS | 35.0% | |
| TCTAATCAAGCAAATGCACT+AGG | - | chr4_2:55198475-55198494 | None:intergenic | 35.0% | |
| AATGAAGCATGGGATCTCTT+TGG | + | chr4_2:55195463-55195482 | Msa0608170:CDS | 40.0% | |
| ! | TGGTATTGGAAAACTCGTTG+AGG | + | chr4_2:55195492-55195511 | Msa0608170:CDS | 40.0% |
| GATGCCTCAATTGTTTCAGA+AGG | + | chr4_2:55195519-55195538 | Msa0608170:CDS | 40.0% | |
| !! | TCCACCTTCTGAAACAATTG+AGG | - | chr4_2:55195526-55195545 | None:intergenic | 40.0% |
| ! | ACTTCTAGTTACAAGTCGTG+GGG | - | chr4_2:55196245-55196264 | None:intergenic | 40.0% |
| ! | CAACTTCTAGTTACAAGTCG+TGG | - | chr4_2:55196247-55196266 | None:intergenic | 40.0% |
| !!! | TGTCATGTAGGTGTTTTTGG+GGG | - | chr4_2:55196943-55196962 | None:intergenic | 40.0% |
| ! | GCTTGTCATGTAGGTGTTTT+TGG | - | chr4_2:55196946-55196965 | None:intergenic | 40.0% |
| CAGAATTGAGGCAAATGTTC+AGG | - | chr4_2:55197652-55197671 | None:intergenic | 40.0% | |
| GAAAATATGGCTATTGGGCT+GGG | + | chr4_2:55197697-55197716 | Msa0608170:intron | 40.0% | |
| AAAGAAGCAGAGGTAGTTGA+AGG | + | chr4_2:55198064-55198083 | Msa0608170:CDS | 40.0% | |
| TGGCTCAATGGAAACAAATG+AGG | - | chr4_2:55198215-55198234 | None:intergenic | 40.0% | |
| AATGTTAGCCAATGGCTCAA+TGG | - | chr4_2:55198227-55198246 | None:intergenic | 40.0% | |
| ! | TGAGCCATTGGCTAACATTA+TGG | + | chr4_2:55198228-55198247 | Msa0608170:CDS | 40.0% |
| !! | TTGTAGCCTTGTTTCTGTTG+AGG | - | chr4_2:55198270-55198289 | None:intergenic | 40.0% |
| ! | ATGCTTCATTTGCTGGCACA+TGG | - | chr4_2:55195453-55195472 | None:intergenic | 45.0% |
| ATGTGCCAGCAAATGAAGCA+TGG | + | chr4_2:55195452-55195471 | Msa0608170:CDS | 45.0% | |
| TGTGCCAGCAAATGAAGCAT+GGG | + | chr4_2:55195453-55195472 | Msa0608170:CDS | 45.0% | |
| AGATCCCATGCTTCATTTGC+TGG | - | chr4_2:55195460-55195479 | None:intergenic | 45.0% | |
| CTCTTTGGCACCATTGGTAT+TGG | + | chr4_2:55195478-55195497 | Msa0608170:CDS | 45.0% | |
| GCCTCAATTGTTTCAGAAGG+TGG | + | chr4_2:55195522-55195541 | Msa0608170:CDS | 45.0% | |
| CTCAAACTCACATTCACTCC+AGG | + | chr4_2:55195580-55195599 | Msa0608170:CDS | 45.0% | |
| CCAGGAATTTCTTAGAGCCT+GGG | + | chr4_2:55196476-55196495 | Msa0608170:intron | 45.0% | |
| !!! | GTCATGTAGGTGTTTTTGGG+GGG | - | chr4_2:55196942-55196961 | None:intergenic | 45.0% |
| TGGGCTGTGATGCTTTGATT+TGG | - | chr4_2:55196995-55197014 | None:intergenic | 45.0% | |
| GCCTGTTGGTGTGTTTGTTT+GGG | - | chr4_2:55197014-55197033 | None:intergenic | 45.0% | |
| !!! | TAGTATTTTTGGGCGCCTGT+TGG | - | chr4_2:55197028-55197047 | None:intergenic | 45.0% |
| CAAACATGGAGGAAGTGAAG+AGG | + | chr4_2:55197469-55197488 | Msa0608170:intron | 45.0% | |
| ! | AAGAGGCGCAAATTGAGAGA+GGG | + | chr4_2:55197529-55197548 | Msa0608170:intron | 45.0% |
| AGAGATTGAGTCACTGAGAG+AGG | + | chr4_2:55197573-55197592 | Msa0608170:intron | 45.0% | |
| GAGATTGAGTCACTGAGAGA+GGG | + | chr4_2:55197574-55197593 | Msa0608170:intron | 45.0% | |
| GGAGAGTCACGATAAGTTAG+AGG | + | chr4_2:55197595-55197614 | Msa0608170:intron | 45.0% | |
| GAGTCACGATAAGTTAGAGG+AGG | + | chr4_2:55197598-55197617 | Msa0608170:intron | 45.0% | |
| GGAAAATATGGCTATTGGGC+TGG | + | chr4_2:55197696-55197715 | Msa0608170:intron | 45.0% | |
| TAGAAAGTAGAAGCAGAGCC+TGG | + | chr4_2:55197729-55197748 | Msa0608170:intron | 45.0% | |
| AGAAAGTAGAAGCAGAGCCT+GGG | + | chr4_2:55197730-55197749 | Msa0608170:intron | 45.0% | |
| GTCAACCTACTTAGCATCAC+CGG | - | chr4_2:55197801-55197820 | None:intergenic | 45.0% | |
| AAACCGCATCAAAGAAGCAG+AGG | + | chr4_2:55198054-55198073 | Msa0608170:CDS | 45.0% | |
| CTACCTCTGCTTCTTTGATG+CGG | - | chr4_2:55198060-55198079 | None:intergenic | 45.0% | |
| !! | ACTTAAAAAAAAAAATAAAA+GGG | - | chr4_2:55197676-55197695 | None:intergenic | 5.0% |
| !!! | TTTATTAATATATTTTCTTT+GGG | - | chr4_2:55197851-55197870 | None:intergenic | 5.0% |
| !!! | TTTTATTAATATATTTTCTT+TGG | - | chr4_2:55197852-55197871 | None:intergenic | 5.0% |
| !! | AAAGAAAATATATTAATAAA+AGG | + | chr4_2:55197851-55197870 | Msa0608170:intron | 5.0% |
| TGGGATCTCTTTGGCACCAT+TGG | + | chr4_2:55195472-55195491 | Msa0608170:CDS | 50.0% | |
| CAGAAGGTGGAGCTAGTTGA+AGG | + | chr4_2:55195535-55195554 | Msa0608170:CDS | 50.0% | |
| GTGGAGCTAGTTGAAGGAGA+TGG | + | chr4_2:55195541-55195560 | Msa0608170:CDS | 50.0% | |
| GAGCTAGTTGAAGGAGATGG+AGG | + | chr4_2:55195544-55195563 | Msa0608170:CDS | 50.0% | |
| GTTGAAGGAGATGGAGGAGT+TGG | + | chr4_2:55195550-55195569 | Msa0608170:CDS | 50.0% | |
| !! | CTCGATTAGGTTGACACCAG+TGG | + | chr4_2:55196448-55196467 | Msa0608170:intron | 50.0% |
| !! | GATTAGGTTGACACCAGTGG+CGG | + | chr4_2:55196451-55196470 | Msa0608170:intron | 50.0% |
| GCCAGGAATTTCTTAGAGCC+TGG | + | chr4_2:55196475-55196494 | Msa0608170:intron | 50.0% | |
| !! | CCCAGGCTCTAAGAAATTCC+TGG | - | chr4_2:55196479-55196498 | None:intergenic | 50.0% |
| GCCCAAACAAACACACCAAC+AGG | + | chr4_2:55197010-55197029 | Msa0608170:intron | 50.0% | |
| CGCCTGTTGGTGTGTTTGTT+TGG | - | chr4_2:55197015-55197034 | None:intergenic | 50.0% | |
| TGGAGGAAGTGAAGAGGAGA+AGG | + | chr4_2:55197475-55197494 | Msa0608170:intron | 50.0% | |
| TGGAGACTGAGAGTTGAGAG+AGG | + | chr4_2:55197506-55197525 | Msa0608170:intron | 50.0% | |
| CTGAGAGTTGAGAGAGGAAG+AGG | + | chr4_2:55197512-55197531 | Msa0608170:intron | 50.0% | |
| ! | GAAGAGGCGCAAATTGAGAG+AGG | + | chr4_2:55197528-55197547 | Msa0608170:intron | 50.0% |
| TGACACCGGTGATGCTAAGT+AGG | + | chr4_2:55197793-55197812 | Msa0608170:intron | 50.0% | |
| GGAGTTTGAACAGGTACACC+TGG | + | chr4_2:55197989-55198008 | Msa0608170:intron | 50.0% | |
| GAAGCAGAGGTAGTTGAAGG+TGG | + | chr4_2:55198067-55198086 | Msa0608170:CDS | 50.0% | |
| ! | AGCATCACCGGTGTCAACCA+GGG | - | chr4_2:55197789-55197808 | None:intergenic | 55.0% |
| ! | TAGCATCACCGGTGTCAACC+AGG | - | chr4_2:55197790-55197809 | None:intergenic | 55.0% |
| TCTTTGTAACCAGCTGGGCC+AGG | - | chr4_2:55198010-55198029 | None:intergenic | 55.0% | |
| GAAATTCCTGGCTCCGCCAC+TGG | - | chr4_2:55196467-55196486 | None:intergenic | 60.0% | |
| ! | TTACACCCCCCAGCTAGCCT+GGG | - | chr4_2:55197762-55197781 | None:intergenic | 60.0% |
| TAACCGCCCCTGGTTGACAC+CGG | + | chr4_2:55197779-55197798 | Msa0608170:intron | 60.0% | |
| ! | GCATCACCGGTGTCAACCAG+GGG | - | chr4_2:55197788-55197807 | None:intergenic | 60.0% |
| ! | TTGACACCAGTGGCGGAGCC+AGG | + | chr4_2:55196458-55196477 | Msa0608170:intron | 65.0% |
| GTTACACCCCCCAGCTAGCC+TGG | - | chr4_2:55197763-55197782 | None:intergenic | 65.0% | |
| ! | TCACCGGTGTCAACCAGGGG+CGG | - | chr4_2:55197785-55197804 | None:intergenic | 65.0% |
| ACAGGTACACCTGGCCCAGC+TGG | + | chr4_2:55197998-55198017 | Msa0608170:intron | 65.0% | |
| ! | GGCTAGCGCCCAGGCTAGCT+GGG | + | chr4_2:55197751-55197770 | Msa0608170:intron | 70.0% |
| ! | GCTAGCGCCCAGGCTAGCTG+GGG | + | chr4_2:55197752-55197771 | Msa0608170:intron | 70.0% |
| ! | CTAGCGCCCAGGCTAGCTGG+GGG | + | chr4_2:55197753-55197772 | Msa0608170:intron | 70.0% |
| ! | TAGCGCCCAGGCTAGCTGGG+GGG | + | chr4_2:55197754-55197773 | Msa0608170:intron | 70.0% |
| !! | CAGAGCCTGGGCTAGCGCCC+AGG | + | chr4_2:55197742-55197761 | Msa0608170:intron | 75.0% |
| ! | GCTAGCCTGGGCGCTAGCCC+AGG | - | chr4_2:55197750-55197769 | None:intergenic | 75.0% |
| ! | GGGCTAGCGCCCAGGCTAGC+TGG | + | chr4_2:55197750-55197769 | Msa0608170:intron | 75.0% |
| ! | CTGGGGGGTGTAACCGCCCC+TGG | + | chr4_2:55197769-55197788 | Msa0608170:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 55195316 | 55198532 | 55195316 | ID=Msa0608170;Name=Msa0608170 |
| chr4_2 | mRNA | 55195316 | 55198532 | 55195316 | ID=Msa0608170-mRNA-1;Parent=Msa0608170;Name=Msa0608170-mRNA-1;_AED=0.29;_eAED=0.29;_QI=99|1|1|1|1|1|2|229|162 |
| chr4_2 | exon | 55195316 | 55195601 | 55195316 | ID=Msa0608170-mRNA-1:exon:14004;Parent=Msa0608170-mRNA-1 |
| chr4_2 | exon | 55198002 | 55198532 | 55198002 | ID=Msa0608170-mRNA-1:exon:14005;Parent=Msa0608170-mRNA-1 |
| chr4_2 | five_prime_UTR | 55195316 | 55195414 | 55195316 | ID=Msa0608170-mRNA-1:five_prime_utr;Parent=Msa0608170-mRNA-1 |
| chr4_2 | CDS | 55195415 | 55195601 | 55195415 | ID=Msa0608170-mRNA-1:cds;Parent=Msa0608170-mRNA-1 |
| chr4_2 | CDS | 55198002 | 55198303 | 55198002 | ID=Msa0608170-mRNA-1:cds;Parent=Msa0608170-mRNA-1 |
| chr4_2 | three_prime_UTR | 55198304 | 55198532 | 55198304 | ID=Msa0608170-mRNA-1:three_prime_utr;Parent=Msa0608170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
