AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357090 MtrunA17_Chr3g0093971 93.819 453 28 0 1 453 2 454 0.0 897
Msa0357090 MtrunA17_Chr2g0285351 44.348 460 233 6 8 449 11 465 3.66e-137 402
Msa0357090 MtrunA17_Chr2g0285371 44.091 440 228 5 23 449 31 465 6.45e-134 394
Msa0357090 MtrunA17_Chr2g0285381 44.342 433 230 4 23 449 34 461 2.71e-133 392
Msa0357090 MtrunA17_Chr4g0009681 43.274 446 235 9 14 449 26 463 5.30e-126 374
Msa0357090 MtrunA17_Chr4g0009701 42.152 446 240 9 14 449 29 466 2.04e-124 370
Msa0357090 MtrunA17_Chr3g0133011 42.605 453 237 6 16 449 44 492 3.93e-124 370
Msa0357090 MtrunA17_Chr4g0009711 42.444 450 242 8 10 449 24 466 4.00e-124 369
Msa0357090 MtrunA17_Chr4g0009651 41.256 446 244 9 14 449 29 466 2.88e-121 362
Msa0357090 MtrunA17_Chr4g0009661 41.704 446 242 9 14 449 29 466 2.90e-120 359
Msa0357090 MtrunA17_Chr4g0009671 41.395 430 231 9 32 449 11 431 2.27e-115 345
Msa0357090 MtrunA17_Chr4g0009641 38.530 449 237 9 10 449 24 442 1.04e-106 323
Msa0357090 MtrunA17_Chr4g0009721 37.251 451 219 9 9 449 19 415 2.81e-97 298
Msa0357090 MtrunA17_Chr8g0338461 32.863 496 275 9 7 453 9 495 8.50e-89 279
Msa0357090 MtrunA17_Chr7g0234051 32.041 490 280 8 7 449 8 491 9.28e-85 268
Msa0357090 MtrunA17_Chr7g0249431 31.224 490 282 11 7 448 11 493 1.26e-81 260
Msa0357090 MtrunA17_Chr7g0234041 31.364 440 229 11 23 408 24 444 3.11e-62 209
Msa0357090 MtrunA17_Chr2g0281621 29.438 445 278 15 25 452 35 460 3.24e-49 174
Msa0357090 MtrunA17_Chr4g0068841 28.009 457 283 12 21 449 34 472 8.44e-49 173
Msa0357090 MtrunA17_Chr3g0094811 27.778 468 287 16 6 448 7 448 1.47e-47 169
Msa0357090 MtrunA17_Chr2g0309511 28.637 433 279 12 25 445 39 453 2.72e-47 169
Msa0357090 MtrunA17_Chr1g0199991 27.778 432 283 11 26 445 33 447 4.79e-47 168
Msa0357090 MtrunA17_Chr1g0199971 27.293 458 297 12 7 445 7 447 1.43e-46 167
Msa0357090 MtrunA17_Chr4g0038311 26.407 462 312 12 6 448 5 457 2.92e-46 166
Msa0357090 MtrunA17_Chr4g0047861 28.176 433 274 16 25 437 53 468 5.62e-46 166
Msa0357090 MtrunA17_Chr2g0304931 27.315 432 284 12 29 447 41 455 1.44e-45 164
Msa0357090 MtrunA17_Chr2g0309521 27.945 433 282 13 25 445 39 453 1.58e-45 164
Msa0357090 MtrunA17_Chr3g0118851 28.706 425 277 12 29 448 81 484 1.85e-45 165
Msa0357090 MtrunA17_Chr7g0219051 27.064 436 290 13 28 449 38 459 1.05e-44 162
Msa0357090 MtrunA17_Chr2g0279381 36.916 214 114 3 209 407 4 211 1.32e-44 155
Msa0357090 MtrunA17_Chr3g0118841 27.934 426 284 10 26 448 79 484 1.38e-44 162
Msa0357090 MtrunA17_Chr2g0309541 27.335 439 289 12 24 449 37 458 4.32e-44 160
Msa0357090 MtrunA17_Chr4g0068861 29.056 413 249 16 21 405 80 476 1.15e-42 157
Msa0357090 MtrunA17_Chr2g0318911 26.667 435 293 12 25 449 40 458 2.03e-42 156
Msa0357090 MtrunA17_Chr4g0028271 27.830 424 266 11 42 452 99 495 4.89e-42 155
Msa0357090 MtrunA17_Chr4g0020241 26.959 434 280 14 26 448 74 481 6.40e-42 155
Msa0357090 MtrunA17_Chr2g0279371 41.489 188 94 2 6 192 8 180 8.58e-42 147
Msa0357090 MtrunA17_Chr1g0153881 27.336 428 280 12 26 448 90 491 2.63e-41 153
Msa0357090 MtrunA17_Chr2g0281641 29.199 387 236 13 72 437 1 370 6.82e-41 150
Msa0357090 MtrunA17_Chr1g0171411 28.605 423 255 14 42 447 85 477 1.06e-40 152
Msa0357090 MtrunA17_Chr3g0090331 24.654 434 294 13 26 449 75 485 8.44e-40 149
Msa0357090 MtrunA17_Chr4g0028281 27.187 423 270 11 42 452 97 493 1.27e-39 149
Msa0357090 MtrunA17_Chr3g0118881 28.182 440 278 13 29 453 81 497 1.58e-39 149
Msa0357090 MtrunA17_Chr3g0131731 24.654 434 301 10 29 448 34 455 4.10e-39 147
Msa0357090 MtrunA17_Chr2g0327401 26.549 452 282 10 16 453 85 500 6.47e-39 147
Msa0357090 MtrunA17_Chr1g0199171 26.000 450 276 11 28 452 71 488 9.06e-39 146
Msa0357090 MtrunA17_Chr7g0221551 23.871 465 306 13 7 448 12 451 2.96e-38 144
Msa0357090 MtrunA17_Chr4g0028261 25.057 439 260 11 42 452 120 517 1.23e-37 144
Msa0357090 MtrunA17_Chr3g0126051 25.602 457 312 13 3 443 8 452 3.42e-37 142
Msa0357090 MtrunA17_Chr3g0118831 26.620 432 262 11 26 453 78 458 3.56e-37 141
Msa0357090 MtrunA17_Chr3g0118861 27.438 441 256 14 26 452 76 466 8.80e-37 140
Msa0357090 MtrunA17_Chr3g0126031 24.766 428 303 9 25 443 28 445 1.31e-36 140
Msa0357090 MtrunA17_Chr5g0431301 25.342 438 300 12 25 447 29 454 3.10e-36 139
Msa0357090 MtrunA17_Chr8g0385871 25.612 449 282 16 26 448 34 456 3.22e-36 139
Msa0357090 MtrunA17_Chr4g0028241 25.882 425 275 11 43 452 92 491 1.02e-35 138
Msa0357090 MtrunA17_Chr2g0327381 25.510 490 290 17 20 452 67 538 1.30e-35 138
Msa0357090 MtrunA17_Chr2g0327371 26.240 484 277 18 17 453 65 515 2.22e-35 137
Msa0357090 MtrunA17_Chr1g0153941 25.870 460 273 14 26 448 78 506 2.56e-34 134
Msa0357090 MtrunA17_Chr3g0118891 26.698 427 250 14 29 448 81 451 2.42e-32 128
Msa0357090 MtrunA17_Chr5g0447441 24.528 424 277 13 36 447 39 431 4.77e-29 118
Msa0357090 MtrunA17_Chr1g0204191 24.091 440 268 15 26 447 92 483 1.81e-27 114
Msa0357090 MtrunA17_Chr4g0044051 23.150 419 281 10 41 447 46 435 5.79e-26 109
Msa0357090 MtrunA17_Chr1g0153931 35.326 184 110 5 26 205 76 254 4.82e-25 103
Msa0357090 MtrunA17_Chr1g0165811 28.507 221 143 6 26 244 31 238 5.28e-24 100
Msa0357090 MtrunA17_Chr1g0153921 30.043 233 128 9 225 448 4 210 1.59e-17 81.3
Msa0357090 MtrunA17_Chr2g0285401 38.095 84 40 1 342 413 7 90 6.01e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357090 AT1G33540.1 46.050 443 221 7 20 449 23 460 2.79e-135 397
Msa0357090 AT5G36180.1 45.602 432 212 5 20 449 27 437 7.50e-132 388
Msa0357090 AT1G73300.1 45.139 432 214 5 20 449 27 437 3.87e-131 386
Msa0357090 AT1G73300.2 45.139 432 214 5 20 449 27 437 3.87e-131 386
Msa0357090 AT1G73280.1 43.722 446 228 5 4 447 11 435 1.50e-130 385
Msa0357090 AT1G73310.1 45.833 432 211 5 20 449 27 437 5.25e-130 383
Msa0357090 AT1G73270.2 46.296 432 209 5 20 449 27 437 2.04e-129 382
Msa0357090 AT1G73270.1 46.296 432 209 5 20 449 27 437 2.82e-129 382
Msa0357090 AT3G10450.1 44.289 429 218 4 22 449 25 433 2.59e-128 379
Msa0357090 AT2G23000.1 45.538 437 209 6 20 449 19 433 6.52e-128 378
Msa0357090 AT2G23000.2 45.538 437 209 6 20 449 19 433 6.52e-128 378
Msa0357090 AT3G12203.1 43.151 438 227 4 13 449 17 433 8.45e-127 375
Msa0357090 AT1G73290.1 44.444 432 215 6 20 449 26 434 1.17e-126 374
Msa0357090 AT3G12203.3 43.187 433 224 4 18 449 1 412 1.64e-126 373
Msa0357090 AT2G22980.1 44.342 433 212 7 20 449 20 426 1.03e-124 369
Msa0357090 AT1G33540.2 45.107 419 212 7 44 449 4 417 1.91e-124 368
Msa0357090 AT2G22920.2 43.880 433 220 5 20 449 19 431 2.05e-124 369
Msa0357090 AT2G22970.1 44.444 432 217 6 20 449 19 429 8.15e-124 367
Msa0357090 AT2G23010.1 43.665 442 232 6 9 449 8 433 3.52e-123 365
Msa0357090 AT2G23010.2 43.439 442 233 6 9 449 8 433 1.27e-122 364
Msa0357090 AT2G22990.1 42.459 431 229 5 20 449 17 429 2.18e-122 363
Msa0357090 AT3G12220.1 43.779 434 221 5 22 453 23 435 2.76e-121 361
Msa0357090 AT3G10450.4 45.063 395 201 2 22 415 25 404 6.98e-121 359
Msa0357090 AT1G73310.2 46.076 395 195 3 20 412 27 405 8.47e-121 359
Msa0357090 AT5G09640.1 40.481 457 249 9 8 447 9 459 5.26e-118 353
Msa0357090 AT1G73290.3 44.924 394 197 4 20 411 26 401 7.72e-117 348
Msa0357090 AT2G22970.3 44.417 412 207 5 20 429 19 410 2.03e-116 348
Msa0357090 AT2G22970.4 44.282 411 207 5 20 428 19 409 3.44e-116 347
Msa0357090 AT2G22980.2 43.447 412 205 6 20 428 20 406 7.60e-116 346
Msa0357090 AT2G22990.5 41.531 431 224 6 20 449 17 420 8.42e-116 346
Msa0357090 AT2G22980.4 43.552 411 204 6 20 427 20 405 2.73e-115 345
Msa0357090 AT3G10450.2 42.260 407 214 4 44 449 4 390 8.29e-115 343
Msa0357090 AT2G22990.3 42.195 410 219 4 20 428 17 409 2.63e-114 343
Msa0357090 AT2G22990.4 42.298 409 218 4 20 427 17 408 2.77e-114 342
Msa0357090 AT2G22920.1 44.133 392 201 3 20 408 19 395 4.23e-113 339
Msa0357090 AT3G12230.1 41.026 429 232 4 22 449 23 431 2.53e-112 338
Msa0357090 AT3G12240.1 40.698 430 232 5 22 449 24 432 4.89e-112 337
Msa0357090 AT3G12220.2 42.233 412 215 5 44 453 15 405 3.33e-109 329
Msa0357090 AT3G12203.2 41.162 396 211 4 55 449 1 375 2.27e-108 326
Msa0357090 AT3G10450.3 42.895 373 197 2 44 415 4 361 6.26e-107 322
Msa0357090 AT1G73280.2 43.869 367 188 3 4 368 11 361 1.66e-103 313
Msa0357090 AT2G22980.3 43.785 354 173 6 20 368 20 352 7.55e-95 290
Msa0357090 AT3G12220.3 38.568 433 193 5 22 453 23 383 1.01e-93 288
Msa0357090 AT2G22920.4 46.302 311 151 2 20 329 19 314 9.63e-91 278
Msa0357090 AT2G22970.2 46.302 311 150 3 20 329 19 313 1.05e-89 276
Msa0357090 AT1G73280.4 40.171 351 188 4 98 447 4 333 2.44e-88 273
Msa0357090 AT5G36180.5 40.510 353 188 4 98 449 4 335 2.63e-88 273
Msa0357090 AT5G36180.3 40.510 353 188 4 98 449 4 335 2.63e-88 273
Msa0357090 AT1G73290.2 49.248 266 132 2 20 284 26 289 7.97e-87 268
Msa0357090 AT4G12910.1 32.329 498 286 8 1 453 6 497 2.30e-86 273
Msa0357090 AT3G25420.1 31.873 502 277 10 1 449 1 490 3.06e-84 267
Msa0357090 AT1G73280.3 40.122 329 175 4 120 447 1 308 2.49e-82 256
Msa0357090 AT2G22990.6 38.739 333 186 4 117 449 1 315 2.33e-81 254
Msa0357090 AT5G36180.2 40.060 332 178 3 98 428 4 315 2.64e-81 254
Msa0357090 AT2G22990.2 38.438 333 187 4 117 449 1 315 1.14e-80 253
Msa0357090 AT1G73310.3 41.139 316 169 2 98 412 4 303 3.05e-80 251
Msa0357090 AT5G36180.4 41.158 311 166 2 98 407 4 298 3.73e-78 247
Msa0357090 AT4G12910.2 32.301 452 259 7 1 407 6 455 5.66e-77 247
Msa0357090 AT2G22980.5 39.172 314 164 5 117 428 1 289 1.50e-70 226
Msa0357090 AT2G22920.3 37.453 267 145 4 185 449 6 252 2.02e-55 185
Msa0357090 AT5G23210.1 29.176 449 273 12 26 444 52 485 2.77e-55 191
Msa0357090 AT2G05850.1 28.605 430 277 12 25 443 63 473 3.64e-51 180
Msa0357090 AT3G52020.1 28.670 436 283 12 25 451 79 495 1.00e-49 177
Msa0357090 AT3G52000.1 27.059 425 285 9 25 443 63 468 1.70e-49 176
Msa0357090 AT3G52010.1 28.538 431 275 13 25 443 64 473 1.74e-49 176
Msa0357090 AT1G61130.1 28.637 433 273 13 25 439 31 445 2.57e-49 175
Msa0357090 AT4G15100.1 28.256 453 281 13 18 444 37 471 4.53e-49 175
Msa0357090 AT2G35770.1 27.851 456 288 12 3 438 8 442 8.59e-48 171
Msa0357090 AT2G35780.1 28.538 431 273 13 29 445 33 442 2.53e-47 169
Msa0357090 AT1G11080.2 29.252 441 268 13 25 438 50 473 3.00e-46 167
Msa0357090 AT1G11080.1 29.252 441 268 13 25 438 50 473 3.60e-46 167
Msa0357090 AT5G23210.3 28.049 410 255 11 26 405 52 451 4.43e-46 166
Msa0357090 AT3G17180.1 27.378 431 275 15 42 449 55 470 8.65e-46 166
Msa0357090 AT5G22980.1 29.009 424 260 12 42 452 100 495 2.08e-45 165
Msa0357090 AT3G10410.1 29.343 426 258 12 42 453 101 497 2.70e-45 165
Msa0357090 AT4G30810.1 24.839 467 316 11 4 449 5 457 8.09e-45 163
Msa0357090 AT3G63470.1 27.419 434 272 18 25 443 81 486 6.59e-44 161
Msa0357090 AT2G24010.1 26.498 434 293 13 25 449 30 446 1.03e-43 159
Msa0357090 AT3G45010.1 27.739 429 269 12 38 452 99 500 1.84e-43 160
Msa0357090 AT2G24000.1 26.802 444 287 13 26 449 31 456 2.62e-43 159
Msa0357090 AT5G08260.1 26.757 441 290 15 31 449 42 471 2.63e-43 159
Msa0357090 AT1G28110.1 26.503 449 276 15 26 448 32 452 6.09e-43 157
Msa0357090 AT1G28110.2 26.503 449 276 15 26 448 32 452 6.09e-43 157
Msa0357090 AT3G07990.1 26.340 429 293 10 26 445 34 448 1.30e-42 157
Msa0357090 AT4G30610.1 26.018 442 292 13 26 449 33 457 1.98e-42 156
Msa0357090 AT1G43780.1 25.694 432 299 10 25 443 37 459 2.07e-42 156
Msa0357090 AT5G23210.5 27.708 397 243 11 78 444 8 390 4.70e-42 154
Msa0357090 AT5G23210.2 27.525 396 243 11 79 444 8 389 3.10e-41 152
Msa0357090 AT3G17180.2 27.226 393 252 14 42 411 55 436 4.49e-40 149
Msa0357090 AT2G33530.1 25.556 450 281 16 26 448 34 456 1.84e-39 148
Msa0357090 AT2G24010.2 25.390 449 294 14 25 449 30 461 7.63e-39 146
Msa0357090 AT3G02110.1 24.842 475 299 15 9 445 8 462 1.38e-38 146
Msa0357090 AT2G12480.3 25.214 468 308 14 4 449 5 452 1.75e-36 140
Msa0357090 AT2G24010.3 24.684 474 291 17 25 449 1 457 1.30e-35 137
Msa0357090 AT2G12480.4 24.890 454 291 14 4 443 5 422 1.81e-35 137
Msa0357090 AT2G12480.1 24.670 454 290 14 4 443 5 420 1.50e-34 134
Msa0357090 AT2G12480.2 24.449 454 292 14 4 443 5 421 2.11e-33 131
Msa0357090 AT5G42240.1 24.724 453 288 14 25 449 32 459 4.95e-33 130
Msa0357090 AT2G22960.1 42.222 135 73 2 315 449 51 180 4.98e-33 123
Msa0357090 AT5G42230.1 24.027 437 309 11 25 448 28 454 5.91e-33 130
Msa0357090 AT5G42230.2 24.027 437 309 11 25 448 28 454 5.91e-33 130
Msa0357090 AT1G15000.1 26.168 428 266 16 33 447 30 420 6.24e-33 129
Msa0357090 AT5G23210.4 26.050 357 225 10 79 405 8 355 4.94e-32 125
Msa0357090 AT3G56540.1 37.821 156 91 3 25 179 79 229 9.11e-27 108
Msa0357090 AT2G24010.4 25.000 368 240 13 25 368 1 356 1.56e-23 101
Msa0357090 AT5G22960.1 26.380 163 96 2 42 204 36 174 2.39e-16 77.8
Msa0357090 AT2G24000.2 23.050 282 187 8 185 449 125 393 1.05e-15 79.3

Find 114 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTGTGCATTGAAATTT+TGG 0.074854 3_1:+37679558 None:intergenic
GAGACACACTTTGTGTTATT+TGG 0.142435 3_1:+37674995 None:intergenic
AAACAATTGAATTGCATTAT+TGG 0.145288 3_1:+37679611 None:intergenic
AACATCCAAGCTCTCATTTA+TGG 0.152486 3_1:-37674393 Msa0357090:CDS
TTCAAGATGATCAAGAATTT+TGG 0.210650 3_1:-37674785 Msa0357090:CDS
CGTTTACCAATGATGGAAAT+TGG 0.228815 3_1:-37672808 Msa0357090:three_prime_UTR
AGGAATATGCTTCCTTATAT+TGG 0.245065 3_1:-37679541 Msa0357090:five_prime_UTR
CCAACGAACCAAAGTAAAAT+TGG 0.255453 3_1:+37677321 None:intergenic
TCTGCCATTCATGGTTTATT+CGG 0.256799 3_1:-37679162 Msa0357090:CDS
TTAGAGTTATTATCATATTC+TGG 0.265014 3_1:-37674667 Msa0357090:intron
GTAACCTCATAGAGTTCTTT+TGG 0.276248 3_1:+37675196 None:intergenic
GATCAATAAAGGGATTTCTT+TGG 0.279427 3_1:+37677343 None:intergenic
GAACAGGTTGTCGAATTATC+TGG 0.296761 3_1:+37674805 None:intergenic
ACATGAGCATACATGATAAA+TGG 0.302757 3_1:-37673988 Msa0357090:CDS
TTTAATGCTTCTGCCATTCA+TGG 0.306015 3_1:-37679171 Msa0357090:CDS
ATCAATAAAGGGATTTCTTT+GGG 0.306892 3_1:+37677344 None:intergenic
AAGTAAAATTGGATCAATAA+AGG 0.309391 3_1:+37677332 None:intergenic
GAGCCACCACCTATGTAAAA+TGG 0.310655 3_1:+37675881 None:intergenic
CTTTATTCGTTTACCAATGA+TGG 0.320045 3_1:-37672815 Msa0357090:three_prime_UTR
TAATCGTCATCCATTGTTAA+TGG 0.320811 3_1:+37676194 None:intergenic
CTTCCATTCAAGCTTGAAAC+AGG 0.320931 3_1:-37679101 Msa0357090:CDS
CATAGGCTTAAATGAATATA+TGG 0.324271 3_1:+37672850 None:intergenic
AAAATAAAAGTGCCAATATA+AGG 0.326613 3_1:+37679529 None:intergenic
CTAATTGTACTTCGATTTGA+TGG 0.327834 3_1:-37672887 Msa0357090:exon
CAATTACCAATTTCCATCAT+TGG 0.345478 3_1:+37672802 None:intergenic
CTGCCATTCATGGTTTATTC+GGG 0.352819 3_1:-37679161 Msa0357090:CDS
GTGAGAAATGGTCAAGGTTA+AGG 0.354359 3_1:+37679471 None:intergenic
ATCATATTCTGGTCGACATA+TGG 0.356883 3_1:-37674656 Msa0357090:CDS
CACCCTGTTTCAAGCTTGAA+TGG 0.358249 3_1:+37679098 None:intergenic
ATAGGTGGTGGCTCATATTC+AGG 0.362426 3_1:-37675872 Msa0357090:CDS
TCTATTGTCAAGAAACTTCC+TGG 0.362765 3_1:-37679137 Msa0357090:CDS
TATGGATTCAATTTAAGCTT+TGG 0.364416 3_1:+37676158 None:intergenic
GATCATATTATAAACTTCCT+TGG 0.367287 3_1:+37672936 None:intergenic
AATAATTCAGAACCATTATC+TGG 0.378302 3_1:-37679448 Msa0357090:intron
AATGGATTTGAGCTAAACTT+TGG 0.381264 3_1:+37675899 None:intergenic
ATCATATTATAAACTTCCTT+GGG 0.382265 3_1:+37672937 None:intergenic
CATTTAAGCCTATGTCTTTG+TGG 0.387571 3_1:-37672841 Msa0357090:three_prime_UTR
TGAATAAACTCACCAGATAA+TGG 0.391136 3_1:+37679436 None:intergenic
CTTTGGTTCGTTGGAGGTCC+AGG 0.395793 3_1:-37677312 Msa0357090:CDS
ACATCCAAGCTCTCATTTAT+GGG 0.397259 3_1:-37674392 Msa0357090:intron
AATTCTTGATCATCTTGAAC+AGG 0.398440 3_1:+37674789 None:intergenic
AGTAAAATTGGATCAATAAA+GGG 0.403601 3_1:+37677333 None:intergenic
CCAATTTAAATAGGGAACTA+AGG 0.404057 3_1:-37674502 Msa0357090:intron
AAGCTTAAATTGAATCCATA+TGG 0.406503 3_1:-37676155 Msa0357090:CDS
TCACGTTTATATGCTTATAC+AGG 0.423746 3_1:+37675251 None:intergenic
CACAACTGAGTACACAATCT+TGG 0.425607 3_1:-37674024 Msa0357090:CDS
GTCATTGGAGGAAAATTGTA+AGG 0.427277 3_1:-37675038 Msa0357090:CDS
AACATATGTGTCCAACCATA+TGG 0.429002 3_1:+37676140 None:intergenic
TAATCAGCACGATTGATTGC+AGG 0.432478 3_1:-37672674 None:intergenic
CTTACTTTGATGTTTATATG+TGG 0.434551 3_1:+37675393 None:intergenic
CTTCCGGTTGTGTAGTGTGA+TGG 0.436707 3_1:-37679225 Msa0357090:intron
TCATATTCTGGTCGACATAT+GGG 0.442425 3_1:-37674655 Msa0357090:CDS
TGTCCAAAATTTCAATGCAC+AGG 0.450191 3_1:-37679561 Msa0357090:five_prime_UTR
TTCTGAATTATTGTGAGAAA+TGG 0.451258 3_1:+37679459 None:intergenic
AGATGCAGCTGTATTGTGTT+AGG 0.452210 3_1:-37679197 Msa0357090:CDS
TTTGAGATGCAACAAGACTT+TGG 0.458687 3_1:-37674472 Msa0357090:CDS
TGCTTATACAGGTCAACAGC+AGG 0.461979 3_1:+37675262 None:intergenic
CGAATTATCTGGTTTACAGC+AGG 0.475505 3_1:+37674816 None:intergenic
ATTGTCATTCTACAGGGTGC+TGG 0.485614 3_1:-37672982 Msa0357090:intron
TAATTGTACTTCGATTTGAT+GGG 0.497555 3_1:-37672886 Msa0357090:three_prime_UTR
TTTGTTGAAGGTCAAGTAGC+CGG 0.506940 3_1:-37673956 Msa0357090:CDS
TTCCGGTTGTGTAGTGTGAT+GGG 0.507466 3_1:-37679224 Msa0357090:intron
CAATTTAAATAGGGAACTAA+GGG 0.515243 3_1:-37674501 Msa0357090:intron
GTTACCCATAAATGAGAGCT+TGG 0.518502 3_1:+37674388 None:intergenic
TAAAGAATCCACAAAGACAT+AGG 0.521424 3_1:+37672833 None:intergenic
TTGTTGAAGGTCAAGTAGCC+GGG 0.522863 3_1:-37673955 Msa0357090:intron
GAACCCGAATAAACCATGAA+TGG 0.531753 3_1:+37679158 None:intergenic
GCGATAATATTCTACAGCAC+TGG 0.536867 3_1:+37674431 None:intergenic
TATAATGTTGCAGTCATTGG+AGG 0.537774 3_1:-37675050 Msa0357090:intron
GATTCAATTTAAGCTTTGGA+AGG 0.537959 3_1:+37676162 None:intergenic
TTAAATTGAATCCATATGGT+TGG 0.543123 3_1:-37676151 Msa0357090:CDS
GCTGAAAGTGCAGAACATCC+TGG 0.543233 3_1:+37677294 None:intergenic
CAAGACATAGTTGCTAGGAA+TGG 0.549822 3_1:+37672754 None:intergenic
TATACCAAAAGAACTCTATG+AGG 0.551652 3_1:-37675200 Msa0357090:intron
TTCCTAGCAACTATGTCTTG+TGG 0.553141 3_1:-37672751 Msa0357090:three_prime_UTR
TGGCGTGCATGGTTTGTTGA+AGG 0.557717 3_1:-37673968 Msa0357090:CDS
TCTACAGGGTGCTGGACATG+TGG 0.561147 3_1:-37672974 Msa0357090:intron
TTTATAATATGATCAAGAGA+TGG 0.561717 3_1:-37672927 Msa0357090:CDS
CTTAACATATGTGGCTGTGA+AGG 0.562221 3_1:-37673313 Msa0357090:intron
AAACGATGAAAATGTGCGCA+AGG 0.564951 3_1:-37674631 Msa0357090:CDS
TCTTACTCAGAAACACAAGA+AGG 0.568210 3_1:-37676077 Msa0357090:CDS
TCATATTCAGGATTTACTAC+CGG 0.568587 3_1:-37675860 Msa0357090:CDS
TTGTGTAGATACATAGGAGT+GGG 0.572101 3_1:-37677408 Msa0357090:intron
TACATGATAAATGGCGTGCA+TGG 0.576655 3_1:-37673979 Msa0357090:CDS
GGCTCATACATTTAAGCCCA+AGG 0.580263 3_1:-37672953 Msa0357090:CDS
ATAGATATACCAGTTGGGAC+TGG 0.589621 3_1:-37676104 Msa0357090:CDS
TGTGTATTGTGTAGATACAT+AGG 0.592376 3_1:-37677414 Msa0357090:intron
AGACCACTACTTAACATATG+TGG 0.592789 3_1:-37673322 Msa0357090:CDS
CAAGATTGTGTACTCAGTTG+TGG 0.595973 3_1:+37674025 None:intergenic
TGTACATAGATATACCAGTT+GGG 0.596725 3_1:-37676109 Msa0357090:CDS
AGGAGTGGGAGAAGGAGCAA+AGG 0.597291 3_1:-37677394 Msa0357090:CDS
AATTGTACTTCGATTTGATG+GGG 0.600906 3_1:-37672885 Msa0357090:three_prime_UTR
TTATACAGGGCCATTAACAA+TGG 0.601640 3_1:-37676204 Msa0357090:intron
GGTTGTGTAGTGTGATGGGT+TGG 0.602148 3_1:-37679220 Msa0357090:intron
GAGAGCTTGGATGTTGGCGT+TGG 0.610183 3_1:+37674401 None:intergenic
ATAAATGAGAGCTTGGATGT+TGG 0.612398 3_1:+37674395 None:intergenic
GGAAGTTCCCCATCAAAACC+AGG 0.614528 3_1:+37679119 None:intergenic
TTCCACAAGACATAGTTGCT+AGG 0.617252 3_1:+37672749 None:intergenic
CAGCCACATATGTTAAGTAG+TGG 0.621576 3_1:+37673319 None:intergenic
AGATACATAGGAGTGGGAGA+AGG 0.622687 3_1:-37677402 Msa0357090:CDS
TAGCAGTGACACACTGTGGG+TGG 0.627959 3_1:-37676048 Msa0357090:CDS
ATTGTGTAGATACATAGGAG+TGG 0.639457 3_1:-37677409 Msa0357090:intron
GCTTATACAGGTCAACAGCA+GGG 0.641149 3_1:+37675263 None:intergenic
ATTATTGTGAGAAATGGTCA+AGG 0.654166 3_1:+37679465 None:intergenic
CTATAGCAGTGACACACTGT+GGG 0.654695 3_1:-37676051 Msa0357090:CDS
TTCCATTCAAGCTTGAAACA+GGG 0.655856 3_1:-37679100 Msa0357090:intron
ATGTACATAGATATACCAGT+TGG 0.665621 3_1:-37676110 Msa0357090:CDS
ACTATAGCAGTGACACACTG+TGG 0.674845 3_1:-37676052 Msa0357090:CDS
TCATTGGAGGAAAATTGTAA+GGG 0.680464 3_1:-37675037 Msa0357090:CDS
AATTTAAATAGGGAACTAAG+GGG 0.694403 3_1:-37674500 Msa0357090:intron
ATTTAAATAGGGAACTAAGG+GGG 0.702064 3_1:-37674499 Msa0357090:intron
GCAGGTGTTGTGATACAGAG+AGG 0.709877 3_1:+37674834 None:intergenic
CAAGGCTCTTCATGTCAGAG+AGG 0.710069 3_1:-37674613 Msa0357090:intron
ACAATGGATGACGATTACAG+TGG 0.739292 3_1:-37676188 Msa0357090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAATTTATTTTAAAT+AGG + chr3_1:37673884-37673903 None:intergenic 0.0%
!!! ATTTTTTTTTTTAAAAAAAT+GGG + chr3_1:37674582-37674601 None:intergenic 0.0%
!!! AATTTTTTTTTTTAAAAAAA+TGG + chr3_1:37674583-37674602 None:intergenic 0.0%
!!! ATTTTAATTAAAAACATGTT+TGG - chr3_1:37674367-37674386 Msa0357090:intron 10.0%
!!! TTAATTTGATGATTTAAATT+TGG - chr3_1:37676805-37676824 Msa0357090:intron 10.0%
!! TAAGATAATTAGTTATATAT+AGG + chr3_1:37676972-37676991 None:intergenic 10.0%
!! TAATTACAAGTTTATAATTA+GGG + chr3_1:37678706-37678725 None:intergenic 10.0%
!! TTAATTACAAGTTTATAATT+AGG + chr3_1:37678707-37678726 None:intergenic 10.0%
!! ATGAATTTCAATAAAAAAAA+AGG - chr3_1:37678805-37678824 Msa0357090:intron 10.0%
!!! ATGAATTTTTTTTTTTCTTT+TGG - chr3_1:37678833-37678852 Msa0357090:intron 10.0%
!!! ATTTTCTTTGATTTTCATTT+TGG - chr3_1:37672882-37672901 Msa0357090:three_prime_UTR 15.0%
!!! ATCTTTTGCATATAATAAAA+AGG - chr3_1:37673323-37673342 Msa0357090:CDS 15.0%
!! TGAAAAGAATAAACAAAATA+AGG - chr3_1:37673419-37673438 Msa0357090:intron 15.0%
!! AATAAACAAAATAAGGATAA+GGG - chr3_1:37673426-37673445 Msa0357090:intron 15.0%
!!! AATTTTCAATAAGATTACTT+TGG - chr3_1:37673848-37673867 Msa0357090:intron 15.0%
!!! AAATACTGCTATTAATTTTT+TGG - chr3_1:37674097-37674116 Msa0357090:intron 15.0%
!!! TCATTCTTACTTAAATTTTA+AGG + chr3_1:37674439-37674458 None:intergenic 15.0%
!! GATTAATATCATTATTACAT+TGG + chr3_1:37674500-37674519 None:intergenic 15.0%
!!! TACATATTCTTTTTTACAAA+AGG - chr3_1:37676264-37676283 Msa0357090:intron 15.0%
!! AATGATTATAAGATTCATAA+TGG + chr3_1:37677119-37677138 None:intergenic 15.0%
!! TTCAATAATCCAATTTAAAT+AGG - chr3_1:37677774-37677793 Msa0357090:intron 15.0%
!! TCAATAATCCAATTTAAATA+GGG - chr3_1:37677775-37677794 Msa0357090:intron 15.0%
!! TAACATTATCAAAGAAAAAA+AGG + chr3_1:37678176-37678195 None:intergenic 15.0%
!! AAATTAAAAACAAAATTACC+CGG + chr3_1:37678351-37678370 None:intergenic 15.0%
!!! TGAATTTTATAATCCAAATA+GGG + chr3_1:37679113-37679132 None:intergenic 15.0%
!!! TTGAATTTTATAATCCAAAT+AGG + chr3_1:37679114-37679133 None:intergenic 15.0%
!!! AAAATAAAAGTGCCAATATA+AGG + chr3_1:37672759-37672778 None:intergenic 20.0%
!!! AACCTAATTTTTTTTTCTTC+CGG - chr3_1:37673044-37673063 Msa0357090:intron 20.0%
!!! AATAAAAAGGTACTTAGATA+CGG - chr3_1:37673336-37673355 Msa0357090:CDS 20.0%
!! GAATAAACAAAATAAGGATA+AGG - chr3_1:37673425-37673444 Msa0357090:intron 20.0%
!! AACTTTATCTTCAATATGAT+TGG + chr3_1:37673940-37673959 None:intergenic 20.0%
!!! TCTCTAAAAAACTCTAATTT+GGG - chr3_1:37674530-37674549 Msa0357090:intron 20.0%
!!! TTTAACTTATTAGCCAATTA+TGG - chr3_1:37674847-37674866 Msa0357090:CDS 20.0%
!! AGTAAAATTGGATCAATAAA+GGG + chr3_1:37674955-37674974 None:intergenic 20.0%
!! AAGTAAAATTGGATCAATAA+AGG + chr3_1:37674956-37674975 None:intergenic 20.0%
!!! TTATTGATCCAATTTTACTT+TGG - chr3_1:37674956-37674975 Msa0357090:intron 20.0%
!!! TAAAGTTGTTTTATTGTTCT+AGG - chr3_1:37675039-37675058 Msa0357090:CDS 20.0%
!! GAATGAGAAAAATATACATT+TGG + chr3_1:37675090-37675109 None:intergenic 20.0%
!! TGACTTATCATAGTATAAAA+AGG + chr3_1:37675186-37675205 None:intergenic 20.0%
!! TTATACTATGATAAGTCATT+AGG - chr3_1:37675188-37675207 Msa0357090:intron 20.0%
!! AACAAAAATTGTTATAGTCA+AGG + chr3_1:37675858-37675877 None:intergenic 20.0%
!!! TACACTTCACTTATAATTTT+GGG + chr3_1:37676023-37676042 None:intergenic 20.0%
!! TTTATGATTTATCAATGCAA+AGG - chr3_1:37676311-37676330 Msa0357090:intron 20.0%
!!! ATCAAATTAACATTTGTTAC+TGG + chr3_1:37676795-37676814 None:intergenic 20.0%
!!! ATGATAATAACTCTAAAAGA+CGG + chr3_1:37677614-37677633 None:intergenic 20.0%
!! TTAGAGTTATTATCATATTC+TGG - chr3_1:37677618-37677637 Msa0357090:intron 20.0%
!!! GTACCATTTTATTAATTACA+TGG - chr3_1:37678891-37678910 Msa0357090:intron 20.0%
!!! AAAAAGTAGAGCTTTTTTAA+AGG - chr3_1:37679133-37679152 Msa0357090:CDS 20.0%
!!! ATTATAAATCTGAAATCCAT+AGG - chr3_1:37679204-37679223 Msa0357090:CDS 20.0%
!!! TTATAAATCTGAAATCCATA+GGG - chr3_1:37679205-37679224 Msa0357090:CDS 20.0%
!!! ATGACATTGCTATTAAATTT+TGG + chr3_1:37679266-37679285 None:intergenic 20.0%
!! AAATTTAATAGCAATGTCAT+TGG - chr3_1:37679266-37679285 Msa0357090:intron 20.0%
!! ATCATATTATAAACTTCCTT+GGG + chr3_1:37679351-37679370 None:intergenic 20.0%
!! TTTATAATATGATCAAGAGA+TGG - chr3_1:37679358-37679377 Msa0357090:intron 20.0%
! TTCTGAATTATTGTGAGAAA+TGG + chr3_1:37672829-37672848 None:intergenic 25.0%
! AATAATTCAGAACCATTATC+TGG - chr3_1:37672837-37672856 Msa0357090:three_prime_UTR 25.0%
! AACCGGAAGAAAAAAAAATT+AGG + chr3_1:37673049-37673068 None:intergenic 25.0%
! AAGATGCTTACATATATGAA+CGG + chr3_1:37673308-37673327 None:intergenic 25.0%
!!! ATAAAAAGGTACTTAGATAC+GGG - chr3_1:37673337-37673356 Msa0357090:CDS 25.0%
!!! AAATAAGGATAAGGGTATTT+AGG - chr3_1:37673434-37673453 Msa0357090:intron 25.0%
!!! AATAAGGATAAGGGTATTTA+GGG - chr3_1:37673435-37673454 Msa0357090:intron 25.0%
! GTTAGGTATGCTAATAAATA+AGG + chr3_1:37673560-37673579 None:intergenic 25.0%
! TAGATCTAATTTCTCATGTT+AGG + chr3_1:37673577-37673596 None:intergenic 25.0%
! ATTTCTCTTAAGCCAAATAT+GGG + chr3_1:37673614-37673633 None:intergenic 25.0%
! AAAACAATGGAGAAAGAAAA+AGG + chr3_1:37673717-37673736 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr3_1:37673730-37673749 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr3_1:37673743-37673762 None:intergenic 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr3_1:37673742-37673761 Msa0357090:intron 25.0%
! TTCAATAAGATTACTTTGGA+TGG - chr3_1:37673852-37673871 Msa0357090:intron 25.0%
! GCTATATTTCTTAGATGTTA+AGG - chr3_1:37674057-37674076 Msa0357090:intron 25.0%
!!! GTTTTAGTTAAACATATGTG+TGG - chr3_1:37674312-37674331 Msa0357090:intron 25.0%
!! CTCTCTAAAAAACTCTAATT+TGG - chr3_1:37674529-37674548 Msa0357090:intron 25.0%
!! CTCTAAAAAACTCTAATTTG+GGG - chr3_1:37674531-37674550 Msa0357090:intron 25.0%
! TCTAAAAAACTCTAATTTGG+GGG - chr3_1:37674532-37674551 Msa0357090:intron 25.0%
!! GCAAATGTTTTACTATTTTG+TGG - chr3_1:37674915-37674934 Msa0357090:intron 25.0%
! ATCAATAAAGGGATTTCTTT+GGG + chr3_1:37674944-37674963 None:intergenic 25.0%
! AATTGTTATAGTCAAGGTAA+GGG + chr3_1:37675852-37675871 None:intergenic 25.0%
! AAATTGTTATAGTCAAGGTA+AGG + chr3_1:37675853-37675872 None:intergenic 25.0%
!!! TCAGACTTTACTTATTTTTC+CGG - chr3_1:37675877-37675896 Msa0357090:CDS 25.0%
!! TTGATATTTTTCACCTAAAC+CGG + chr3_1:37675977-37675996 None:intergenic 25.0%
!! CTACACTTCACTTATAATTT+TGG + chr3_1:37676024-37676043 None:intergenic 25.0%
! ATGAATTGCAATGTTTATAC+AGG - chr3_1:37676067-37676086 Msa0357090:CDS 25.0%
! TGAATTGCAATGTTTATACA+GGG - chr3_1:37676068-37676087 Msa0357090:CDS 25.0%
! TATGGATTCAATTTAAGCTT+TGG + chr3_1:37676130-37676149 None:intergenic 25.0%
! AAGCTTAAATTGAATCCATA+TGG - chr3_1:37676130-37676149 Msa0357090:CDS 25.0%
! TTAAATTGAATCCATATGGT+TGG - chr3_1:37676134-37676153 Msa0357090:CDS 25.0%
!!! TCATATACTTTTTGAACAAC+AGG + chr3_1:37676452-37676471 None:intergenic 25.0%
!! GTTGTTCAAAAAGTATATGA+AGG - chr3_1:37676452-37676471 Msa0357090:intron 25.0%
! AAACATATACTAGTCAATAC+AGG + chr3_1:37676573-37676592 None:intergenic 25.0%
! TTACTGGAAACTTAATTAGT+AGG + chr3_1:37676779-37676798 None:intergenic 25.0%
! CTTACTTTGATGTTTATATG+TGG + chr3_1:37676895-37676914 None:intergenic 25.0%
! ATTATCTTATTCTTATCGTC+AGG - chr3_1:37676983-37677002 Msa0357090:intron 25.0%
! TTATCTTATTCTTATCGTCA+GGG - chr3_1:37676984-37677003 Msa0357090:intron 25.0%
!! CTTTTGGTATAAGATTCATA+TGG + chr3_1:37677076-37677095 None:intergenic 25.0%
! AAATATAATGTTGCAGTCAT+TGG - chr3_1:37677232-37677251 Msa0357090:intron 25.0%
!! TTCAAGATGATCAAGAATTT+TGG - chr3_1:37677500-37677519 Msa0357090:intron 25.0%
! TTAATCAAGTTAGCACAATT+CGG + chr3_1:37677582-37677601 None:intergenic 25.0%
! TTGAAATTATCATGAAGCTA+AGG - chr3_1:37677745-37677764 Msa0357090:intron 25.0%
! CAATTTAAATAGGGAACTAA+GGG - chr3_1:37677784-37677803 Msa0357090:intron 25.0%
! AATTTAAATAGGGAACTAAG+GGG - chr3_1:37677785-37677804 Msa0357090:intron 25.0%
!!! GACACAAACACATTTTAATT+TGG - chr3_1:37678140-37678159 Msa0357090:intron 25.0%
! ATTATGTCACACTCATTATT+TGG - chr3_1:37678201-37678220 Msa0357090:intron 25.0%
! TTATGTCACACTCATTATTT+GGG - chr3_1:37678202-37678221 Msa0357090:intron 25.0%
! TATACTCAAACTACAACAAT+TGG + chr3_1:37678392-37678411 None:intergenic 25.0%
!!! ATTTTAATATGCTATAGTCG+AGG + chr3_1:37678629-37678648 None:intergenic 25.0%
!!! TTTTTCTTTTGGCTCTTTAT+TGG - chr3_1:37678844-37678863 Msa0357090:intron 25.0%
! GGACCATGTAATTAATAAAA+TGG + chr3_1:37678897-37678916 None:intergenic 25.0%
!!! GTGTTTTAACGTATTTTGAA+GGG - chr3_1:37679155-37679174 Msa0357090:CDS 25.0%
! GATCATATTATAAACTTCCT+TGG + chr3_1:37679352-37679371 None:intergenic 25.0%
!! TAATTGTACTTCGATTTGAT+GGG - chr3_1:37679399-37679418 Msa0357090:intron 25.0%
! CATAGGCTTAAATGAATATA+TGG + chr3_1:37679438-37679457 None:intergenic 25.0%
! TGCATTGAAATTTTGGACAA+AGG + chr3_1:37672723-37672742 None:intergenic 30.0%
! ATTCCTGTGCATTGAAATTT+TGG + chr3_1:37672730-37672749 None:intergenic 30.0%
AGGAATATGCTTCCTTATAT+TGG - chr3_1:37672744-37672763 Msa0357090:three_prime_UTR 30.0%
ATTATTGTGAGAAATGGTCA+AGG + chr3_1:37672823-37672842 None:intergenic 30.0%
TGAATAAACTCACCAGATAA+TGG + chr3_1:37672852-37672871 None:intergenic 30.0%
!!! TCATTTTGGTGTTAATCATC+CGG - chr3_1:37672896-37672915 Msa0357090:exon 30.0%
GTTAATGAACTCTACCAAAT+AGG + chr3_1:37673018-37673037 None:intergenic 30.0%
!! ATAAGGATAAGGGTATTTAG+GGG - chr3_1:37673436-37673455 Msa0357090:intron 30.0%
CATTTCTCTTAAGCCAAATA+TGG + chr3_1:37673615-37673634 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG - chr3_1:37673645-37673664 Msa0357090:intron 30.0%
TCAACAAAGTTGTCATCAAA+TGG - chr3_1:37673768-37673787 Msa0357090:intron 30.0%
GTTAGTAAGATTACTTTCGA+TGG - chr3_1:37673908-37673927 Msa0357090:intron 30.0%
ACACTCAAGATATGAAAACA+CGG - chr3_1:37674028-37674047 Msa0357090:CDS 30.0%
! ATCCAGAAATCATAACTTGT+GGG + chr3_1:37674249-37674268 None:intergenic 30.0%
TGAAAAATGTTCCACGATTA+AGG - chr3_1:37674721-37674740 Msa0357090:intron 30.0%
GAAAAATGTTCCACGATTAA+GGG - chr3_1:37674722-37674741 Msa0357090:intron 30.0%
TGTGTATTGTGTAGATACAT+AGG - chr3_1:37674871-37674890 Msa0357090:CDS 30.0%
GATCAATAAAGGGATTTCTT+TGG + chr3_1:37674945-37674964 None:intergenic 30.0%
!!! TCAGCATTCTTTTTCGAAAA+TGG - chr3_1:37675009-37675028 Msa0357090:CDS 30.0%
! TTGTTTTCTTTGCCAATCAA+AGG + chr3_1:37675120-37675139 None:intergenic 30.0%
! TGTGAGAGAATTCTTTGAAA+AGG - chr3_1:37675140-37675159 Msa0357090:intron 30.0%
! GAATTCTTTGAAAAGGACTA+AGG - chr3_1:37675147-37675166 Msa0357090:intron 30.0%
CAATGAAAACACCAATTGTT+AGG - chr3_1:37675592-37675611 Msa0357090:intron 30.0%
!!! ATCTAATGGACTAGTCTTTT+GGG + chr3_1:37675643-37675662 None:intergenic 30.0%
! ACACTTTTATCTACTCGATA+TGG - chr3_1:37675695-37675714 Msa0357090:intron 30.0%
! CACTTTTATCTACTCGATAT+GGG - chr3_1:37675696-37675715 Msa0357090:intron 30.0%
TCCTAACAAGATGTCAAAAT+AGG - chr3_1:37675721-37675740 Msa0357090:intron 30.0%
CCTAACAAGATGTCAAAATA+GGG - chr3_1:37675722-37675741 Msa0357090:intron 30.0%
TCACATATACTCATGTTAGT+TGG - chr3_1:37675776-37675795 Msa0357090:intron 30.0%
!!! TGAGTGAGTTTTTTAAGACT+TGG + chr3_1:37675940-37675959 None:intergenic 30.0%
! ACTCAACAAGAATTTTGTAC+CGG - chr3_1:37675955-37675974 Msa0357090:intron 30.0%
TAATCGTCATCCATTGTTAA+TGG + chr3_1:37676094-37676113 None:intergenic 30.0%
!! GATTCAATTTAAGCTTTGGA+AGG + chr3_1:37676126-37676145 None:intergenic 30.0%
ATGTACATAGATATACCAGT+TGG - chr3_1:37676175-37676194 Msa0357090:CDS 30.0%
TGTACATAGATATACCAGTT+GGG - chr3_1:37676176-37676195 Msa0357090:CDS 30.0%
ATATTCTACTTTCAATGCAG+TGG - chr3_1:37676351-37676370 Msa0357090:intron 30.0%
! AATGGATTTGAGCTAAACTT+TGG + chr3_1:37676389-37676408 None:intergenic 30.0%
! AGCTCAAATCCATTTTACAT+AGG - chr3_1:37676395-37676414 Msa0357090:intron 30.0%
! TCAAATCCATTTTACATAGG+TGG - chr3_1:37676398-37676417 Msa0357090:intron 30.0%
TCATATTCAGGATTTACTAC+CGG - chr3_1:37676425-37676444 Msa0357090:intron 30.0%
TATGAAGGTAAACACTAACT+AGG - chr3_1:37676467-37676486 Msa0357090:intron 30.0%
!! GGACTTCTAAAATCTTGTTT+CGG + chr3_1:37676524-37676543 None:intergenic 30.0%
AAAGTAAGAAAACGTGTGTT+TGG - chr3_1:37676607-37676626 Msa0357090:intron 30.0%
TCACGTTTATATGCTTATAC+AGG + chr3_1:37677037-37677056 None:intergenic 30.0%
TATACCAAAAGAACTCTATG+AGG - chr3_1:37677085-37677104 Msa0357090:intron 30.0%
! TAATTTGCATCTAGCTATGA+AGG - chr3_1:37677175-37677194 Msa0357090:intron 30.0%
TCATTGGAGGAAAATTGTAA+GGG - chr3_1:37677248-37677267 Msa0357090:intron 30.0%
!!! AGATTTTGAAGCTTATTCTG+AGG - chr3_1:37677313-37677332 Msa0357090:CDS 30.0%
TGCATTCATAGTAATGCATT+TGG - chr3_1:37677352-37677371 Msa0357090:CDS 30.0%
AATTCTTGATCATCTTGAAC+AGG + chr3_1:37677499-37677518 None:intergenic 30.0%
CCTTAGTTCCCTATTTAAAT+TGG + chr3_1:37677786-37677805 None:intergenic 30.0%
CCAATTTAAATAGGGAACTA+AGG - chr3_1:37677783-37677802 Msa0357090:intron 30.0%
ATTTAAATAGGGAACTAAGG+GGG - chr3_1:37677786-37677805 Msa0357090:intron 30.0%
ACATGAGCATACATGATAAA+TGG - chr3_1:37678297-37678316 Msa0357090:intron 30.0%
AAAACATTGATGTGTCAAGT+AGG - chr3_1:37678557-37678576 Msa0357090:intron 30.0%
AAACATTGATGTGTCAAGTA+GGG - chr3_1:37678558-37678577 Msa0357090:intron 30.0%
!!! TGGTTTTGTTAGATTGAGTT+AGG + chr3_1:37678662-37678681 None:intergenic 30.0%
CAAATCTTCAACTTACAAGT+TGG + chr3_1:37678682-37678701 None:intergenic 30.0%
!!! TTTTGGCTCTTTATTGGATT+TGG - chr3_1:37678850-37678869 Msa0357090:intron 30.0%
CTTTATTGGATTTGGATGAA+AGG - chr3_1:37678858-37678877 Msa0357090:intron 30.0%
ATCTGGGTGAAATATTCAAA+AGG + chr3_1:37678918-37678937 None:intergenic 30.0%
TTGTAGATTTCTGTGAATCT+GGG + chr3_1:37678934-37678953 None:intergenic 30.0%
!!! GGTGTTTTAACGTATTTTGA+AGG - chr3_1:37679154-37679173 Msa0357090:CDS 30.0%
!! TAACGTATTTTGAAGGGTTT+TGG - chr3_1:37679161-37679180 Msa0357090:CDS 30.0%
TAATTCCATTGTCATTCTAC+AGG - chr3_1:37679296-37679315 Msa0357090:intron 30.0%
AATTCCATTGTCATTCTACA+GGG - chr3_1:37679297-37679316 Msa0357090:intron 30.0%
! CTAATTGTACTTCGATTTGA+TGG - chr3_1:37679398-37679417 Msa0357090:intron 30.0%
! AATTGTACTTCGATTTGATG+GGG - chr3_1:37679400-37679419 Msa0357090:intron 30.0%
TAAAGAATCCACAAAGACAT+AGG + chr3_1:37679455-37679474 None:intergenic 30.0%
CTTTATTCGTTTACCAATGA+TGG - chr3_1:37679470-37679489 Msa0357090:five_prime_UTR 30.0%
CAATTACCAATTTCCATCAT+TGG + chr3_1:37679486-37679505 None:intergenic 30.0%
!! GAAATTTTGGACAAAGGTAC+TGG + chr3_1:37672717-37672736 None:intergenic 35.0%
TGTCCAAAATTTCAATGCAC+AGG - chr3_1:37672724-37672743 Msa0357090:three_prime_UTR 35.0%
! GTCTAGAGTTGAATGAAGTT+TGG - chr3_1:37672954-37672973 Msa0357090:CDS 35.0%
GGATAAGAATTCTTCTACTC+TGG - chr3_1:37672975-37672994 Msa0357090:intron 35.0%
! CGAATTCAAGTTCTCCTATT+TGG - chr3_1:37673001-37673020 Msa0357090:intron 35.0%
TTTAATGCTTCTGCCATTCA+TGG - chr3_1:37673114-37673133 Msa0357090:intron 35.0%
TCTGCCATTCATGGTTTATT+CGG - chr3_1:37673123-37673142 Msa0357090:intron 35.0%
TCTATTGTCAAGAAACTTCC+TGG - chr3_1:37673148-37673167 Msa0357090:intron 35.0%
!!! AAGAAACTTCCTGGTTTTGA+TGG - chr3_1:37673157-37673176 Msa0357090:intron 35.0%
!!! AGAAACTTCCTGGTTTTGAT+GGG - chr3_1:37673158-37673177 Msa0357090:intron 35.0%
TTCCATTCAAGCTTGAAACA+GGG - chr3_1:37673185-37673204 Msa0357090:intron 35.0%
ATGCTTACATATATGAACGG+AGG + chr3_1:37673305-37673324 None:intergenic 35.0%
!! ACGGAGAGAGTATTATATCA+TGG - chr3_1:37673361-37673380 Msa0357090:intron 35.0%
!!! CAATCATTGCTGTTTTGTTG+TGG - chr3_1:37673386-37673405 Msa0357090:intron 35.0%
TCTGTGAAGAAGGAAAAAAG+TGG - chr3_1:37673506-37673525 Msa0357090:intron 35.0%
TGAAGAAGGAAAAAAGTGGT+GGG - chr3_1:37673510-37673529 Msa0357090:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG + chr3_1:37673650-37673669 None:intergenic 35.0%
AGAAAGAAAAAGGAAGAGAG+AGG + chr3_1:37673707-37673726 None:intergenic 35.0%
GAGCACTCTAACATTATGTT+TGG + chr3_1:37673824-37673843 None:intergenic 35.0%
ATCCCACAAGTTATGATTTC+TGG - chr3_1:37674244-37674263 Msa0357090:intron 35.0%
GATCCAGAAATCATAACTTG+TGG + chr3_1:37674250-37674269 None:intergenic 35.0%
!! AAACATGTTTGGTTCTCAAG+AGG - chr3_1:37674378-37674397 Msa0357090:intron 35.0%
! CTTTGTTATGTCCATTTGGT+CGG + chr3_1:37674639-37674658 None:intergenic 35.0%
! ATGCCTTTGTTATGTCCATT+TGG + chr3_1:37674643-37674662 None:intergenic 35.0%
ACACAATACACAGCCATAAT+TGG + chr3_1:37674863-37674882 None:intergenic 35.0%
ATTGTGTAGATACATAGGAG+TGG - chr3_1:37674876-37674895 Msa0357090:intron 35.0%
TTGTGTAGATACATAGGAGT+GGG - chr3_1:37674877-37674896 Msa0357090:intron 35.0%
CCAACGAACCAAAGTAAAAT+TGG + chr3_1:37674967-37674986 None:intergenic 35.0%
!! CCAATTTTACTTTGGTTCGT+TGG - chr3_1:37674964-37674983 Msa0357090:intron 35.0%
!! ATTTTACTTTGGTTCGTTGG+AGG - chr3_1:37674967-37674986 Msa0357090:intron 35.0%
! GTTCTAGGTTGTGATTAAGA+AGG - chr3_1:37675054-37675073 Msa0357090:intron 35.0%
CATTCACATGTTCCTTTGAT+TGG - chr3_1:37675105-37675124 Msa0357090:intron 35.0%
CCAATAAAGTGAATGTCGTA+CGG + chr3_1:37675293-37675312 None:intergenic 35.0%
TACCTGGATTAAGTGATAGT+GGG + chr3_1:37675322-37675341 None:intergenic 35.0%
TTACCTGGATTAAGTGATAG+TGG + chr3_1:37675323-37675342 None:intergenic 35.0%
AGAAAGGACTACTTATTACC+TGG + chr3_1:37675338-37675357 None:intergenic 35.0%
TGTTGTCCAACTCTCAATAT+TGG - chr3_1:37675357-37675376 Msa0357090:intron 35.0%
TCATAGCCAATATTGAGAGT+TGG + chr3_1:37675366-37675385 None:intergenic 35.0%
GGCTATGATGATAAGTCATT+AGG - chr3_1:37675378-37675397 Msa0357090:intron 35.0%
CAGTACGACATTCACTTTAT+TGG - chr3_1:37675508-37675527 Msa0357090:intron 35.0%
TACCTGGATTAAGTGATAGT+GGG + chr3_1:37675322-37675341 None:intergenic 35.0%
TTACCTGGATTAAGTGATAG+TGG + chr3_1:37675323-37675342 None:intergenic 35.0%
! GTGTTTTCATTGAGAGTAGT+TGG + chr3_1:37675584-37675603 None:intergenic 35.0%
TGGGATTAAGTCCTAACAAT+TGG + chr3_1:37675606-37675625 None:intergenic 35.0%
!!! CATCTAATGGACTAGTCTTT+TGG + chr3_1:37675644-37675663 None:intergenic 35.0%
!!! CCCTATTTTGACATCTTGTT+AGG + chr3_1:37675725-37675744 None:intergenic 35.0%
AATGGAAACAACTCTAGTCA+TGG + chr3_1:37675820-37675839 None:intergenic 35.0%
! AGGTAAGGGTATATGTCAAA+TGG + chr3_1:37675838-37675857 None:intergenic 35.0%
!!! TTTTTAAGACTTGGTTCCCA+AGG + chr3_1:37675931-37675950 None:intergenic 35.0%
!!! CAAGAATTTTGTACCGGTTT+AGG - chr3_1:37675961-37675980 Msa0357090:intron 35.0%
TTATACAGGGCCATTAACAA+TGG - chr3_1:37676081-37676100 Msa0357090:CDS 35.0%
AACATATGTGTCCAACCATA+TGG + chr3_1:37676148-37676167 None:intergenic 35.0%
TCTTACTCAGAAACACAAGA+AGG - chr3_1:37676208-37676227 Msa0357090:intron 35.0%
! AATCCATTTTACATAGGTGG+TGG - chr3_1:37676401-37676420 Msa0357090:intron 35.0%
!! TACTTTTTGAACAACAGGAC+CGG + chr3_1:37676447-37676466 None:intergenic 35.0%
ACTAGGCGAAAATGCAATAT+CGG - chr3_1:37676484-37676503 Msa0357090:intron 35.0%
AGTCTCATTTCACAACTTTC+AGG + chr3_1:37676545-37676564 None:intergenic 35.0%
CTAGTATATGTTTGCTCTAG+TGG - chr3_1:37676580-37676599 Msa0357090:intron 35.0%
!!! TGCTAGCTTTTCAAAAACCA+CGG - chr3_1:37676644-37676663 Msa0357090:intron 35.0%
!!! TTAGACTTTTAGAGCGTGTT+TGG + chr3_1:37676713-37676732 None:intergenic 35.0%
TGAATTCTTGCTTGAATTGC+AGG - chr3_1:37676850-37676869 Msa0357090:intron 35.0%
! GTAACCTCATAGAGTTCTTT+TGG + chr3_1:37677092-37677111 None:intergenic 35.0%
TATAATGTTGCAGTCATTGG+AGG - chr3_1:37677235-37677254 Msa0357090:intron 35.0%
GTCATTGGAGGAAAATTGTA+AGG - chr3_1:37677247-37677266 Msa0357090:intron 35.0%
! GAGACACACTTTGTGTTATT+TGG + chr3_1:37677293-37677312 None:intergenic 35.0%
ATCGAACTAGCTGCAAAAAA+AGG + chr3_1:37677405-37677424 None:intergenic 35.0%
ATCATATTCTGGTCGACATA+TGG - chr3_1:37677629-37677648 Msa0357090:intron 35.0%
TCATATTCTGGTCGACATAT+GGG - chr3_1:37677630-37677649 Msa0357090:intron 35.0%
! TTTGAGATGCAACAAGACTT+TGG - chr3_1:37677813-37677832 Msa0357090:intron 35.0%
ATAAATGAGAGCTTGGATGT+TGG + chr3_1:37677893-37677912 None:intergenic 35.0%
AACATCCAAGCTCTCATTTA+TGG - chr3_1:37677892-37677911 Msa0357090:intron 35.0%
ACATCCAAGCTCTCATTTAT+GGG - chr3_1:37677893-37677912 Msa0357090:intron 35.0%
! CAGTGATATATAGGTTTGCT+TGG + chr3_1:37677943-37677962 None:intergenic 35.0%
TTGAAGCAGCAGTGATATAT+AGG + chr3_1:37677952-37677971 None:intergenic 35.0%
AACATTGATGTGTCAAGTAG+GGG - chr3_1:37678559-37678578 Msa0357090:intron 35.0%
TTGCTCAAGTTAAAGGACAA+TGG + chr3_1:37678742-37678761 None:intergenic 35.0%
CTTGTAGATTTCTGTGAATC+TGG + chr3_1:37678935-37678954 None:intergenic 35.0%
AGACCACTACTTAACATATG+TGG - chr3_1:37678963-37678982 Msa0357090:intron 35.0%
CACACGAGAAACTAATAGAA+TGG - chr3_1:37679228-37679247 Msa0357090:intron 35.0%
CATTTAAGCCTATGTCTTTG+TGG - chr3_1:37679444-37679463 Msa0357090:intron 35.0%
! CGTTTACCAATGATGGAAAT+TGG - chr3_1:37679477-37679496 Msa0357090:intron 35.0%
ATGGTCAAGGTTAAGGTTAC+TGG + chr3_1:37672810-37672829 None:intergenic 40.0%
GTGAGAAATGGTCAAGGTTA+AGG + chr3_1:37672817-37672836 None:intergenic 40.0%
AGATGCAGCTGTATTGTGTT+AGG - chr3_1:37673088-37673107 Msa0357090:intron 40.0%
CTGCCATTCATGGTTTATTC+GGG - chr3_1:37673124-37673143 Msa0357090:intron 40.0%
GAACCCGAATAAACCATGAA+TGG + chr3_1:37673130-37673149 None:intergenic 40.0%
!!! GAAACTTCCTGGTTTTGATG+GGG - chr3_1:37673159-37673178 Msa0357090:intron 40.0%
CTTCCATTCAAGCTTGAAAC+AGG - chr3_1:37673184-37673203 Msa0357090:intron 40.0%
! AAGGTACTTAGATACGGGAA+CGG - chr3_1:37673342-37673361 Msa0357090:CDS 40.0%
!!! CATTGCTGTTTTGTTGTGGT+TGG - chr3_1:37673390-37673409 Msa0357090:intron 40.0%
TCTTCGCATATCTGTGAAGA+AGG - chr3_1:37673496-37673515 Msa0357090:intron 40.0%
GTGAAGAAGGAAAAAAGTGG+TGG - chr3_1:37673509-37673528 Msa0357090:intron 40.0%
AAGAGAGATGAGATTGTGGT+GGG + chr3_1:37673537-37673556 None:intergenic 40.0%
AAGGAAGAGAGATGAGATTG+TGG + chr3_1:37673541-37673560 None:intergenic 40.0%
TCTCCAACTTCTCCCATATT+TGG - chr3_1:37673599-37673618 Msa0357090:intron 40.0%
AAGCCAAATATGGGAGAAGT+TGG + chr3_1:37673605-37673624 None:intergenic 40.0%
GTGTGGTTCAAGAAAGAGAA+AGG - chr3_1:37674329-37674348 Msa0357090:intron 40.0%
!! ATGTTTGGTTCTCAAGAGGA+GGG - chr3_1:37674382-37674401 Msa0357090:intron 40.0%
CGACCAAATGGACATAACAA+AGG - chr3_1:37674637-37674656 Msa0357090:CDS 40.0%
CCGTACGACATTCACTTTAT+TGG - chr3_1:37675290-37675309 Msa0357090:intron 40.0%
TTGAGAGTTGGACAACAGAA+AGG + chr3_1:37675354-37675373 None:intergenic 40.0%
TACGTCTTCATGGCAATGTT+AGG + chr3_1:37675463-37675482 None:intergenic 40.0%
TTAGGAGTTCTACGTCTTCA+TGG + chr3_1:37675473-37675492 None:intergenic 40.0%
AGAAAGGACTACGTATTACC+TGG + chr3_1:37675556-37675575 None:intergenic 40.0%
AGAGTAGTTGGACAACAGAA+AGG + chr3_1:37675572-37675591 None:intergenic 40.0%
!!! ATGGACTAGTCTTTTGGGTT+AGG + chr3_1:37675638-37675657 None:intergenic 40.0%
CATGAGACTCTCTCATCTAA+TGG + chr3_1:37675657-37675676 None:intergenic 40.0%
GGAAAAAGGACCTGGTAATT+TGG + chr3_1:37675910-37675929 None:intergenic 40.0%
! ATTACCAGGTCCTTTTTCCT+TGG - chr3_1:37675911-37675930 Msa0357090:CDS 40.0%
! TTACCAGGTCCTTTTTCCTT+GGG - chr3_1:37675912-37675931 Msa0357090:CDS 40.0%
ACAATGGATGACGATTACAG+TGG - chr3_1:37676097-37676116 Msa0357090:CDS 40.0%
ATAGATATACCAGTTGGGAC+TGG - chr3_1:37676181-37676200 Msa0357090:CDS 40.0%
TAAGAAAAACCAGTCCCAAC+TGG + chr3_1:37676193-37676212 None:intergenic 40.0%
!! GTTTTTGAAAAGCTAGCAGC+TGG + chr3_1:37676642-37676661 None:intergenic 40.0%
! TTAGAGCGTGTTTGGTTTAG+CGG + chr3_1:37676705-37676724 None:intergenic 40.0%
! CGAATTATCTGGTTTACAGC+AGG + chr3_1:37677472-37677491 None:intergenic 40.0%
GAACAGGTTGTCGAATTATC+TGG + chr3_1:37677483-37677502 None:intergenic 40.0%
AAACGATGAAAATGTGCGCA+AGG - chr3_1:37677654-37677673 Msa0357090:intron 40.0%
GCGATAATATTCTACAGCAC+TGG + chr3_1:37677857-37677876 None:intergenic 40.0%
GTTACCCATAAATGAGAGCT+TGG + chr3_1:37677900-37677919 None:intergenic 40.0%
! TACAGGTGTTAGTTTCGTGT+TGG + chr3_1:37678023-37678042 None:intergenic 40.0%
! GTGTTAGTTTCGTGTTCTAC+AGG + chr3_1:37678040-37678059 None:intergenic 40.0%
CAAGATTGTGTACTCAGTTG+TGG + chr3_1:37678263-37678282 None:intergenic 40.0%
CACAACTGAGTACACAATCT+TGG - chr3_1:37678261-37678280 Msa0357090:intron 40.0%
TACATGATAAATGGCGTGCA+TGG - chr3_1:37678306-37678325 Msa0357090:intron 40.0%
TTTGTTGAAGGTCAAGTAGC+CGG - chr3_1:37678329-37678348 Msa0357090:intron 40.0%
! CACGATTTTGTCCTTTGCAA+AGG + chr3_1:37678480-37678499 None:intergenic 40.0%
TTGCAAAGGACAAAATCGTG+AGG - chr3_1:37678480-37678499 Msa0357090:intron 40.0%
TGCAAAGGACAAAATCGTGA+GGG - chr3_1:37678481-37678500 Msa0357090:intron 40.0%
GACAATATCTCGTACACTTG+TGG - chr3_1:37678524-37678543 Msa0357090:intron 40.0%
TATGCTATAGTCGAGGCTAA+GGG + chr3_1:37678622-37678641 None:intergenic 40.0%
ATATGCTATAGTCGAGGCTA+AGG + chr3_1:37678623-37678642 None:intergenic 40.0%
! GACGAGTTTGCTCAAGTTAA+AGG + chr3_1:37678749-37678768 None:intergenic 40.0%
CAGCCACATATGTTAAGTAG+TGG + chr3_1:37678969-37678988 None:intergenic 40.0%
CTTAACATATGTGGCTGTGA+AGG - chr3_1:37678972-37678991 Msa0357090:intron 40.0%
ATTCTCTCACGTACCCTATT+TGG - chr3_1:37679097-37679116 Msa0357090:intron 40.0%
!! CGTATTTTGAAGGGTTTTGG+TGG - chr3_1:37679164-37679183 Msa0357090:CDS 40.0%
CAAGACATAGTTGCTAGGAA+TGG + chr3_1:37679534-37679553 None:intergenic 40.0%
TTCCTAGCAACTATGTCTTG+TGG - chr3_1:37679534-37679553 Msa0357090:five_prime_UTR 40.0%
TTCCACAAGACATAGTTGCT+AGG + chr3_1:37679539-37679558 None:intergenic 40.0%
TCATCCGGTTCTCAGTAGAA+AGG - chr3_1:37672911-37672930 Msa0357090:CDS 45.0%
CATCCGGTTCTCAGTAGAAA+GGG - chr3_1:37672912-37672931 Msa0357090:CDS 45.0%
TTCCGGTTGTGTAGTGTGAT+GGG - chr3_1:37673061-37673080 Msa0357090:intron 45.0%
AACCCATCACACTACACAAC+CGG + chr3_1:37673066-37673085 None:intergenic 45.0%
CACCCTGTTTCAAGCTTGAA+TGG + chr3_1:37673190-37673209 None:intergenic 45.0%
GAAGAGAGATGAGATTGTGG+TGG + chr3_1:37673538-37673557 None:intergenic 45.0%
!! CATGTTTGGTTCTCAAGAGG+AGG - chr3_1:37674381-37674400 Msa0357090:intron 45.0%
!! TGTTTGGTTCTCAAGAGGAG+GGG - chr3_1:37674383-37674402 Msa0357090:intron 45.0%
! ATTTGGTCGGAGGATTTTGG+AGG + chr3_1:37674626-37674645 None:intergenic 45.0%
TCCAAAATCCTCCGACCAAA+TGG - chr3_1:37674625-37674644 Msa0357090:CDS 45.0%
! TCCATTTGGTCGGAGGATTT+TGG + chr3_1:37674629-37674648 None:intergenic 45.0%
TGTTATGTCCATTTGGTCGG+AGG + chr3_1:37674636-37674655 None:intergenic 45.0%
TGTTCCACGATTAAGGGAGT+AGG - chr3_1:37674728-37674747 Msa0357090:intron 45.0%
GTTCCACGATTAAGGGAGTA+GGG - chr3_1:37674729-37674748 Msa0357090:intron 45.0%
ATACCCTACTCCCTTAATCG+TGG + chr3_1:37674735-37674754 None:intergenic 45.0%
AGATACATAGGAGTGGGAGA+AGG - chr3_1:37674883-37674902 Msa0357090:intron 45.0%
CATTAGGTGATAGAGCCTCA+TGG - chr3_1:37675204-37675223 Msa0357090:CDS 45.0%
GACGTGATACATATGCCATG+AGG + chr3_1:37675222-37675241 None:intergenic 45.0%
CACCCACTATCACTTAATCC+AGG - chr3_1:37675317-37675336 Msa0357090:intron 45.0%
CATTAGGTGATAGAGCCTCA+TGG - chr3_1:37675204-37675223 Msa0357090:CDS 45.0%
GACGTGATACTTATGCCATG+AGG + chr3_1:37675412-37675431 None:intergenic 45.0%
CTGCTCTTCATGGCAATGTT+AGG + chr3_1:37675491-37675510 None:intergenic 45.0%
GAATGTCGTACTGCTCTTCA+TGG + chr3_1:37675501-37675520 None:intergenic 45.0%
CACCCACTATCACTTAATCC+AGG - chr3_1:37675317-37675336 Msa0357090:intron 45.0%
! TTGGGTTAGGCTCTGTTCAT+GGG + chr3_1:37675625-37675644 None:intergenic 45.0%
! TTTGGGTTAGGCTCTGTTCA+TGG + chr3_1:37675626-37675645 None:intergenic 45.0%
! GACTTGGTTCCCAAGGAAAA+AGG + chr3_1:37675924-37675943 None:intergenic 45.0%
ACTATAGCAGTGACACACTG+TGG - chr3_1:37676233-37676252 Msa0357090:intron 45.0%
CTATAGCAGTGACACACTGT+GGG - chr3_1:37676234-37676253 Msa0357090:intron 45.0%
GAGCCACCACCTATGTAAAA+TGG + chr3_1:37676407-37676426 None:intergenic 45.0%
! ATAGGTGGTGGCTCATATTC+AGG - chr3_1:37676413-37676432 Msa0357090:intron 45.0%
GCTTATACAGGTCAACAGCA+GGG + chr3_1:37677025-37677044 None:intergenic 45.0%
TGCTTATACAGGTCAACAGC+AGG + chr3_1:37677026-37677045 None:intergenic 45.0%
TTGTTGAAGGTCAAGTAGCC+GGG - chr3_1:37678330-37678349 Msa0357090:intron 45.0%
! CCTTTGCAAAGGCATGTCAT+AGG + chr3_1:37678469-37678488 None:intergenic 45.0%
CCTATGACATGCCTTTGCAA+AGG - chr3_1:37678466-37678485 Msa0357090:intron 45.0%
GTACGAGATATTGTCCGCTT+TGG + chr3_1:37678519-37678538 None:intergenic 45.0%
CTCGTACACTTGTGGATTTG+AGG - chr3_1:37678532-37678551 Msa0357090:intron 45.0%
ATGCTATAGTCGAGGCTAAG+GGG + chr3_1:37678621-37678640 None:intergenic 45.0%
TAGGGTACGTGAGAGAATAG+TGG + chr3_1:37679095-37679114 None:intergenic 45.0%
TTAGTTTCTCGTGTGCCCTA+TGG + chr3_1:37679223-37679242 None:intergenic 45.0%
AGCACCCTGTAGAATGACAA+TGG + chr3_1:37679304-37679323 None:intergenic 45.0%
ATTGTCATTCTACAGGGTGC+TGG - chr3_1:37679303-37679322 Msa0357090:intron 45.0%
GGCTCATACATTTAAGCCCA+AGG - chr3_1:37679332-37679351 Msa0357090:intron 45.0%
GAGCCCTTTCTACTGAGAAC+CGG + chr3_1:37672918-37672937 None:intergenic 50.0%
GGTTCTCAGTAGAAAGGGCT+CGG - chr3_1:37672917-37672936 Msa0357090:CDS 50.0%
CTTCCGGTTGTGTAGTGTGA+TGG - chr3_1:37673060-37673079 Msa0357090:intron 50.0%
!! GGTTGTGTAGTGTGATGGGT+TGG - chr3_1:37673065-37673084 Msa0357090:intron 50.0%
GGAAGTTCCCCATCAAAACC+AGG + chr3_1:37673169-37673188 None:intergenic 50.0%
TGGATCCGTCCTTGATGTGA+GGG - chr3_1:37674264-37674283 Msa0357090:intron 50.0%
TGGGGGAAGCAATAAACGAG+TGG - chr3_1:37674549-37674568 Msa0357090:intron 50.0%
!! GGATTTTGGAGGAGTGAGGA+GGG + chr3_1:37674615-37674634 None:intergenic 50.0%
!! AGGATTTTGGAGGAGTGAGG+AGG + chr3_1:37674616-37674635 None:intergenic 50.0%
! GCTGAAAGTGCAGAACATCC+TGG + chr3_1:37674994-37675013 None:intergenic 50.0%
CGGCTCTTCATGGCAATGTT+AGG + chr3_1:37675273-37675292 None:intergenic 50.0%
GAATGTCGTACGGCTCTTCA+TGG + chr3_1:37675283-37675302 None:intergenic 50.0%
! CTGGTAATTTGGAGTCTGGC+CGG + chr3_1:37675899-37675918 None:intergenic 50.0%
! GGACCTGGTAATTTGGAGTC+TGG + chr3_1:37675903-37675922 None:intergenic 50.0%
GTTCCCAAGGAAAAAGGACC+TGG + chr3_1:37675918-37675937 None:intergenic 50.0%
AAGCTAGCAGCTGGAGAGTT+TGG + chr3_1:37676633-37676652 None:intergenic 50.0%
! TGTTTGGTTTAGCGGCAAGC+AGG + chr3_1:37676697-37676716 None:intergenic 50.0%
! GCAGGTGTTGTGATACAGAG+AGG + chr3_1:37677454-37677473 None:intergenic 50.0%
CAAGGCTCTTCATGTCAGAG+AGG - chr3_1:37677672-37677691 Msa0357090:intron 50.0%
!! TGGCGTGCATGGTTTGTTGA+AGG - chr3_1:37678317-37678336 Msa0357090:intron 50.0%
CTGGATCCGTCCTTGATGTG+AGG - chr3_1:37674263-37674282 Msa0357090:intron 55.0%
GGATCCGTCCTTGATGTGAG+GGG - chr3_1:37674265-37674284 Msa0357090:intron 55.0%
! TTGGTTCTCAAGAGGAGGGG+AGG - chr3_1:37674386-37674405 Msa0357090:intron 55.0%
!! CGGAGGATTTTGGAGGAGTG+AGG + chr3_1:37674619-37674638 None:intergenic 55.0%
AGGAGTGGGAGAAGGAGCAA+AGG - chr3_1:37674891-37674910 Msa0357090:intron 55.0%
! CTTTGGTTCGTTGGAGGTCC+AGG - chr3_1:37674973-37674992 Msa0357090:CDS 55.0%
CGGCCAGACTCCAAATTACC+AGG - chr3_1:37675897-37675916 Msa0357090:CDS 55.0%
TAGCAGTGACACACTGTGGG+TGG - chr3_1:37676237-37676256 Msa0357090:intron 55.0%
GAGAGCTTGGATGTTGGCGT+TGG + chr3_1:37677887-37677906 None:intergenic 55.0%
GGCTCACGCAAGATCCAAAG+CGG - chr3_1:37678502-37678521 Msa0357090:intron 55.0%
AAGGGTCTTGCCATCGAGTG+TGG + chr3_1:37678595-37678614 None:intergenic 55.0%
GTCGAGGCTAAGGGGCTAAA+GGG + chr3_1:37678613-37678632 None:intergenic 55.0%
AGTCGAGGCTAAGGGGCTAA+AGG + chr3_1:37678614-37678633 None:intergenic 55.0%
!! TCTACAGGGTGCTGGACATG+TGG - chr3_1:37679311-37679330 Msa0357090:intron 55.0%
CCGTCCCCTCACATCAAGGA+CGG + chr3_1:37674272-37674291 None:intergenic 60.0%
CCGTCCTTGATGTGAGGGGA+CGG - chr3_1:37674269-37674288 Msa0357090:intron 60.0%
CGTCCTTGATGTGAGGGGAC+GGG - chr3_1:37674270-37674289 Msa0357090:intron 60.0%
TCTCCCGTCCCCTCACATCA+AGG + chr3_1:37674276-37674295 None:intergenic 60.0%
TTGATGTGAGGGGACGGGAG+AGG - chr3_1:37674275-37674294 Msa0357090:intron 60.0%
TCAACCCACGCCACACTCGA+TGG - chr3_1:37678582-37678601 Msa0357090:intron 60.0%
CTTGCCATCGAGTGTGGCGT+GGG + chr3_1:37678589-37678608 None:intergenic 60.0%
TCTTGCCATCGAGTGTGGCG+TGG + chr3_1:37678590-37678609 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 37672675 37679632 37672675 ID=Msa0357090;Name=Msa0357090
chr3_1 mRNA 37672675 37679632 37672675 ID=Msa0357090-mRNA-1;Parent=Msa0357090;Name=Msa0357090-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|1|1|1|0.85|0.8|15|231|453
chr3_1 exon 37672675 37672989 37672675 ID=Msa0357090-mRNA-1:exon:6888;Parent=Msa0357090-mRNA-1
chr3_1 exon 37673314 37673371 37673314 ID=Msa0357090-mRNA-1:exon:6887;Parent=Msa0357090-mRNA-1
chr3_1 exon 37673956 37674069 37673956 ID=Msa0357090-mRNA-1:exon:6886;Parent=Msa0357090-mRNA-1
chr3_1 exon 37674393 37674511 37674393 ID=Msa0357090-mRNA-1:exon:6885;Parent=Msa0357090-mRNA-1
chr3_1 exon 37674614 37674685 37674614 ID=Msa0357090-mRNA-1:exon:6884;Parent=Msa0357090-mRNA-1
chr3_1 exon 37674779 37674892 37674779 ID=Msa0357090-mRNA-1:exon:6883;Parent=Msa0357090-mRNA-1
chr3_1 exon 37674973 37675059 37674973 ID=Msa0357090-mRNA-1:exon:6882;Parent=Msa0357090-mRNA-1
chr3_1 exon 37675201 37675302 37675201 ID=Msa0357090-mRNA-1:exon:6881;Parent=Msa0357090-mRNA-1
chr3_1 exon 37675398 37675435 37675398 ID=Msa0357090-mRNA-1:exon:6880;Parent=Msa0357090-mRNA-1
chr3_1 exon 37675834 37675936 37675834 ID=Msa0357090-mRNA-1:exon:6879;Parent=Msa0357090-mRNA-1
chr3_1 exon 37676022 37676218 37676022 ID=Msa0357090-mRNA-1:exon:6878;Parent=Msa0357090-mRNA-1
chr3_1 exon 37677277 37677422 37677277 ID=Msa0357090-mRNA-1:exon:6877;Parent=Msa0357090-mRNA-1
chr3_1 exon 37679101 37679232 37679101 ID=Msa0357090-mRNA-1:exon:6876;Parent=Msa0357090-mRNA-1
chr3_1 exon 37679449 37679492 37679449 ID=Msa0357090-mRNA-1:exon:6875;Parent=Msa0357090-mRNA-1
chr3_1 exon 37679514 37679632 37679514 ID=Msa0357090-mRNA-1:exon:6874;Parent=Msa0357090-mRNA-1
chr3_1 five_prime_UTR 37679514 37679632 37679514 ID=Msa0357090-mRNA-1:five_prime_utr;Parent=Msa0357090-mRNA-1
chr3_1 five_prime_UTR 37679449 37679492 37679449 ID=Msa0357090-mRNA-1:five_prime_utr;Parent=Msa0357090-mRNA-1
chr3_1 five_prime_UTR 37679229 37679232 37679229 ID=Msa0357090-mRNA-1:five_prime_utr;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37679101 37679228 37679101 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37677277 37677422 37677277 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37676022 37676218 37676022 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37675834 37675936 37675834 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37675398 37675435 37675398 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37675201 37675302 37675201 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37674973 37675059 37674973 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37674779 37674892 37674779 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37674614 37674685 37674614 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37674393 37674511 37674393 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37673956 37674069 37673956 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37673314 37673371 37673314 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 CDS 37672906 37672989 37672906 ID=Msa0357090-mRNA-1:cds;Parent=Msa0357090-mRNA-1
chr3_1 three_prime_UTR 37672675 37672905 37672675 ID=Msa0357090-mRNA-1:three_prime_utr;Parent=Msa0357090-mRNA-1
Gene Sequence

>Msa0357090

ATGGGTTGGAGATGCAGCTGTATTGTGTTAGGTACTTTAATGCTTCTGCCATTCATGGTTTATTCGGGTTCTATTGTCAAGAAACTTCCTGGTTTTGATGGGGAACTTCCATTCAAGCTTGAAACAGGATACATAGGAGTGGGAGAAGGAGCAAAGGTGCAAATGTTTTACTATTTTGTGGAGTCCCAAAGAAATCCCTTTATTGATCCAATTTTACTTTGGTTCGTTGGAGGTCCAGGATGTTCTGCACTTTCAGCATTCTTTTTCGAAAATGGGCCATTAACAATGGATGACGATTACAGTGGAATCCTTCCAAAGCTTAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATGTACATAGATATACCAGTTGGGACTGGTTTTTCTTACTCAGAAACACAAGAAGGCTACTATAGCAGTGACACACTGTGGGTGGATCATACATATTCTTTTTTACAAAAGTGGATTATTGATCATCCAAAGTTTAGCTCAAATCCATTTTACATAGGTGGTGGCTCATATTCAGGATTTACTACCGGTCCTGTTGTTCAAAAAGTATATGAAGGATACATAGCAAGACATAAGCCACATATAAACATCAAAGGTTATGTGCTTGCAAGCCCTGCTGTTGACCTGTATAAGCATATAAACGTGAAAGTTTTATATGCATACCATATGAATCTTATACCAAAAGAACTCTATGAGTCATTGGAGGAAAATTGTAAGGGTGATTATGTAAACATTGATCCAAATAACACAAAGTGTGTCTCAGATTTTGAAGCTTATTCTGAGCTAGTTCGATATATAAACGAACAACAAATTTTAGAACCTCTCTGTATCACAACACCTGCTGTAAACCAGATAATTCGACAACCTGTTCAAGATGATCAAGAATTTTGGTGTAGAAGTTATTATCATATTCTGGTCGACATATGGGCAAACGATGAAAATGTGCGCAAGGCTCTTCATGTCAGAGAGGGAACTAAGGGGGAGTTTTTGAGATGCAACAAGACTTTGGCATACACACAAACACTAACCAGTGCTGTAGAATATTATCGCAATCTCACCAACGCCAACATCCAAGCTCTCATTTATGGTTCTGATCTTGACTTTTCTGTACCACAACTGAGTACACAATCTTGGATCAAGTCATTCAACATGAGCATACATGATAAATGGCGTGCATGGTTTGTTGAAGGTCAAGTAGCCGGATTCACAGAAATCTACAAGATGAAAGAAGACCACTACTTAACATATGTGGCTGTGAAGGGTGCTGGACATGTGGCTCATACATTTAAGCCCAAGGAAGTTTATAATATGATCAAGAGATGGTTTTCATTTTCTCTTATCTAA
Protein sequence

>Msa0357090

MGWRCSCIVLGTLMLLPFMVYSGSIVKKLPGFDGELPFKLETGYIGVGEGAKVQMFYYFVESQRNPFIDPILLWFVGGPGCSALSAFFFENGPLTMDDDYSGILPKLKLNPYGWTHMLNMMYIDIPVGTGFSYSETQEGYYSSDTLWVDHTYSFLQKWIIDHPKFSSNPFYIGGGSYSGFTTGPVVQKVYEGYIARHKPHINIKGYVLASPAVDLYKHINVKVLYAYHMNLIPKELYESLEENCKGDYVNIDPNNTKCVSDFEAYSELVRYINEQQILEPLCITTPAVNQIIRQPVQDDQEFWCRSYYHILVDIWANDENVRKALHVREGTKGEFLRCNKTLAYTQTLTSAVEYYRNLTNANIQALIYGSDLDFSVPQLSTQSWIKSFNMSIHDKWRAWFVEGQVAGFTEIYKMKEDHYLTYVAVKGAGHVAHTFKPKEVYNMIKRWFSFSLI*