AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113200 MtrunA17_Chr7g0249081 97.674 258 5 1 1 258 1 257 0.0 517
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113200 AT1G79790.1 67.677 198 64 0 57 254 45 242 1.45e-102 298
Msa1113200 AT1G79790.2 60.090 223 64 1 57 254 45 267 7.98e-97 285
Msa1113200 AT1G79790.4 52.027 148 46 1 132 254 1 148 1.71e-49 160

Find 44 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGTTTACACGGTGAAAA+AGG 0.177329 7_3:+59408473 Msa1113200:three_prime_UTR
TCTGGAATGTCTTTGTAAAA+AGG 0.218541 7_3:-59404733 None:intergenic
GATGGTTTAAGTCTATATTT+TGG 0.243049 7_3:+59408559 Msa1113200:three_prime_UTR
AAAGACATTCCAAAGAATTC+TGG 0.243321 7_3:-59404751 None:intergenic
AAAGACATTCCAGAATTCTT+TGG 0.273979 7_3:+59404742 Msa1113200:CDS
TTTCACCGTGTAAACGAAAT+TGG 0.283521 7_3:-59408469 None:intergenic
AGCTATCAAAATATTTATCT+TGG 0.295092 7_3:+59407740 Msa1113200:CDS
TATGAATATGGATATGGATA+TGG 0.308867 7_3:-59404458 None:intergenic
AGCTCACTTTAATATGAATA+TGG 0.312650 7_3:-59404470 None:intergenic
CTTTAATATGAATATGGATA+TGG 0.321119 7_3:-59404464 None:intergenic
TAATTGAGATTTAAAAGAAT+TGG 0.334473 7_3:+59408584 Msa1113200:three_prime_UTR
CTTAAAACTTGTATGAGAAA+TGG 0.339472 7_3:+59407527 Msa1113200:CDS
TCTATGAAAATACAATATTC+TGG 0.343770 7_3:-59408020 None:intergenic
AATGGGTATTCATACATAGA+AGG 0.378988 7_3:+59407545 Msa1113200:CDS
TTTAAGTAATTTGTTGTTGT+TGG 0.380517 7_3:-59404604 None:intergenic
ACCGGATACTGAATTCTATA+AGG 0.381928 7_3:+59407971 Msa1113200:CDS
ACAATATACAATTAAGAATC+TGG 0.398877 7_3:-59408502 None:intergenic
TTAAAACTTGTATGAGAAAT+GGG 0.400962 7_3:+59407528 Msa1113200:CDS
ATCATGGATTGAATTTGAAA+AGG 0.404815 7_3:+59404804 Msa1113200:CDS
TTTATTGTGTTTCAGGAAAG+AGG 0.415252 7_3:+59407946 Msa1113200:intron
ATGATGTCGAATAACAGAAT+TGG 0.416416 7_3:-59404691 None:intergenic
GAGAATGGTGTTGTAACATT+TGG 0.430636 7_3:-59404541 None:intergenic
TCATGGATTGAATTTGAAAA+GGG 0.431737 7_3:+59404805 Msa1113200:CDS
AAGTAATTTGTTGTTGTTGG+TGG 0.431845 7_3:-59404601 None:intergenic
AATTCTGTTATTCGACATCA+TGG 0.432572 7_3:+59404693 Msa1113200:CDS
TCCTTATAGAATTCAGTATC+CGG 0.443431 7_3:-59407972 None:intergenic
GCGCGAAGAACTGTCATTGA+TGG 0.454275 7_3:+59408387 Msa1113200:CDS
TGCAGGCAGCAGCTGAAGTT+GGG 0.455154 7_3:+59408329 Msa1113200:CDS
GTGCAGGCAGCAGCTGAAGT+TGG 0.459723 7_3:+59408328 Msa1113200:CDS
AGCAGCTGAAGTTGGGATCA+AGG 0.467596 7_3:+59408336 Msa1113200:CDS
CGCGAAGAACTGTCATTGAT+GGG 0.472416 7_3:+59408388 Msa1113200:CDS
TCAAATTCAATCCATGATGT+TGG 0.476853 7_3:-59404799 None:intergenic
ATTGAGCTTTGTTAAAATGA+TGG 0.477570 7_3:+59408541 Msa1113200:three_prime_UTR
AATTCTATAAGGAAGTTGTC+AGG 0.516039 7_3:+59407982 Msa1113200:CDS
ATGGGTATTCATACATAGAA+GGG 0.518947 7_3:+59407546 Msa1113200:CDS
TGTTTCAGGAAAGAGGAAAC+CGG 0.520264 7_3:+59407953 Msa1113200:intron
TGAAAAGGGTCTTATTGATG+AGG 0.538520 7_3:+59404819 Msa1113200:CDS
ATTGCAAACATCCAACATCA+TGG 0.556457 7_3:+59404788 Msa1113200:CDS
ATACACCAATTTCGTTTACA+CGG 0.566029 7_3:+59408464 Msa1113200:three_prime_UTR
GCAGCTGAAGTTGGGATCAA+GGG 0.568479 7_3:+59408337 Msa1113200:CDS
TGGATTGAGAATGAAGAGAA+TGG 0.573226 7_3:-59404556 None:intergenic
GCGAAGAACTGTCATTGATG+GGG 0.637374 7_3:+59408389 Msa1113200:CDS
TGGGTATTCATACATAGAAG+GGG 0.656968 7_3:+59407547 Msa1113200:CDS
CGAAGAACTGTCATTGATGG+GGG 0.683926 7_3:+59408390 Msa1113200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATAAACAATTTTTGT+GGG - chr7_3:59406840-59406859 None:intergenic 10.0%
!! TTTATACATAACATGAAAAA+GGG - chr7_3:59404895-59404914 None:intergenic 15.0%
!! TTATGAATTTAAATTGCAAT+TGG + chr7_3:59404933-59404952 Msa1113200:intron 15.0%
!! TATGAATTTAAATTGCAATT+GGG + chr7_3:59404934-59404953 Msa1113200:intron 15.0%
!! TAATATTAATCTTGATATTG+CGG - chr7_3:59405756-59405775 None:intergenic 15.0%
!!! ATTTATAAACAATTTTTGTG+GGG - chr7_3:59406839-59406858 None:intergenic 15.0%
!!! CTATTTATAAACAATTTTTG+TGG - chr7_3:59406841-59406860 None:intergenic 15.0%
!! ATTGTTTATAAATAGATTCA+AGG + chr7_3:59406846-59406865 Msa1113200:intron 15.0%
!! TTGTTTATAAATAGATTCAA+GGG + chr7_3:59406847-59406866 Msa1113200:intron 15.0%
!! CAAAAAATCAATCATTTAAA+AGG - chr7_3:59407133-59407152 None:intergenic 15.0%
!! TTATGATATTATATCCTAAT+TGG + chr7_3:59407836-59407855 Msa1113200:intron 15.0%
!! TAATTGAGATTTAAAAGAAT+TGG + chr7_3:59408584-59408603 Msa1113200:three_prime_UTR 15.0%
!! CTTTAATATGAATATGGATA+TGG - chr7_3:59404467-59404486 None:intergenic 20.0%
!!! TTGTTTTCATCTAAATTCAT+GGG - chr7_3:59404504-59404523 None:intergenic 20.0%
!!! ATTGTTTTCATCTAAATTCA+TGG - chr7_3:59404505-59404524 None:intergenic 20.0%
!!! TTTAAGTAATTTGTTGTTGT+TGG - chr7_3:59404607-59404626 None:intergenic 20.0%
!! CTTTATACATAACATGAAAA+AGG - chr7_3:59404896-59404915 None:intergenic 20.0%
!! ATGAATTTAAATTGCAATTG+GGG + chr7_3:59404935-59404954 Msa1113200:intron 20.0%
!!! AATCTGTTTTATTTTCTTTC+AGG + chr7_3:59405080-59405099 Msa1113200:intron 20.0%
!! GTTAAAAAATGAAGATGATT+TGG + chr7_3:59405293-59405312 Msa1113200:intron 20.0%
!!! AACACTTTTTTAGCAAAAAT+GGG - chr7_3:59405398-59405417 None:intergenic 20.0%
!!! TAACACTTTTTTAGCAAAAA+TGG - chr7_3:59405399-59405418 None:intergenic 20.0%
!!! TTTTTGCTAAAAAAGTGTTA+TGG + chr7_3:59405399-59405418 Msa1113200:intron 20.0%
!!! TTCATTTCTACAACTATTTT+GGG - chr7_3:59405509-59405528 None:intergenic 20.0%
!!! TTTCATTTCTACAACTATTT+TGG - chr7_3:59405510-59405529 None:intergenic 20.0%
!! AATAAGTTCATTAAAGTTTG+TGG - chr7_3:59405673-59405692 None:intergenic 20.0%
!! CAATTCTTAGATTTATTTCA+AGG - chr7_3:59405867-59405886 None:intergenic 20.0%
!! TTCCAAACTTCTTAATATAA+TGG + chr7_3:59406144-59406163 Msa1113200:intron 20.0%
!! TACCATTATATTAAGAAGTT+TGG - chr7_3:59406149-59406168 None:intergenic 20.0%
!! ATAAATGAGAAATTTGTACT+CGG - chr7_3:59406351-59406370 None:intergenic 20.0%
!!! TGTAAATGGTAATTATGTTT+TGG + chr7_3:59407238-59407257 Msa1113200:intron 20.0%
!!! GTAAATGGTAATTATGTTTT+GGG + chr7_3:59407239-59407258 Msa1113200:intron 20.0%
!! ATAAAGACAACAGTATATAT+TGG - chr7_3:59407323-59407342 None:intergenic 20.0%
!!! TTTTATGTGCTAATTGAAAT+AGG + chr7_3:59407368-59407387 Msa1113200:intron 20.0%
!! TTAAAACTTGTATGAGAAAT+GGG + chr7_3:59407528-59407547 Msa1113200:CDS 20.0%
!!! CTCAAAGTTATTTTTCTTTA+AGG - chr7_3:59407591-59407610 None:intergenic 20.0%
!!! CTTTTACTAATTATCCTATA+TGG + chr7_3:59407618-59407637 Msa1113200:CDS 20.0%
!!! AATTCATTTTCTTACCATAT+AGG - chr7_3:59407635-59407654 None:intergenic 20.0%
!! AGCTATCAAAATATTTATCT+TGG + chr7_3:59407740-59407759 Msa1113200:CDS 20.0%
!! TCTATGAAAATACAATATTC+TGG - chr7_3:59408023-59408042 None:intergenic 20.0%
!! ATAAATTGTAAGTGATATCA+TGG - chr7_3:59408095-59408114 None:intergenic 20.0%
!!! ATTTCATTTGAATTTGCTAA+TGG + chr7_3:59408234-59408253 Msa1113200:intron 20.0%
!! TTATGATAAACTACTTTGAT+AGG - chr7_3:59408264-59408283 None:intergenic 20.0%
!! TATCAAAGTAGTTTATCATA+AGG + chr7_3:59408263-59408282 Msa1113200:intron 20.0%
!! ACAATATACAATTAAGAATC+TGG - chr7_3:59408505-59408524 None:intergenic 20.0%
! TATGAATATGGATATGGATA+TGG - chr7_3:59404461-59404480 None:intergenic 25.0%
! AGCTCACTTTAATATGAATA+TGG - chr7_3:59404473-59404492 None:intergenic 25.0%
! GATGAAAACAATTGCAAAAA+TGG + chr7_3:59404513-59404532 Msa1113200:exon 25.0%
!! AGTTTTCTGTTTGTGTTTTT+GGG - chr7_3:59404670-59404689 None:intergenic 25.0%
!! AAGTTTTCTGTTTGTGTTTT+TGG - chr7_3:59404671-59404690 None:intergenic 25.0%
!! ATCATGGATTGAATTTGAAA+AGG + chr7_3:59404804-59404823 Msa1113200:CDS 25.0%
!! TCATGGATTGAATTTGAAAA+GGG + chr7_3:59404805-59404824 Msa1113200:CDS 25.0%
!!! AAAAGTTCTAAGAAACTTGA+AGG - chr7_3:59405004-59405023 None:intergenic 25.0%
!!! GCTAGAAAGAAAGTTTTTTA+AGG + chr7_3:59405107-59405126 Msa1113200:CDS 25.0%
!!! GAAAGAAAGTTTTTTAAGGA+TGG + chr7_3:59405111-59405130 Msa1113200:CDS 25.0%
!!! AAAGTTTTTTAAGGATGGAA+GGG + chr7_3:59405116-59405135 Msa1113200:CDS 25.0%
!! AAAAAATGAAGATGATTTGG+AGG + chr7_3:59405296-59405315 Msa1113200:intron 25.0%
! AATATCTTTGTCTATGTGAA+TGG - chr7_3:59405582-59405601 None:intergenic 25.0%
! TACTGTTTCAATTAATCAAG+TGG - chr7_3:59405635-59405654 None:intergenic 25.0%
! TTCTTAGATTTATTTCAAGG+TGG - chr7_3:59405864-59405883 None:intergenic 25.0%
! TAAAGAATATAATGGCACAA+GGG - chr7_3:59406179-59406198 None:intergenic 25.0%
! TAAATGAGAAATTTGTACTC+GGG - chr7_3:59406350-59406369 None:intergenic 25.0%
! AGATTATACAAAATCAGCAA+GGG - chr7_3:59406464-59406483 None:intergenic 25.0%
! TAGATTATACAAAATCAGCA+AGG - chr7_3:59406465-59406484 None:intergenic 25.0%
! GATAGTTAGATCTCAAATAT+GGG - chr7_3:59406702-59406721 None:intergenic 25.0%
! AGATAGTTAGATCTCAAATA+TGG - chr7_3:59406703-59406722 None:intergenic 25.0%
! AGGGTTATAAAAAAGAATGA+AGG - chr7_3:59406749-59406768 None:intergenic 25.0%
! AAGTAAATTGGGTCAAAATT+TGG - chr7_3:59406796-59406815 None:intergenic 25.0%
! GAATAATAGGAATTTACCAT+AGG - chr7_3:59406961-59406980 None:intergenic 25.0%
!! TTGGGTTGTTATTAACATTA+AGG + chr7_3:59407257-59407276 Msa1113200:intron 25.0%
! ACAGTATATATTGGAAAATG+AGG - chr7_3:59407314-59407333 None:intergenic 25.0%
!! CATTTCTCATACAAGTTTTA+AGG - chr7_3:59407529-59407548 None:intergenic 25.0%
! CTTAAAACTTGTATGAGAAA+TGG + chr7_3:59407527-59407546 Msa1113200:CDS 25.0%
!! GAATTTTCTATTGCAATATC+TGG + chr7_3:59407650-59407669 Msa1113200:intron 25.0%
!! TACGTAATATTTTGTACTGT+AGG + chr7_3:59407692-59407711 Msa1113200:intron 25.0%
!!! AATGACGAGTTCTTTTTTTT+CGG - chr7_3:59407863-59407882 None:intergenic 25.0%
! AAAAAGAACTCGTCATTTAA+AGG + chr7_3:59407866-59407885 Msa1113200:intron 25.0%
!! AAATGGCTCTATAATATTCA+AGG - chr7_3:59407927-59407946 None:intergenic 25.0%
! TTCCTGAAACACAATAAAAA+TGG - chr7_3:59407944-59407963 None:intergenic 25.0%
!! ATTGTATTTTCATAGATGAC+AGG + chr7_3:59408027-59408046 Msa1113200:CDS 25.0%
! TATATAGTTATTGTCTTCTC+AGG + chr7_3:59408296-59408315 Msa1113200:intron 25.0%
!!! ATTGAGCTTTGTTAAAATGA+TGG + chr7_3:59408541-59408560 Msa1113200:three_prime_UTR 25.0%
!! GATGGTTTAAGTCTATATTT+TGG + chr7_3:59408559-59408578 Msa1113200:three_prime_UTR 25.0%
!! TTTGTGTTCTAAGTGTTTTG+TGG - chr7_3:59404579-59404598 None:intergenic 30.0%
!! AAGTAATTTGTTGTTGTTGG+TGG - chr7_3:59404604-59404623 None:intergenic 30.0%
!! GTTTTCTGTTTGTGTTTTTG+GGG - chr7_3:59404669-59404688 None:intergenic 30.0%
ATGATGTCGAATAACAGAAT+TGG - chr7_3:59404694-59404713 None:intergenic 30.0%
AATTCTGTTATTCGACATCA+TGG + chr7_3:59404693-59404712 Msa1113200:CDS 30.0%
CTGGAATGTCTTTGTAAAAA+GGG - chr7_3:59404735-59404754 None:intergenic 30.0%
! TCTGGAATGTCTTTGTAAAA+AGG - chr7_3:59404736-59404755 None:intergenic 30.0%
AAAGACATTCCAGAATTCTT+TGG + chr7_3:59404742-59404761 Msa1113200:CDS 30.0%
AAAGACATTCCAAAGAATTC+TGG - chr7_3:59404754-59404773 None:intergenic 30.0%
TCAAATTCAATCCATGATGT+TGG - chr7_3:59404802-59404821 None:intergenic 30.0%
! CTTAGAACTTTTGCATTGAA+TGG + chr7_3:59405012-59405031 Msa1113200:intron 30.0%
!! CATTGAATGGATTGATAGTT+TGG + chr7_3:59405025-59405044 Msa1113200:intron 30.0%
!!! CTGTTTTATTTTCTTTCAGG+CGG + chr7_3:59405083-59405102 Msa1113200:intron 30.0%
!!! GAAAGTTTTTTAAGGATGGA+AGG + chr7_3:59405115-59405134 Msa1113200:CDS 30.0%
GATGTATTTGATCTTATGTG+TGG + chr7_3:59405186-59405205 Msa1113200:intron 30.0%
CTTTGTCATATGTAGATTAC+TGG + chr7_3:59405233-59405252 Msa1113200:intron 30.0%
TTAGATGTGGTTTACTCATA+TGG + chr7_3:59405325-59405344 Msa1113200:intron 30.0%
GAAATGAAACCAAATAGTTG+TGG + chr7_3:59405521-59405540 Msa1113200:intron 30.0%
TGTTTCAATTAATCAAGTGG+TGG - chr7_3:59405632-59405651 None:intergenic 30.0%
!!! AAATTCTGCAGGTTTTAGTT+TGG - chr7_3:59405713-59405732 None:intergenic 30.0%
! TTACCAAGAGTGTATATCTT+TGG + chr7_3:59406060-59406079 Msa1113200:intron 30.0%
AGTGATTTCCAAACTTTCAA+AGG + chr7_3:59406100-59406119 Msa1113200:intron 30.0%
! TTTCACTACCTTTGAAAGTT+TGG - chr7_3:59406111-59406130 None:intergenic 30.0%
CTAAAGAATATAATGGCACA+AGG - chr7_3:59406180-59406199 None:intergenic 30.0%
TGCAGTGCTAAAGAATATAA+TGG - chr7_3:59406187-59406206 None:intergenic 30.0%
TGAAAGGGATACTTTATCTT+TGG + chr7_3:59406280-59406299 Msa1113200:intron 30.0%
AGTAATCTGAGAAGAAAAGT+AGG - chr7_3:59406571-59406590 None:intergenic 30.0%
!! GATTTGTTATTGATCGATCA+AGG - chr7_3:59406625-59406644 None:intergenic 30.0%
GGTAGACAAAAACTGATTAT+GGG - chr7_3:59406728-59406747 None:intergenic 30.0%
AGGTAGACAAAAACTGATTA+TGG - chr7_3:59406729-59406748 None:intergenic 30.0%
!! GGATTTAGTTTGTAGTGAAA+AGG - chr7_3:59406775-59406794 None:intergenic 30.0%
CTGTACAAGACAAATACTTA+AGG + chr7_3:59407029-59407048 Msa1113200:intron 30.0%
! TTCGCTTAAAGATTTTCACA+AGG - chr7_3:59407069-59407088 None:intergenic 30.0%
AACTTCTGTTAATCCAATAC+AGG + chr7_3:59407087-59407106 Msa1113200:intron 30.0%
! TGTTAATCCAATACAGGTTT+TGG + chr7_3:59407093-59407112 Msa1113200:intron 30.0%
! GTTAATCCAATACAGGTTTT+GGG + chr7_3:59407094-59407113 Msa1113200:intron 30.0%
AGTAGCTATATCAAAAGAGA+GGG - chr7_3:59407473-59407492 None:intergenic 30.0%
AATGGGTATTCATACATAGA+AGG + chr7_3:59407545-59407564 Msa1113200:CDS 30.0%
ATGGGTATTCATACATAGAA+GGG + chr7_3:59407546-59407565 Msa1113200:CDS 30.0%
AAAAAGCTGATGAACACAAA+AGG - chr7_3:59407810-59407829 None:intergenic 30.0%
!!! TCTTTTTTTTCGGTCCAATT+AGG - chr7_3:59407853-59407872 None:intergenic 30.0%
ATATTCAAGGTTTCCATGAA+AGG - chr7_3:59407914-59407933 None:intergenic 30.0%
!!! AGCCATTTTTATTGTGTTTC+AGG + chr7_3:59407939-59407958 Msa1113200:intron 30.0%
TTTATTGTGTTTCAGGAAAG+AGG + chr7_3:59407946-59407965 Msa1113200:intron 30.0%
TCCTTATAGAATTCAGTATC+CGG - chr7_3:59407975-59407994 None:intergenic 30.0%
AATTCTATAAGGAAGTTGTC+AGG + chr7_3:59407982-59408001 Msa1113200:CDS 30.0%
GATAAACTACTTTGATAGGT+TGG - chr7_3:59408260-59408279 None:intergenic 30.0%
ATACACCAATTTCGTTTACA+CGG + chr7_3:59408464-59408483 Msa1113200:three_prime_UTR 30.0%
!! GAGAATGGTGTTGTAACATT+TGG - chr7_3:59404544-59404563 None:intergenic 35.0%
TGGATTGAGAATGAAGAGAA+TGG - chr7_3:59404559-59404578 None:intergenic 35.0%
ATTGCAAACATCCAACATCA+TGG + chr7_3:59404788-59404807 Msa1113200:CDS 35.0%
!! TGAAAAGGGTCTTATTGATG+AGG + chr7_3:59404819-59404838 Msa1113200:CDS 35.0%
!!! TTTGAGTGTGCTTGTTTTGA+TGG + chr7_3:59404960-59404979 Msa1113200:intron 35.0%
!!! GGAAGGGATTTTGATTTACA+AGG + chr7_3:59405132-59405151 Msa1113200:CDS 35.0%
! TTGGAGGTACAAATTAGATG+TGG + chr7_3:59405312-59405331 Msa1113200:intron 35.0%
ATCTTTGTCTATGTGAATGG+TGG - chr7_3:59405579-59405598 None:intergenic 35.0%
!! AATCAAGTGGTGGAGAATTT+TGG - chr7_3:59405622-59405641 None:intergenic 35.0%
!! CAATTTGGTTTGCAGCTATA+TGG - chr7_3:59405815-59405834 None:intergenic 35.0%
TATAGCTGCAAACCAAATTG+TGG + chr7_3:59405815-59405834 Msa1113200:intron 35.0%
ACGAAAGGATATCCACAATT+TGG - chr7_3:59405830-59405849 None:intergenic 35.0%
CAACCAAAGATATACACTCT+TGG - chr7_3:59406066-59406085 None:intergenic 35.0%
! CAAGAGTGTATATCTTTGGT+TGG + chr7_3:59406064-59406083 Msa1113200:intron 35.0%
ACGCATTTATTCTATTGCTG+AGG - chr7_3:59406214-59406233 None:intergenic 35.0%
AAACAGATGATGAGGGAAAT+GGG - chr7_3:59406250-59406269 None:intergenic 35.0%
TTATCTTTGGCCATTGATGA+TGG + chr7_3:59406293-59406312 Msa1113200:intron 35.0%
! TTGAACAAGAATTGGTTCAG+CGG - chr7_3:59406411-59406430 None:intergenic 35.0%
ATACAAAATCAGCAAGGGTA+AGG - chr7_3:59406459-59406478 None:intergenic 35.0%
! ACTTCTTTAGGAGGATAAGT+GGG - chr7_3:59406533-59406552 None:intergenic 35.0%
CAATGAATCACTTCTTTAGG+AGG - chr7_3:59406542-59406561 None:intergenic 35.0%
TGGCAATGAATCACTTCTTT+AGG - chr7_3:59406545-59406564 None:intergenic 35.0%
CTGAGAAGAAAAGTAGGAAA+TGG - chr7_3:59406565-59406584 None:intergenic 35.0%
TTATTGATCGATCAAGGAAG+TGG - chr7_3:59406619-59406638 None:intergenic 35.0%
GATAGCGAGGAAAGTAAATT+GGG - chr7_3:59406807-59406826 None:intergenic 35.0%
AGATAGCGAGGAAAGTAAAT+TGG - chr7_3:59406808-59406827 None:intergenic 35.0%
AAAGACTAGGGTGGAATAAT+AGG - chr7_3:59406974-59406993 None:intergenic 35.0%
AGACGGTAAAGAAAAGACTA+GGG - chr7_3:59406986-59407005 None:intergenic 35.0%
TGGTGATTGAGAATTTGAGA+CGG - chr7_3:59407003-59407022 None:intergenic 35.0%
TTTGTCTTGTACAGCTTAAC+TGG - chr7_3:59407023-59407042 None:intergenic 35.0%
! GCTTAAAGATTTTCACAAGG+AGG - chr7_3:59407066-59407085 None:intergenic 35.0%
! AGCAAAGTTATTGAGAGTAC+TGG - chr7_3:59407168-59407187 None:intergenic 35.0%
AAGTAACATATAGCCAGTCA+AGG - chr7_3:59407350-59407369 None:intergenic 35.0%
!! CTCTCATGGAATTTTGATGT+TGG - chr7_3:59407408-59407427 None:intergenic 35.0%
GTACATTATGAATGCTCTCA+TGG - chr7_3:59407422-59407441 None:intergenic 35.0%
TAGCTATATCAAAAGAGAGG+GGG - chr7_3:59407471-59407490 None:intergenic 35.0%
GTAGCTATATCAAAAGAGAG+GGG - chr7_3:59407472-59407491 None:intergenic 35.0%
CAGTAGCTATATCAAAAGAG+AGG - chr7_3:59407474-59407493 None:intergenic 35.0%
!!! TGTTCTTCTTTTTCGATGAC+AGG + chr7_3:59407503-59407522 Msa1113200:intron 35.0%
TGGGTATTCATACATAGAAG+GGG + chr7_3:59407547-59407566 Msa1113200:CDS 35.0%
!!! AATATCTGGTTTGCTTTTCG+TGG + chr7_3:59407664-59407683 Msa1113200:intron 35.0%
ACCGGATACTGAATTCTATA+AGG + chr7_3:59407971-59407990 Msa1113200:CDS 35.0%
ATGCTTATGTACTAGCATCT+TGG + chr7_3:59408146-59408165 Msa1113200:intron 35.0%
ATGAGGGAGAGATTTACATT+GGG - chr7_3:59408174-59408193 None:intergenic 35.0%
TTTCACCGTGTAAACGAAAT+TGG - chr7_3:59408472-59408491 None:intergenic 35.0%
TTTCGTTTACACGGTGAAAA+AGG + chr7_3:59408473-59408492 Msa1113200:three_prime_UTR 35.0%
TTCGTTTACACGGTGAAAAA+GGG + chr7_3:59408474-59408493 Msa1113200:three_prime_UTR 35.0%
TGTGGTTTACTCATATGGTC+TGG + chr7_3:59405330-59405349 Msa1113200:intron 40.0%
CCACAACTTCCACAACTATT+TGG - chr7_3:59405533-59405552 None:intergenic 40.0%
CCAAATAGTTGTGGAAGTTG+TGG + chr7_3:59405530-59405549 Msa1113200:intron 40.0%
! GTTTGTGGAAATTTTGCAGC+TGG - chr7_3:59405658-59405677 None:intergenic 40.0%
! GTGGCAGAATTTTACACGAA+AGG - chr7_3:59405845-59405864 None:intergenic 40.0%
CAAATGATCCCCTTTCTCAT+CGG + chr7_3:59405890-59405909 Msa1113200:intron 40.0%
TTGTGGGGTGAATTATTCAG+TGG - chr7_3:59405938-59405957 None:intergenic 40.0%
! CAATCTTCTCAAGTGTTGTG+GGG - chr7_3:59405953-59405972 None:intergenic 40.0%
! CCAATCTTCTCAAGTGTTGT+GGG - chr7_3:59405954-59405973 None:intergenic 40.0%
! TCCAATCTTCTCAAGTGTTG+TGG - chr7_3:59405955-59405974 None:intergenic 40.0%
TCCCACACATTATGTTAGAG+TGG + chr7_3:59406020-59406039 Msa1113200:intron 40.0%
CCCACTCTAACATAATGTGT+GGG - chr7_3:59406024-59406043 None:intergenic 40.0%
CCCACACATTATGTTAGAGT+GGG + chr7_3:59406021-59406040 Msa1113200:intron 40.0%
TCCCACTCTAACATAATGTG+TGG - chr7_3:59406025-59406044 None:intergenic 40.0%
GGGAAATGGGAAGAAGTAAA+GGG - chr7_3:59406237-59406256 None:intergenic 40.0%
AGGGAAATGGGAAGAAGTAA+AGG - chr7_3:59406238-59406257 None:intergenic 40.0%
GAAACAGATGATGAGGGAAA+TGG - chr7_3:59406251-59406270 None:intergenic 40.0%
GAGTAGGAAACAGATGATGA+GGG - chr7_3:59406257-59406276 None:intergenic 40.0%
TGAGTAGGAAACAGATGATG+AGG - chr7_3:59406258-59406277 None:intergenic 40.0%
TGTTTCCTACTCACGTGAAA+GGG + chr7_3:59406265-59406284 Msa1113200:intron 40.0%
AGAAATTTGTACTCGGGTGA+TGG - chr7_3:59406344-59406363 None:intergenic 40.0%
CTCATTTATTGCTCGCTTGT+TGG + chr7_3:59406362-59406381 Msa1113200:intron 40.0%
GGTAGGAGTTGAACAAGAAT+TGG - chr7_3:59406419-59406438 None:intergenic 40.0%
GAGAGATTTAGTCGTCGTTA+TGG - chr7_3:59406490-59406509 None:intergenic 40.0%
CGACTAAATCTCTCCTTAAG+AGG + chr7_3:59406496-59406515 Msa1113200:intron 40.0%
! CACTTCTTTAGGAGGATAAG+TGG - chr7_3:59406534-59406553 None:intergenic 40.0%
!! GTGGTTGACAGTTTTAGTCT+TGG - chr7_3:59406600-59406619 None:intergenic 40.0%
TTGGGAAATGTTCAGTATGG+TGG - chr7_3:59406651-59406670 None:intergenic 40.0%
AGCTTGGGAAATGTTCAGTA+TGG - chr7_3:59406654-59406673 None:intergenic 40.0%
AAATTGCTAGAGGGAAGCTT+GGG - chr7_3:59406669-59406688 None:intergenic 40.0%
ATCTCAAATATGGGTCGTGT+GGG - chr7_3:59406693-59406712 None:intergenic 40.0%
GTTTGTAGTGAAAAGGCTGA+GGG - chr7_3:59406768-59406787 None:intergenic 40.0%
AGTTTGTAGTGAAAAGGCTG+AGG - chr7_3:59406769-59406788 None:intergenic 40.0%
ACAGGATCTTGAAGAAAGAG+AGG + chr7_3:59406885-59406904 Msa1113200:intron 40.0%
AAGAAAGAGAGGAAGTAGAC+TGG + chr7_3:59406896-59406915 Msa1113200:intron 40.0%
CAGATAAGTCAGAGTTGAGA+AGG + chr7_3:59406924-59406943 Msa1113200:intron 40.0%
GAGACGGTAAAGAAAAGACT+AGG - chr7_3:59406987-59407006 None:intergenic 40.0%
CTGATGCACGACATTGTAAA+TGG + chr7_3:59407224-59407243 Msa1113200:intron 40.0%
TGTCTTTATCCTACCTTGAC+TGG + chr7_3:59407334-59407353 Msa1113200:intron 40.0%
AACATATAGCCAGTCAAGGT+AGG - chr7_3:59407346-59407365 None:intergenic 40.0%
!! ACGTTTTGTTCGTGTACACT+TGG + chr7_3:59407763-59407782 Msa1113200:CDS 40.0%
TTTGTTCGTGTACACTTGGT+AGG + chr7_3:59407767-59407786 Msa1113200:intron 40.0%
ACACTCAGACTATCCTTTCA+TGG + chr7_3:59407898-59407917 Msa1113200:intron 40.0%
TGTTTCAGGAAAGAGGAAAC+CGG + chr7_3:59407953-59407972 Msa1113200:intron 40.0%
GATGAGGGAGAGATTTACAT+TGG - chr7_3:59408175-59408194 None:intergenic 40.0%
! TATGTCTGCTGCTTGATTAG+AGG - chr7_3:59408206-59408225 None:intergenic 40.0%
TACTGAAGCGGAAATTCTGC+AGG - chr7_3:59405724-59405743 None:intergenic 45.0%
CGATGAGAAAGGGGATCATT+TGG - chr7_3:59405892-59405911 None:intergenic 45.0%
AGTTACGTCCGATGAGAAAG+GGG - chr7_3:59405901-59405920 None:intergenic 45.0%
CAGTTACGTCCGATGAGAAA+GGG - chr7_3:59405902-59405921 None:intergenic 45.0%
TCAGTTACGTCCGATGAGAA+AGG - chr7_3:59405903-59405922 None:intergenic 45.0%
GGGTGAATTATTCAGTGGCT+AGG - chr7_3:59405933-59405952 None:intergenic 45.0%
CCCACAACACTTGAGAAGAT+TGG + chr7_3:59405951-59405970 Msa1113200:intron 45.0%
CTGTTTCCTACTCACGTGAA+AGG + chr7_3:59406264-59406283 Msa1113200:intron 45.0%
AGTATCCCTTTCACGTGAGT+AGG - chr7_3:59406273-59406292 None:intergenic 45.0%
!! TTGGCCATTGATGATGGAAC+AGG + chr7_3:59406299-59406318 Msa1113200:intron 45.0%
AGCTCCTGTTCCATCATCAA+TGG - chr7_3:59406306-59406325 None:intergenic 45.0%
GATGGAACAGGAGCTGTATT+AGG + chr7_3:59406311-59406330 Msa1113200:intron 45.0%
GGCAAGAGAGATACCTCTTA+AGG - chr7_3:59406512-59406531 None:intergenic 45.0%
GAAATTGCTAGAGGGAAGCT+TGG - chr7_3:59406670-59406689 None:intergenic 45.0%
TCTCAAATATGGGTCGTGTG+GGG - chr7_3:59406692-59406711 None:intergenic 45.0%
GATCTCAAATATGGGTCGTG+TGG - chr7_3:59406694-59406713 None:intergenic 45.0%
GGGAAGAGCAAATACTTGAC+AGG + chr7_3:59406867-59406886 Msa1113200:intron 45.0%
AGAGAGGAAGTAGACTGGAA+AGG + chr7_3:59406901-59406920 Msa1113200:intron 45.0%
GAAGGACATTTGACTGCCTA+TGG + chr7_3:59406942-59406961 Msa1113200:intron 45.0%
CGGTAAAGAAAAGACTAGGG+TGG - chr7_3:59406983-59407002 None:intergenic 45.0%
TGCAAGCCCAAAACCTGTAT+TGG - chr7_3:59407103-59407122 None:intergenic 45.0%
ATATCAAAAGAGAGGGGGCT+TGG - chr7_3:59407466-59407485 None:intergenic 45.0%
TCTCAGGCCAAAAAATGTGC+AGG + chr7_3:59408312-59408331 Msa1113200:intron 45.0%
CGCGAAGAACTGTCATTGAT+GGG + chr7_3:59408388-59408407 Msa1113200:CDS 45.0%
GCGAAGAACTGTCATTGATG+GGG + chr7_3:59408389-59408408 Msa1113200:CDS 45.0%
CGAAGAACTGTCATTGATGG+GGG + chr7_3:59408390-59408409 Msa1113200:CDS 45.0%
CGGCTGTACTGTTACTGAAG+CGG - chr7_3:59405736-59405755 None:intergenic 50.0%
AACAGGAGCTGTATTAGGCG+TGG + chr7_3:59406316-59406335 Msa1113200:intron 50.0%
GCTGAAACAAACTGGCAGAC+AGG - chr7_3:59406389-59406408 None:intergenic 50.0%
GTTCAGCGGCTGAAACAAAC+TGG - chr7_3:59406397-59406416 None:intergenic 50.0%
CAACTCCTACCTTCCACAAC+CGG + chr7_3:59406428-59406447 Msa1113200:intron 50.0%
TATGTCCGGTTGTGGAAGGT+AGG - chr7_3:59406436-59406455 None:intergenic 50.0%
AAGGTATGTCCGGTTGTGGA+AGG - chr7_3:59406440-59406459 None:intergenic 50.0%
CAGCAAGGGTAAGGTATGTC+CGG - chr7_3:59406450-59406469 None:intergenic 50.0%
CGTGTGGGGAAATTGCTAGA+GGG - chr7_3:59406678-59406697 None:intergenic 50.0%
TCGTGTGGGGAAATTGCTAG+AGG - chr7_3:59406679-59406698 None:intergenic 50.0%
!!! GCTGCTGCCTGCACATTTTT+TGG - chr7_3:59408322-59408341 None:intergenic 50.0%
AGCAGCTGAAGTTGGGATCA+AGG + chr7_3:59408336-59408355 Msa1113200:CDS 50.0%
GCAGCTGAAGTTGGGATCAA+GGG + chr7_3:59408337-59408356 Msa1113200:CDS 50.0%
GCGCGAAGAACTGTCATTGA+TGG + chr7_3:59408387-59408406 Msa1113200:CDS 50.0%
GGGTAAGGTATGTCCGGTTG+TGG - chr7_3:59406444-59406463 None:intergenic 55.0%
GGGGTAAGAGTGAGATAGCG+AGG - chr7_3:59406820-59406839 None:intergenic 55.0%
TGCTTGATTAGAGGCGACGC+GGG - chr7_3:59408197-59408216 None:intergenic 55.0%
CTGCTTGATTAGAGGCGACG+CGG - chr7_3:59408198-59408217 None:intergenic 55.0%
TGCAGGCAGCAGCTGAAGTT+GGG + chr7_3:59408329-59408348 Msa1113200:CDS 55.0%
TTAGAGGCGACGCGGGATGA+GGG - chr7_3:59408190-59408209 None:intergenic 60.0%
ATTAGAGGCGACGCGGGATG+AGG - chr7_3:59408191-59408210 None:intergenic 60.0%
GTGCAGGCAGCAGCTGAAGT+TGG + chr7_3:59408328-59408347 Msa1113200:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59404448 59408629 59404448 ID=Msa1113200;Name=Msa1113200
chr7_3 mRNA 59404448 59408629 59404448 ID=Msa1113200-mRNA-1;Parent=Msa1113200;Name=Msa1113200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=66|1|1|1|1|1|6|188|258
chr7_3 exon 59404448 59404840 59404448 ID=Msa1113200-mRNA-1:exon:13171;Parent=Msa1113200-mRNA-1
chr7_3 exon 59405102 59405153 59405102 ID=Msa1113200-mRNA-1:exon:13172;Parent=Msa1113200-mRNA-1
chr7_3 exon 59407525 59407639 59407525 ID=Msa1113200-mRNA-1:exon:13173;Parent=Msa1113200-mRNA-1
chr7_3 exon 59407714 59407784 59407714 ID=Msa1113200-mRNA-1:exon:13174;Parent=Msa1113200-mRNA-1
chr7_3 exon 59407961 59408048 59407961 ID=Msa1113200-mRNA-1:exon:13175;Parent=Msa1113200-mRNA-1
chr7_3 exon 59408318 59408629 59408318 ID=Msa1113200-mRNA-1:exon:13176;Parent=Msa1113200-mRNA-1
chr7_3 five_prime_UTR 59404448 59404513 59404448 ID=Msa1113200-mRNA-1:five_prime_utr;Parent=Msa1113200-mRNA-1
chr7_3 CDS 59404514 59404840 59404514 ID=Msa1113200-mRNA-1:cds;Parent=Msa1113200-mRNA-1
chr7_3 CDS 59405102 59405153 59405102 ID=Msa1113200-mRNA-1:cds;Parent=Msa1113200-mRNA-1
chr7_3 CDS 59407525 59407639 59407525 ID=Msa1113200-mRNA-1:cds;Parent=Msa1113200-mRNA-1
chr7_3 CDS 59407714 59407784 59407714 ID=Msa1113200-mRNA-1:cds;Parent=Msa1113200-mRNA-1
chr7_3 CDS 59407961 59408048 59407961 ID=Msa1113200-mRNA-1:cds;Parent=Msa1113200-mRNA-1
chr7_3 CDS 59408318 59408441 59408318 ID=Msa1113200-mRNA-1:cds;Parent=Msa1113200-mRNA-1
chr7_3 three_prime_UTR 59408442 59408629 59408442 ID=Msa1113200-mRNA-1:three_prime_utr;Parent=Msa1113200-mRNA-1
Gene Sequence

>Msa1113200

ATGAAAACAATTGCAAAAATGGTGTTACCAAATGTTACAACACCATTCTCTTCATTCTCAATCCACAAAACACTTAGAACACAAACACCACCAACAACAACAAATTACTTAAAACATTCACTTTCAAATTCAATCACAAACATGTCATCATTCCCCAAAAACACAAACAGAAAACTTCCAATTCTGTTATTCGACATCATGGACACAATTGTTCGTGACCCTTTTTACAAAGACATTCCAGAATTCTTTGGAATGTCTTTCAATGAACTCATAGATTGCAAACATCCAACATCATGGATTGAATTTGAAAAGGGTCTTATTGATGAGGCGGAGCTAGAAAGAAAGTTTTTTAAGGATGGAAGGGATTTTGATTTACAAGGCCTTAAAACTTGTATGAGAAATGGGTATTCATACATAGAAGGGGTTGAACAATTGCTTCTTGCCTTAAAGAAAAATAACTTTGAGATGCATGCTTTTACTAATTATCCTATATGGTATCAGTTGATCGAAGACAAGTTAAAGCTATCAAAATATTTATCTTGGACGTTTTGTTCGTGTACACTTGGAAAGAGGAAACCGGATACTGAATTCTATAAGGAAGTTGTCAGGCATCTTGAAGTTGATCCAGAATATTGTATTTTCATAGATGACAGGCCAAAAAATGTGCAGGCAGCAGCTGAAGTTGGGATCAAGGGTGTACATTTCAAGAATGTCGATTTACTGCGCGAAGAACTGTCATTGATGGGGGTTGACATTTCAACTGATGAAGATCAATAG

Protein sequence

>Msa1113200

MKTIAKMVLPNVTTPFSSFSIHKTLRTQTPPTTTNYLKHSLSNSITNMSSFPKNTNRKLPILLFDIMDTIVRDPFYKDIPEFFGMSFNELIDCKHPTSWIEFEKGLIDEAELERKFFKDGRDFDLQGLKTCMRNGYSYIEGVEQLLLALKKNNFEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSCTLGKRKPDTEFYKEVVRHLEVDPEYCIFIDDRPKNVQAAAEVGIKGVHFKNVDLLREELSLMGVDISTDEDQ*