Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660460 | XP_013447081.1 | 76.389 | 144 | 21 | 2 | 1 | 144 | 1 | 131 | 1.73e-66 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660460 | A0A072TW45 | 76.389 | 144 | 21 | 2 | 1 | 144 | 1 | 131 | 8.27e-67 | 223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660460 | Msa1051880 | -0.804861 | 1.762822e-49 | -8.615850e-47 |
| Msa0127650 | Msa0660460 | -0.817123 | 3.881989e-52 | -8.615850e-47 |
| Msa0189320 | Msa0660460 | -0.821585 | 3.733264e-53 | -8.615850e-47 |
| Msa0194950 | Msa0660460 | 0.805953 | 1.040688e-49 | -8.615850e-47 |
| Msa0233630 | Msa0660460 | 0.805262 | 1.453533e-49 | -8.615850e-47 |
| Msa0236960 | Msa0660460 | 0.811602 | 6.450636e-51 | -8.615850e-47 |
| Msa0241390 | Msa0660460 | -0.806026 | 1.004483e-49 | -8.615850e-47 |
| Msa0280090 | Msa0660460 | -0.802172 | 6.365211e-49 | -8.615850e-47 |
| Msa0315440 | Msa0660460 | 0.810706 | 1.008697e-50 | -8.615850e-47 |
| Msa0548240 | Msa0660460 | -0.834473 | 2.936578e-56 | -8.615850e-47 |
| Msa0602390 | Msa0660460 | -0.804785 | 1.828079e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660460 | MtrunA17_Chr8g0387281 | 76.389 | 144 | 21 | 2 | 1 | 144 | 1 | 131 | 1.59e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATGGGTTTGCTCAAATC+AGG | 0.300255 | 4_3:+71228960 | Msa0660460:CDS |
| GGTCGGTCAGGGGCGGCCGG+TGG | 0.310117 | 4_3:-71227387 | None:intergenic |
| GTGGACAGTGGTGGTCGGTC+AGG | 0.320712 | 4_3:-71227399 | None:intergenic |
| AAGTGATTCGTCCAACGTTC+TGG | 0.327358 | 4_3:-71228880 | None:intergenic |
| ATTTCACCGGTGAAATCATT+AGG | 0.343290 | 4_3:-71229044 | None:intergenic |
| CAAATGCTTCAACTGGATTC+CGG | 0.351671 | 4_3:+71229014 | Msa0660460:CDS |
| TCCATCTTCAGAACTGGATA+TGG | 0.355520 | 4_3:+71228599 | Msa0660460:CDS |
| CACTCTTCCATCTTCAGAAC+TGG | 0.357556 | 4_3:+71228593 | Msa0660460:CDS |
| TGGACAGTGGTGGTCGGTCA+GGG | 0.366878 | 4_3:-71227398 | None:intergenic |
| CATCTGAGCAGGGGCGAACC+TGG | 0.376136 | 4_3:-71228218 | None:intergenic |
| CGGAATCCAGTTGAAGCATT+TGG | 0.381456 | 4_3:-71229013 | None:intergenic |
| TGTTGTGCTGGTTCTGCAAT+TGG | 0.383088 | 4_3:-71227421 | None:intergenic |
| GCGGCCGGTGGGTGGTGCAC+CGG | 0.383463 | 4_3:-71227375 | None:intergenic |
| CGGCCGGTGGGTGGTGCACC+GGG | 0.391648 | 4_3:-71227374 | None:intergenic |
| AGGTGGTCCGTCATCTGAGC+AGG | 0.408565 | 4_3:-71228229 | None:intergenic |
| GGTCAGGGGCGGCCGGTGGG+TGG | 0.419014 | 4_3:-71227383 | None:intergenic |
| GGACAGTGGTGGTCGGTCAG+GGG | 0.422298 | 4_3:-71227397 | None:intergenic |
| GGTGGTGCACCGGGTGTTTG+TGG | 0.428426 | 4_3:-71227365 | None:intergenic |
| TTCTCACTCTCAGCCACAAT+TGG | 0.430201 | 4_3:+71228700 | Msa0660460:CDS |
| AATTTGCAACGATTTGTTGA+TGG | 0.436941 | 4_3:+71228944 | Msa0660460:CDS |
| GCTCGACCAAATGCTTCAAC+TGG | 0.441206 | 4_3:+71229007 | Msa0660460:CDS |
| AGTGAGAAGAGTTGGATTCA+AGG | 0.443913 | 4_3:-71228685 | None:intergenic |
| CGAACCTGGAGGCACAATAT+CGG | 0.449452 | 4_3:-71228204 | None:intergenic |
| GTCGGTCAGGGGCGGCCGGT+GGG | 0.460354 | 4_3:-71227386 | None:intergenic |
| AGATGTTGGTGGTGTTGTGC+TGG | 0.460691 | 4_3:-71227433 | None:intergenic |
| GGTGGTCGGTCAGGGGCGGC+CGG | 0.460704 | 4_3:-71227390 | None:intergenic |
| TGGCTGAGAGTGAGAAGAGT+TGG | 0.471356 | 4_3:-71228693 | None:intergenic |
| TTCTCACTCTGAACAGCATT+CGG | 0.473334 | 4_3:+71228280 | Msa0660460:five_prime_UTR |
| CAAGCCACCTTTGTCAAATC+CGG | 0.474616 | 4_3:+71228727 | Msa0660460:CDS |
| ATTTGCAACGATTTGTTGAT+GGG | 0.487685 | 4_3:+71228945 | Msa0660460:CDS |
| GAAGCATTTGGTCGAGCACC+TGG | 0.490430 | 4_3:-71229001 | None:intergenic |
| GAAATCATTAGGAGGAAATC+CGG | 0.490435 | 4_3:-71229033 | None:intergenic |
| GTGAGAAGAGTAGTGTAGTA+CGG | 0.495417 | 4_3:-71228573 | None:intergenic |
| GCGTATTGATGATGCCCGCC+AGG | 0.503932 | 4_3:+71228983 | Msa0660460:CDS |
| TGAGAAGAGTAGTGTAGTAC+GGG | 0.508788 | 4_3:-71228572 | None:intergenic |
| GCCATATCCAGTTCTGAAGA+TGG | 0.508904 | 4_3:-71228600 | None:intergenic |
| CTCACCGATATTGTGCCTCC+AGG | 0.509742 | 4_3:+71228200 | Msa0660460:five_prime_UTR |
| CTGTTTCTGTATTCTATCTG+AGG | 0.511377 | 4_3:-71227278 | None:intergenic |
| CTAAGTGGATGCTTAACATC+CGG | 0.513462 | 4_3:-71228746 | None:intergenic |
| GTAATACATACTCCTCTAAG+TGG | 0.513932 | 4_3:-71228761 | None:intergenic |
| GATGTTAAGCATCCACTTAG+AGG | 0.517055 | 4_3:+71228749 | Msa0660460:CDS |
| TGTGCTGGTTCTGCAATTGG+TGG | 0.520542 | 4_3:-71227418 | None:intergenic |
| GTGAGAAGAGGCGAAGACTT+CGG | 0.523611 | 4_3:-71228264 | None:intergenic |
| ATGACCTAAAATAGAGATGT+TGG | 0.527447 | 4_3:-71227447 | None:intergenic |
| TTTCCTCCTAATGATTTCAC+CGG | 0.534738 | 4_3:+71229038 | Msa0660460:CDS |
| GGTGGCTTGTTGACCAATTG+TGG | 0.541012 | 4_3:-71228713 | None:intergenic |
| TTCGGATTCATCAGTGGAGG+TGG | 0.544611 | 4_3:-71228246 | None:intergenic |
| GGTGGTCCGTCATCTGAGCA+GGG | 0.545708 | 4_3:-71228228 | None:intergenic |
| GGCATTCGAATTCGCATCAT+CGG | 0.554325 | 4_3:-71228551 | None:intergenic |
| GTTCGCCCCTGCTCAGATGA+CGG | 0.554486 | 4_3:+71228222 | Msa0660460:five_prime_UTR |
| TGATGGGTTTGCTCAAATCA+GGG | 0.556111 | 4_3:+71228961 | Msa0660460:CDS |
| CATTTGGTCGAGCACCTGGC+GGG | 0.557395 | 4_3:-71228997 | None:intergenic |
| GAAGTAGTGACTAGTGGCGG+CGG | 0.558090 | 4_3:-71227256 | None:intergenic |
| CAGTGGTGGTCGGTCAGGGG+CGG | 0.560109 | 4_3:-71227394 | None:intergenic |
| CTTAAGAAACGCCAGAACGT+TGG | 0.563830 | 4_3:+71228869 | Msa0660460:CDS |
| AAGTAGTGACTAGTGGCGGC+GGG | 0.575130 | 4_3:-71227255 | None:intergenic |
| ACACCCGGTGCACCACCCAC+CGG | 0.596782 | 4_3:+71227371 | Msa0660460:five_prime_UTR |
| TCACCGGTGAAATCATTAGG+AGG | 0.603943 | 4_3:-71229041 | None:intergenic |
| ATGCTGTTCAGAGTGAGAAG+AGG | 0.608322 | 4_3:-71228276 | None:intergenic |
| GCATGTACTGAGATAGAAGA+AGG | 0.611483 | 4_3:-71227324 | None:intergenic |
| AAACTACAGCCACAAACACC+CGG | 0.612251 | 4_3:+71227356 | Msa0660460:five_prime_UTR |
| AGAAGAGTTGGATTCAAGGT+CGG | 0.616462 | 4_3:-71228681 | None:intergenic |
| ATACATAAGTGAAACTTCGT+TGG | 0.617709 | 4_3:-71228643 | None:intergenic |
| ACATCCGGATTTGACAAAGG+TGG | 0.619573 | 4_3:-71228731 | None:intergenic |
| GTGGTCCGTCATCTGAGCAG+GGG | 0.632067 | 4_3:-71228227 | None:intergenic |
| TTAACATCCGGATTTGACAA+AGG | 0.635476 | 4_3:-71228734 | None:intergenic |
| AAGGTCGGAATCATCATCAG+TGG | 0.636963 | 4_3:-71228666 | None:intergenic |
| CTTCAGAACTGGATATGGCG+TGG | 0.641845 | 4_3:+71228604 | Msa0660460:CDS |
| CTGAGCAGGGGCGAACCTGG+AGG | 0.649262 | 4_3:-71228215 | None:intergenic |
| ACCTAAAATAGAGATGTTGG+TGG | 0.652128 | 4_3:-71227444 | None:intergenic |
| TCTGAGGAAGTAGTGACTAG+TGG | 0.653222 | 4_3:-71227262 | None:intergenic |
| GACTTCGGATTCATCAGTGG+AGG | 0.660435 | 4_3:-71228249 | None:intergenic |
| GTTCTGCAATTGGTGGACAG+TGG | 0.663439 | 4_3:-71227411 | None:intergenic |
| GAGGAAGTAGTGACTAGTGG+CGG | 0.667263 | 4_3:-71227259 | None:intergenic |
| AATTGGTGGACAGTGGTGGT+CGG | 0.669570 | 4_3:-71227404 | None:intergenic |
| CTGCAATTGGTGGACAGTGG+TGG | 0.672272 | 4_3:-71227408 | None:intergenic |
| GCATTTGGTCGAGCACCTGG+CGG | 0.688259 | 4_3:-71228998 | None:intergenic |
| GAAGACTTCGGATTCATCAG+TGG | 0.688711 | 4_3:-71228252 | None:intergenic |
| CTGGAGGCACAATATCGGTG+AGG | 0.729656 | 4_3:-71228199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATTATTATTATTATCT+TGG | - | chr4_3:71227942-71227961 | None:intergenic | 10.0% |
| !! | CATTATTATTATTATTATCT+TGG | - | chr4_3:71227942-71227961 | None:intergenic | 10.0% |
| !! | ACAAATTAGAGTAATTAAAT+GGG | - | chr4_3:71227710-71227729 | None:intergenic | 15.0% |
| !! | AACAAATTAGAGTAATTAAA+TGG | - | chr4_3:71227711-71227730 | None:intergenic | 15.0% |
| !!! | TAATTTGTTTAGTACATTTT+AGG | + | chr4_3:71227722-71227741 | Msa0660460:intron | 15.0% |
| !!! | AATTTGTTTAGTACATTTTA+GGG | + | chr4_3:71227723-71227742 | Msa0660460:intron | 15.0% |
| !!! | TTTTCTTAATAAAATGAGTT+TGG | + | chr4_3:71227803-71227822 | Msa0660460:intron | 15.0% |
| !!! | AGAATTGATTTAAATTTACA+TGG | + | chr4_3:71227890-71227909 | Msa0660460:intron | 15.0% |
| !!! | TTTTTGTTGTATAATTGAAT+TGG | + | chr4_3:71228076-71228095 | Msa0660460:intron | 15.0% |
| !!! | TTTTGTTGTATAATTGAATT+GGG | + | chr4_3:71228077-71228096 | Msa0660460:intron | 15.0% |
| !! | AAAGAATTGAAATAACAAAA+AGG | - | chr4_3:71228803-71228822 | None:intergenic | 15.0% |
| !! | ACAAATTAGAGTAATTAAAT+GGG | - | chr4_3:71227710-71227729 | None:intergenic | 15.0% |
| !! | AACAAATTAGAGTAATTAAA+TGG | - | chr4_3:71227711-71227730 | None:intergenic | 15.0% |
| !!! | TAATTTGTTTAGTACATTTT+AGG | + | chr4_3:71227722-71227741 | Msa0660460:intron | 15.0% |
| !!! | AATTTGTTTAGTACATTTTA+GGG | + | chr4_3:71227723-71227742 | Msa0660460:intron | 15.0% |
| !!! | TTTTCTTAATAAAATGAGTT+TGG | + | chr4_3:71227803-71227822 | Msa0660460:intron | 15.0% |
| !!! | AGAATTGATTTAAATTTACA+TGG | + | chr4_3:71227890-71227909 | Msa0660460:intron | 15.0% |
| !!! | TTTTTGTTGTATAATTGAAT+TGG | + | chr4_3:71228076-71228095 | Msa0660460:intron | 15.0% |
| !!! | TTTTGTTGTATAATTGAATT+GGG | + | chr4_3:71228077-71228096 | Msa0660460:intron | 15.0% |
| !! | AAAGAATTGAAATAACAAAA+AGG | - | chr4_3:71228803-71228822 | None:intergenic | 15.0% |
| !! | GGTTTATAAGAAAAAAAAGA+AGG | - | chr4_3:71227485-71227504 | None:intergenic | 20.0% |
| !!! | TGAAATTGATTTTAGCTTTT+AGG | + | chr4_3:71227531-71227550 | Msa0660460:intron | 20.0% |
| !! | ATTGAAATAACAAAAAGGAA+AGG | - | chr4_3:71228798-71228817 | None:intergenic | 20.0% |
| !! | GGTTTATAAGAAAAAAAAGA+AGG | - | chr4_3:71227485-71227504 | None:intergenic | 20.0% |
| !!! | TGAAATTGATTTTAGCTTTT+AGG | + | chr4_3:71227531-71227550 | Msa0660460:intron | 20.0% |
| !! | ATTGAAATAACAAAAAGGAA+AGG | - | chr4_3:71228798-71228817 | None:intergenic | 20.0% |
| ! | TCAATATAGTAGCCAAAATT+GGG | - | chr4_3:71227508-71227527 | None:intergenic | 25.0% |
| ! | TTCAATATAGTAGCCAAAAT+TGG | - | chr4_3:71227509-71227528 | None:intergenic | 25.0% |
| !!! | TGATTTTAGCTTTTAGGTTT+TGG | + | chr4_3:71227537-71227556 | Msa0660460:intron | 25.0% |
| !! | TTTGAAATTGAGATTGAATC+AGG | + | chr4_3:71227614-71227633 | Msa0660460:intron | 25.0% |
| !! | AATGGGCTTATATAAAACAT+AGG | - | chr4_3:71227693-71227712 | None:intergenic | 25.0% |
| ! | TATGAAATTGATCAGAAACT+TGG | + | chr4_3:71227832-71227851 | Msa0660460:intron | 25.0% |
| ! | ATAATGACATACTGATAGAA+TGG | + | chr4_3:71227956-71227975 | Msa0660460:intron | 25.0% |
| !!! | ACTATTTTTGTTGTTGAATC+AGG | + | chr4_3:71227979-71227998 | Msa0660460:intron | 25.0% |
| !! | TTAAAGTCACCAATGTTTTT+AGG | + | chr4_3:71228420-71228439 | Msa0660460:intron | 25.0% |
| !! | TTTTGCTAACCTAAAAACAT+TGG | - | chr4_3:71228432-71228451 | None:intergenic | 25.0% |
| ! | TAGCAAAAGTTACAGAAATT+TGG | + | chr4_3:71228444-71228463 | Msa0660460:intron | 25.0% |
| ! | TCAATATAGTAGCCAAAATT+GGG | - | chr4_3:71227508-71227527 | None:intergenic | 25.0% |
| ! | TTCAATATAGTAGCCAAAAT+TGG | - | chr4_3:71227509-71227528 | None:intergenic | 25.0% |
| !!! | TGATTTTAGCTTTTAGGTTT+TGG | + | chr4_3:71227537-71227556 | Msa0660460:intron | 25.0% |
| !! | TTTGAAATTGAGATTGAATC+AGG | + | chr4_3:71227614-71227633 | Msa0660460:intron | 25.0% |
| !! | AATGGGCTTATATAAAACAT+AGG | - | chr4_3:71227693-71227712 | None:intergenic | 25.0% |
| ! | TATGAAATTGATCAGAAACT+TGG | + | chr4_3:71227832-71227851 | Msa0660460:intron | 25.0% |
| ! | ATAATGACATACTGATAGAA+TGG | + | chr4_3:71227956-71227975 | Msa0660460:intron | 25.0% |
| !!! | ACTATTTTTGTTGTTGAATC+AGG | + | chr4_3:71227979-71227998 | Msa0660460:intron | 25.0% |
| !! | TTAAAGTCACCAATGTTTTT+AGG | + | chr4_3:71228420-71228439 | Msa0660460:intron | 25.0% |
| !! | TTTTGCTAACCTAAAAACAT+TGG | - | chr4_3:71228432-71228451 | None:intergenic | 25.0% |
| ! | TAGCAAAAGTTACAGAAATT+TGG | + | chr4_3:71228444-71228463 | Msa0660460:intron | 25.0% |
| ATGACCTAAAATAGAGATGT+TGG | - | chr4_3:71227450-71227469 | None:intergenic | 30.0% | |
| ! | TTCTTATAAACCCCCAATTT+TGG | + | chr4_3:71227493-71227512 | Msa0660460:intron | 30.0% |
| AATATAGTAGCCAAAATTGG+GGG | - | chr4_3:71227506-71227525 | None:intergenic | 30.0% | |
| CAATATAGTAGCCAAAATTG+GGG | - | chr4_3:71227507-71227526 | None:intergenic | 30.0% | |
| !!! | GTTTTGGCTACAATATCATT+AGG | + | chr4_3:71227553-71227572 | Msa0660460:intron | 30.0% |
| ! | GCTACAATATCATTAGGTTT+TGG | + | chr4_3:71227559-71227578 | Msa0660460:intron | 30.0% |
| GGATGAAGAATAATTACATC+AGG | + | chr4_3:71228000-71228019 | Msa0660460:intron | 30.0% | |
| !!! | ACAATTTTTTGCAGGTTTGT+GGG | - | chr4_3:71228178-71228197 | None:intergenic | 30.0% |
| ! | TAGATGTAAAAAGAGTGTGT+GGG | - | chr4_3:71228313-71228332 | None:intergenic | 30.0% |
| ! | ATAGATGTAAAAAGAGTGTG+TGG | - | chr4_3:71228314-71228333 | None:intergenic | 30.0% |
| ATCTATTCCTATCACTATTG+AGG | + | chr4_3:71228328-71228347 | Msa0660460:intron | 30.0% | |
| ATACATAAGTGAAACTTCGT+TGG | - | chr4_3:71228646-71228665 | None:intergenic | 30.0% | |
| ! | TTCGTGAACTTTTCAAAGAT+GGG | - | chr4_3:71228926-71228945 | None:intergenic | 30.0% |
| ! | ATTCGTGAACTTTTCAAAGA+TGG | - | chr4_3:71228927-71228946 | None:intergenic | 30.0% |
| !! | AATTTGCAACGATTTGTTGA+TGG | + | chr4_3:71228944-71228963 | Msa0660460:CDS | 30.0% |
| !! | ATTTGCAACGATTTGTTGAT+GGG | + | chr4_3:71228945-71228964 | Msa0660460:CDS | 30.0% |
| ATGACCTAAAATAGAGATGT+TGG | - | chr4_3:71227450-71227469 | None:intergenic | 30.0% | |
| ! | TTCTTATAAACCCCCAATTT+TGG | + | chr4_3:71227493-71227512 | Msa0660460:intron | 30.0% |
| AATATAGTAGCCAAAATTGG+GGG | - | chr4_3:71227506-71227525 | None:intergenic | 30.0% | |
| CAATATAGTAGCCAAAATTG+GGG | - | chr4_3:71227507-71227526 | None:intergenic | 30.0% | |
| !!! | GTTTTGGCTACAATATCATT+AGG | + | chr4_3:71227553-71227572 | Msa0660460:intron | 30.0% |
| ! | GCTACAATATCATTAGGTTT+TGG | + | chr4_3:71227559-71227578 | Msa0660460:intron | 30.0% |
| GGATGAAGAATAATTACATC+AGG | + | chr4_3:71228000-71228019 | Msa0660460:intron | 30.0% | |
| !!! | ACAATTTTTTGCAGGTTTGT+GGG | - | chr4_3:71228178-71228197 | None:intergenic | 30.0% |
| ! | TAGATGTAAAAAGAGTGTGT+GGG | - | chr4_3:71228313-71228332 | None:intergenic | 30.0% |
| ! | ATAGATGTAAAAAGAGTGTG+TGG | - | chr4_3:71228314-71228333 | None:intergenic | 30.0% |
| ATCTATTCCTATCACTATTG+AGG | + | chr4_3:71228328-71228347 | Msa0660460:intron | 30.0% | |
| ATACATAAGTGAAACTTCGT+TGG | - | chr4_3:71228646-71228665 | None:intergenic | 30.0% | |
| ! | TTCGTGAACTTTTCAAAGAT+GGG | - | chr4_3:71228926-71228945 | None:intergenic | 30.0% |
| ! | ATTCGTGAACTTTTCAAAGA+TGG | - | chr4_3:71228927-71228946 | None:intergenic | 30.0% |
| !! | AATTTGCAACGATTTGTTGA+TGG | + | chr4_3:71228944-71228963 | Msa0660460:CDS | 30.0% |
| !! | ATTTGCAACGATTTGTTGAT+GGG | + | chr4_3:71228945-71228964 | Msa0660460:CDS | 30.0% |
| !! | CTGTTTCTGTATTCTATCTG+AGG | - | chr4_3:71227281-71227300 | None:intergenic | 35.0% |
| ! | ACCACCAACATCTCTATTTT+AGG | + | chr4_3:71227443-71227462 | Msa0660460:five_prime_UTR | 35.0% |
| ACCTAAAATAGAGATGTTGG+TGG | - | chr4_3:71227447-71227466 | None:intergenic | 35.0% | |
| !!! | CACAATTTTTTGCAGGTTTG+TGG | - | chr4_3:71228179-71228198 | None:intergenic | 35.0% |
| ! | AGATGTAAAAAGAGTGTGTG+GGG | - | chr4_3:71228312-71228331 | None:intergenic | 35.0% |
| CTAACAACCTCAATAGTGAT+AGG | - | chr4_3:71228338-71228357 | None:intergenic | 35.0% | |
| AAATTCACACACGATAGCAT+GGG | - | chr4_3:71228398-71228417 | None:intergenic | 35.0% | |
| TAAATTCACACACGATAGCA+TGG | - | chr4_3:71228399-71228418 | None:intergenic | 35.0% | |
| GGAGAAAATGGTGAATAAGT+TGG | - | chr4_3:71228489-71228508 | None:intergenic | 35.0% | |
| AAACTTCGTTGGTGCAAAAA+TGG | - | chr4_3:71228635-71228654 | None:intergenic | 35.0% | |
| TTAACATCCGGATTTGACAA+AGG | - | chr4_3:71228737-71228756 | None:intergenic | 35.0% | |
| GTAATACATACTCCTCTAAG+TGG | - | chr4_3:71228764-71228783 | None:intergenic | 35.0% | |
| AAGTCCTGGAAAAGAAACAT+TGG | - | chr4_3:71228852-71228871 | None:intergenic | 35.0% | |
| ! | AACTTTTCAAAGATGGGTCA+AGG | - | chr4_3:71228920-71228939 | None:intergenic | 35.0% |
| GAAATCATTAGGAGGAAATC+CGG | - | chr4_3:71229036-71229055 | None:intergenic | 35.0% | |
| TTTCCTCCTAATGATTTCAC+CGG | + | chr4_3:71229038-71229057 | Msa0660460:CDS | 35.0% | |
| ATTTCACCGGTGAAATCATT+AGG | - | chr4_3:71229047-71229066 | None:intergenic | 35.0% | |
| !! | CTGTTTCTGTATTCTATCTG+AGG | - | chr4_3:71227281-71227300 | None:intergenic | 35.0% |
| ! | ACCACCAACATCTCTATTTT+AGG | + | chr4_3:71227443-71227462 | Msa0660460:five_prime_UTR | 35.0% |
| ACCTAAAATAGAGATGTTGG+TGG | - | chr4_3:71227447-71227466 | None:intergenic | 35.0% | |
| !!! | CACAATTTTTTGCAGGTTTG+TGG | - | chr4_3:71228179-71228198 | None:intergenic | 35.0% |
| ! | AGATGTAAAAAGAGTGTGTG+GGG | - | chr4_3:71228312-71228331 | None:intergenic | 35.0% |
| CTAACAACCTCAATAGTGAT+AGG | - | chr4_3:71228338-71228357 | None:intergenic | 35.0% | |
| AAATTCACACACGATAGCAT+GGG | - | chr4_3:71228398-71228417 | None:intergenic | 35.0% | |
| TAAATTCACACACGATAGCA+TGG | - | chr4_3:71228399-71228418 | None:intergenic | 35.0% | |
| GGAGAAAATGGTGAATAAGT+TGG | - | chr4_3:71228489-71228508 | None:intergenic | 35.0% | |
| AAACTTCGTTGGTGCAAAAA+TGG | - | chr4_3:71228635-71228654 | None:intergenic | 35.0% | |
| TTAACATCCGGATTTGACAA+AGG | - | chr4_3:71228737-71228756 | None:intergenic | 35.0% | |
| GTAATACATACTCCTCTAAG+TGG | - | chr4_3:71228764-71228783 | None:intergenic | 35.0% | |
| AAGTCCTGGAAAAGAAACAT+TGG | - | chr4_3:71228852-71228871 | None:intergenic | 35.0% | |
| ! | AACTTTTCAAAGATGGGTCA+AGG | - | chr4_3:71228920-71228939 | None:intergenic | 35.0% |
| GAAATCATTAGGAGGAAATC+CGG | - | chr4_3:71229036-71229055 | None:intergenic | 35.0% | |
| TTTCCTCCTAATGATTTCAC+CGG | + | chr4_3:71229038-71229057 | Msa0660460:CDS | 35.0% | |
| ATTTCACCGGTGAAATCATT+AGG | - | chr4_3:71229047-71229066 | None:intergenic | 35.0% | |
| GCATGTACTGAGATAGAAGA+AGG | - | chr4_3:71227327-71227346 | None:intergenic | 40.0% | |
| ! | GTTTATCGCAGTTTTCCACA+TGG | - | chr4_3:71227650-71227669 | None:intergenic | 40.0% |
| TGTGGAAAACTGCGATAAAC+TGG | + | chr4_3:71227650-71227669 | Msa0660460:intron | 40.0% | |
| GTGGAAAACTGCGATAAACT+GGG | + | chr4_3:71227651-71227670 | Msa0660460:intron | 40.0% | |
| !! | TTTTAGGGAACAGCAAATGC+AGG | + | chr4_3:71227738-71227757 | Msa0660460:intron | 40.0% |
| !!! | TTTTTTGCAGGTTTGTGGGA+AGG | - | chr4_3:71228174-71228193 | None:intergenic | 40.0% |
| TTCTCACTCTGAACAGCATT+CGG | + | chr4_3:71228280-71228299 | Msa0660460:five_prime_UTR | 40.0% | |
| TGAGAAGAGTAGTGTAGTAC+GGG | - | chr4_3:71228575-71228594 | None:intergenic | 40.0% | |
| GTGAGAAGAGTAGTGTAGTA+CGG | - | chr4_3:71228576-71228595 | None:intergenic | 40.0% | |
| TCCATCTTCAGAACTGGATA+TGG | + | chr4_3:71228599-71228618 | Msa0660460:CDS | 40.0% | |
| AGAAGAGTTGGATTCAAGGT+CGG | - | chr4_3:71228684-71228703 | None:intergenic | 40.0% | |
| AGTGAGAAGAGTTGGATTCA+AGG | - | chr4_3:71228688-71228707 | None:intergenic | 40.0% | |
| CTAAGTGGATGCTTAACATC+CGG | - | chr4_3:71228749-71228768 | None:intergenic | 40.0% | |
| GATGTTAAGCATCCACTTAG+AGG | + | chr4_3:71228749-71228768 | Msa0660460:CDS | 40.0% | |
| ! | AGTGCCAATGTTTCTTTTCC+AGG | + | chr4_3:71228845-71228864 | Msa0660460:intron | 40.0% |
| !! | TTGATGGGTTTGCTCAAATC+AGG | + | chr4_3:71228960-71228979 | Msa0660460:CDS | 40.0% |
| !! | TGATGGGTTTGCTCAAATCA+GGG | + | chr4_3:71228961-71228980 | Msa0660460:CDS | 40.0% |
| CAAATGCTTCAACTGGATTC+CGG | + | chr4_3:71229014-71229033 | Msa0660460:CDS | 40.0% | |
| GCATGTACTGAGATAGAAGA+AGG | - | chr4_3:71227327-71227346 | None:intergenic | 40.0% | |
| ! | GTTTATCGCAGTTTTCCACA+TGG | - | chr4_3:71227650-71227669 | None:intergenic | 40.0% |
| TGTGGAAAACTGCGATAAAC+TGG | + | chr4_3:71227650-71227669 | Msa0660460:intron | 40.0% | |
| GTGGAAAACTGCGATAAACT+GGG | + | chr4_3:71227651-71227670 | Msa0660460:intron | 40.0% | |
| !! | TTTTAGGGAACAGCAAATGC+AGG | + | chr4_3:71227738-71227757 | Msa0660460:intron | 40.0% |
| !!! | TTTTTTGCAGGTTTGTGGGA+AGG | - | chr4_3:71228174-71228193 | None:intergenic | 40.0% |
| TTCTCACTCTGAACAGCATT+CGG | + | chr4_3:71228280-71228299 | Msa0660460:five_prime_UTR | 40.0% | |
| TGAGAAGAGTAGTGTAGTAC+GGG | - | chr4_3:71228575-71228594 | None:intergenic | 40.0% | |
| GTGAGAAGAGTAGTGTAGTA+CGG | - | chr4_3:71228576-71228595 | None:intergenic | 40.0% | |
| TCCATCTTCAGAACTGGATA+TGG | + | chr4_3:71228599-71228618 | Msa0660460:CDS | 40.0% | |
| AGAAGAGTTGGATTCAAGGT+CGG | - | chr4_3:71228684-71228703 | None:intergenic | 40.0% | |
| AGTGAGAAGAGTTGGATTCA+AGG | - | chr4_3:71228688-71228707 | None:intergenic | 40.0% | |
| CTAAGTGGATGCTTAACATC+CGG | - | chr4_3:71228749-71228768 | None:intergenic | 40.0% | |
| GATGTTAAGCATCCACTTAG+AGG | + | chr4_3:71228749-71228768 | Msa0660460:CDS | 40.0% | |
| ! | AGTGCCAATGTTTCTTTTCC+AGG | + | chr4_3:71228845-71228864 | Msa0660460:intron | 40.0% |
| !! | TTGATGGGTTTGCTCAAATC+AGG | + | chr4_3:71228960-71228979 | Msa0660460:CDS | 40.0% |
| !! | TGATGGGTTTGCTCAAATCA+GGG | + | chr4_3:71228961-71228980 | Msa0660460:CDS | 40.0% |
| CAAATGCTTCAACTGGATTC+CGG | + | chr4_3:71229014-71229033 | Msa0660460:CDS | 40.0% | |
| TCTGAGGAAGTAGTGACTAG+TGG | - | chr4_3:71227265-71227284 | None:intergenic | 45.0% | |
| AAACTACAGCCACAAACACC+CGG | + | chr4_3:71227356-71227375 | Msa0660460:five_prime_UTR | 45.0% | |
| !! | TGTTGTGCTGGTTCTGCAAT+TGG | - | chr4_3:71227424-71227443 | None:intergenic | 45.0% |
| ! | TATCGCAGTTTTCCACATGG+TGG | - | chr4_3:71227647-71227666 | None:intergenic | 45.0% |
| !!! | GGTGAGGCACAATTTTTTGC+AGG | - | chr4_3:71228186-71228205 | None:intergenic | 45.0% |
| GAAGACTTCGGATTCATCAG+TGG | - | chr4_3:71228255-71228274 | None:intergenic | 45.0% | |
| ATGCTGTTCAGAGTGAGAAG+AGG | - | chr4_3:71228279-71228298 | None:intergenic | 45.0% | |
| TTAACCACGCACGGAGAAAA+TGG | - | chr4_3:71228501-71228520 | None:intergenic | 45.0% | |
| GGCATTCGAATTCGCATCAT+CGG | - | chr4_3:71228554-71228573 | None:intergenic | 45.0% | |
| CACTCTTCCATCTTCAGAAC+TGG | + | chr4_3:71228593-71228612 | Msa0660460:CDS | 45.0% | |
| !! | GCCATATCCAGTTCTGAAGA+TGG | - | chr4_3:71228603-71228622 | None:intergenic | 45.0% |
| AAGGTCGGAATCATCATCAG+TGG | - | chr4_3:71228669-71228688 | None:intergenic | 45.0% | |
| TTCTCACTCTCAGCCACAAT+TGG | + | chr4_3:71228700-71228719 | Msa0660460:CDS | 45.0% | |
| CAAGCCACCTTTGTCAAATC+CGG | + | chr4_3:71228727-71228746 | Msa0660460:CDS | 45.0% | |
| ACATCCGGATTTGACAAAGG+TGG | - | chr4_3:71228734-71228753 | None:intergenic | 45.0% | |
| TTCTGGCGTTTCTTAAGTCC+TGG | - | chr4_3:71228866-71228885 | None:intergenic | 45.0% | |
| CTTAAGAAACGCCAGAACGT+TGG | + | chr4_3:71228869-71228888 | Msa0660460:CDS | 45.0% | |
| AAGTGATTCGTCCAACGTTC+TGG | - | chr4_3:71228883-71228902 | None:intergenic | 45.0% | |
| ! | CGGAATCCAGTTGAAGCATT+TGG | - | chr4_3:71229016-71229035 | None:intergenic | 45.0% |
| TCACCGGTGAAATCATTAGG+AGG | - | chr4_3:71229044-71229063 | None:intergenic | 45.0% | |
| TCTGAGGAAGTAGTGACTAG+TGG | - | chr4_3:71227265-71227284 | None:intergenic | 45.0% | |
| AAACTACAGCCACAAACACC+CGG | + | chr4_3:71227356-71227375 | Msa0660460:five_prime_UTR | 45.0% | |
| !! | TGTTGTGCTGGTTCTGCAAT+TGG | - | chr4_3:71227424-71227443 | None:intergenic | 45.0% |
| ! | TATCGCAGTTTTCCACATGG+TGG | - | chr4_3:71227647-71227666 | None:intergenic | 45.0% |
| !!! | GGTGAGGCACAATTTTTTGC+AGG | - | chr4_3:71228186-71228205 | None:intergenic | 45.0% |
| GAAGACTTCGGATTCATCAG+TGG | - | chr4_3:71228255-71228274 | None:intergenic | 45.0% | |
| ATGCTGTTCAGAGTGAGAAG+AGG | - | chr4_3:71228279-71228298 | None:intergenic | 45.0% | |
| TTAACCACGCACGGAGAAAA+TGG | - | chr4_3:71228501-71228520 | None:intergenic | 45.0% | |
| GGCATTCGAATTCGCATCAT+CGG | - | chr4_3:71228554-71228573 | None:intergenic | 45.0% | |
| CACTCTTCCATCTTCAGAAC+TGG | + | chr4_3:71228593-71228612 | Msa0660460:CDS | 45.0% | |
| !! | GCCATATCCAGTTCTGAAGA+TGG | - | chr4_3:71228603-71228622 | None:intergenic | 45.0% |
| AAGGTCGGAATCATCATCAG+TGG | - | chr4_3:71228669-71228688 | None:intergenic | 45.0% | |
| TTCTCACTCTCAGCCACAAT+TGG | + | chr4_3:71228700-71228719 | Msa0660460:CDS | 45.0% | |
| CAAGCCACCTTTGTCAAATC+CGG | + | chr4_3:71228727-71228746 | Msa0660460:CDS | 45.0% | |
| ACATCCGGATTTGACAAAGG+TGG | - | chr4_3:71228734-71228753 | None:intergenic | 45.0% | |
| TTCTGGCGTTTCTTAAGTCC+TGG | - | chr4_3:71228866-71228885 | None:intergenic | 45.0% | |
| CTTAAGAAACGCCAGAACGT+TGG | + | chr4_3:71228869-71228888 | Msa0660460:CDS | 45.0% | |
| AAGTGATTCGTCCAACGTTC+TGG | - | chr4_3:71228883-71228902 | None:intergenic | 45.0% | |
| ! | CGGAATCCAGTTGAAGCATT+TGG | - | chr4_3:71229016-71229035 | None:intergenic | 45.0% |
| TCACCGGTGAAATCATTAGG+AGG | - | chr4_3:71229044-71229063 | None:intergenic | 45.0% | |
| GAGGAAGTAGTGACTAGTGG+CGG | - | chr4_3:71227262-71227281 | None:intergenic | 50.0% | |
| ! | AATTGGTGGACAGTGGTGGT+CGG | - | chr4_3:71227407-71227426 | None:intergenic | 50.0% |
| ! | GTTCTGCAATTGGTGGACAG+TGG | - | chr4_3:71227414-71227433 | None:intergenic | 50.0% |
| !! | TGTGCTGGTTCTGCAATTGG+TGG | - | chr4_3:71227421-71227440 | None:intergenic | 50.0% |
| !! | AGATGTTGGTGGTGTTGTGC+TGG | - | chr4_3:71227436-71227455 | None:intergenic | 50.0% |
| ACTGCGATAAACTGGGCATG+AGG | + | chr4_3:71227658-71227677 | Msa0660460:intron | 50.0% | |
| CTGCGATAAACTGGGCATGA+GGG | + | chr4_3:71227659-71227678 | Msa0660460:intron | 50.0% | |
| ! | CGAACCTGGAGGCACAATAT+CGG | - | chr4_3:71228207-71228226 | None:intergenic | 50.0% |
| TTCGGATTCATCAGTGGAGG+TGG | - | chr4_3:71228249-71228268 | None:intergenic | 50.0% | |
| GACTTCGGATTCATCAGTGG+AGG | - | chr4_3:71228252-71228271 | None:intergenic | 50.0% | |
| GTGAGAAGAGGCGAAGACTT+CGG | - | chr4_3:71228267-71228286 | None:intergenic | 50.0% | |
| ! | TTCACCATTTTCTCCGTGCG+TGG | + | chr4_3:71228494-71228513 | Msa0660460:intron | 50.0% |
| CTGCACTCATTAACCACGCA+CGG | - | chr4_3:71228510-71228529 | None:intergenic | 50.0% | |
| CTTCAGAACTGGATATGGCG+TGG | + | chr4_3:71228604-71228623 | Msa0660460:CDS | 50.0% | |
| TGGCTGAGAGTGAGAAGAGT+TGG | - | chr4_3:71228696-71228715 | None:intergenic | 50.0% | |
| !! | GGTGGCTTGTTGACCAATTG+TGG | - | chr4_3:71228716-71228735 | None:intergenic | 50.0% |
| GCTCGACCAAATGCTTCAAC+TGG | + | chr4_3:71229007-71229026 | Msa0660460:CDS | 50.0% | |
| GAGGAAGTAGTGACTAGTGG+CGG | - | chr4_3:71227262-71227281 | None:intergenic | 50.0% | |
| ! | AATTGGTGGACAGTGGTGGT+CGG | - | chr4_3:71227407-71227426 | None:intergenic | 50.0% |
| ! | GTTCTGCAATTGGTGGACAG+TGG | - | chr4_3:71227414-71227433 | None:intergenic | 50.0% |
| !! | TGTGCTGGTTCTGCAATTGG+TGG | - | chr4_3:71227421-71227440 | None:intergenic | 50.0% |
| !! | AGATGTTGGTGGTGTTGTGC+TGG | - | chr4_3:71227436-71227455 | None:intergenic | 50.0% |
| ACTGCGATAAACTGGGCATG+AGG | + | chr4_3:71227658-71227677 | Msa0660460:intron | 50.0% | |
| CTGCGATAAACTGGGCATGA+GGG | + | chr4_3:71227659-71227678 | Msa0660460:intron | 50.0% | |
| ! | CGAACCTGGAGGCACAATAT+CGG | - | chr4_3:71228207-71228226 | None:intergenic | 50.0% |
| TTCGGATTCATCAGTGGAGG+TGG | - | chr4_3:71228249-71228268 | None:intergenic | 50.0% | |
| GACTTCGGATTCATCAGTGG+AGG | - | chr4_3:71228252-71228271 | None:intergenic | 50.0% | |
| GTGAGAAGAGGCGAAGACTT+CGG | - | chr4_3:71228267-71228286 | None:intergenic | 50.0% | |
| ! | TTCACCATTTTCTCCGTGCG+TGG | + | chr4_3:71228494-71228513 | Msa0660460:intron | 50.0% |
| CTGCACTCATTAACCACGCA+CGG | - | chr4_3:71228510-71228529 | None:intergenic | 50.0% | |
| CTTCAGAACTGGATATGGCG+TGG | + | chr4_3:71228604-71228623 | Msa0660460:CDS | 50.0% | |
| TGGCTGAGAGTGAGAAGAGT+TGG | - | chr4_3:71228696-71228715 | None:intergenic | 50.0% | |
| !! | GGTGGCTTGTTGACCAATTG+TGG | - | chr4_3:71228716-71228735 | None:intergenic | 50.0% |
| GCTCGACCAAATGCTTCAAC+TGG | + | chr4_3:71229007-71229026 | Msa0660460:CDS | 50.0% | |
| ! | CTGCAATTGGTGGACAGTGG+TGG | - | chr4_3:71227411-71227430 | None:intergenic | 55.0% |
| TCAGGAAAGCTGCCACCATG+TGG | + | chr4_3:71227632-71227651 | Msa0660460:intron | 55.0% | |
| ! | CTGGAGGCACAATATCGGTG+AGG | - | chr4_3:71228202-71228221 | None:intergenic | 55.0% |
| CTCACCGATATTGTGCCTCC+AGG | + | chr4_3:71228200-71228219 | Msa0660460:five_prime_UTR | 55.0% | |
| ! | GAAGCATTTGGTCGAGCACC+TGG | - | chr4_3:71229004-71229023 | None:intergenic | 55.0% |
| ! | CTGCAATTGGTGGACAGTGG+TGG | - | chr4_3:71227411-71227430 | None:intergenic | 55.0% |
| TCAGGAAAGCTGCCACCATG+TGG | + | chr4_3:71227632-71227651 | Msa0660460:intron | 55.0% | |
| ! | CTGGAGGCACAATATCGGTG+AGG | - | chr4_3:71228202-71228221 | None:intergenic | 55.0% |
| CTCACCGATATTGTGCCTCC+AGG | + | chr4_3:71228200-71228219 | Msa0660460:five_prime_UTR | 55.0% | |
| ! | GAAGCATTTGGTCGAGCACC+TGG | - | chr4_3:71229004-71229023 | None:intergenic | 55.0% |
| TGGACAGTGGTGGTCGGTCA+GGG | - | chr4_3:71227401-71227420 | None:intergenic | 60.0% | |
| GTTCGCCCCTGCTCAGATGA+CGG | + | chr4_3:71228222-71228241 | Msa0660460:five_prime_UTR | 60.0% | |
| GTGGTCCGTCATCTGAGCAG+GGG | - | chr4_3:71228230-71228249 | None:intergenic | 60.0% | |
| GGTGGTCCGTCATCTGAGCA+GGG | - | chr4_3:71228231-71228250 | None:intergenic | 60.0% | |
| AGGTGGTCCGTCATCTGAGC+AGG | - | chr4_3:71228232-71228251 | None:intergenic | 60.0% | |
| !! | GCGTATTGATGATGCCCGCC+AGG | + | chr4_3:71228983-71229002 | Msa0660460:CDS | 60.0% |
| CATTTGGTCGAGCACCTGGC+GGG | - | chr4_3:71229000-71229019 | None:intergenic | 60.0% | |
| GCATTTGGTCGAGCACCTGG+CGG | - | chr4_3:71229001-71229020 | None:intergenic | 60.0% | |
| TGGACAGTGGTGGTCGGTCA+GGG | - | chr4_3:71227401-71227420 | None:intergenic | 60.0% | |
| GTTCGCCCCTGCTCAGATGA+CGG | + | chr4_3:71228222-71228241 | Msa0660460:five_prime_UTR | 60.0% | |
| GTGGTCCGTCATCTGAGCAG+GGG | - | chr4_3:71228230-71228249 | None:intergenic | 60.0% | |
| GGTGGTCCGTCATCTGAGCA+GGG | - | chr4_3:71228231-71228250 | None:intergenic | 60.0% | |
| AGGTGGTCCGTCATCTGAGC+AGG | - | chr4_3:71228232-71228251 | None:intergenic | 60.0% | |
| !! | GCGTATTGATGATGCCCGCC+AGG | + | chr4_3:71228983-71229002 | Msa0660460:CDS | 60.0% |
| CATTTGGTCGAGCACCTGGC+GGG | - | chr4_3:71229000-71229019 | None:intergenic | 60.0% | |
| GCATTTGGTCGAGCACCTGG+CGG | - | chr4_3:71229001-71229020 | None:intergenic | 60.0% | |
| GGTGGTGCACCGGGTGTTTG+TGG | - | chr4_3:71227368-71227387 | None:intergenic | 65.0% | |
| GGACAGTGGTGGTCGGTCAG+GGG | - | chr4_3:71227400-71227419 | None:intergenic | 65.0% | |
| GTGGACAGTGGTGGTCGGTC+AGG | - | chr4_3:71227402-71227421 | None:intergenic | 65.0% | |
| CATCTGAGCAGGGGCGAACC+TGG | - | chr4_3:71228221-71228240 | None:intergenic | 65.0% | |
| GGTGGTGCACCGGGTGTTTG+TGG | - | chr4_3:71227368-71227387 | None:intergenic | 65.0% | |
| GGACAGTGGTGGTCGGTCAG+GGG | - | chr4_3:71227400-71227419 | None:intergenic | 65.0% | |
| GTGGACAGTGGTGGTCGGTC+AGG | - | chr4_3:71227402-71227421 | None:intergenic | 65.0% | |
| CATCTGAGCAGGGGCGAACC+TGG | - | chr4_3:71228221-71228240 | None:intergenic | 65.0% | |
| ACACCCGGTGCACCACCCAC+CGG | + | chr4_3:71227371-71227390 | Msa0660460:five_prime_UTR | 70.0% | |
| CAGTGGTGGTCGGTCAGGGG+CGG | - | chr4_3:71227397-71227416 | None:intergenic | 70.0% | |
| CTGAGCAGGGGCGAACCTGG+AGG | - | chr4_3:71228218-71228237 | None:intergenic | 70.0% | |
| ACACCCGGTGCACCACCCAC+CGG | + | chr4_3:71227371-71227390 | Msa0660460:five_prime_UTR | 70.0% | |
| CAGTGGTGGTCGGTCAGGGG+CGG | - | chr4_3:71227397-71227416 | None:intergenic | 70.0% | |
| CTGAGCAGGGGCGAACCTGG+AGG | - | chr4_3:71228218-71228237 | None:intergenic | 70.0% | |
| ! | CGGCCGGTGGGTGGTGCACC+GGG | - | chr4_3:71227377-71227396 | None:intergenic | 80.0% |
| ! | GCGGCCGGTGGGTGGTGCAC+CGG | - | chr4_3:71227378-71227397 | None:intergenic | 80.0% |
| ! | GTCGGTCAGGGGCGGCCGGT+GGG | - | chr4_3:71227389-71227408 | None:intergenic | 80.0% |
| ! | GGTGGTCGGTCAGGGGCGGC+CGG | - | chr4_3:71227393-71227412 | None:intergenic | 80.0% |
| ! | CGGCCGGTGGGTGGTGCACC+GGG | - | chr4_3:71227377-71227396 | None:intergenic | 80.0% |
| ! | GCGGCCGGTGGGTGGTGCAC+CGG | - | chr4_3:71227378-71227397 | None:intergenic | 80.0% |
| ! | GTCGGTCAGGGGCGGCCGGT+GGG | - | chr4_3:71227389-71227408 | None:intergenic | 80.0% |
| ! | GGTGGTCGGTCAGGGGCGGC+CGG | - | chr4_3:71227393-71227412 | None:intergenic | 80.0% |
| ! | GGTCAGGGGCGGCCGGTGGG+TGG | - | chr4_3:71227386-71227405 | None:intergenic | 85.0% |
| ! | GGTCGGTCAGGGGCGGCCGG+TGG | - | chr4_3:71227390-71227409 | None:intergenic | 85.0% |
| ! | GGTCAGGGGCGGCCGGTGGG+TGG | - | chr4_3:71227386-71227405 | None:intergenic | 85.0% |
| ! | GGTCGGTCAGGGGCGGCCGG+TGG | - | chr4_3:71227390-71227409 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 71227257 | 71229067 | 71227257 | ID=Msa0660460;Name=Msa0660460 |
| chr4_3 | mRNA | 71227257 | 71229067 | 71227257 | ID=Msa0660460-mRNA-1;Parent=Msa0660460;Name=Msa0660460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=353|1|0.75|1|0.33|0|4|0|144 |
| chr4_3 | exon | 71227257 | 71227464 | 71227257 | ID=Msa0660460-mRNA-1:exon:21299;Parent=Msa0660460-mRNA-1 |
| chr4_3 | exon | 71228169 | 71228301 | 71228169 | ID=Msa0660460-mRNA-1:exon:21300;Parent=Msa0660460-mRNA-1 |
| chr4_3 | exon | 71228530 | 71228772 | 71228530 | ID=Msa0660460-mRNA-1:exon:21301;Parent=Msa0660460-mRNA-1 |
| chr4_3 | exon | 71228867 | 71229067 | 71228867 | ID=Msa0660460-mRNA-1:exon:21302;Parent=Msa0660460-mRNA-1 |
| chr4_3 | five_prime_UTR | 71227257 | 71227464 | 71227257 | ID=Msa0660460-mRNA-1:five_prime_utr;Parent=Msa0660460-mRNA-1 |
| chr4_3 | five_prime_UTR | 71228169 | 71228301 | 71228169 | ID=Msa0660460-mRNA-1:five_prime_utr;Parent=Msa0660460-mRNA-1 |
| chr4_3 | five_prime_UTR | 71228530 | 71228541 | 71228530 | ID=Msa0660460-mRNA-1:five_prime_utr;Parent=Msa0660460-mRNA-1 |
| chr4_3 | CDS | 71228542 | 71228772 | 71228542 | ID=Msa0660460-mRNA-1:cds;Parent=Msa0660460-mRNA-1 |
| chr4_3 | CDS | 71228867 | 71229067 | 71228867 | ID=Msa0660460-mRNA-1:cds;Parent=Msa0660460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
