AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548240 MtrunA17_Chr4g0031951 99.259 135 1 0 1 135 891 1025 9.51e-87 272
Msa0548240 MtrunA17_Chr2g0328561 92.481 133 10 0 1 133 913 1045 1.06e-79 253
Msa0548240 MtrunA17_Chr5g0435601 82.443 131 23 0 1 131 873 1003 1.41e-72 233
Msa0548240 MtrunA17_Chr1g0199451 78.125 128 28 0 1 128 843 970 8.82e-65 211
Msa0548240 MtrunA17_Chr2g0298151 59.829 117 47 0 1 117 857 973 6.85e-44 152
Msa0548240 MtrunA17_Chr2g0279091 30.702 114 75 1 1 114 83 192 1.23e-12 62.0
Msa0548240 MtrunA17_Chr1g0207641 32.174 115 74 1 14 128 352 462 2.74e-12 62.4
Msa0548240 MtrunA17_Chr2g0277751 31.132 106 69 1 8 113 4 105 5.28e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548240 AT2G29140.2 90.370 135 12 1 1 134 827 961 2.72e-78 249
Msa0548240 AT2G29140.1 90.370 135 12 1 1 134 827 961 2.72e-78 249
Msa0548240 AT2G29190.2 88.406 138 13 1 1 135 835 972 5.40e-76 243
Msa0548240 AT2G29190.1 88.406 138 13 1 1 135 835 972 5.40e-76 243
Msa0548240 AT2G29200.1 86.232 138 16 1 1 135 831 968 7.51e-76 242
Msa0548240 AT2G29200.2 86.232 138 16 1 1 135 831 968 7.51e-76 242
Msa0548240 AT3G10360.1 80.469 128 25 0 1 128 865 992 2.63e-69 224
Msa0548240 AT3G20250.1 61.667 120 46 0 1 120 781 900 3.91e-46 159
Msa0548240 AT3G20250.3 61.667 120 46 0 1 120 817 936 4.19e-46 159
Msa0548240 AT3G20250.2 61.667 120 46 0 1 120 817 936 4.19e-46 159
Msa0548240 AT4G25880.3 53.390 118 55 0 1 118 727 844 3.47e-37 134
Msa0548240 AT4G25880.4 53.390 118 55 0 1 118 733 850 3.61e-37 134
Msa0548240 AT4G25880.2 53.390 118 55 0 1 118 727 844 3.89e-37 134
Msa0548240 AT4G25880.1 53.390 118 55 0 1 118 733 850 4.13e-37 134
Msa0548240 AT4G25880.5 53.390 118 55 0 1 118 733 850 4.13e-37 134
Msa0548240 AT5G56510.4 30.693 101 66 1 14 114 494 590 7.84e-11 58.9
Msa0548240 AT5G56510.6 30.693 101 66 1 14 114 494 590 7.84e-11 58.9
Msa0548240 AT5G56510.2 30.693 101 66 1 14 114 494 590 7.84e-11 58.9
Msa0548240 AT5G56510.1 30.693 101 66 1 14 114 494 590 7.84e-11 58.9
Msa0548240 AT5G56510.3 30.693 101 66 1 14 114 494 590 7.84e-11 58.9

Find 44 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCTATGTATAAACTTAA+AGG 0.196753 4_1:+42001832 None:intergenic
TCATTTCCCTTATTCTCTTA+TGG 0.237837 4_1:-42001565 Msa0548240:three_prime_UTR
CACATGTTTCCAGCACCTTT+TGG 0.257902 4_1:+42002246 None:intergenic
CCCTGCTAACTCCTTTATTA+TGG 0.263261 4_1:+42002984 None:intergenic
CATTCTTCCATAAGAGAATA+AGG 0.268694 4_1:+42001558 None:intergenic
AAATTTATACTCATAATTAA+AGG 0.287208 4_1:+42001598 None:intergenic
GCATCTCACTGACTAGTATT+TGG 0.297311 4_1:+42002881 None:intergenic
GGATGAAAATGAGCCTCTTC+AGG 0.353867 4_1:-42002848 Msa0548240:intron
AAAGAATCAACTCACGTTGA+TGG 0.394955 4_1:+42002219 None:intergenic
TGCAAATTATGTTGTCCAAA+AGG 0.405660 4_1:-42002261 Msa0548240:CDS
TGAGCGTTCTACCATAATAA+AGG 0.420048 4_1:-42002995 Msa0548240:CDS
ACGGTGTAAAGAGTATAAAA+TGG 0.452374 4_1:-42001725 Msa0548240:three_prime_UTR
TCTCTATGTCACGCCTAAGC+AGG 0.468281 4_1:+42001984 None:intergenic
ACCATAATAAAGGAGTTAGC+AGG 0.471864 4_1:-42002985 Msa0548240:CDS
ACTCATAATTAAAGGACAAA+AGG 0.473520 4_1:+42001606 None:intergenic
CGCTAAATAACAGCATGTAC+TGG 0.478731 4_1:-42003034 None:intergenic
TATAATGATAATAAAACAAA+AGG 0.480353 4_1:+42001526 None:intergenic
ATTCTTCCATAAGAGAATAA+GGG 0.480358 4_1:+42001559 None:intergenic
GTTGATTCTTTCGCGGATCA+AGG 0.482294 4_1:-42002207 Msa0548240:CDS
ACTAGTATTTGGCGTTCTGC+AGG 0.492274 4_1:+42002892 None:intergenic
TTATGTTGTCCAAAAGGTGC+TGG 0.500111 4_1:-42002255 Msa0548240:CDS
GTAGAGAAACTTGTTGCTGC+TGG 0.508762 4_1:-42002131 Msa0548240:CDS
ATGAAGAAGCAGCTTGCACT+AGG 0.523389 4_1:+42001927 None:intergenic
AACAGCATGTACTGGAACAT+GGG 0.530673 4_1:-42003026 None:intergenic
AACGTGAGTTGATTCTTTCG+CGG 0.537306 4_1:-42002214 Msa0548240:CDS
ATACTAGTCAGTGAGATGCT+TGG 0.551333 4_1:-42002877 Msa0548240:CDS
TAACAGCATGTACTGGAACA+TGG 0.552212 4_1:-42003027 None:intergenic
TTCAATCAGCGGAAACACAT+AGG 0.554613 4_1:+42001898 None:intergenic
CAGACACTTCTCCACAACAT+TGG 0.558684 4_1:+42002927 None:intergenic
ACACTTCTCCACAACATTGG+AGG 0.559112 4_1:+42002930 None:intergenic
GCGTTCTGCAGGACCACTGA+AGG 0.559249 4_1:+42002903 None:intergenic
TCAGACTCCTCAACCTGCTT+AGG 0.568481 4_1:-42001997 Msa0548240:exon
TGTTGTTGCAGAGAGAAGAA+TGG 0.573757 4_1:-42002024 Msa0548240:intron
CAGTGAGATGCTTGGAACCA+CGG 0.584655 4_1:-42002869 Msa0548240:CDS
CCATAATAAAGGAGTTAGCA+GGG 0.589588 4_1:-42002984 Msa0548240:CDS
AAAGTTTGCCTCCAATGTTG+TGG 0.596529 4_1:-42002938 Msa0548240:CDS
GAGAAGTGTCTGACCTTCAG+TGG 0.600770 4_1:-42002916 Msa0548240:CDS
TGTCACGCCTAAGCAGGTTG+AGG 0.603224 4_1:+42001990 None:intergenic
TGCGACGATGTGCTTTCCAT+AGG 0.603355 4_1:+42002157 None:intergenic
CATAGATTTCAAGCAAGATG+AGG 0.609826 4_1:-42001818 Msa0548240:three_prime_UTR
TCTCTTATGGAAGAATGTGA+CGG 0.630460 4_1:-42001552 Msa0548240:three_prime_UTR
ATTATGGTAGAACGCTCATG+AGG 0.642626 4_1:+42003000 None:intergenic
GAGAAACTTGTTGCTGCTGG+AGG 0.648155 4_1:-42002128 Msa0548240:intron
GTAAAGAGTATAAAATGGTG+AGG 0.656250 4_1:-42001720 Msa0548240:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATACTCATAATTAA+AGG + chr4_1:42002955-42002974 None:intergenic 10.0%
!! AAATTTATACTCATAATTAA+AGG + chr4_1:42002955-42002974 None:intergenic 10.0%
!! TAAAAGTAAAAAAAAGTCAA+GGG + chr4_1:42001912-42001931 None:intergenic 15.0%
!! TTAAAAGTAAAAAAAAGTCA+AGG + chr4_1:42001913-42001932 None:intergenic 15.0%
!!! TTTTTTTTACTTTTAACACT+TGG - chr4_1:42001917-42001936 Msa0548240:three_prime_UTR 15.0%
!! AAATCTATGTATAAACTTAA+AGG + chr4_1:42002721-42002740 None:intergenic 15.0%
!!! ATGAGTATAAATTTTCTTTA+AGG - chr4_1:42002961-42002980 Msa0548240:CDS 15.0%
!! TAAAAGTAAAAAAAAGTCAA+GGG + chr4_1:42001912-42001931 None:intergenic 15.0%
!! TTAAAAGTAAAAAAAAGTCA+AGG + chr4_1:42001913-42001932 None:intergenic 15.0%
!!! TTTTTTTTACTTTTAACACT+TGG - chr4_1:42001917-42001936 Msa0548240:three_prime_UTR 15.0%
!! AAATCTATGTATAAACTTAA+AGG + chr4_1:42002721-42002740 None:intergenic 15.0%
!!! ATGAGTATAAATTTTCTTTA+AGG - chr4_1:42002961-42002980 Msa0548240:CDS 15.0%
!!! ATGTATTACTCATCAATTTT+AGG - chr4_1:42001749-42001768 Msa0548240:three_prime_UTR 20.0%
!! GGATTTAAAAATGTATATTG+TGG + chr4_1:42001782-42001801 None:intergenic 20.0%
!!! CTTTTTCTTTATCAAATGTA+CGG - chr4_1:42002913-42002932 Msa0548240:CDS 20.0%
!!! ATGTATTACTCATCAATTTT+AGG - chr4_1:42001749-42001768 Msa0548240:three_prime_UTR 20.0%
!! GGATTTAAAAATGTATATTG+TGG + chr4_1:42001782-42001801 None:intergenic 20.0%
!!! CTTTTTCTTTATCAAATGTA+CGG - chr4_1:42002913-42002932 Msa0548240:CDS 20.0%
!! TTGATATTATACCTAGTCTT+AGG - chr4_1:42001818-42001837 Msa0548240:three_prime_UTR 25.0%
! TAACTGAACAACTAACAAAA+TGG + chr4_1:42002191-42002210 None:intergenic 25.0%
! TTACAACGATAGAATAAGAA+TGG + chr4_1:42002465-42002484 None:intergenic 25.0%
!!! ACAACTTTATTTTCAATCAG+CGG + chr4_1:42002666-42002685 None:intergenic 25.0%
! ACTCATAATTAAAGGACAAA+AGG + chr4_1:42002947-42002966 None:intergenic 25.0%
! ATTCTTCCATAAGAGAATAA+GGG + chr4_1:42002994-42003013 None:intergenic 25.0%
!! TTGATATTATACCTAGTCTT+AGG - chr4_1:42001818-42001837 Msa0548240:three_prime_UTR 25.0%
! TAACTGAACAACTAACAAAA+TGG + chr4_1:42002191-42002210 None:intergenic 25.0%
! TTACAACGATAGAATAAGAA+TGG + chr4_1:42002465-42002484 None:intergenic 25.0%
!!! ACAACTTTATTTTCAATCAG+CGG + chr4_1:42002666-42002685 None:intergenic 25.0%
! ACTCATAATTAAAGGACAAA+AGG + chr4_1:42002947-42002966 None:intergenic 25.0%
! ATTCTTCCATAAGAGAATAA+GGG + chr4_1:42002994-42003013 None:intergenic 25.0%
! CATTTTTAAATCCACTGTCT+CGG - chr4_1:42001789-42001808 Msa0548240:three_prime_UTR 30.0%
! ATGATTTGAAACCTAAGACT+AGG + chr4_1:42001832-42001851 None:intergenic 30.0%
AGTAAAAAAAAGTCAAGGGA+TGG + chr4_1:42001908-42001927 None:intergenic 30.0%
CAAGAACGAATATGTGATAT+TGG + chr4_1:42002089-42002108 None:intergenic 30.0%
CAAAGAATTATAAGGATGGT+TGG + chr4_1:42002117-42002136 None:intergenic 30.0%
CAGTCAAAGAATTATAAGGA+TGG + chr4_1:42002121-42002140 None:intergenic 30.0%
CATCCTTATAATTCTTTGAC+TGG - chr4_1:42002119-42002138 Msa0548240:intron 30.0%
CAACCAGTCAAAGAATTATA+AGG + chr4_1:42002125-42002144 None:intergenic 30.0%
! ATTTTGCATAACATACGAAG+AGG + chr4_1:42002223-42002242 None:intergenic 30.0%
TGCAAATTATGTTGTCCAAA+AGG - chr4_1:42002289-42002308 Msa0548240:intron 30.0%
! GCATTGAAAAAGTATACCTA+TGG - chr4_1:42002377-42002396 Msa0548240:intron 30.0%
AAGAATGGAAAGGATTAGAT+AGG + chr4_1:42002450-42002469 None:intergenic 30.0%
ACGATAGAATAAGAATGGAA+AGG + chr4_1:42002460-42002479 None:intergenic 30.0%
GTAATCACATCACATGTTAA+TGG - chr4_1:42002481-42002500 Msa0548240:intron 30.0%
GCAACAACAAATTACATGAA+CGG + chr4_1:42002515-42002534 None:intergenic 30.0%
! ATATTTTCATCTTCTCTGCA+GGG + chr4_1:42002769-42002788 None:intergenic 30.0%
! ACGGTGTAAAGAGTATAAAA+TGG - chr4_1:42002825-42002844 Msa0548240:intron 30.0%
! GTAAAGAGTATAAAATGGTG+AGG - chr4_1:42002830-42002849 Msa0548240:intron 30.0%
TGTACAAAAATGATGCTATG+TGG - chr4_1:42002873-42002892 Msa0548240:CDS 30.0%
TCATTTCCCTTATTCTCTTA+TGG - chr4_1:42002985-42003004 Msa0548240:CDS 30.0%
CATTCTTCCATAAGAGAATA+AGG + chr4_1:42002995-42003014 None:intergenic 30.0%
! CATTTTTAAATCCACTGTCT+CGG - chr4_1:42001789-42001808 Msa0548240:three_prime_UTR 30.0%
! ATGATTTGAAACCTAAGACT+AGG + chr4_1:42001832-42001851 None:intergenic 30.0%
AGTAAAAAAAAGTCAAGGGA+TGG + chr4_1:42001908-42001927 None:intergenic 30.0%
CAAGAACGAATATGTGATAT+TGG + chr4_1:42002089-42002108 None:intergenic 30.0%
CAAAGAATTATAAGGATGGT+TGG + chr4_1:42002117-42002136 None:intergenic 30.0%
CAGTCAAAGAATTATAAGGA+TGG + chr4_1:42002121-42002140 None:intergenic 30.0%
CATCCTTATAATTCTTTGAC+TGG - chr4_1:42002119-42002138 Msa0548240:intron 30.0%
CAACCAGTCAAAGAATTATA+AGG + chr4_1:42002125-42002144 None:intergenic 30.0%
! ATTTTGCATAACATACGAAG+AGG + chr4_1:42002223-42002242 None:intergenic 30.0%
TGCAAATTATGTTGTCCAAA+AGG - chr4_1:42002289-42002308 Msa0548240:intron 30.0%
! GCATTGAAAAAGTATACCTA+TGG - chr4_1:42002377-42002396 Msa0548240:intron 30.0%
AAGAATGGAAAGGATTAGAT+AGG + chr4_1:42002450-42002469 None:intergenic 30.0%
ACGATAGAATAAGAATGGAA+AGG + chr4_1:42002460-42002479 None:intergenic 30.0%
GTAATCACATCACATGTTAA+TGG - chr4_1:42002481-42002500 Msa0548240:intron 30.0%
GCAACAACAAATTACATGAA+CGG + chr4_1:42002515-42002534 None:intergenic 30.0%
! ATATTTTCATCTTCTCTGCA+GGG + chr4_1:42002769-42002788 None:intergenic 30.0%
! ACGGTGTAAAGAGTATAAAA+TGG - chr4_1:42002825-42002844 Msa0548240:intron 30.0%
! GTAAAGAGTATAAAATGGTG+AGG - chr4_1:42002830-42002849 Msa0548240:intron 30.0%
TGTACAAAAATGATGCTATG+TGG - chr4_1:42002873-42002892 Msa0548240:CDS 30.0%
TCATTTCCCTTATTCTCTTA+TGG - chr4_1:42002985-42003004 Msa0548240:CDS 30.0%
CATTCTTCCATAAGAGAATA+AGG + chr4_1:42002995-42003014 None:intergenic 30.0%
TGAGCGTTCTACCATAATAA+AGG - chr4_1:42001555-42001574 Msa0548240:three_prime_UTR 35.0%
ACCATAATAAAGGAGTTAGC+AGG - chr4_1:42001565-42001584 Msa0548240:three_prime_UTR 35.0%
CCATAATAAAGGAGTTAGCA+GGG - chr4_1:42001566-42001585 Msa0548240:three_prime_UTR 35.0%
AGAGTTGAAAAAACCTGAAG+AGG + chr4_1:42001718-42001737 None:intergenic 35.0%
AATCCTAATATTGCATGAGC+TGG - chr4_1:42001874-42001893 Msa0548240:three_prime_UTR 35.0%
!! TAACACTTGGTTGATTTGAG+TGG - chr4_1:42001930-42001949 Msa0548240:three_prime_UTR 35.0%
!! TTGGTTGATTTGAGTGGTAA+GGG - chr4_1:42001936-42001955 Msa0548240:three_prime_UTR 35.0%
ATCATATCCCTCTTATATGC+AGG - chr4_1:42002247-42002266 Msa0548240:CDS 35.0%
ATCATTGCCTGCATATAAGA+GGG + chr4_1:42002257-42002276 None:intergenic 35.0%
AAAGAATCAACTCACGTTGA+TGG + chr4_1:42002334-42002353 None:intergenic 35.0%
CATAGATTTCAAGCAAGATG+AGG - chr4_1:42002732-42002751 Msa0548240:intron 35.0%
! CATATTTTCATCTTCTCTGC+AGG + chr4_1:42002770-42002789 None:intergenic 35.0%
!!! CTATACAAGCCCTTTTTTCA+CGG - chr4_1:42002806-42002825 Msa0548240:intron 35.0%
CTCTTTACACCGTGAAAAAA+GGG + chr4_1:42002818-42002837 None:intergenic 35.0%
ACTCTTTACACCGTGAAAAA+AGG + chr4_1:42002819-42002838 None:intergenic 35.0%
TCTCTTATGGAAGAATGTGA+CGG - chr4_1:42002998-42003017 Msa0548240:CDS 35.0%
TGAGCGTTCTACCATAATAA+AGG - chr4_1:42001555-42001574 Msa0548240:three_prime_UTR 35.0%
ACCATAATAAAGGAGTTAGC+AGG - chr4_1:42001565-42001584 Msa0548240:three_prime_UTR 35.0%
CCATAATAAAGGAGTTAGCA+GGG - chr4_1:42001566-42001585 Msa0548240:three_prime_UTR 35.0%
AGAGTTGAAAAAACCTGAAG+AGG + chr4_1:42001718-42001737 None:intergenic 35.0%
AATCCTAATATTGCATGAGC+TGG - chr4_1:42001874-42001893 Msa0548240:three_prime_UTR 35.0%
!! TAACACTTGGTTGATTTGAG+TGG - chr4_1:42001930-42001949 Msa0548240:three_prime_UTR 35.0%
!! TTGGTTGATTTGAGTGGTAA+GGG - chr4_1:42001936-42001955 Msa0548240:three_prime_UTR 35.0%
ATCATATCCCTCTTATATGC+AGG - chr4_1:42002247-42002266 Msa0548240:CDS 35.0%
ATCATTGCCTGCATATAAGA+GGG + chr4_1:42002257-42002276 None:intergenic 35.0%
AAAGAATCAACTCACGTTGA+TGG + chr4_1:42002334-42002353 None:intergenic 35.0%
CATAGATTTCAAGCAAGATG+AGG - chr4_1:42002732-42002751 Msa0548240:intron 35.0%
! CATATTTTCATCTTCTCTGC+AGG + chr4_1:42002770-42002789 None:intergenic 35.0%
!!! CTATACAAGCCCTTTTTTCA+CGG - chr4_1:42002806-42002825 Msa0548240:intron 35.0%
CTCTTTACACCGTGAAAAAA+GGG + chr4_1:42002818-42002837 None:intergenic 35.0%
ACTCTTTACACCGTGAAAAA+AGG + chr4_1:42002819-42002838 None:intergenic 35.0%
TCTCTTATGGAAGAATGTGA+CGG - chr4_1:42002998-42003017 Msa0548240:CDS 35.0%
ATTATGGTAGAACGCTCATG+AGG + chr4_1:42001553-42001572 None:intergenic 40.0%
CCCTGCTAACTCCTTTATTA+TGG + chr4_1:42001569-42001588 None:intergenic 40.0%
AAAGTTTGCCTCCAATGTTG+TGG - chr4_1:42001612-42001631 Msa0548240:three_prime_UTR 40.0%
! GCATCTCACTGACTAGTATT+TGG + chr4_1:42001672-42001691 None:intergenic 40.0%
ATACTAGTCAGTGAGATGCT+TGG - chr4_1:42001673-42001692 Msa0548240:three_prime_UTR 40.0%
AGTCCAGCTCATGCAATATT+AGG + chr4_1:42001880-42001899 None:intergenic 40.0%
!! CTTGGTTGATTTGAGTGGTA+AGG - chr4_1:42001935-42001954 Msa0548240:three_prime_UTR 40.0%
ATTCACCACGTGTGTTTAAC+TGG - chr4_1:42001979-42001998 Msa0548240:exon 40.0%
! GTGTTTAACTGGTTCTCTAG+TGG - chr4_1:42001990-42002009 Msa0548240:exon 40.0%
CATCATTGCCTGCATATAAG+AGG + chr4_1:42002258-42002277 None:intergenic 40.0%
! TTATGTTGTCCAAAAGGTGC+TGG - chr4_1:42002295-42002314 Msa0548240:intron 40.0%
!! AACGTGAGTTGATTCTTTCG+CGG - chr4_1:42002336-42002355 Msa0548240:intron 40.0%
TGTTGTTGCAGAGAGAAGAA+TGG - chr4_1:42002526-42002545 Msa0548240:intron 40.0%
TTCAATCAGCGGAAACACAT+AGG + chr4_1:42002655-42002674 None:intergenic 40.0%
ATTATGGTAGAACGCTCATG+AGG + chr4_1:42001553-42001572 None:intergenic 40.0%
CCCTGCTAACTCCTTTATTA+TGG + chr4_1:42001569-42001588 None:intergenic 40.0%
AAAGTTTGCCTCCAATGTTG+TGG - chr4_1:42001612-42001631 Msa0548240:three_prime_UTR 40.0%
! GCATCTCACTGACTAGTATT+TGG + chr4_1:42001672-42001691 None:intergenic 40.0%
ATACTAGTCAGTGAGATGCT+TGG - chr4_1:42001673-42001692 Msa0548240:three_prime_UTR 40.0%
AGTCCAGCTCATGCAATATT+AGG + chr4_1:42001880-42001899 None:intergenic 40.0%
!! CTTGGTTGATTTGAGTGGTA+AGG - chr4_1:42001935-42001954 Msa0548240:three_prime_UTR 40.0%
ATTCACCACGTGTGTTTAAC+TGG - chr4_1:42001979-42001998 Msa0548240:exon 40.0%
! GTGTTTAACTGGTTCTCTAG+TGG - chr4_1:42001990-42002009 Msa0548240:exon 40.0%
CATCATTGCCTGCATATAAG+AGG + chr4_1:42002258-42002277 None:intergenic 40.0%
! TTATGTTGTCCAAAAGGTGC+TGG - chr4_1:42002295-42002314 Msa0548240:intron 40.0%
!! AACGTGAGTTGATTCTTTCG+CGG - chr4_1:42002336-42002355 Msa0548240:intron 40.0%
TGTTGTTGCAGAGAGAAGAA+TGG - chr4_1:42002526-42002545 Msa0548240:intron 40.0%
TTCAATCAGCGGAAACACAT+AGG + chr4_1:42002655-42002674 None:intergenic 40.0%
ACACTTCTCCACAACATTGG+AGG + chr4_1:42001623-42001642 None:intergenic 45.0%
CAGACACTTCTCCACAACAT+TGG + chr4_1:42001626-42001645 None:intergenic 45.0%
ACTAGTATTTGGCGTTCTGC+AGG + chr4_1:42001661-42001680 None:intergenic 45.0%
! AAGAGGCTCATTTTCATCCG+TGG + chr4_1:42001701-42001720 None:intergenic 45.0%
GGATGAAAATGAGCCTCTTC+AGG - chr4_1:42001702-42001721 Msa0548240:three_prime_UTR 45.0%
ATCAAAAGCTTCCGAGACAG+TGG + chr4_1:42001803-42001822 None:intergenic 45.0%
GATTTGAGTGGTAAGGGACT+CGG - chr4_1:42001942-42001961 Msa0548240:three_prime_UTR 45.0%
GAGAACCAGTTAAACACACG+TGG + chr4_1:42001987-42002006 None:intergenic 45.0%
! ACTGGTTCTCTAGTGGAGAT+AGG - chr4_1:42001997-42002016 Msa0548240:exon 45.0%
! CACATGTTTCCAGCACCTTT+TGG + chr4_1:42002307-42002326 None:intergenic 45.0%
! GTTGATTCTTTCGCGGATCA+AGG - chr4_1:42002343-42002362 Msa0548240:intron 45.0%
!! GTAGAGAAACTTGTTGCTGC+TGG - chr4_1:42002419-42002438 Msa0548240:intron 45.0%
ATGAAGAAGCAGCTTGCACT+AGG + chr4_1:42002626-42002645 None:intergenic 45.0%
ACACTTCTCCACAACATTGG+AGG + chr4_1:42001623-42001642 None:intergenic 45.0%
CAGACACTTCTCCACAACAT+TGG + chr4_1:42001626-42001645 None:intergenic 45.0%
ACTAGTATTTGGCGTTCTGC+AGG + chr4_1:42001661-42001680 None:intergenic 45.0%
! AAGAGGCTCATTTTCATCCG+TGG + chr4_1:42001701-42001720 None:intergenic 45.0%
GGATGAAAATGAGCCTCTTC+AGG - chr4_1:42001702-42001721 Msa0548240:three_prime_UTR 45.0%
ATCAAAAGCTTCCGAGACAG+TGG + chr4_1:42001803-42001822 None:intergenic 45.0%
GATTTGAGTGGTAAGGGACT+CGG - chr4_1:42001942-42001961 Msa0548240:three_prime_UTR 45.0%
GAGAACCAGTTAAACACACG+TGG + chr4_1:42001987-42002006 None:intergenic 45.0%
! ACTGGTTCTCTAGTGGAGAT+AGG - chr4_1:42001997-42002016 Msa0548240:exon 45.0%
! CACATGTTTCCAGCACCTTT+TGG + chr4_1:42002307-42002326 None:intergenic 45.0%
! GTTGATTCTTTCGCGGATCA+AGG - chr4_1:42002343-42002362 Msa0548240:intron 45.0%
!! GTAGAGAAACTTGTTGCTGC+TGG - chr4_1:42002419-42002438 Msa0548240:intron 45.0%
ATGAAGAAGCAGCTTGCACT+AGG + chr4_1:42002626-42002645 None:intergenic 45.0%
!! GAGAAGTGTCTGACCTTCAG+TGG - chr4_1:42001634-42001653 Msa0548240:three_prime_UTR 50.0%
CAGTGAGATGCTTGGAACCA+CGG - chr4_1:42001681-42001700 Msa0548240:three_prime_UTR 50.0%
TGCGACGATGTGCTTTCCAT+AGG + chr4_1:42002396-42002415 None:intergenic 50.0%
!! GAGAAACTTGTTGCTGCTGG+AGG - chr4_1:42002422-42002441 Msa0548240:intron 50.0%
TCAGACTCCTCAACCTGCTT+AGG - chr4_1:42002553-42002572 Msa0548240:intron 50.0%
TCTCTATGTCACGCCTAAGC+AGG + chr4_1:42002569-42002588 None:intergenic 50.0%
!! GAGAAGTGTCTGACCTTCAG+TGG - chr4_1:42001634-42001653 Msa0548240:three_prime_UTR 50.0%
CAGTGAGATGCTTGGAACCA+CGG - chr4_1:42001681-42001700 Msa0548240:three_prime_UTR 50.0%
TGCGACGATGTGCTTTCCAT+AGG + chr4_1:42002396-42002415 None:intergenic 50.0%
!! GAGAAACTTGTTGCTGCTGG+AGG - chr4_1:42002422-42002441 Msa0548240:intron 50.0%
TCAGACTCCTCAACCTGCTT+AGG - chr4_1:42002553-42002572 Msa0548240:intron 50.0%
TCTCTATGTCACGCCTAAGC+AGG + chr4_1:42002569-42002588 None:intergenic 50.0%
TGTCACGCCTAAGCAGGTTG+AGG + chr4_1:42002563-42002582 None:intergenic 55.0%
TGTCACGCCTAAGCAGGTTG+AGG + chr4_1:42002563-42002582 None:intergenic 55.0%
GCGTTCTGCAGGACCACTGA+AGG + chr4_1:42001650-42001669 None:intergenic 60.0%
GCGTTCTGCAGGACCACTGA+AGG + chr4_1:42001650-42001669 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 42001529 42003043 42001529 ID=Msa0548240;Name=Msa0548240
chr4_1 mRNA 42001529 42003043 42001529 ID=Msa0548240-mRNA-1;Parent=Msa0548240;Name=Msa0548240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|469|135
chr4_1 exon 42001529 42002035 42001529 ID=Msa0548240-mRNA-1:exon:10868;Parent=Msa0548240-mRNA-1
chr4_1 exon 42002129 42002303 42002129 ID=Msa0548240-mRNA-1:exon:10867;Parent=Msa0548240-mRNA-1
chr4_1 exon 42002849 42003043 42002849 ID=Msa0548240-mRNA-1:exon:10866;Parent=Msa0548240-mRNA-1
chr4_1 CDS 42002849 42003043 42002849 ID=Msa0548240-mRNA-1:cds;Parent=Msa0548240-mRNA-1
chr4_1 CDS 42002129 42002303 42002129 ID=Msa0548240-mRNA-1:cds;Parent=Msa0548240-mRNA-1
chr4_1 CDS 42001998 42002035 42001998 ID=Msa0548240-mRNA-1:cds;Parent=Msa0548240-mRNA-1
chr4_1 three_prime_UTR 42001529 42001997 42001529 ID=Msa0548240-mRNA-1:three_prime_utr;Parent=Msa0548240-mRNA-1
Gene Sequence

>Msa0548240

CATGTACTGGAACATGGGAAGCCTCATGAGCGTTCTACCATAATAAAGGAGTTAGCAGGGAAGATAGTTCAAATGAGTCAACAAAAGTTTGCCTCCAATGTTGTGGAGAAGTGTCTGACCTTCAGTGGTCCTGCAGAACGCCAAATACTAGTCAGTGAGATGCTTGGAACCACGGATGAAAATGAGCCTCTTCAGGCAATGATGAAAGATCAATTTGCAAATTATGTTGTCCAAAAGGTGCTGGAAACATGTGACGACCATCAACGTGAGTTGATTCTTTCGCGGATCAAGGTTCATTTGAACGCATTGAAAAAGTATACCTATGGAAAGCACATCGTCGCACGTGTAGAGAAACTTGTTGCTGCTGGAGAGAGAAGAATGGCTGCTCAGACTCCTCAACCTGCTTAG

Protein sequence

>Msa0548240

HVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVVEKCLTFSGPAERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRMAAQTPQPA*