AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236960 MtrunA17_Chr2g0286151 98.340 482 4 1 1 478 1 482 0.0 941
Msa0236960 MtrunA17_Chr4g0066941 66.805 482 120 6 11 460 18 491 0.0 541
Msa0236960 MtrunA17_Chr1g0195891 49.862 363 148 10 1 349 1 343 2.64e-97 297
Msa0236960 MtrunA17_Chr7g0249221 42.079 404 195 11 26 413 8 388 6.11e-93 288
Msa0236960 MtrunA17_Chr7g0249221 29.193 161 57 3 12 115 190 350 7.24e-12 67.0
Msa0236960 MtrunA17_Chr5g0438891 37.719 342 174 13 40 379 36 340 1.00e-59 201
Msa0236960 MtrunA17_Chr5g0438891 43.373 83 46 1 38 120 76 157 1.24e-17 84.7
Msa0236960 MtrunA17_Chr5g0438891 39.759 83 48 1 33 115 255 335 1.54e-12 69.3
Msa0236960 MtrunA17_Chr3g0116431 33.978 362 167 9 35 375 166 476 1.64e-54 190
Msa0236960 MtrunA17_Chr4g0058011 33.994 353 181 11 36 378 227 537 1.69e-52 186
Msa0236960 MtrunA17_Chr8g0356241 29.268 369 195 14 40 374 138 474 1.25e-29 121
Msa0236960 MtrunA17_Chr8g0356241 35.429 175 70 4 38 181 188 350 1.82e-27 115
Msa0236960 MtrunA17_Chr8g0356241 32.018 228 98 4 3 173 258 485 6.02e-27 113
Msa0236960 MtrunA17_Chr8g0356241 28.877 374 159 18 86 401 138 462 2.34e-16 81.6
Msa0236960 MtrunA17_Chr1g0195901 57.143 77 30 2 378 454 1 74 1.24e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236960 AT5G18550.1 51.064 470 200 13 11 469 15 465 2.22e-136 401
Msa0236960 AT5G18550.4 53.034 445 179 13 11 444 15 440 7.80e-136 399
Msa0236960 AT3G06410.1 56.140 399 155 8 8 395 12 401 1.93e-131 389
Msa0236960 AT2G47850.1 50.805 435 196 10 15 449 18 434 1.58e-130 386
Msa0236960 AT2G47850.3 50.805 435 196 10 15 449 18 434 1.58e-130 386
Msa0236960 AT5G18550.3 51.708 439 186 12 38 469 14 433 1.79e-130 385
Msa0236960 AT5G18550.2 49.362 470 195 13 11 469 15 452 8.25e-129 381
Msa0236960 AT2G47850.2 46.437 435 189 11 15 449 18 408 1.42e-107 327
Msa0236960 AT3G02830.1 41.146 384 168 10 26 390 18 362 2.65e-86 270
Msa0236960 AT3G02830.2 41.470 381 165 10 29 390 1 342 5.33e-86 269
Msa0236960 AT5G16540.1 40.811 370 149 11 26 386 19 327 3.43e-81 256
Msa0236960 AT5G16540.1 46.392 97 51 1 86 182 240 335 2.83e-19 89.7
Msa0236960 AT5G16540.1 38.144 97 60 0 22 118 222 318 6.55e-15 76.6
Msa0236960 AT5G16540.3 41.144 367 146 11 29 386 1 306 6.14e-81 255
Msa0236960 AT5G16540.3 46.392 97 51 1 86 182 219 314 3.27e-19 89.4
Msa0236960 AT5G16540.3 38.144 97 60 0 22 118 201 297 6.98e-15 76.3
Msa0236960 AT2G47850.4 46.988 332 149 8 124 449 2 312 1.77e-76 243
Msa0236960 AT2G47850.4 55.128 78 34 1 86 163 164 240 1.14e-22 99.4
Msa0236960 AT2G47850.4 41.304 92 54 0 37 128 161 252 4.04e-16 80.1
Msa0236960 AT5G16540.2 39.189 370 148 12 26 386 19 320 6.58e-74 238
Msa0236960 AT5G16540.2 41.237 97 49 1 86 182 240 328 5.64e-15 76.6
Msa0236960 AT5G16540.2 35.294 102 49 2 22 118 222 311 1.88e-13 72.0
Msa0236960 AT5G16540.4 40.000 330 128 11 29 349 1 269 4.49e-64 209
Msa0236960 AT5G63260.1 34.456 386 189 13 20 390 85 421 1.96e-57 196
Msa0236960 AT5G63260.2 33.000 400 192 13 20 390 85 437 1.58e-54 189
Msa0236960 AT3G48440.1 35.345 348 188 11 37 377 104 421 2.05e-53 186
Msa0236960 AT1G04990.1 32.615 371 188 9 21 387 34 346 5.63e-52 181
Msa0236960 AT1G04990.6 32.615 371 188 9 21 387 34 346 5.63e-52 181
Msa0236960 AT1G04990.2 32.615 371 188 9 21 387 34 346 5.63e-52 181
Msa0236960 AT1G04990.5 31.267 371 173 10 21 387 34 326 2.40e-46 166
Msa0236960 AT2G32930.2 31.316 380 206 10 40 411 41 373 1.50e-44 162
Msa0236960 AT2G32930.2 44.304 79 43 1 37 115 82 159 2.65e-16 81.6
Msa0236960 AT2G32930.3 31.316 380 206 10 40 411 14 346 2.32e-44 161
Msa0236960 AT2G32930.3 44.304 79 43 1 37 115 55 132 2.49e-16 81.6
Msa0236960 AT3G12680.1 32.410 361 186 13 40 374 171 499 3.03e-41 155
Msa0236960 AT3G12680.1 41.333 150 60 3 38 162 220 366 2.21e-31 127
Msa0236960 AT3G12680.1 40.476 168 58 5 41 167 338 504 5.11e-29 120
Msa0236960 AT3G12680.1 32.353 204 79 5 37 181 262 465 2.39e-24 106
Msa0236960 AT3G12680.1 41.000 100 45 2 39 124 416 515 3.27e-18 87.8
Msa0236960 AT2G32930.1 31.053 380 203 11 40 411 41 369 2.99e-40 150
Msa0236960 AT1G04990.3 30.405 296 156 7 96 387 16 265 4.00e-31 122
Msa0236960 AT1G04990.3 40.845 71 41 1 46 116 12 81 1.03e-14 75.5
Msa0236960 AT1G04990.3 43.421 76 42 1 88 163 179 253 8.58e-13 69.7
Msa0236960 AT1G04990.4 28.716 296 141 8 96 387 16 245 7.87e-26 107
Msa0236960 AT1G04990.4 43.939 66 36 1 51 116 17 81 1.20e-14 75.1
Msa0236960 AT1G48195.1 46.753 77 40 1 85 161 5 80 3.71e-17 76.6
Msa0236960 AT1G48195.1 42.308 78 45 0 296 373 3 80 3.01e-16 73.9
Msa0236960 AT1G48195.1 35.897 78 50 0 37 114 3 80 4.06e-11 59.7

Find 222 sgRNAs with CRISPR-Local

Find 472 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCTCCACACAGCTTTA+TGG 0.148543 2_2:-10029872 Msa0236960:CDS
ACTGGACCTTATCAACTTTC+TGG 0.159692 2_2:-10029815 Msa0236960:CDS
CCTCCTTGAATAATGATATT+TGG 0.185540 2_2:+10026233 None:intergenic
CTTCACATTGTTATGTTATA+TGG 0.187358 2_2:-10025746 Msa0236960:three_prime_UTR
GGACCTTCTTCACAACAAAT+TGG 0.188676 2_2:-10030142 Msa0236960:CDS
AGGACAAGATCTTGCAAATT+TGG 0.216539 2_2:-10030569 Msa0236960:CDS
CCATCCACATCTCCAATATT+TGG 0.224277 2_2:-10025988 Msa0236960:three_prime_UTR
AATTGCTACCTAATTCAAAA+AGG 0.241903 2_2:+10025868 None:intergenic
ATTCAAGGAGGTCGTCAAAT+AGG 0.248236 2_2:-10026221 Msa0236960:three_prime_UTR
TTCTGGCTGGGGTCCTTATC+AGG 0.252628 2_2:-10030029 Msa0236960:intron
CTAAGGACGGCATTCACTTT+TGG 0.274159 2_2:+10029644 None:intergenic
AATGGAATTGCAGATTCTTT+AGG 0.278667 2_2:+10026021 None:intergenic
CGAGTGCTTGATTGAGAAAC+AGG 0.284724 2_2:+10026377 None:intergenic
ACCTGTATTTAATATTTATA+GGG 0.285284 2_2:-10025806 Msa0236960:three_prime_UTR
CCATAATAATTTAGTGAAAC+AGG 0.285617 2_2:+10030494 None:intergenic
CTTGGTATTTGAACTTATTA+CGG 0.304251 2_2:-10025675 Msa0236960:three_prime_UTR
AACCTGTATTTAATATTTAT+AGG 0.308915 2_2:-10025807 Msa0236960:three_prime_UTR
GAATGTGGAACTGGGATAAC+TGG 0.314145 2_2:+10026179 None:intergenic
ACAAGCCCTGTACTTCCTTC+TGG 0.315539 2_2:-10029908 Msa0236960:CDS
TTGGCTCCACACAGCTTTAT+GGG 0.316108 2_2:-10029871 Msa0236960:CDS
TAAGGACCCCAGCCAGAAAA+AGG 0.327349 2_2:+10030034 None:intergenic
TCGTTCTGATTTCTGCTTGA+AGG 0.328571 2_2:+10029779 None:intergenic
CCTGTTTCACTAAATTATTA+TGG 0.341570 2_2:-10030494 Msa0236960:CDS
TAATGATACTCTGGTTGATT+AGG 0.346544 2_2:+10029737 None:intergenic
AGGTTATTGGAGCTGCTTCT+AGG 0.346914 2_2:-10030921 Msa0236960:CDS
GACCTTCTTCACAACAAATT+GGG 0.350087 2_2:-10030141 Msa0236960:CDS
GATTCTCAAACCGGTTTAGA+AGG 0.353209 2_2:-10031250 Msa0236960:intron
TGCAGAACCTATGTGGCAAT+TGG 0.353523 2_2:-10031159 Msa0236960:intron
TCTGGTTGATTAGGACTTGC+TGG 0.357396 2_2:+10029746 None:intergenic
GAGCTGCTTCTAGGACTGTT+GGG 0.358371 2_2:-10030912 Msa0236960:CDS
TTCAAGGAGGTCGTCAAATA+GGG 0.365715 2_2:-10026220 Msa0236960:three_prime_UTR
TTTACTGTTGAGAAATAATC+AGG 0.367051 2_2:-10025783 Msa0236960:three_prime_UTR
CAGCGTGGTATATGCAAGTT+TGG 0.367194 2_2:-10026650 Msa0236960:CDS
CCAGTTGCACCCTACTTTGT+GGG 0.372096 2_2:-10026554 Msa0236960:CDS
GAGAGAAAGTGAGGTGTTGT+TGG 0.372177 2_2:+10031405 None:intergenic
GCACAACAGACTCCAAATAT+TGG 0.375865 2_2:+10025976 None:intergenic
GCAGAACCTATGTGGCAATT+GGG 0.384400 2_2:-10031158 Msa0236960:intron
CATTACCCGGTGAAGGTAGC+TGG 0.387837 2_2:+10029843 None:intergenic
ATTGCTACTTGTCGTGGTAT+TGG 0.389271 2_2:+10026331 None:intergenic
AATGAGAGGTTCCGATGAAA+TGG 0.393509 2_2:+10031352 None:intergenic
TGCACTTACTATTTGAGAAC+TGG 0.397141 2_2:-10031089 Msa0236960:CDS
ACCAGTTGCACCCTACTTTG+TGG 0.400576 2_2:-10026555 Msa0236960:CDS
AATGCCGTCCTTAGCCCTGC+AGG 0.402972 2_2:-10029635 Msa0236960:CDS
CATTCACATTTCTTAATTTG+AGG 0.403952 2_2:+10026298 None:intergenic
AGCTCCATCGCCGGTTCCCC+CGG 0.406379 2_2:-10030224 Msa0236960:CDS
TCTAAACCGGTTTGAGAATC+CGG 0.406785 2_2:+10031253 None:intergenic
GTAAGTTCTGGCTGCAACTC+TGG 0.408260 2_2:+10026494 None:intergenic
CCCACAAAGTAGGGTGCAAC+TGG 0.414071 2_2:+10026554 None:intergenic
AGAGAAAGTGAGGTGTTGTT+GGG 0.414360 2_2:+10031406 None:intergenic
GCTAGATCTGAATGTGGAAC+TGG 0.415034 2_2:+10026170 None:intergenic
TCTAAAGCAAGGCGGCTGTA+TGG 0.415167 2_2:+10026050 None:intergenic
TCACCGGGTAATGCCTATAC+TGG 0.417112 2_2:-10029833 Msa0236960:CDS
AACTTACTGCAGGATCCAAC+AGG 0.417918 2_2:-10026478 Msa0236960:CDS
AAAAGGAAGCTCCTCTGGTT+TGG 0.424409 2_2:+10029709 None:intergenic
CCATAGGTCCATAGGGGCTC+TGG 0.431128 2_2:+10030077 None:intergenic
ACCCCAATTTGTTGTGAAGA+AGG 0.431547 2_2:+10030139 None:intergenic
GTGCAACTGGTACATCTGTC+AGG 0.431818 2_2:+10026567 None:intergenic
GTTGGCTTGACTTTGCCAAC+TGG 0.431997 2_2:-10026404 Msa0236960:CDS
TTGGATCCTGCAGTAAGTTC+TGG 0.432849 2_2:+10026482 None:intergenic
TAGGACTTCCAAAACAGAAA+TGG 0.433296 2_2:+10025843 None:intergenic
GGAGCTGCTTCTAGGACTGT+TGG 0.436466 2_2:-10030913 Msa0236960:CDS
AAAACGGGGCAATGCAAGTT+TGG 0.437807 2_2:-10030295 Msa0236960:CDS
GGTACATGTAAAGGTGAAAC+CGG 0.437936 2_2:+10030205 None:intergenic
GGAGCAAAAGGAAGCTCCTC+TGG 0.446002 2_2:+10029704 None:intergenic
CAACCAAATATCATTATTCA+AGG 0.446562 2_2:-10026236 Msa0236960:three_prime_UTR
GAAGATAGATTACTCTTCAA+TGG 0.448038 2_2:-10031326 Msa0236960:exon
CCTATGTGGCAATTGGGGTT+AGG 0.448878 2_2:-10031152 Msa0236960:CDS
TACTTTGTGGGTTCATCCGT+TGG 0.452836 2_2:-10026542 Msa0236960:CDS
GTTCTCATATGAAAGAAGAT+TGG 0.453505 2_2:+10025942 None:intergenic
CTGTAACTCAGTGGTGCAAT+AGG 0.453647 2_2:+10026605 None:intergenic
ACACATGGTCAATGAAAGTC+TGG 0.455737 2_2:+10025912 None:intergenic
ATAAATATTAAATACAGGTT+GGG 0.458655 2_2:+10025810 None:intergenic
TGTTTGTTTACCTTCTAAAC+CGG 0.458948 2_2:+10031240 None:intergenic
TCATCAGTAAGCACATCAAC+TGG 0.458973 2_2:-10026431 Msa0236960:CDS
CAGGTTGGGAAGTATTGAAT+AGG 0.463903 2_2:+10025824 None:intergenic
CAACTTTCTGGTTCCTCAGT+CGG 0.464302 2_2:-10029803 Msa0236960:CDS
GGACGTAACGGAAGCCCTGC+AGG 0.467084 2_2:+10029620 None:intergenic
TTCACAACAAATTGGGGTAC+TGG 0.467303 2_2:-10030134 Msa0236960:CDS
ATTTGTACACTAGCAGGAAC+TGG 0.472818 2_2:+10030250 None:intergenic
GGAGAACCAGAAGGAAGTAC+AGG 0.473748 2_2:+10029902 None:intergenic
ACCCTATAAATATTAAATAC+AGG 0.474157 2_2:+10025805 None:intergenic
TCAGTGGCTCCTGTCTGTTT+CGG 0.476235 2_2:+10030524 None:intergenic
TACCTATAAGATGGAGCAAA+AGG 0.476484 2_2:+10029692 None:intergenic
TAAGTGCAATCAACCTCATC+AGG 0.476914 2_2:+10031104 None:intergenic
TTATAATTAACAGGGTGAAA+AGG 0.477063 2_2:-10030335 Msa0236960:intron
CTAAAGCAAGGCGGCTGTAT+GGG 0.477236 2_2:+10026051 None:intergenic
GTGGTATTGGCAGGTGCTAA+AGG 0.477705 2_2:+10026344 None:intergenic
ACTGATGACGATATTCTAGA+AGG 0.479935 2_2:+10026446 None:intergenic
TCGTTTGTCCAGAGCCCCTA+TGG 0.481665 2_2:-10030085 Msa0236960:CDS
GTCTGTACGGTTGGATACAA+TGG 0.485124 2_2:+10030172 None:intergenic
TCTGGTTCTCCAGCTAATGT+TGG 0.486127 2_2:-10029890 Msa0236960:CDS
TCTGTACGGTTGGATACAAT+GGG 0.486783 2_2:+10030173 None:intergenic
ACCGGACCGGATTCTCAAAC+CGG 0.487073 2_2:-10031259 Msa0236960:CDS
ACCCTTCCTTTCCATTTCAT+CGG 0.487503 2_2:-10031363 Msa0236960:five_prime_UTR
CCAGAGCCCCTATGGACCTA+TGG 0.489000 2_2:-10030077 Msa0236960:CDS
CCTAACCCCAATTGCCACAT+AGG 0.489648 2_2:+10031152 None:intergenic
TATAAATATTAAATACAGGT+TGG 0.489912 2_2:+10025809 None:intergenic
ACAGGCTGTCCAACACGTTC+AGG 0.492536 2_2:+10030883 None:intergenic
GTGGCTTTGGTCCTAGGTGT+CGG 0.493197 2_2:-10031061 Msa0236960:CDS
TGTGTGGAGCCAACATTAGC+TGG 0.495140 2_2:+10029881 None:intergenic
AACCTGATCCGTCTTCTCAA+TGG 0.496083 2_2:-10031282 Msa0236960:CDS
ACGGAAGCCCTGCAGGGCTA+AGG 0.497525 2_2:+10029627 None:intergenic
CCAACCGTACAGACTCCATC+TGG 0.498384 2_2:-10030163 Msa0236960:CDS
GGACAATACCATAGGTCCAT+AGG 0.499115 2_2:+10030069 None:intergenic
AGAGAGAGACCAATAAAAGA+AGG 0.500751 2_2:-10031581 None:intergenic
GGATACAATGGGGAAGGTAC+TGG 0.505178 2_2:+10030184 None:intergenic
CTTTGATCTTGAATAAAACA+TGG 0.505754 2_2:-10026096 Msa0236960:three_prime_UTR
ATTCACATTTCTTAATTTGA+GGG 0.507428 2_2:+10026299 None:intergenic
CTACTTGTCGTGGTATTGGC+AGG 0.509824 2_2:+10026335 None:intergenic
TGCAGGGCTTCCGTTACGTC+CGG 0.510700 2_2:-10029618 Msa0236960:intron
GTCCATTGAGAAGACGGATC+AGG 0.511766 2_2:+10031280 None:intergenic
TTGGCTTGACCTACCTGATA+AGG 0.513240 2_2:+10030016 None:intergenic
TTGAAATGCAGTATTATATG+AGG 0.513604 2_2:-10030589 Msa0236960:intron
GACAATACCATAGGTCCATA+GGG 0.514835 2_2:+10030070 None:intergenic
GATAACCCAGCTACCTTCAC+CGG 0.517819 2_2:-10029849 Msa0236960:CDS
GGCTTGACTTTGCCAACTGG+TGG 0.521772 2_2:-10026401 Msa0236960:CDS
TGTTGGACAGCCTGTGTGCC+AGG 0.522566 2_2:-10030875 Msa0236960:intron
GAAGGTACTGGTACATGTAA+AGG 0.528560 2_2:+10030196 None:intergenic
AAATGGAAAGGAAGGGTGGT+TGG 0.531666 2_2:+10031369 None:intergenic
CCAGATGGAGTCTGTACGGT+TGG 0.533223 2_2:+10030163 None:intergenic
AGCACATCAACTGGATCAGT+TGG 0.533767 2_2:-10026422 Msa0236960:CDS
TTAGGAGTTATTCTAAAGCA+AGG 0.534715 2_2:+10026039 None:intergenic
GAGGAACCAGAAAGTTGATA+AGG 0.535581 2_2:+10029809 None:intergenic
TTTATTCAAGATCAAAGGAA+TGG 0.535890 2_2:+10026102 None:intergenic
TTCCGATGAAATGGAAAGGA+AGG 0.536074 2_2:+10031361 None:intergenic
ATGGGTTGCTAAAGTTCTCA+TGG 0.536241 2_2:+10026069 None:intergenic
CCAAATATTGGAGATGTGGA+TGG 0.543002 2_2:+10025988 None:intergenic
GCTGGAATTTGTACACTAGC+AGG 0.543649 2_2:+10030244 None:intergenic
TTCACATTTCTTAATTTGAG+GGG 0.545538 2_2:+10026300 None:intergenic
TATCATCATCCGAAACAGAC+AGG 0.545794 2_2:-10030533 Msa0236960:CDS
GGATGATCAAATTTGCATGC+AGG 0.545853 2_2:+10026626 None:intergenic
GAAATCATTACCGGACGTAA+CGG 0.546095 2_2:+10029608 None:intergenic
TATATACATACCGGACGTAA+CGG 0.546577 2_2:+10030467 None:intergenic
TGGTACATCTGTCAGGGAAG+AGG 0.547265 2_2:+10026574 None:intergenic
ACGGATGAACCCACAAAGTA+GGG 0.550114 2_2:+10026545 None:intergenic
GACTCCAAATATTGGAGATG+TGG 0.555876 2_2:+10025984 None:intergenic
AGCTGCTTCTAGGACTGTTG+GGG 0.557759 2_2:-10030911 Msa0236960:CDS
GAGAGAGACCAATAAAAGAA+GGG 0.560652 2_2:-10031580 None:intergenic
TTGGAGTAATAATGATACTC+TGG 0.560717 2_2:+10029728 None:intergenic
CATAATAATTTAGTGAAACA+GGG 0.562802 2_2:+10030495 None:intergenic
CAGAACCTATGTGGCAATTG+GGG 0.564961 2_2:-10031157 Msa0236960:CDS
GATCCGTCTTCTCAATGGAC+CGG 0.569679 2_2:-10031277 Msa0236960:CDS
TGACAATCAAAAGCTTGACT+TGG 0.573937 2_2:-10025693 Msa0236960:three_prime_UTR
TTATGGATATCCGTTACGTC+CGG 0.574710 2_2:-10030477 Msa0236960:intron
TGTAAAATGCAGAACCTATG+TGG 0.575003 2_2:-10031166 Msa0236960:intron
AAGTTGATAAGGTCCAGTAT+AGG 0.575231 2_2:+10029820 None:intergenic
CTCATCAGGTCGTTGTGGAT+AGG 0.577829 2_2:+10031118 None:intergenic
GTTGAGTGGAGCGAGGAAAG+TGG 0.577852 2_2:+10031302 None:intergenic
ATGCCGTCCTTAGCCCTGCA+GGG 0.582917 2_2:-10029634 Msa0236960:CDS
AACGGATGAACCCACAAAGT+AGG 0.583788 2_2:+10026544 None:intergenic
AATCTATCTTCTAGAATGAG+AGG 0.584529 2_2:+10031338 None:intergenic
GTATAGGCATTACCCGGTGA+AGG 0.585426 2_2:+10029836 None:intergenic
TGAAACAGGGCTAGCATCAG+TGG 0.587083 2_2:+10030508 None:intergenic
TTTGGTGCACTCATGTCTGG+TGG 0.589030 2_2:+10029662 None:intergenic
AGAAGGAACAGACTCCCTGT+TGG 0.589389 2_2:+10026463 None:intergenic
AACTCTGGTGAAGAAGATGA+AGG 0.589670 2_2:+10026509 None:intergenic
AGGTCCAGATGGAGTCTGTA+CGG 0.593840 2_2:+10030159 None:intergenic
GGTCCGGTCCATTGAGAAGA+CGG 0.594240 2_2:+10031274 None:intergenic
TGAGAAACAGGGCCACCAGT+TGG 0.594435 2_2:+10026389 None:intergenic
AAGCCCTGCAGGGCTAAGGA+CGG 0.594591 2_2:+10029631 None:intergenic
TTGCAGCCAGAACTTACTGC+AGG 0.595785 2_2:-10026488 Msa0236960:CDS
ACCTTCTTCACAACAAATTG+GGG 0.596480 2_2:-10030140 Msa0236960:CDS
GTCTTCTCAATGGACCGGAC+CGG 0.597867 2_2:-10031272 Msa0236960:CDS
ATGTGGCAATTGGGGTTAGG+TGG 0.598261 2_2:-10031149 Msa0236960:CDS
ACCGGTTTGAGAATCCGGTC+CGG 0.598442 2_2:+10031258 None:intergenic
TCTGTCAGGGAAGAGGCAGA+TGG 0.599348 2_2:+10026581 None:intergenic
ATTACCCGGTGAAGGTAGCT+GGG 0.599486 2_2:+10029844 None:intergenic
AAGAGTTGATTACCGCGGCA+CGG 0.603398 2_2:+10031021 None:intergenic
AGAAACATTGCTACTTGTCG+TGG 0.603866 2_2:+10026325 None:intergenic
AGAGAGACCAATAAAAGAAG+GGG 0.604083 2_2:-10031579 None:intergenic
CTATCCACAACGACCTGATG+AGG 0.604241 2_2:-10031117 Msa0236960:CDS
TCAACCTCATCAGGTCGTTG+TGG 0.604355 2_2:+10031113 None:intergenic
ACAAATTCCAGCTCCATCGC+CGG 0.606383 2_2:-10030233 Msa0236960:CDS
TCTGCTTGAAGGACCGACTG+AGG 0.609373 2_2:+10029790 None:intergenic
TGTTGTGAAGAAGGTCCAGA+TGG 0.611457 2_2:+10030148 None:intergenic
AGAAGACGGATCAGGTTGAG+TGG 0.611535 2_2:+10031288 None:intergenic
GTACATGTAAAGGTGAAACC+GGG 0.613076 2_2:+10030206 None:intergenic
AAATTGGGGTACTGGTCGCA+AGG 0.614330 2_2:-10030126 Msa0236960:CDS
TGCAACTGGTACATCTGTCA+GGG 0.614727 2_2:+10026568 None:intergenic
CTAGATCTGAATGTGGAACT+GGG 0.614781 2_2:+10026171 None:intergenic
AATGTGGAACTGGGATAACT+GGG 0.616887 2_2:+10026180 None:intergenic
TATGGTATTGTCCCCAACCA+TGG 0.619686 2_2:-10030059 Msa0236960:CDS
GCAAGGCCACCTCTACTACA+TGG 0.623985 2_2:-10030109 Msa0236960:CDS
GGTTTGTGATACCTATAAGA+TGG 0.626246 2_2:+10029683 None:intergenic
GGATGATTGAACCGACACCT+AGG 0.628271 2_2:+10031050 None:intergenic
GACGTAACGGAAGCCCTGCA+GGG 0.628849 2_2:+10029621 None:intergenic
GTGGAAGAGGCGTAAACACA+TGG 0.630245 2_2:+10025897 None:intergenic
ATGGTTGGGGACAATACCAT+AGG 0.634397 2_2:+10030061 None:intergenic
TCATCCTCGTGACCGTGCCG+CGG 0.635356 2_2:-10031033 Msa0236960:intron
ATGGAAAGAACCTGGCACAC+AGG 0.639621 2_2:+10030865 None:intergenic
TGAAGGAACAAGAGTACCAA+CGG 0.641917 2_2:+10026526 None:intergenic
GAGGTTCCGATGAAATGGAA+AGG 0.642762 2_2:+10031357 None:intergenic
AACGAACCATGTAGTAGAGG+TGG 0.645568 2_2:+10030103 None:intergenic
TCCGATGAAATGGAAAGGAA+GGG 0.649914 2_2:+10031362 None:intergenic
AAGTGTGTCTATGTCCGCGT+GGG 0.652362 2_2:-10031477 Msa0236960:five_prime_UTR
CCAAATATCATTATTCAAGG+AGG 0.652623 2_2:-10026233 Msa0236960:three_prime_UTR
ACATTAGCTGGAGAACCAGA+AGG 0.656658 2_2:+10029893 None:intergenic
ATAACCCAGCTACCTTCACC+GGG 0.661218 2_2:-10029848 Msa0236960:CDS
ATTACCGCGGCACGGTCACG+AGG 0.663314 2_2:+10031029 None:intergenic
GGTCCAGTATAGGCATTACC+CGG 0.665325 2_2:+10029830 None:intergenic
GGATCAGGTTGAGTGGAGCG+AGG 0.669957 2_2:+10031295 None:intergenic
ACAAACGAACCATGTAGTAG+AGG 0.670307 2_2:+10030100 None:intergenic
ACGGTTGGATACAATGGGGA+AGG 0.671841 2_2:+10030178 None:intergenic
GAGAACCAGAAGGAAGTACA+GGG 0.676606 2_2:+10029903 None:intergenic
GAGTGCTTGATTGAGAAACA+GGG 0.682043 2_2:+10026378 None:intergenic
GATGAAATGGAAAGGAAGGG+TGG 0.685039 2_2:+10031365 None:intergenic
GGGGAGTATCCTGAACGTGT+TGG 0.686141 2_2:-10030892 Msa0236960:CDS
GTGGATGGACATGTGCACAA+TGG 0.696923 2_2:+10026003 None:intergenic
ACTTACTGCAGGATCCAACA+GGG 0.697938 2_2:-10026477 Msa0236960:CDS
AAAGTGTGTCTATGTCCGCG+TGG 0.698000 2_2:-10031478 Msa0236960:five_prime_UTR
GGTTATCCCATAAAGCTGTG+TGG 0.703062 2_2:+10029865 None:intergenic
TGCACTCACTACGCACAGCG+TGG 0.705043 2_2:-10026665 Msa0236960:CDS
TACATGTAAAGGTGAAACCG+GGG 0.706635 2_2:+10030207 None:intergenic
AAGTGTGCTAGATCTGAATG+TGG 0.713914 2_2:+10026164 None:intergenic
TCATTATTACTCCAAACCAG+AGG 0.716269 2_2:-10029720 Msa0236960:CDS
GGAGTTATTCTAAAGCAAGG+CGG 0.717033 2_2:+10026042 None:intergenic
GCAGATGGACTGTAACTCAG+TGG 0.717626 2_2:+10026596 None:intergenic
ACAATACCATAGGTCCATAG+GGG 0.724835 2_2:+10030071 None:intergenic
ATAATCAGGAGACTGCAATG+AGG 0.735467 2_2:-10025769 Msa0236960:three_prime_UTR
ACATGTAAAGGTGAAACCGG+GGG 0.747756 2_2:+10030208 None:intergenic
CTGTACGGTTGGATACAATG+GGG 0.782914 2_2:+10030174 None:intergenic
TGAGTCTAGTCTAACCCACG+CGG 0.826945 2_2:+10031463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATATATATACATAC+CGG + chr2_2:10026738-10026757 None:intergenic 10.0%
!! TGATAATTATTATAATTAAC+AGG - chr2_2:10026849-10026868 Msa0236960:intron 10.0%
!! GATAATTATTATAATTAACA+GGG - chr2_2:10026850-10026869 Msa0236960:intron 10.0%
!! TAATCATCATAAAATAAAAA+AGG - chr2_2:10028519-10028538 Msa0236960:intron 10.0%
!! AAAAAAAAAACAAGGAAAAA+TGG + chr2_2:10026350-10026369 None:intergenic 15.0%
!!! TTTTCCTTGTTTTTTTTTTT+TGG - chr2_2:10026351-10026370 Msa0236960:CDS 15.0%
!! TATGAGTAGTTTAATTAAAT+TGG + chr2_2:10027786-10027805 None:intergenic 15.0%
!!! TTATTTTTTGTGTTCATTTT+GGG - chr2_2:10027897-10027916 Msa0236960:intron 15.0%
!!! TATACAATATATATGCTTTT+TGG - chr2_2:10028732-10028751 Msa0236960:intron 15.0%
!!! ATACAATATATATGCTTTTT+GGG - chr2_2:10028733-10028752 Msa0236960:intron 15.0%
!!! AAAATTGTAACTAACATTTT+TGG + chr2_2:10029083-10029102 None:intergenic 15.0%
!! AAATATAGAGTTTATTTGAT+AGG - chr2_2:10029119-10029138 Msa0236960:intron 15.0%
!!! AATTTTGTTATAGTATTCTT+CGG - chr2_2:10029534-10029553 Msa0236960:intron 15.0%
!! ATCAATAAATTATCTTTAGT+GGG + chr2_2:10029586-10029605 None:intergenic 15.0%
!! AATCAATAAATTATCTTTAG+TGG + chr2_2:10029587-10029606 None:intergenic 15.0%
!! ACTAAAGATAATTTATTGAT+TGG - chr2_2:10029586-10029605 Msa0236960:intron 15.0%
!! ATATGAAAAAGTAAAGAATA+TGG + chr2_2:10029855-10029874 None:intergenic 15.0%
!! ATAAATATTAAATACAGGTT+GGG + chr2_2:10031386-10031405 None:intergenic 15.0%
!! TATAAATATTAAATACAGGT+TGG + chr2_2:10031387-10031406 None:intergenic 15.0%
!! AACCTGTATTTAATATTTAT+AGG - chr2_2:10031386-10031405 Msa0236960:five_prime_UTR 15.0%
!! ACCTGTATTTAATATTTATA+GGG - chr2_2:10031387-10031406 Msa0236960:five_prime_UTR 15.0%
!!! TTGATTGTGTTTTCTTAATT+TGG - chr2_2:10026225-10026244 Msa0236960:three_prime_UTR 20.0%
!! ACTACCAAAAAAAAAAAACA+AGG + chr2_2:10026358-10026377 None:intergenic 20.0%
!! CATAATAATTTAGTGAAACA+GGG + chr2_2:10026701-10026720 None:intergenic 20.0%
!!! ATGTTCATATTTTGTGAAAA+CGG - chr2_2:10026882-10026901 Msa0236960:intron 20.0%
!! AACAATATAAAAGAAATGCT+TGG + chr2_2:10027199-10027218 None:intergenic 20.0%
!!! TAATAAAATTTCTAGGATAG+TGG - chr2_2:10027850-10027869 Msa0236960:intron 20.0%
!!! AATAAAATTTCTAGGATAGT+GGG - chr2_2:10027851-10027870 Msa0236960:intron 20.0%
!!! GTTATTTTTTGTGTTCATTT+TGG - chr2_2:10027896-10027915 Msa0236960:intron 20.0%
!! TTATGCATAATTTCATCAAA+TGG + chr2_2:10027964-10027983 None:intergenic 20.0%
!!! AGTATTTTAATCATAGAGTT+GGG - chr2_2:10027998-10028017 Msa0236960:intron 20.0%
!!! ATTAATGTATTGATCATGAA+GGG - chr2_2:10028299-10028318 Msa0236960:intron 20.0%
!! AAAAAAACTTCCATGTATAT+GGG + chr2_2:10028447-10028466 None:intergenic 20.0%
!!! ATATACATGGAAGTTTTTTT+GGG - chr2_2:10028447-10028466 Msa0236960:intron 20.0%
!! CAAAACAGAAAATATTTCAA+GGG + chr2_2:10028496-10028515 None:intergenic 20.0%
!! ACAAAACAGAAAATATTTCA+AGG + chr2_2:10028497-10028516 None:intergenic 20.0%
!!! TACAAGAGAGATTTTTAATA+TGG - chr2_2:10028543-10028562 Msa0236960:intron 20.0%
!!! TTATAGCTATATACTCTTTT+AGG - chr2_2:10028589-10028608 Msa0236960:intron 20.0%
!!! TATAGCTATATACTCTTTTA+GGG - chr2_2:10028590-10028609 Msa0236960:intron 20.0%
!!! ATAATATCTTTTAAGGTTGT+CGG + chr2_2:10028682-10028701 None:intergenic 20.0%
!!! ATGGTGTATAATATCTTTTA+AGG + chr2_2:10028689-10028708 None:intergenic 20.0%
!!! TACAATATATATGCTTTTTG+GGG - chr2_2:10028734-10028753 Msa0236960:intron 20.0%
!! TTAAATTGATCTTATGTACA+AGG - chr2_2:10028878-10028897 Msa0236960:intron 20.0%
!! TAAATTGATCTTATGTACAA+GGG - chr2_2:10028879-10028898 Msa0236960:intron 20.0%
!! TTTATACAGTGAAAAATTGT+TGG + chr2_2:10028980-10028999 None:intergenic 20.0%
!!! TTACAATGTTGATTAAACTT+GGG + chr2_2:10029418-10029437 None:intergenic 20.0%
!!! AAACTTTTTAGACTATTCTT+TGG - chr2_2:10029559-10029578 Msa0236960:intron 20.0%
!! TCAATAAATTATCTTTAGTG+GGG + chr2_2:10029585-10029604 None:intergenic 20.0%
!!! AATTTCCATTTATGCTTTTT+TGG - chr2_2:10029787-10029806 Msa0236960:CDS 20.0%
!!! ATGCAATAAGTATGTTATTT+TGG - chr2_2:10029998-10030017 Msa0236960:intron 20.0%
!!! ATTCACATTTCTTAATTTGA+GGG + chr2_2:10030897-10030916 None:intergenic 20.0%
!! GAAGAATTGAGATAAAAAAA+AGG + chr2_2:10030938-10030957 None:intergenic 20.0%
!! ACCCTATAAATATTAAATAC+AGG + chr2_2:10031391-10031410 None:intergenic 20.0%
!!! GTTATATGGTTTGTAATTTT+TGG - chr2_2:10031461-10031480 Msa0236960:five_prime_UTR 20.0%
!!! ATCTGAATGTGTTTTGTTTT+AGG - chr2_2:10026252-10026271 Msa0236960:three_prime_UTR 25.0%
!!! TGTGTTTTGTTTTAGGTTAT+TGG - chr2_2:10026259-10026278 Msa0236960:three_prime_UTR 25.0%
! ACTAAATATTGCGTTCAATT+CGG - chr2_2:10026378-10026397 Msa0236960:CDS 25.0%
!!! AAGCAAATATTCATTTTTCC+AGG - chr2_2:10026411-10026430 Msa0236960:CDS 25.0%
! TTGAAATGCAGTATTATATG+AGG - chr2_2:10026604-10026623 Msa0236960:CDS 25.0%
! CCATAATAATTTAGTGAAAC+AGG + chr2_2:10026702-10026721 None:intergenic 25.0%
! CCTGTTTCACTAAATTATTA+TGG - chr2_2:10026699-10026718 Msa0236960:intron 25.0%
!!! GCGTTTTGTTTTTTTGAATA+TGG - chr2_2:10026800-10026819 Msa0236960:intron 25.0%
! TTATAATTAACAGGGTGAAA+AGG - chr2_2:10026858-10026877 Msa0236960:intron 25.0%
!! TGTTCATATTTTGTGAAAAC+GGG - chr2_2:10026883-10026902 Msa0236960:intron 25.0%
! ATATTTCACAACTGAATAAG+AGG + chr2_2:10027636-10027655 None:intergenic 25.0%
!! AAAAAACTTCTTTTTCTACC+AGG + chr2_2:10027687-10027706 None:intergenic 25.0%
!! CAACAAATTACAGTAGTTTT+TGG - chr2_2:10027731-10027750 Msa0236960:intron 25.0%
!! TTGGTGATTAAAATAGCTAT+TGG - chr2_2:10027750-10027769 Msa0236960:intron 25.0%
! TTAAACTACTCATACATAGT+TGG - chr2_2:10027792-10027811 Msa0236960:intron 25.0%
!!! GAGTATTTTAATCATAGAGT+TGG - chr2_2:10027997-10028016 Msa0236960:intron 25.0%
! TAGCATTGTCTAAAAACTTA+AGG + chr2_2:10028183-10028202 None:intergenic 25.0%
!! CATTAATGTATTGATCATGA+AGG - chr2_2:10028298-10028317 Msa0236960:intron 25.0%
! CAGATCTAATTATAATATGC+AGG + chr2_2:10028366-10028385 None:intergenic 25.0%
! GAAATACAAAAACTCACTAT+TGG + chr2_2:10028392-10028411 None:intergenic 25.0%
! CAAAAAAACTTCCATGTATA+TGG + chr2_2:10028448-10028467 None:intergenic 25.0%
!!! CATATACATGGAAGTTTTTT+TGG - chr2_2:10028446-10028465 Msa0236960:intron 25.0%
!! ATAGCTATATACTCTTTTAG+GGG - chr2_2:10028591-10028610 Msa0236960:intron 25.0%
!!! TAATATCTTTTAAGGTTGTC+GGG + chr2_2:10028681-10028700 None:intergenic 25.0%
!!! ACAATATATATGCTTTTTGG+GGG - chr2_2:10028735-10028754 Msa0236960:intron 25.0%
! AACCTAACAAGCTATTTATT+AGG + chr2_2:10028905-10028924 None:intergenic 25.0%
! AGTTTATTTGATAGGCTTAT+TGG - chr2_2:10029127-10029146 Msa0236960:intron 25.0%
!! CTTACAATGTTGATTAAACT+TGG + chr2_2:10029419-10029438 None:intergenic 25.0%
!!! TGTAAAAGCATAGGTATTTT+AGG - chr2_2:10029476-10029495 Msa0236960:intron 25.0%
! AGCATAAATGGAAATTATGT+TGG + chr2_2:10029783-10029802 None:intergenic 25.0%
!! ATAGACCAAAAAAGCATAAA+TGG + chr2_2:10029795-10029814 None:intergenic 25.0%
!! TCTATCACATAATGTCATTT+AGG - chr2_2:10029958-10029977 Msa0236960:intron 25.0%
!! CAAACCTAATCTAAAATTAC+AGG + chr2_2:10030185-10030204 None:intergenic 25.0%
!!! TCTTTTTAAAAGACACACTT+AGG - chr2_2:10030404-10030423 Msa0236960:intron 25.0%
! AAAGCAGTAGAATAATAGTT+TGG + chr2_2:10030461-10030480 None:intergenic 25.0%
!! TTCACATTTCTTAATTTGAG+GGG + chr2_2:10030896-10030915 None:intergenic 25.0%
!! CATTCACATTTCTTAATTTG+AGG + chr2_2:10030898-10030917 None:intergenic 25.0%
! CAACCAAATATCATTATTCA+AGG - chr2_2:10030957-10030976 Msa0236960:intron 25.0%
! TTTATTCAAGATCAAAGGAA+TGG + chr2_2:10031094-10031113 None:intergenic 25.0%
!!! CATGTTTTATTCAAGATCAA+AGG + chr2_2:10031099-10031118 None:intergenic 25.0%
! CTTTGATCTTGAATAAAACA+TGG - chr2_2:10031097-10031116 Msa0236960:CDS 25.0%
! ATTGCTACCTAATTCAAAAA+GGG + chr2_2:10031327-10031346 None:intergenic 25.0%
! AATTGCTACCTAATTCAAAA+AGG + chr2_2:10031328-10031347 None:intergenic 25.0%
! TTTACTGTTGAGAAATAATC+AGG - chr2_2:10031410-10031429 Msa0236960:five_prime_UTR 25.0%
! CTTCACATTGTTATGTTATA+TGG - chr2_2:10031447-10031466 Msa0236960:five_prime_UTR 25.0%
! CTTGGTATTTGAACTTATTA+CGG - chr2_2:10031518-10031537 Msa0236960:five_prime_UTR 25.0%
!! AATCTATCTTCTAGAATGAG+AGG + chr2_2:10025858-10025877 None:intergenic 30.0%
GAAGATAGATTACTCTTCAA+TGG - chr2_2:10025867-10025886 Msa0236960:three_prime_UTR 30.0%
TGTTTGTTTACCTTCTAAAC+CGG + chr2_2:10025956-10025975 None:intergenic 30.0%
!!! TATTTGAGAACTGGTTTTTG+TGG - chr2_2:10026113-10026132 Msa0236960:three_prime_UTR 30.0%
!!! CAAACACATACTACTTTTTC+AGG + chr2_2:10026506-10026525 None:intergenic 30.0%
CTGAAAAAGTAGTATGTGTT+TGG - chr2_2:10026504-10026523 Msa0236960:CDS 30.0%
! TCTTCATAGTATGTGCATTT+TGG - chr2_2:10026554-10026573 Msa0236960:CDS 30.0%
! AATATGGAAATGTTTTCGTC+TGG - chr2_2:10026816-10026835 Msa0236960:intron 30.0%
! GTTCATATTTTGTGAAAACG+GGG - chr2_2:10026884-10026903 Msa0236960:intron 30.0%
TAATGATACTCTGGTTGATT+AGG + chr2_2:10027459-10027478 None:intergenic 30.0%
TTGGAGTAATAATGATACTC+TGG + chr2_2:10027468-10027487 None:intergenic 30.0%
AGTTGTGAAATATATCTCCA+CGG - chr2_2:10027643-10027662 Msa0236960:intron 30.0%
!! ACTACTGTAATTTGTTGAAG+AGG + chr2_2:10027728-10027747 None:intergenic 30.0%
AATTATGCATAAATGCCCAT+TGG - chr2_2:10027972-10027991 Msa0236960:intron 30.0%
ATTATGCATAAATGCCCATT+GGG - chr2_2:10027973-10027992 Msa0236960:intron 30.0%
ATACACTATGATTGTACTCT+GGG - chr2_2:10028054-10028073 Msa0236960:intron 30.0%
TTTCGTCTGCATAATTACTA+GGG - chr2_2:10028269-10028288 Msa0236960:intron 30.0%
ATACTTCTTTCCCATATACA+TGG - chr2_2:10028434-10028453 Msa0236960:intron 30.0%
CCATACAAATATGATCAGTA+TGG + chr2_2:10028708-10028727 None:intergenic 30.0%
CCATACTGATCATATTTGTA+TGG - chr2_2:10028705-10028724 Msa0236960:intron 30.0%
TGAGCTAGTTAATATCTCAA+TGG - chr2_2:10028803-10028822 Msa0236960:intron 30.0%
GAGCTAGTTAATATCTCAAT+GGG - chr2_2:10028804-10028823 Msa0236960:intron 30.0%
AACTTGAATTGAGCATGAAT+GGG + chr2_2:10028859-10028878 None:intergenic 30.0%
AAACTTGAATTGAGCATGAA+TGG + chr2_2:10028860-10028879 None:intergenic 30.0%
!! AAATAGCTTGTTAGGTTCAT+AGG - chr2_2:10028908-10028927 Msa0236960:intron 30.0%
TGCCTACAATAGTTTCATAA+TGG - chr2_2:10029009-10029028 Msa0236960:intron 30.0%
GCCTACAATAGTTTCATAAT+GGG - chr2_2:10029010-10029029 Msa0236960:intron 30.0%
! TTTTGGTGAGTTAAAAAGCT+AGG + chr2_2:10029066-10029085 None:intergenic 30.0%
!!! ACTCAAGTGACATTTTTTCA+AGG + chr2_2:10029169-10029188 None:intergenic 30.0%
CACTTGAGTTTGAATTTGAT+TGG - chr2_2:10029180-10029199 Msa0236960:intron 30.0%
CATATATATTCTCAACGCTT+GGG - chr2_2:10029205-10029224 Msa0236960:intron 30.0%
!! AGAGTGATTAGGTTTTATGA+TGG - chr2_2:10029351-10029370 Msa0236960:intron 30.0%
TTCTTCCAATTTCATCTGTA+TGG + chr2_2:10029377-10029396 None:intergenic 30.0%
AGATCCAATTCTTAAGAACT+TGG - chr2_2:10029675-10029694 Msa0236960:CDS 30.0%
TCAACCAAGTTCTTAAGAAT+TGG + chr2_2:10029682-10029701 None:intergenic 30.0%
ATAAGAGTTTAGATCAAGTG+CGG + chr2_2:10029753-10029772 None:intergenic 30.0%
AAGTAAAGAGAATGCAAAAC+TGG + chr2_2:10029915-10029934 None:intergenic 30.0%
!!! GTATGTTATTTTGGTTTGTG+CGG - chr2_2:10030007-10030026 Msa0236960:intron 30.0%
! CCTAATCTAAAATTACAGGA+AGG + chr2_2:10030181-10030200 None:intergenic 30.0%
! CCTTCCTGTAATTTTAGATT+AGG - chr2_2:10030178-10030197 Msa0236960:CDS 30.0%
TTCCATATTATAGACCAGAT+TGG - chr2_2:10030214-10030233 Msa0236960:CDS 30.0%
TTCATCCATTAGTGTTTAGT+TGG - chr2_2:10030330-10030349 Msa0236960:intron 30.0%
AAAGTCCAACTAAACACTAA+TGG + chr2_2:10030338-10030357 None:intergenic 30.0%
ATTAGTGTTTAGTTGGACTT+TGG - chr2_2:10030337-10030356 Msa0236960:intron 30.0%
!! TCCAATGTTTTTGTTTGATC+AGG - chr2_2:10030494-10030513 Msa0236960:CDS 30.0%
!! CCAATGTTTTTGTTTGATCA+GGG - chr2_2:10030495-10030514 Msa0236960:CDS 30.0%
CCTCCTTGAATAATGATATT+TGG + chr2_2:10030963-10030982 None:intergenic 30.0%
CCAAATATCATTATTCAAGG+AGG - chr2_2:10030960-10030979 Msa0236960:intron 30.0%
!! TTAGGAGTTATTCTAAAGCA+AGG + chr2_2:10031157-10031176 None:intergenic 30.0%
AATGGAATTGCAGATTCTTT+AGG + chr2_2:10031175-10031194 None:intergenic 30.0%
GTTCTCATATGAAAGAAGAT+TGG + chr2_2:10031254-10031273 None:intergenic 30.0%
! GCAATTTTCCATTTCTGTTT+TGG - chr2_2:10031342-10031361 Msa0236960:five_prime_UTR 30.0%
TGTAAAATGCAGAACCTATG+TGG - chr2_2:10026027-10026046 Msa0236960:three_prime_UTR 35.0%
TGCACTTACTATTTGAGAAC+TGG - chr2_2:10026104-10026123 Msa0236960:three_prime_UTR 35.0%
! AATGAAAGAGTTGATTACCG+CGG + chr2_2:10026180-10026199 None:intergenic 35.0%
AAGGAAAAATGGAAAGAACC+TGG + chr2_2:10026339-10026358 None:intergenic 35.0%
CATGAGTTATTCAATGAACC+TGG + chr2_2:10026432-10026451 None:intergenic 35.0%
AGGACAAGATCTTGCAAATT+TGG - chr2_2:10026624-10026643 Msa0236960:CDS 35.0%
TATATACATACCGGACGTAA+CGG + chr2_2:10026729-10026748 None:intergenic 35.0%
GACCTTCTTCACAACAAATT+GGG - chr2_2:10027052-10027071 Msa0236960:intron 35.0%
ACCTTCTTCACAACAAATTG+GGG - chr2_2:10027053-10027072 Msa0236960:intron 35.0%
!! AAGTTGATAAGGTCCAGTAT+AGG + chr2_2:10027376-10027395 None:intergenic 35.0%
TCATTATTACTCCAAACCAG+AGG - chr2_2:10027473-10027492 Msa0236960:intron 35.0%
! TTCCTTTTGCTCCATCTTAT+AGG - chr2_2:10027499-10027518 Msa0236960:intron 35.0%
TACCTATAAGATGGAGCAAA+AGG + chr2_2:10027504-10027523 None:intergenic 35.0%
GGTTTGTGATACCTATAAGA+TGG + chr2_2:10027513-10027532 None:intergenic 35.0%
AGTTGAGAGGAAATCATTAC+CGG + chr2_2:10027597-10027616 None:intergenic 35.0%
! TTTTTCTACCAGGTGAAAGA+GGG + chr2_2:10027677-10027696 None:intergenic 35.0%
GATTAAAATAGCTATTGGCG+AGG - chr2_2:10027755-10027774 Msa0236960:intron 35.0%
GATTAAAATACTCGCCCAAT+GGG + chr2_2:10027990-10028009 None:intergenic 35.0%
TGATTAAAATACTCGCCCAA+TGG + chr2_2:10027991-10028010 None:intergenic 35.0%
GATACACTATGATTGTACTC+TGG - chr2_2:10028053-10028072 Msa0236960:intron 35.0%
TACACTATGATTGTACTCTG+GGG - chr2_2:10028055-10028074 Msa0236960:intron 35.0%
CACACTGAAAGATGTTGAAT+AGG + chr2_2:10028099-10028118 None:intergenic 35.0%
CTATTCAACATCTTTCAGTG+TGG - chr2_2:10028097-10028116 Msa0236960:intron 35.0%
AACACAAAGAATCATGATCG+AGG - chr2_2:10028202-10028221 Msa0236960:intron 35.0%
ACACAAAGAATCATGATCGA+GGG - chr2_2:10028203-10028222 Msa0236960:intron 35.0%
GTTTCGTCTGCATAATTACT+AGG - chr2_2:10028268-10028287 Msa0236960:intron 35.0%
! TCACCTTAAGGAGTACATAT+GGG + chr2_2:10028333-10028352 None:intergenic 35.0%
! ATCACCTTAAGGAGTACATA+TGG + chr2_2:10028334-10028353 None:intergenic 35.0%
GAAGTATATGCATGCTGAAA+AGG + chr2_2:10028421-10028440 None:intergenic 35.0%
!! ATACTCTTTTAGGGGTATGA+TGG - chr2_2:10028599-10028618 Msa0236960:intron 35.0%
ATGGTCCTTAAAATGATACC+AGG - chr2_2:10028618-10028637 Msa0236960:intron 35.0%
TGGTCCTTAAAATGATACCA+GGG - chr2_2:10028619-10028638 Msa0236960:intron 35.0%
! CTTTCCCTGGTATCATTTTA+AGG + chr2_2:10028626-10028645 None:intergenic 35.0%
ATAATCCTCAGAATTACCAG+TGG - chr2_2:10028771-10028790 Msa0236960:intron 35.0%
!! GGCCTAATAAATAGCTTGTT+AGG - chr2_2:10028900-10028919 Msa0236960:intron 35.0%
GCCCATTATGAAACTATTGT+AGG + chr2_2:10029014-10029033 None:intergenic 35.0%
GCATATATATTCTCAACGCT+TGG - chr2_2:10029204-10029223 Msa0236960:intron 35.0%
GCAAAACTAACTCTTGGTAT+GGG + chr2_2:10029250-10029269 None:intergenic 35.0%
TGCAAAACTAACTCTTGGTA+TGG + chr2_2:10029251-10029270 None:intergenic 35.0%
ATCTATGAGTACCAACTGAA+AGG + chr2_2:10029300-10029319 None:intergenic 35.0%
CAACATTGTAAGAAGTCTTG+AGG - chr2_2:10029427-10029446 Msa0236960:intron 35.0%
ATTGTAAGAAGTCTTGAGGA+CGG - chr2_2:10029431-10029450 Msa0236960:intron 35.0%
!! CTTTGCTGTTGTTTAAGAGT+TGG - chr2_2:10029646-10029665 Msa0236960:CDS 35.0%
TAGATCAAGTGCGGAAAATA+GGG + chr2_2:10029744-10029763 None:intergenic 35.0%
TTAGATCAAGTGCGGAAAAT+AGG + chr2_2:10029745-10029764 None:intergenic 35.0%
! CTCTCTTAAACTCGTGATTT+TGG - chr2_2:10029816-10029835 Msa0236960:CDS 35.0%
AGAATGCAAAACTGGAAAAG+CGG + chr2_2:10029907-10029926 None:intergenic 35.0%
CATAGGATTCAGCGATAAAA+CGG + chr2_2:10030123-10030142 None:intergenic 35.0%
!!! CTAGTTATGGCCAAGTTTTT+TGG - chr2_2:10030151-10030170 Msa0236960:CDS 35.0%
CTCCAATCTGGTCTATAATA+TGG + chr2_2:10030219-10030238 None:intergenic 35.0%
! CTTCCTGATTCTTTTGAATG+TGG - chr2_2:10030241-10030260 Msa0236960:CDS 35.0%
! TTTAGTTGGACTTTGGTTCA+AGG - chr2_2:10030344-10030363 Msa0236960:intron 35.0%
CCCTGATCAAACAAAAACAT+TGG + chr2_2:10030498-10030517 None:intergenic 35.0%
! ACTGATGACGATATTCTAGA+AGG + chr2_2:10030750-10030769 None:intergenic 35.0%
!!! GTCGTCAAATAGGGTTTTTT+TGG - chr2_2:10030982-10031001 Msa0236960:intron 35.0%
TAGGACTTCCAAAACAGAAA+TGG + chr2_2:10031353-10031372 None:intergenic 35.0%
TGACAATCAAAAGCTTGACT+TGG - chr2_2:10031500-10031519 Msa0236960:five_prime_UTR 35.0%
!! AGAGAAAGTGAGGTGTTGTT+GGG + chr2_2:10025790-10025809 None:intergenic 40.0%
ACCCTTCCTTTCCATTTCAT+CGG - chr2_2:10025830-10025849 Msa0236960:three_prime_UTR 40.0%
TCCGATGAAATGGAAAGGAA+GGG + chr2_2:10025834-10025853 None:intergenic 40.0%
TTCCGATGAAATGGAAAGGA+AGG + chr2_2:10025835-10025854 None:intergenic 40.0%
AATGAGAGGTTCCGATGAAA+TGG + chr2_2:10025844-10025863 None:intergenic 40.0%
!! TCTAAACCGGTTTGAGAATC+CGG + chr2_2:10025943-10025962 None:intergenic 40.0%
! GATTCTCAAACCGGTTTAGA+AGG - chr2_2:10025943-10025962 Msa0236960:three_prime_UTR 40.0%
TAAGTGCAATCAACCTCATC+AGG + chr2_2:10026092-10026111 None:intergenic 40.0%
!!! AGAACTGGTTTTTGTGGCTT+TGG - chr2_2:10026119-10026138 Msa0236960:three_prime_UTR 40.0%
TATCATCATCCGAAACAGAC+AGG - chr2_2:10026660-10026679 Msa0236960:CDS 40.0%
TTATGGATATCCGTTACGTC+CGG - chr2_2:10026716-10026735 Msa0236960:intron 40.0%
ATTTGTACACTAGCAGGAAC+TGG + chr2_2:10026946-10026965 None:intergenic 40.0%
TACATGTAAAGGTGAAACCG+GGG + chr2_2:10026989-10027008 None:intergenic 40.0%
GTACATGTAAAGGTGAAACC+GGG + chr2_2:10026990-10027009 None:intergenic 40.0%
GGTACATGTAAAGGTGAAAC+CGG + chr2_2:10026991-10027010 None:intergenic 40.0%
!! GAAGGTACTGGTACATGTAA+AGG + chr2_2:10027000-10027019 None:intergenic 40.0%
TCTGTACGGTTGGATACAAT+GGG + chr2_2:10027023-10027042 None:intergenic 40.0%
GGACCTTCTTCACAACAAAT+TGG - chr2_2:10027051-10027070 Msa0236960:intron 40.0%
!! ACCCCAATTTGTTGTGAAGA+AGG + chr2_2:10027057-10027076 None:intergenic 40.0%
TTCACAACAAATTGGGGTAC+TGG - chr2_2:10027059-10027078 Msa0236960:intron 40.0%
ACAAACGAACCATGTAGTAG+AGG + chr2_2:10027096-10027115 None:intergenic 40.0%
ACAATACCATAGGTCCATAG+GGG + chr2_2:10027125-10027144 None:intergenic 40.0%
GACAATACCATAGGTCCATA+GGG + chr2_2:10027126-10027145 None:intergenic 40.0%
AGAAAAAGGAACCATGGTTG+GGG + chr2_2:10027148-10027167 None:intergenic 40.0%
CAGAAAAAGGAACCATGGTT+GGG + chr2_2:10027149-10027168 None:intergenic 40.0%
CTGTTAATCGTTGAGCTCTT+TGG - chr2_2:10027248-10027267 Msa0236960:intron 40.0%
ACTGGACCTTATCAACTTTC+TGG - chr2_2:10027378-10027397 Msa0236960:intron 40.0%
!! GAGGAACCAGAAAGTTGATA+AGG + chr2_2:10027387-10027406 None:intergenic 40.0%
TCGTTCTGATTTCTGCTTGA+AGG + chr2_2:10027417-10027436 None:intergenic 40.0%
GAAATCATTACCGGACGTAA+CGG + chr2_2:10027588-10027607 None:intergenic 40.0%
CAGAGTACAAAGAAGTTGAG+AGG + chr2_2:10027610-10027629 None:intergenic 40.0%
CTCTCAACTTCTTTGTACTC+TGG - chr2_2:10027608-10027627 Msa0236960:intron 40.0%
! CTTTTTCTACCAGGTGAAAG+AGG + chr2_2:10027678-10027697 None:intergenic 40.0%
TTCCCCATATGTACTCCTTA+AGG - chr2_2:10028327-10028346 Msa0236960:intron 40.0%
! CACCTTAAGGAGTACATATG+GGG + chr2_2:10028332-10028351 None:intergenic 40.0%
GGACACAAGAAATCACCTTA+AGG + chr2_2:10028345-10028364 None:intergenic 40.0%
ATAGCTATACACTCTTTCCC+TGG + chr2_2:10028639-10028658 None:intergenic 40.0%
TAGCTCAATTTGAATGCCAC+TGG + chr2_2:10028790-10028809 None:intergenic 40.0%
!! CAATAGTTTCATAATGGGCC+CGG - chr2_2:10029015-10029034 Msa0236960:intron 40.0%
TCGCATGCAAAACTAACTCT+TGG + chr2_2:10029256-10029275 None:intergenic 40.0%
!! TAGTTTTGCATGCGACTTAG+TGG - chr2_2:10029261-10029280 Msa0236960:intron 40.0%
ATGCGACTTAGTGGTTGTTT+GGG - chr2_2:10029270-10029289 Msa0236960:intron 40.0%
ATAGATGTTCATGCCCCATA+AGG - chr2_2:10029314-10029333 Msa0236960:intron 40.0%
GATGGCCATACAGATGAAAT+TGG - chr2_2:10029369-10029388 Msa0236960:intron 40.0%
TTGTAAGAAGTCTTGAGGAC+GGG - chr2_2:10029432-10029451 Msa0236960:intron 40.0%
! GGCAGTACTTGTAAAAGCAT+AGG - chr2_2:10029467-10029486 Msa0236960:intron 40.0%
CATAACTAGCATGGGAACAT+AGG + chr2_2:10030140-10030159 None:intergenic 40.0%
CTATGTTCCCATGCTAGTTA+TGG - chr2_2:10030138-10030157 Msa0236960:CDS 40.0%
AACTTGGCCATAACTAGCAT+GGG + chr2_2:10030148-10030167 None:intergenic 40.0%
AAACTTGGCCATAACTAGCA+TGG + chr2_2:10030149-10030168 None:intergenic 40.0%
GGAAGGACATCCAAAAAACT+TGG + chr2_2:10030164-10030183 None:intergenic 40.0%
CCACCACATTCAAAAGAATC+AGG + chr2_2:10030247-10030266 None:intergenic 40.0%
! CCTGATTCTTTTGAATGTGG+TGG - chr2_2:10030244-10030263 Msa0236960:CDS 40.0%
GGATGATCAAATTTGCATGC+AGG + chr2_2:10030570-10030589 None:intergenic 40.0%
!! TGAAGGAACAAGAGTACCAA+CGG + chr2_2:10030670-10030689 None:intergenic 40.0%
AACTCTGGTGAAGAAGATGA+AGG + chr2_2:10030687-10030706 None:intergenic 40.0%
TCATCAGTAAGCACATCAAC+TGG - chr2_2:10030762-10030781 Msa0236960:intron 40.0%
GAGTGCTTGATTGAGAAACA+GGG + chr2_2:10030818-10030837 None:intergenic 40.0%
! ATTGCTACTTGTCGTGGTAT+TGG + chr2_2:10030865-10030884 None:intergenic 40.0%
! AGAAACATTGCTACTTGTCG+TGG + chr2_2:10030871-10030890 None:intergenic 40.0%
ATTCAAGGAGGTCGTCAAAT+AGG - chr2_2:10030972-10030991 Msa0236960:intron 40.0%
TTCAAGGAGGTCGTCAAATA+GGG - chr2_2:10030973-10030992 Msa0236960:intron 40.0%
AATGTGGAACTGGGATAACT+GGG + chr2_2:10031016-10031035 None:intergenic 40.0%
CTAGATCTGAATGTGGAACT+GGG + chr2_2:10031025-10031044 None:intergenic 40.0%
AAGTGTGCTAGATCTGAATG+TGG + chr2_2:10031032-10031051 None:intergenic 40.0%
! ATGGGTTGCTAAAGTTCTCA+TGG + chr2_2:10031127-10031146 None:intergenic 40.0%
!! GGAGTTATTCTAAAGCAAGG+CGG + chr2_2:10031154-10031173 None:intergenic 40.0%
CCAAATATTGGAGATGTGGA+TGG + chr2_2:10031208-10031227 None:intergenic 40.0%
CCATCCACATCTCCAATATT+TGG - chr2_2:10031205-10031224 Msa0236960:intron 40.0%
GACTCCAAATATTGGAGATG+TGG + chr2_2:10031212-10031231 None:intergenic 40.0%
GCACAACAGACTCCAAATAT+TGG + chr2_2:10031220-10031239 None:intergenic 40.0%
ACACATGGTCAATGAAAGTC+TGG + chr2_2:10031284-10031303 None:intergenic 40.0%
TAATTCAAAAAGGGCTCAGG+TGG + chr2_2:10031318-10031337 None:intergenic 40.0%
! ACCTGAGCCCTTTTTGAATT+AGG - chr2_2:10031317-10031336 Msa0236960:exon 40.0%
ACCTAATTCAAAAAGGGCTC+AGG + chr2_2:10031321-10031340 None:intergenic 40.0%
!! CAGGTTGGGAAGTATTGAAT+AGG + chr2_2:10031372-10031391 None:intergenic 40.0%
ATAATCAGGAGACTGCAATG+AGG - chr2_2:10031424-10031443 Msa0236960:five_prime_UTR 40.0%
!! GAGAGAAAGTGAGGTGTTGT+TGG + chr2_2:10025791-10025810 None:intergenic 45.0%
AGAGAGAGAGAGAGAAAGTG+AGG + chr2_2:10025800-10025819 None:intergenic 45.0%
AAATGGAAAGGAAGGGTGGT+TGG + chr2_2:10025827-10025846 None:intergenic 45.0%
GATGAAATGGAAAGGAAGGG+TGG + chr2_2:10025831-10025850 None:intergenic 45.0%
GAGGTTCCGATGAAATGGAA+AGG + chr2_2:10025839-10025858 None:intergenic 45.0%
AACCTGATCCGTCTTCTCAA+TGG - chr2_2:10025911-10025930 Msa0236960:three_prime_UTR 45.0%
TGCAGAACCTATGTGGCAAT+TGG - chr2_2:10026034-10026053 Msa0236960:three_prime_UTR 45.0%
GCAGAACCTATGTGGCAATT+GGG - chr2_2:10026035-10026054 Msa0236960:three_prime_UTR 45.0%
CAGAACCTATGTGGCAATTG+GGG - chr2_2:10026036-10026055 Msa0236960:three_prime_UTR 45.0%
!!! GTTTTTGTGGCTTTGGTCCT+AGG - chr2_2:10026126-10026145 Msa0236960:three_prime_UTR 45.0%
AGGTTATTGGAGCTGCTTCT+AGG - chr2_2:10026272-10026291 Msa0236960:three_prime_UTR 45.0%
AAAACGGGGCAATGCAAGTT+TGG - chr2_2:10026898-10026917 Msa0236960:intron 45.0%
GCTGGAATTTGTACACTAGC+AGG + chr2_2:10026952-10026971 None:intergenic 45.0%
ACATGTAAAGGTGAAACCGG+GGG + chr2_2:10026988-10027007 None:intergenic 45.0%
CTGTACGGTTGGATACAATG+GGG + chr2_2:10027022-10027041 None:intergenic 45.0%
GTCTGTACGGTTGGATACAA+TGG + chr2_2:10027024-10027043 None:intergenic 45.0%
TGTTGTGAAGAAGGTCCAGA+TGG + chr2_2:10027048-10027067 None:intergenic 45.0%
AACGAACCATGTAGTAGAGG+TGG + chr2_2:10027093-10027112 None:intergenic 45.0%
GGACAATACCATAGGTCCAT+AGG + chr2_2:10027127-10027146 None:intergenic 45.0%
ATGGTTGGGGACAATACCAT+AGG + chr2_2:10027135-10027154 None:intergenic 45.0%
TATGGTATTGTCCCCAACCA+TGG - chr2_2:10027134-10027153 Msa0236960:intron 45.0%
CCAGAAAAAGGAACCATGGT+TGG + chr2_2:10027150-10027169 None:intergenic 45.0%
! CCAACCATGGTTCCTTTTTC+TGG - chr2_2:10027147-10027166 Msa0236960:intron 45.0%
!!! CATGGTTCCTTTTTCTGGCT+GGG - chr2_2:10027152-10027171 Msa0236960:intron 45.0%
!!! ATGGTTCCTTTTTCTGGCTG+GGG - chr2_2:10027153-10027172 Msa0236960:intron 45.0%
! TTGGCTTGACCTACCTGATA+AGG + chr2_2:10027180-10027199 None:intergenic 45.0%
! ATCGTTGAGCTCTTTGGTTC+AGG - chr2_2:10027254-10027273 Msa0236960:intron 45.0%
! GAGAACCAGAAGGAAGTACA+GGG + chr2_2:10027293-10027312 None:intergenic 45.0%
ACATTAGCTGGAGAACCAGA+AGG + chr2_2:10027303-10027322 None:intergenic 45.0%
!! TCTGGTTCTCCAGCTAATGT+TGG - chr2_2:10027303-10027322 Msa0236960:intron 45.0%
! TTGGCTCCACACAGCTTTAT+GGG - chr2_2:10027322-10027341 Msa0236960:intron 45.0%
GGTTATCCCATAAAGCTGTG+TGG + chr2_2:10027331-10027350 None:intergenic 45.0%
!! CAACTTTCTGGTTCCTCAGT+CGG - chr2_2:10027390-10027409 Msa0236960:intron 45.0%
TCTGGTTGATTAGGACTTGC+TGG + chr2_2:10027450-10027469 None:intergenic 45.0%
AAAAGGAAGCTCCTCTGGTT+TGG + chr2_2:10027487-10027506 None:intergenic 45.0%
!! ACTTTTGGTGCACTCATGTC+TGG + chr2_2:10027537-10027556 None:intergenic 45.0%
! CTAAGGACGGCATTCACTTT+TGG + chr2_2:10027552-10027571 None:intergenic 45.0%
TTCATCTTCCCTCTTTCACC+TGG - chr2_2:10027666-10027685 Msa0236960:intron 45.0%
ATATGTTCTCTGCCAGAGCA+GGG - chr2_2:10028120-10028139 Msa0236960:intron 45.0%
GAATGCCACTGGTAATTCTG+AGG + chr2_2:10028779-10028798 None:intergenic 45.0%
GATAGGCTTATTGGACTGAG+TGG - chr2_2:10029136-10029155 Msa0236960:intron 45.0%
CATGCGACTTAGTGGTTGTT+TGG - chr2_2:10029269-10029288 Msa0236960:intron 45.0%
TGCGACTTAGTGGTTGTTTG+GGG - chr2_2:10029271-10029290 Msa0236960:intron 45.0%
! GTTTGGGGTAACCTTTCAGT+TGG - chr2_2:10029286-10029305 Msa0236960:intron 45.0%
ATGTTCATGCCCCATAAGGT+AGG - chr2_2:10029318-10029337 Msa0236960:intron 45.0%
TGTTCATGCCCCATAAGGTA+GGG - chr2_2:10029319-10029338 Msa0236960:intron 45.0%
!! TGTTGCTGACTCAATGCAGT+GGG - chr2_2:10029615-10029634 Msa0236960:intron 45.0%
CCAGGGGAGATGCATATTTA+GGG + chr2_2:10029718-10029737 None:intergenic 45.0%
CAGCGATAAAACGGATGACA+GGG + chr2_2:10030114-10030133 None:intergenic 45.0%
TCAGCGATAAAACGGATGAC+AGG + chr2_2:10030115-10030134 None:intergenic 45.0%
!! AATCAGGAAGCACTCCAATC+TGG + chr2_2:10030231-10030250 None:intergenic 45.0%
AGACAGCAATAACAGCTGAG+TGG + chr2_2:10030307-10030326 None:intergenic 45.0%
CAGCGTGGTATATGCAAGTT+TGG - chr2_2:10030543-10030562 Msa0236960:CDS 45.0%
CTGTAACTCAGTGGTGCAAT+AGG + chr2_2:10030591-10030610 None:intergenic 45.0%
TGCAACTGGTACATCTGTCA+GGG + chr2_2:10030628-10030647 None:intergenic 45.0%
ACGGATGAACCCACAAAGTA+GGG + chr2_2:10030651-10030670 None:intergenic 45.0%
AACGGATGAACCCACAAAGT+AGG + chr2_2:10030652-10030671 None:intergenic 45.0%
TACTTTGTGGGTTCATCCGT+TGG - chr2_2:10030651-10030670 Msa0236960:intron 45.0%
TTGGATCCTGCAGTAAGTTC+TGG + chr2_2:10030714-10030733 None:intergenic 45.0%
AACTTACTGCAGGATCCAAC+AGG - chr2_2:10030715-10030734 Msa0236960:intron 45.0%
ACTTACTGCAGGATCCAACA+GGG - chr2_2:10030716-10030735 Msa0236960:intron 45.0%
AGCACATCAACTGGATCAGT+TGG - chr2_2:10030771-10030790 Msa0236960:intron 45.0%
CGAGTGCTTGATTGAGAAAC+AGG + chr2_2:10030819-10030838 None:intergenic 45.0%
GAATGTGGAACTGGGATAAC+TGG + chr2_2:10031017-10031036 None:intergenic 45.0%
GCTAGATCTGAATGTGGAAC+TGG + chr2_2:10031026-10031045 None:intergenic 45.0%
!! ATTATTATAATAAAATTTCT+AGG - chr2_2:10027843-10027862 Msa0236960:intron 5.0%
AAAGTGTGTCTATGTCCGCG+TGG - chr2_2:10025715-10025734 Msa0236960:three_prime_UTR 50.0%
AAGTGTGTCTATGTCCGCGT+GGG - chr2_2:10025716-10025735 Msa0236960:three_prime_UTR 50.0%
TGAGTCTAGTCTAACCCACG+CGG + chr2_2:10025733-10025752 None:intergenic 50.0%
!! AGAAGACGGATCAGGTTGAG+TGG + chr2_2:10025908-10025927 None:intergenic 50.0%
GTCCATTGAGAAGACGGATC+AGG + chr2_2:10025916-10025935 None:intergenic 50.0%
GATCCGTCTTCTCAATGGAC+CGG - chr2_2:10025916-10025935 Msa0236960:three_prime_UTR 50.0%
CCTAACCCCAATTGCCACAT+AGG + chr2_2:10026044-10026063 None:intergenic 50.0%
CCTATGTGGCAATTGGGGTT+AGG - chr2_2:10026041-10026060 Msa0236960:three_prime_UTR 50.0%
ATGTGGCAATTGGGGTTAGG+TGG - chr2_2:10026044-10026063 Msa0236960:three_prime_UTR 50.0%
CTCATCAGGTCGTTGTGGAT+AGG + chr2_2:10026078-10026097 None:intergenic 50.0%
CTATCCACAACGACCTGATG+AGG - chr2_2:10026076-10026095 Msa0236960:three_prime_UTR 50.0%
TCAACCTCATCAGGTCGTTG+TGG + chr2_2:10026083-10026102 None:intergenic 50.0%
GGATGATTGAACCGACACCT+AGG + chr2_2:10026146-10026165 None:intergenic 50.0%
! AAGAGTTGATTACCGCGGCA+CGG + chr2_2:10026175-10026194 None:intergenic 50.0%
!! GAGCTGCTTCTAGGACTGTT+GGG - chr2_2:10026281-10026300 Msa0236960:three_prime_UTR 50.0%
!! AGCTGCTTCTAGGACTGTTG+GGG - chr2_2:10026282-10026301 Msa0236960:three_prime_UTR 50.0%
ATGGAAAGAACCTGGCACAC+AGG + chr2_2:10026331-10026350 None:intergenic 50.0%
TCAGTGGCTCCTGTCTGTTT+CGG + chr2_2:10026672-10026691 None:intergenic 50.0%
! TGAAACAGGGCTAGCATCAG+TGG + chr2_2:10026688-10026707 None:intergenic 50.0%
ACAAATTCCAGCTCCATCGC+CGG - chr2_2:10026960-10026979 Msa0236960:intron 50.0%
! GGATACAATGGGGAAGGTAC+TGG + chr2_2:10027012-10027031 None:intergenic 50.0%
ACGGTTGGATACAATGGGGA+AGG + chr2_2:10027018-10027037 None:intergenic 50.0%
AGGTCCAGATGGAGTCTGTA+CGG + chr2_2:10027037-10027056 None:intergenic 50.0%
!! AAATTGGGGTACTGGTCGCA+AGG - chr2_2:10027067-10027086 Msa0236960:intron 50.0%
CCAGCCAGAAAAAGGAACCA+TGG + chr2_2:10027154-10027173 None:intergenic 50.0%
!! CCATGGTTCCTTTTTCTGGC+TGG - chr2_2:10027151-10027170 Msa0236960:intron 50.0%
TAAGGACCCCAGCCAGAAAA+AGG + chr2_2:10027162-10027181 None:intergenic 50.0%
ACAAGCCCTGTACTTCCTTC+TGG - chr2_2:10027285-10027304 Msa0236960:intron 50.0%
! GGAGAACCAGAAGGAAGTAC+AGG + chr2_2:10027294-10027313 None:intergenic 50.0%
TGTGTGGAGCCAACATTAGC+TGG + chr2_2:10027315-10027334 None:intergenic 50.0%
! GTTGGCTCCACACAGCTTTA+TGG - chr2_2:10027321-10027340 Msa0236960:intron 50.0%
GATAACCCAGCTACCTTCAC+CGG - chr2_2:10027344-10027363 Msa0236960:intron 50.0%
ATAACCCAGCTACCTTCACC+GGG - chr2_2:10027345-10027364 Msa0236960:intron 50.0%
ATTACCCGGTGAAGGTAGCT+GGG + chr2_2:10027352-10027371 None:intergenic 50.0%
GTATAGGCATTACCCGGTGA+AGG + chr2_2:10027360-10027379 None:intergenic 50.0%
TCACCGGGTAATGCCTATAC+TGG - chr2_2:10027360-10027379 Msa0236960:intron 50.0%
GGTCCAGTATAGGCATTACC+CGG + chr2_2:10027366-10027385 None:intergenic 50.0%
! TTTGGTGCACTCATGTCTGG+TGG + chr2_2:10027534-10027553 None:intergenic 50.0%
GAAAGAGGGAAGATGAACCG+TGG + chr2_2:10027663-10027682 None:intergenic 50.0%
AGCACGAGCTCTATGAACAG+TGG + chr2_2:10027820-10027839 None:intergenic 50.0%
CTGGGGAAGTTCTGTCTGTA+AGG - chr2_2:10028072-10028091 Msa0236960:intron 50.0%
GATATGTTCTCTGCCAGAGC+AGG - chr2_2:10028119-10028138 Msa0236960:intron 50.0%
GTACACACTATTCCCTGCTC+TGG + chr2_2:10028135-10028154 None:intergenic 50.0%
ACCTGATATAGCTCCCACCA+TGG + chr2_2:10029041-10029060 None:intergenic 50.0%
TCAACGCTTGGGTTTGAGCT+TGG - chr2_2:10029216-10029235 Msa0236960:intron 50.0%
!! TACCGACTCCCTACCTTATG+GGG + chr2_2:10029330-10029349 None:intergenic 50.0%
!! CTACCGACTCCCTACCTTAT+GGG + chr2_2:10029331-10029350 None:intergenic 50.0%
!! TCTACCGACTCCCTACCTTA+TGG + chr2_2:10029332-10029351 None:intergenic 50.0%
GGAGTCGGTAGAGAGTGATT+AGG - chr2_2:10029340-10029359 Msa0236960:intron 50.0%
GAGGACGGGTGTAACATTTC+AGG - chr2_2:10029446-10029465 Msa0236960:intron 50.0%
GCATTGAGTCAGCAACACAG+TGG + chr2_2:10029612-10029631 None:intergenic 50.0%
!! GTGTTGCTGACTCAATGCAG+TGG - chr2_2:10029614-10029633 Msa0236960:intron 50.0%
!! GTTGCTGACTCAATGCAGTG+GGG - chr2_2:10029616-10029635 Msa0236960:intron 50.0%
CCCTAAATATGCATCTCCCC+TGG - chr2_2:10029715-10029734 Msa0236960:CDS 50.0%
GCCAGGGGAGATGCATATTT+AGG + chr2_2:10029719-10029738 None:intergenic 50.0%
TGCGGAAAATAGGGATGCCA+GGG + chr2_2:10029735-10029754 None:intergenic 50.0%
!! GCAGATGGACTGTAACTCAG+TGG + chr2_2:10030600-10030619 None:intergenic 50.0%
GTGCAACTGGTACATCTGTC+AGG + chr2_2:10030629-10030648 None:intergenic 50.0%
ACCAGTTGCACCCTACTTTG+TGG - chr2_2:10030638-10030657 Msa0236960:intron 50.0%
CCAGTTGCACCCTACTTTGT+GGG - chr2_2:10030639-10030658 Msa0236960:intron 50.0%
! GTAAGTTCTGGCTGCAACTC+TGG + chr2_2:10030702-10030721 None:intergenic 50.0%
TTGCAGCCAGAACTTACTGC+AGG - chr2_2:10030705-10030724 Msa0236960:intron 50.0%
AGAAGGAACAGACTCCCTGT+TGG + chr2_2:10030733-10030752 None:intergenic 50.0%
!! GTTGGCTTGACTTTGCCAAC+TGG - chr2_2:10030789-10030808 Msa0236960:intron 50.0%
!! GTGGTATTGGCAGGTGCTAA+AGG + chr2_2:10030852-10030871 None:intergenic 50.0%
!! CTACTTGTCGTGGTATTGGC+AGG + chr2_2:10030861-10030880 None:intergenic 50.0%
CTAAAGCAAGGCGGCTGTAT+GGG + chr2_2:10031145-10031164 None:intergenic 50.0%
! TCTAAAGCAAGGCGGCTGTA+TGG + chr2_2:10031146-10031165 None:intergenic 50.0%
GTGGATGGACATGTGCACAA+TGG + chr2_2:10031193-10031212 None:intergenic 50.0%
! GTGGAAGAGGCGTAAACACA+TGG + chr2_2:10031299-10031318 None:intergenic 50.0%
AAAAAGGGCTCAGGTGGAAG+AGG + chr2_2:10031312-10031331 None:intergenic 50.0%
GTTGAGTGGAGCGAGGAAAG+TGG + chr2_2:10025894-10025913 None:intergenic 55.0%
GGTCCGGTCCATTGAGAAGA+CGG + chr2_2:10025922-10025941 None:intergenic 55.0%
GTCTTCTCAATGGACCGGAC+CGG - chr2_2:10025921-10025940 Msa0236960:three_prime_UTR 55.0%
ACCGGACCGGATTCTCAAAC+CGG - chr2_2:10025934-10025953 Msa0236960:three_prime_UTR 55.0%
!! ACCGGTTTGAGAATCCGGTC+CGG + chr2_2:10025938-10025957 None:intergenic 55.0%
!! GTGGCTTTGGTCCTAGGTGT+CGG - chr2_2:10026132-10026151 Msa0236960:three_prime_UTR 55.0%
!! GGAGCTGCTTCTAGGACTGT+TGG - chr2_2:10026280-10026299 Msa0236960:three_prime_UTR 55.0%
!! GGGGAGTATCCTGAACGTGT+TGG - chr2_2:10026301-10026320 Msa0236960:exon 55.0%
ACAGGCTGTCCAACACGTTC+AGG + chr2_2:10026313-10026332 None:intergenic 55.0%
AAAGGTGAAACCGGGGGAAC+CGG + chr2_2:10026982-10027001 None:intergenic 55.0%
CCAGATGGAGTCTGTACGGT+TGG + chr2_2:10027033-10027052 None:intergenic 55.0%
CCAACCGTACAGACTCCATC+TGG - chr2_2:10027030-10027049 Msa0236960:intron 55.0%
GCAAGGCCACCTCTACTACA+TGG - chr2_2:10027084-10027103 Msa0236960:intron 55.0%
TCGTTTGTCCAGAGCCCCTA+TGG - chr2_2:10027108-10027127 Msa0236960:intron 55.0%
! TTCTGGCTGGGGTCCTTATC+AGG - chr2_2:10027164-10027183 Msa0236960:intron 55.0%
CATTACCCGGTGAAGGTAGC+TGG + chr2_2:10027353-10027372 None:intergenic 55.0%
TCTGCTTGAAGGACCGACTG+AGG + chr2_2:10027406-10027425 None:intergenic 55.0%
GGAGCAAAAGGAAGCTCCTC+TGG + chr2_2:10027492-10027511 None:intergenic 55.0%
!! TTTCATAATGGGCCCGGCCA+TGG - chr2_2:10029021-10029040 Msa0236960:intron 55.0%
ATATAGCTCCCACCATGGCC+GGG + chr2_2:10029036-10029055 None:intergenic 55.0%
GATATAGCTCCCACCATGGC+CGG + chr2_2:10029037-10029056 None:intergenic 55.0%
! GCCATGGTGGGAGCTATATC+AGG - chr2_2:10029037-10029056 Msa0236960:intron 55.0%
TGCCCCATAAGGTAGGGAGT+CGG - chr2_2:10029325-10029344 Msa0236960:intron 55.0%
CTGACTCAATGCAGTGGGGA+TGG - chr2_2:10029620-10029639 Msa0236960:CDS 55.0%
GCGGAAAATAGGGATGCCAG+GGG + chr2_2:10029734-10029753 None:intergenic 55.0%
GTGCGGAAAATAGGGATGCC+AGG + chr2_2:10029736-10029755 None:intergenic 55.0%
CCCACAAAGTAGGGTGCAAC+TGG + chr2_2:10030642-10030661 None:intergenic 55.0%
GGCTTGACTTTGCCAACTGG+TGG - chr2_2:10030792-10030811 Msa0236960:intron 55.0%
TGAGAAACAGGGCCACCAGT+TGG + chr2_2:10030807-10030826 None:intergenic 55.0%
!! GGATCAGGTTGAGTGGAGCG+AGG + chr2_2:10025901-10025920 None:intergenic 60.0%
TGTTGGACAGCCTGTGTGCC+AGG - chr2_2:10026318-10026337 Msa0236960:CDS 60.0%
CCATAGGTCCATAGGGGCTC+TGG + chr2_2:10027119-10027138 None:intergenic 60.0%
CCAGAGCCCCTATGGACCTA+TGG - chr2_2:10027116-10027135 Msa0236960:intron 60.0%
GGCTGGGGTCCTTATCAGGT+AGG - chr2_2:10027168-10027187 Msa0236960:intron 60.0%
AATGCCGTCCTTAGCCCTGC+AGG - chr2_2:10027558-10027577 Msa0236960:intron 60.0%
ATGCCGTCCTTAGCCCTGCA+GGG - chr2_2:10027559-10027578 Msa0236960:intron 60.0%
AAGCCCTGCAGGGCTAAGGA+CGG + chr2_2:10027565-10027584 None:intergenic 60.0%
! GACGTAACGGAAGCCCTGCA+GGG + chr2_2:10027575-10027594 None:intergenic 60.0%
TGCAGGGCTTCCGTTACGTC+CGG - chr2_2:10027575-10027594 Msa0236960:intron 60.0%
!! ATAATGGGCCCGGCCATGGT+GGG - chr2_2:10029025-10029044 Msa0236960:intron 60.0%
TGCACTCACTACGCACAGCG+TGG - chr2_2:10030528-10030547 Msa0236960:CDS 60.0%
TCATCCTCGTGACCGTGCCG+CGG - chr2_2:10026160-10026179 Msa0236960:three_prime_UTR 65.0%
ATTACCGCGGCACGGTCACG+AGG + chr2_2:10026167-10026186 None:intergenic 65.0%
ACGGAAGCCCTGCAGGGCTA+AGG + chr2_2:10027569-10027588 None:intergenic 65.0%
! GGACGTAACGGAAGCCCTGC+AGG + chr2_2:10027576-10027595 None:intergenic 65.0%
!! CATAATGGGCCCGGCCATGG+TGG - chr2_2:10029024-10029043 Msa0236960:intron 65.0%
!! AGCTCCATCGCCGGTTCCCC+CGG - chr2_2:10026969-10026988 Msa0236960:intron 70.0%
GAAACCGGGGGAACCGGCGA+TGG + chr2_2:10026976-10026995 None:intergenic 70.0%
GGGGGAACCGGCGATGGAGC+TGG + chr2_2:10026970-10026989 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 10025623 10031592 10025623 ID=Msa0236960;Name=Msa0236960
chr2_2 mRNA 10025623 10031592 10025623 ID=Msa0236960-mRNA-1;Parent=Msa0236960;Name=Msa0236960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=263|1|1|1|1|1|7|687|478
chr2_2 exon 10025623 10026699 10025623 ID=Msa0236960-mRNA-1:exon:4336;Parent=Msa0236960-mRNA-1
chr2_2 exon 10029619 10029939 10029619 ID=Msa0236960-mRNA-1:exon:4335;Parent=Msa0236960-mRNA-1
chr2_2 exon 10030030 10030344 10030030 ID=Msa0236960-mRNA-1:exon:4334;Parent=Msa0236960-mRNA-1
chr2_2 exon 10030478 10030600 10030478 ID=Msa0236960-mRNA-1:exon:4333;Parent=Msa0236960-mRNA-1
chr2_2 exon 10030876 10030941 10030876 ID=Msa0236960-mRNA-1:exon:4332;Parent=Msa0236960-mRNA-1
chr2_2 exon 10031034 10031176 10031034 ID=Msa0236960-mRNA-1:exon:4331;Parent=Msa0236960-mRNA-1
chr2_2 exon 10031251 10031592 10031251 ID=Msa0236960-mRNA-1:exon:4330;Parent=Msa0236960-mRNA-1
chr2_2 five_prime_UTR 10031330 10031592 10031330 ID=Msa0236960-mRNA-1:five_prime_utr;Parent=Msa0236960-mRNA-1
chr2_2 CDS 10031251 10031329 10031251 ID=Msa0236960-mRNA-1:cds;Parent=Msa0236960-mRNA-1
chr2_2 CDS 10031034 10031176 10031034 ID=Msa0236960-mRNA-1:cds;Parent=Msa0236960-mRNA-1
chr2_2 CDS 10030876 10030941 10030876 ID=Msa0236960-mRNA-1:cds;Parent=Msa0236960-mRNA-1
chr2_2 CDS 10030478 10030600 10030478 ID=Msa0236960-mRNA-1:cds;Parent=Msa0236960-mRNA-1
chr2_2 CDS 10030030 10030344 10030030 ID=Msa0236960-mRNA-1:cds;Parent=Msa0236960-mRNA-1
chr2_2 CDS 10029619 10029939 10029619 ID=Msa0236960-mRNA-1:cds;Parent=Msa0236960-mRNA-1
chr2_2 CDS 10026310 10026699 10026310 ID=Msa0236960-mRNA-1:cds;Parent=Msa0236960-mRNA-1
chr2_2 three_prime_UTR 10025623 10026309 10025623 ID=Msa0236960-mRNA-1:three_prime_utr;Parent=Msa0236960-mRNA-1
Gene Sequence

>Msa0236960

ATGGACCACTTTCCTCGCTCCACTCAACCTGATCCGTCTTCTCAATGGACCGGACCGGATTCTCAAACCGGTTTAGAAGAACCTATGTGGCAATTGGGGTTAGGTGGTGAAGATTCCTATCCACAACGACCTGATGAGGTTGATTGCACTTACTATTTGAGAACTGGTTTTTGTGGCTTTGGTCCTAGGTGTCGGTTCAATCATCCTCGTGACCGTGCCGCGGTTATTGGAGCTGCTTCTAGGACTGTTGGGGAGTATCCTGAACGTGTTGGACAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCATCTTGTAAGTATCATCATCCGAAACAGACAGGAGCCACTGATGCTAGCCCTGTTTCACTAAATTATTATGGATATCCGTTACGTCCGGGTGAAAAGGAATGTTCATATTTTGTGAAAACGGGGCAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCAGTTCCTGCTAGTGTACAAATTCCAGCTCCATCGCCGGTTCCCCCGGTTTCACCTTTACATGTACCAGTACCTTCCCCATTGTATCCAACCGTACAGACTCCATCTGGACCTTCTTCACAACAAATTGGGGTACTGGTCGCAAGGCCACCTCTACTACATGGTTCGTTTGTCCAGAGCCCCTATGGACCTATGGTATTGTCCCCAACCATGGTTCCTTTTTCTGGCTGGGGTCCTTATCAGGCTACTGCAACAAGCCCTGTACTTCCTTCTGGTTCTCCAGCTAATGTTGGCTCCACACAGCTTTATGGGATAACCCAGCTACCTTCACCGGGTAATGCCTATACTGGACCTTATCAACTTTCTGGTTCCTCAGTCGGTCCTTCAAGCAGAAATCAGAACGAGCAATCATTTCCAGCAAGTCCTAATCAACCAGAGTATCATTATTACTCCAAACCAGAGGAGCTTCCTTTTGCTCCATCTTATAGGTATCACAAACCACCAGACATGAGTGCACCAAAAGTGAATGCCGTCCTTAGCCCTGCAGGGCTTCCGTTACGTCCGGGAGCAGCACTCTGCACTCACTACGCACAGCGTGGTATATGCAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATTGCACCACTGAGTTACAGTCCATCTGCCTCTTCCCTGACAGATGTACCAGTTGCACCCTACTTTGTGGGTTCATCCGTTGGTACTCTTGTTCCTTCATCTTCTTCACCAGAGTTGCAGCCAGAACTTACTGCAGGATCCAACAGGGAGTCTGTTCCTTCTAGAATATCGTCATCAGTAAGCACATCAACTGGATCAGTTGGCTTGACTTTGCCAACTGGTGGCCCTGTTTCTCAATCAAGCACTCGAAGTTCTAGTCCTTTAGCACCTGCCAATACCACGACAAGTAGCAATGTTTCTCACCCCTCAAATTAA
Protein sequence

>Msa0236960

MDHFPRSTQPDPSSQWTGPDSQTGLEEPMWQLGLGGEDSYPQRPDEVDCTYYLRTGFCGFGPRCRFNHPRDRAAVIGAASRTVGEYPERVGQPVCQYYMRTRSCKFGASCKYHHPKQTGATDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPASVQIPAPSPVPPVSPLHVPVPSPLYPTVQTPSGPSSQQIGVLVARPPLLHGSFVQSPYGPMVLSPTMVPFSGWGPYQATATSPVLPSGSPANVGSTQLYGITQLPSPGNAYTGPYQLSGSSVGPSSRNQNEQSFPASPNQPEYHYYSKPEELPFAPSYRYHKPPDMSAPKVNAVLSPAGLPLRPGAALCTHYAQRGICKFGPACKFDHPIAPLSYSPSASSLTDVPVAPYFVGSSVGTLVPSSSSPELQPELTAGSNRESVPSRISSSVSTSTGSVGLTLPTGGPVSQSSTRSSSPLAPANTTTSSNVSHPSN*