AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0194950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194950 MtrunA17_Chr2g0286151 98.548 482 3 1 1 478 1 482 0.0 944
Msa0194950 MtrunA17_Chr4g0066941 67.012 482 119 6 11 460 18 491 0.0 543
Msa0194950 MtrunA17_Chr1g0195891 49.862 363 148 10 1 349 1 343 8.21e-98 298
Msa0194950 MtrunA17_Chr7g0249221 42.079 404 195 11 26 413 8 388 2.97e-93 289
Msa0194950 MtrunA17_Chr7g0249221 29.193 161 57 3 12 115 190 350 3.46e-12 68.2
Msa0194950 MtrunA17_Chr5g0438891 38.012 342 173 13 40 379 36 340 1.71e-60 203
Msa0194950 MtrunA17_Chr5g0438891 44.578 83 45 1 38 120 76 157 2.87e-18 86.7
Msa0194950 MtrunA17_Chr5g0438891 40.964 83 47 1 33 115 255 335 3.55e-13 71.2
Msa0194950 MtrunA17_Chr3g0116431 33.978 362 167 9 35 375 166 476 1.06e-54 191
Msa0194950 MtrunA17_Chr4g0058011 33.994 353 181 11 36 378 227 537 1.05e-52 186
Msa0194950 MtrunA17_Chr8g0356241 29.268 369 195 14 40 374 138 474 8.62e-30 122
Msa0194950 MtrunA17_Chr8g0356241 35.429 175 70 4 38 181 188 350 6.65e-28 116
Msa0194950 MtrunA17_Chr8g0356241 32.018 228 98 4 3 173 258 485 3.06e-27 114
Msa0194950 MtrunA17_Chr8g0356241 28.877 374 159 18 86 401 138 462 2.32e-16 81.6
Msa0194950 MtrunA17_Chr1g0195901 57.143 77 30 2 378 454 1 74 1.32e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0194950 AT5G18550.1 51.277 470 199 13 11 469 15 465 4.25e-137 403
Msa0194950 AT5G18550.4 53.258 445 178 13 11 444 15 440 1.70e-136 401
Msa0194950 AT3G06410.1 56.391 399 154 8 8 395 12 401 3.02e-132 390
Msa0194950 AT5G18550.3 51.936 439 185 12 38 469 14 433 3.47e-131 387
Msa0194950 AT2G47850.1 50.805 435 196 10 15 449 18 434 5.29e-131 388
Msa0194950 AT2G47850.3 50.805 435 196 10 15 449 18 434 5.29e-131 388
Msa0194950 AT5G18550.2 49.574 470 194 13 11 469 15 452 2.06e-129 383
Msa0194950 AT2G47850.2 46.437 435 189 11 15 449 18 408 5.69e-108 328
Msa0194950 AT3G02830.1 41.406 384 167 10 26 390 18 362 4.40e-87 273
Msa0194950 AT3G02830.2 41.732 381 164 10 29 390 1 342 9.05e-87 271
Msa0194950 AT5G16540.1 41.081 370 148 11 26 386 19 327 8.60e-82 258
Msa0194950 AT5G16540.1 38.144 97 60 0 22 118 222 318 3.34e-15 77.4
Msa0194950 AT5G16540.3 41.417 367 145 11 29 386 1 306 1.31e-81 257
Msa0194950 AT5G16540.3 38.144 97 60 0 22 118 201 297 3.15e-15 77.4
Msa0194950 AT2G47850.4 46.988 332 149 8 124 449 2 312 2.12e-76 243
Msa0194950 AT2G47850.4 41.304 92 54 0 37 128 161 252 1.58e-16 81.3
Msa0194950 AT5G16540.2 39.459 370 147 12 26 386 19 320 1.27e-74 239
Msa0194950 AT5G16540.2 41.237 97 49 1 86 182 240 328 5.44e-15 77.0
Msa0194950 AT5G16540.2 35.294 102 49 2 22 118 222 311 9.36e-14 73.2
Msa0194950 AT5G16540.4 40.303 330 127 11 29 349 1 269 8.15e-65 211
Msa0194950 AT5G63260.1 34.715 386 188 13 20 390 85 421 3.52e-58 198
Msa0194950 AT5G63260.2 33.250 400 191 13 20 390 85 437 2.77e-55 191
Msa0194950 AT3G48440.1 35.632 348 187 11 37 377 104 421 5.65e-54 187
Msa0194950 AT1G04990.1 32.884 371 187 9 21 387 34 346 1.17e-52 183
Msa0194950 AT1G04990.6 32.884 371 187 9 21 387 34 346 1.17e-52 183
Msa0194950 AT1G04990.2 32.884 371 187 9 21 387 34 346 1.17e-52 183
Msa0194950 AT1G04990.5 31.536 371 172 10 21 387 34 326 4.04e-47 167
Msa0194950 AT2G32930.2 31.316 380 206 10 40 411 41 373 4.89e-45 164
Msa0194950 AT2G32930.2 43.038 79 44 1 37 115 82 159 2.41e-15 78.6
Msa0194950 AT2G32930.3 31.316 380 206 10 40 411 14 346 7.06e-45 162
Msa0194950 AT2G32930.3 43.038 79 44 1 37 115 55 132 2.25e-15 78.6
Msa0194950 AT3G12680.1 32.410 361 186 13 40 374 171 499 2.09e-41 155
Msa0194950 AT3G12680.1 42.000 150 59 3 38 162 220 366 4.43e-32 129
Msa0194950 AT3G12680.1 40.476 168 58 5 41 167 338 504 2.61e-29 121
Msa0194950 AT3G12680.1 32.353 204 79 5 37 181 262 465 1.99e-24 106
Msa0194950 AT3G12680.1 41.000 100 45 2 39 124 416 515 2.39e-18 88.2
Msa0194950 AT2G32930.1 31.053 380 203 11 40 411 41 369 1.10e-40 152
Msa0194950 AT1G04990.3 30.405 296 156 7 96 387 16 265 3.77e-31 122
Msa0194950 AT1G04990.3 39.437 71 42 1 46 116 12 81 1.01e-13 72.4
Msa0194950 AT1G04990.3 43.421 76 42 1 88 163 179 253 7.76e-13 69.7
Msa0194950 AT1G04990.4 28.716 296 141 8 96 387 16 245 7.95e-26 107
Msa0194950 AT1G04990.4 42.424 66 37 1 51 116 17 81 1.31e-13 72.0
Msa0194950 AT1G48195.1 46.753 77 40 1 85 161 5 80 3.43e-17 76.6
Msa0194950 AT1G48195.1 42.308 78 45 0 296 373 3 80 2.92e-16 74.3
Msa0194950 AT1G48195.1 35.897 78 50 0 37 114 3 80 2.22e-11 60.5

Find 223 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCTCCACACAGCTTTA+TGG 0.148543 2_1:+11534850 Msa0194950:CDS
ACTGGACCTTATCAACTTTC+TGG 0.159692 2_1:+11534907 Msa0194950:CDS
CCTCCTTGAATAATGATATT+TGG 0.185540 2_1:-11538489 None:intergenic
CTTCACATTGTTATGTTATA+TGG 0.187358 2_1:+11538976 Msa0194950:three_prime_UTR
GGACCTTCTTCACAACAAAT+TGG 0.188676 2_1:+11534580 Msa0194950:CDS
AGGACAAGATCTTGCAAATT+TGG 0.216539 2_1:+11534151 Msa0194950:CDS
CCATCCACATCTCCAATATT+TGG 0.224277 2_1:+11538734 Msa0194950:three_prime_UTR
AATTGCTACCTAATTCAAAA+AGG 0.241903 2_1:-11538854 None:intergenic
ATTCAAGGAGGTCGTCAAAT+AGG 0.248236 2_1:+11538501 Msa0194950:three_prime_UTR
TTCTGGCTGGGGTCCTTATC+AGG 0.252628 2_1:+11534693 Msa0194950:CDS
CTAAGGACGGCATTCACTTT+TGG 0.274159 2_1:-11535078 None:intergenic
AATGGAATTGCAGATTCTTT+AGG 0.278667 2_1:-11538701 None:intergenic
CGAGTGCTTGATTGAGAAAC+AGG 0.284724 2_1:-11538345 None:intergenic
ACCTGTATTTAATATTTATA+GGG 0.285284 2_1:+11538916 Msa0194950:three_prime_UTR
CCATAATAATTTAGTGAAAC+AGG 0.285617 2_1:-11534226 None:intergenic
CTTGGTATTTGAACTTATTA+CGG 0.304251 2_1:+11539047 Msa0194950:three_prime_UTR
AACCTGTATTTAATATTTAT+AGG 0.308915 2_1:+11538915 Msa0194950:three_prime_UTR
GAATGTGGAACTGGGATAAC+TGG 0.314145 2_1:-11538543 None:intergenic
ACAAGCCCTGTACTTCCTTC+TGG 0.315539 2_1:+11534814 Msa0194950:CDS
TTGGCTCCACACAGCTTTAT+GGG 0.316108 2_1:+11534851 Msa0194950:CDS
TAAGGACCCCAGCCAGAAAA+AGG 0.327349 2_1:-11534688 None:intergenic
TCGTTCTGATTTCTGCTTGA+AGG 0.328571 2_1:-11534943 None:intergenic
CCTGTTTCACTAAATTATTA+TGG 0.341570 2_1:+11534226 Msa0194950:CDS
TAATGATACTCTGGTTGATT+AGG 0.346544 2_1:-11534985 None:intergenic
AGGTTATTGGAGCTGCTTCT+AGG 0.346914 2_1:+11533798 Msa0194950:intron
GACCTTCTTCACAACAAATT+GGG 0.350087 2_1:+11534581 Msa0194950:CDS
TGCAGAACCTATGTGGCAAT+TGG 0.353523 2_1:+11533560 Msa0194950:intron
TCTGGTTGATTAGGACTTGC+TGG 0.357396 2_1:-11534976 None:intergenic
GAGCTGCTTCTAGGACTGTT+GGG 0.358371 2_1:+11533807 Msa0194950:CDS
GATTCTCAAACCGGTTTAGA+AGG 0.358762 2_1:+11533467 Msa0194950:CDS
TTCAAGGAGGTCGTCAAATA+GGG 0.365715 2_1:+11538502 Msa0194950:three_prime_UTR
TTTACTGTTGAGAAATAATC+AGG 0.367051 2_1:+11538939 Msa0194950:three_prime_UTR
CAGCGTGGTATATGCAAGTT+TGG 0.367194 2_1:+11538072 Msa0194950:CDS
CCAGTTGCACCCTACTTTGT+GGG 0.372096 2_1:+11538168 Msa0194950:CDS
GAGAGAAAGTGAGGTGTTGT+TGG 0.372177 2_1:-11533316 None:intergenic
GCACAACAGACTCCAAATAT+TGG 0.375865 2_1:-11538746 None:intergenic
GCAGAACCTATGTGGCAATT+GGG 0.384400 2_1:+11533561 Msa0194950:intron
CATTACCCGGTGAAGGTAGC+TGG 0.387837 2_1:-11534879 None:intergenic
ATTGCTACTTGTCGTGGTAT+TGG 0.389271 2_1:-11538391 None:intergenic
AATGAGAGGTTCCGATGAAA+TGG 0.393509 2_1:-11533365 None:intergenic
TGCACTTACTATTTGAGAAC+TGG 0.397141 2_1:+11533630 Msa0194950:CDS
TCTAAACCGGTTTGAGAATC+CGG 0.399891 2_1:-11533464 None:intergenic
ACCAGTTGCACCCTACTTTG+TGG 0.400576 2_1:+11538167 Msa0194950:CDS
AATGCCGTCCTTAGCCCTGC+AGG 0.402972 2_1:+11535087 Msa0194950:CDS
CATTCACATTTCTTAATTTG+AGG 0.403952 2_1:-11538424 None:intergenic
AGCTCCATCGCCGGTTCCCC+CGG 0.406379 2_1:+11534498 Msa0194950:CDS
GTAAGTTCTGGCTGCAACTC+TGG 0.408260 2_1:-11538228 None:intergenic
CCCACAAAGTAGGGTGCAAC+TGG 0.414071 2_1:-11538168 None:intergenic
AGAGAAAGTGAGGTGTTGTT+GGG 0.414360 2_1:-11533315 None:intergenic
GCTAGATCTGAATGTGGAAC+TGG 0.415034 2_1:-11538552 None:intergenic
TCTAAAGCAAGGCGGCTGTA+TGG 0.415167 2_1:-11538672 None:intergenic
TCACCGGGTAATGCCTATAC+TGG 0.417112 2_1:+11534889 Msa0194950:CDS
AACTTACTGCAGGATCCAAC+AGG 0.417918 2_1:+11538244 Msa0194950:CDS
AAAAGGAAGCTCCTCTGGTT+TGG 0.424409 2_1:-11535013 None:intergenic
CCATAGGTCCATAGGGGCTC+TGG 0.431128 2_1:-11534645 None:intergenic
ACCCCAATTTGTTGTGAAGA+AGG 0.431547 2_1:-11534583 None:intergenic
GTGCAACTGGTACATCTGTC+AGG 0.431818 2_1:-11538155 None:intergenic
GTTGGCTTGACTTTGCCAAC+TGG 0.431997 2_1:+11538318 Msa0194950:CDS
TGTTTGTTTACCTTCTAAAC+CGG 0.432767 2_1:-11533477 None:intergenic
TTGGATCCTGCAGTAAGTTC+TGG 0.432849 2_1:-11538240 None:intergenic
TAGGACTTCCAAAACAGAAA+TGG 0.433296 2_1:-11538879 None:intergenic
GGAGCTGCTTCTAGGACTGT+TGG 0.436466 2_1:+11533806 Msa0194950:CDS
AAAACGGGGCAATGCAAGTT+TGG 0.437807 2_1:+11534427 Msa0194950:CDS
GGTACATGTAAAGGTGAAAC+CGG 0.437936 2_1:-11534517 None:intergenic
GGAGCAAAAGGAAGCTCCTC+TGG 0.446002 2_1:-11535018 None:intergenic
CAACCAAATATCATTATTCA+AGG 0.446562 2_1:+11538486 Msa0194950:three_prime_UTR
GAAGATAGATTACTCTTCAA+TGG 0.448038 2_1:+11533391 Msa0194950:exon
CCTATGTGGCAATTGGGGTT+AGG 0.448878 2_1:+11533567 Msa0194950:CDS
TACTTTGTGGGTTCATCCGT+TGG 0.452836 2_1:+11538180 Msa0194950:CDS
GTTCTCATATGAAAGAAGAT+TGG 0.453505 2_1:-11538780 None:intergenic
CTGTAACTCAGTGGTGCAAT+AGG 0.453647 2_1:-11538117 None:intergenic
ACACATGGTCAATGAAAGTC+TGG 0.455737 2_1:-11538810 None:intergenic
ATAAATATTAAATACAGGTT+GGG 0.458655 2_1:-11538912 None:intergenic
TCATCAGTAAGCACATCAAC+TGG 0.458973 2_1:+11538291 Msa0194950:CDS
CAGGTTGGGAAGTATTGAAT+AGG 0.463903 2_1:-11538898 None:intergenic
CAACTTTCTGGTTCCTCAGT+CGG 0.464302 2_1:+11534919 Msa0194950:CDS
GGACGTAACGGAAGCCCTGC+AGG 0.467084 2_1:-11535102 None:intergenic
TTCACAACAAATTGGGGTAC+TGG 0.467303 2_1:+11534588 Msa0194950:CDS
GTGGCTTTGGTTCTAGGTGT+CGG 0.469793 2_1:+11533658 Msa0194950:CDS
ATTTGTACACTAGCAGGAAC+TGG 0.472818 2_1:-11534472 None:intergenic
GGAGAACCAGAAGGAAGTAC+AGG 0.473748 2_1:-11534820 None:intergenic
ACCCTATAAATATTAAATAC+AGG 0.474157 2_1:-11538917 None:intergenic
TCAGTGGCTCCTGTCTGTTT+CGG 0.476235 2_1:-11534196 None:intergenic
TACCTATAAGATGGAGCAAA+AGG 0.476484 2_1:-11535030 None:intergenic
TAAGTGCAATCAACCTCATC+AGG 0.476914 2_1:-11533615 None:intergenic
TTATAATTAACAGGGTGAAA+AGG 0.477063 2_1:+11534387 Msa0194950:intron
CTAAAGCAAGGCGGCTGTAT+GGG 0.477236 2_1:-11538671 None:intergenic
GTGGTATTGGCAGGTGCTAA+AGG 0.477705 2_1:-11538378 None:intergenic
GATCCGTCTTCTCAATGGAC+CGG 0.479108 2_1:+11533440 Msa0194950:CDS
ACTGATGACGATATTCTAGA+AGG 0.479935 2_1:-11538276 None:intergenic
TCGTTTGTCCAGAGCCCCTA+TGG 0.481665 2_1:+11534637 Msa0194950:CDS
GTCTGTACGGTTGGATACAA+TGG 0.485124 2_1:-11534550 None:intergenic
TCTGGTTCTCCAGCTAATGT+TGG 0.486127 2_1:+11534832 Msa0194950:CDS
TCTGTACGGTTGGATACAAT+GGG 0.486783 2_1:-11534549 None:intergenic
ACCCTTCCTTTCCATTTCAT+CGG 0.487503 2_1:+11533354 Msa0194950:five_prime_UTR
ACCGGGCCGGATTCTCAAAC+CGG 0.487708 2_1:+11533458 Msa0194950:CDS
CCAGAGCCCCTATGGACCTA+TGG 0.489000 2_1:+11534645 Msa0194950:CDS
CCTAACCCCAATTGCCACAT+AGG 0.489648 2_1:-11533567 None:intergenic
TATAAATATTAAATACAGGT+TGG 0.489912 2_1:-11538913 None:intergenic
ACAGGCTGTCCAACACGTTC+AGG 0.492536 2_1:-11533836 None:intergenic
TGTGTGGAGCCAACATTAGC+TGG 0.495140 2_1:-11534841 None:intergenic
AACCTGATCCGTCTTCTCAA+TGG 0.496083 2_1:+11533435 Msa0194950:CDS
ACGGAAGCCCTGCAGGGCTA+AGG 0.497525 2_1:-11535095 None:intergenic
CCAACCGTACAGACTCCATC+TGG 0.498384 2_1:+11534559 Msa0194950:CDS
GGACAATACCATAGGTCCAT+AGG 0.499115 2_1:-11534653 None:intergenic
AGAGAGAGACCAATAAAAGA+AGG 0.500751 2_1:+11533134 None:intergenic
GGATACAATGGGGAAGGTAC+TGG 0.505178 2_1:-11534538 None:intergenic
CTTTGATCTTGAATAAAACA+TGG 0.505754 2_1:+11538626 Msa0194950:three_prime_UTR
ATTCACATTTCTTAATTTGA+GGG 0.507428 2_1:-11538423 None:intergenic
CTACTTGTCGTGGTATTGGC+AGG 0.509824 2_1:-11538387 None:intergenic
TGCAGGGCTTCCGTTACGTC+CGG 0.510700 2_1:+11535104 Msa0194950:CDS
GTCCATTGAGAAGACGGATC+AGG 0.511766 2_1:-11533437 None:intergenic
TTGGCTTGACCTACCTGATA+AGG 0.513240 2_1:-11534706 None:intergenic
TTGAAATGCAGTATTATATG+AGG 0.513604 2_1:+11534131 Msa0194950:intron
GACAATACCATAGGTCCATA+GGG 0.514835 2_1:-11534652 None:intergenic
GATAACCCAGCTACCTTCAC+CGG 0.517819 2_1:+11534873 Msa0194950:CDS
GGCTTGACTTTGCCAACTGG+TGG 0.521772 2_1:+11538321 Msa0194950:CDS
TGTTGGACAGCCTGTGTGCC+AGG 0.522566 2_1:+11533844 Msa0194950:CDS
GAAGGTACTGGTACATGTAA+AGG 0.528560 2_1:-11534526 None:intergenic
AAATGGAAAGGAAGGGTGGT+TGG 0.531666 2_1:-11533348 None:intergenic
CCAGATGGAGTCTGTACGGT+TGG 0.533223 2_1:-11534559 None:intergenic
AGCACATCAACTGGATCAGT+TGG 0.533767 2_1:+11538300 Msa0194950:CDS
TTAGGAGTTATTCTAAAGCA+AGG 0.534715 2_1:-11538683 None:intergenic
GAGGAACCAGAAAGTTGATA+AGG 0.535581 2_1:-11534913 None:intergenic
TTTATTCAAGATCAAAGGAA+TGG 0.535890 2_1:-11538620 None:intergenic
TTCCGATGAAATGGAAAGGA+AGG 0.536074 2_1:-11533356 None:intergenic
ATGGGTTGCTAAAGTTCTCA+TGG 0.536241 2_1:-11538653 None:intergenic
ATCCGTCTTCTCAATGGACC+GGG 0.542887 2_1:+11533441 Msa0194950:CDS
CCAAATATTGGAGATGTGGA+TGG 0.543002 2_1:-11538734 None:intergenic
GCTGGAATTTGTACACTAGC+AGG 0.543649 2_1:-11534478 None:intergenic
TTCACATTTCTTAATTTGAG+GGG 0.545538 2_1:-11538422 None:intergenic
TATCATCATCCGAAACAGAC+AGG 0.545794 2_1:+11534187 Msa0194950:CDS
GGATGATCAAATTTGCATGC+AGG 0.545853 2_1:-11538096 None:intergenic
GAAATCATTACCGGACGTAA+CGG 0.546095 2_1:-11535114 None:intergenic
TATATACATACCGGACGTAA+CGG 0.546577 2_1:-11534253 None:intergenic
TGGTACATCTGTCAGGGAAG+AGG 0.547265 2_1:-11538148 None:intergenic
ACGGATGAACCCACAAAGTA+GGG 0.550114 2_1:-11538177 None:intergenic
GACTCCAAATATTGGAGATG+TGG 0.555876 2_1:-11538738 None:intergenic
AGCTGCTTCTAGGACTGTTG+GGG 0.557759 2_1:+11533808 Msa0194950:CDS
GAGAGAGACCAATAAAAGAA+GGG 0.560652 2_1:+11533135 None:intergenic
TTGGAGTAATAATGATACTC+TGG 0.560717 2_1:-11534994 None:intergenic
TTGTAGAGAGAGAGAAAGTG+AGG 0.561854 2_1:-11533325 None:intergenic
CATAATAATTTAGTGAAACA+GGG 0.562802 2_1:-11534225 None:intergenic
CAGAACCTATGTGGCAATTG+GGG 0.564961 2_1:+11533562 Msa0194950:intron
TGACAATCAAAAGCTTGACT+TGG 0.573937 2_1:+11539029 Msa0194950:three_prime_UTR
GGCCCGGTCCATTGAGAAGA+CGG 0.574708 2_1:-11533443 None:intergenic
TTATGGATATCCGTTACGTC+CGG 0.574710 2_1:+11534243 Msa0194950:CDS
TGTAAAATGCAGAACCTATG+TGG 0.575003 2_1:+11533553 Msa0194950:intron
AAGTTGATAAGGTCCAGTAT+AGG 0.575231 2_1:-11534902 None:intergenic
CTCATCAGGTCGTTGTGGAT+AGG 0.577829 2_1:-11533601 None:intergenic
GTTGAGTGGAGCGAGGAAAG+TGG 0.577852 2_1:-11533415 None:intergenic
ATGCCGTCCTTAGCCCTGCA+GGG 0.582917 2_1:+11535088 Msa0194950:CDS
AACGGATGAACCCACAAAGT+AGG 0.583788 2_1:-11538178 None:intergenic
AATCTATCTTCTAGAATGAG+AGG 0.584529 2_1:-11533379 None:intergenic
GTATAGGCATTACCCGGTGA+AGG 0.585426 2_1:-11534886 None:intergenic
TGAAACAGGGCTAGCATCAG+TGG 0.587083 2_1:-11534212 None:intergenic
TTTGGTGCACTCATGTCTGG+TGG 0.589030 2_1:-11535060 None:intergenic
AGAAGGAACAGACTCCCTGT+TGG 0.589389 2_1:-11538259 None:intergenic
AACTCTGGTGAAGAAGATGA+AGG 0.589670 2_1:-11538213 None:intergenic
AGGTCCAGATGGAGTCTGTA+CGG 0.593840 2_1:-11534563 None:intergenic
TGAGAAACAGGGCCACCAGT+TGG 0.594435 2_1:-11538333 None:intergenic
AAGCCCTGCAGGGCTAAGGA+CGG 0.594591 2_1:-11535091 None:intergenic
GTCTTCTCAATGGACCGGGC+CGG 0.595616 2_1:+11533445 Msa0194950:CDS
TTGCAGCCAGAACTTACTGC+AGG 0.595785 2_1:+11538234 Msa0194950:CDS
ACCTTCTTCACAACAAATTG+GGG 0.596480 2_1:+11534582 Msa0194950:CDS
ATGTGGCAATTGGGGTTAGG+TGG 0.598261 2_1:+11533570 Msa0194950:CDS
TCTGTCAGGGAAGAGGCAGA+TGG 0.599348 2_1:-11538141 None:intergenic
ATTACCCGGTGAAGGTAGCT+GGG 0.599486 2_1:-11534878 None:intergenic
AAGAGTTGATTACCGCGGCA+CGG 0.603398 2_1:-11533698 None:intergenic
AGAAACATTGCTACTTGTCG+TGG 0.603866 2_1:-11538397 None:intergenic
AGAGAGACCAATAAAAGAAG+GGG 0.604083 2_1:+11533136 None:intergenic
CTATCCACAACGACCTGATG+AGG 0.604241 2_1:+11533602 Msa0194950:CDS
TCAACCTCATCAGGTCGTTG+TGG 0.604355 2_1:-11533606 None:intergenic
ACAAATTCCAGCTCCATCGC+CGG 0.606383 2_1:+11534489 Msa0194950:CDS
TCTGCTTGAAGGACCGACTG+AGG 0.609373 2_1:-11534932 None:intergenic
TGTTGTGAAGAAGGTCCAGA+TGG 0.611457 2_1:-11534574 None:intergenic
AGAAGACGGATCAGGTTGAG+TGG 0.611535 2_1:-11533429 None:intergenic
GTACATGTAAAGGTGAAACC+GGG 0.613076 2_1:-11534516 None:intergenic
AAATTGGGGTACTGGTCGCA+AGG 0.614330 2_1:+11534596 Msa0194950:CDS
TGCAACTGGTACATCTGTCA+GGG 0.614727 2_1:-11538154 None:intergenic
CTAGATCTGAATGTGGAACT+GGG 0.614781 2_1:-11538551 None:intergenic
AATGTGGAACTGGGATAACT+GGG 0.616887 2_1:-11538542 None:intergenic
TATGGTATTGTCCCCAACCA+TGG 0.619686 2_1:+11534663 Msa0194950:CDS
GCAAGGCCACCTCTACTACA+TGG 0.623985 2_1:+11534613 Msa0194950:CDS
GGTTTGTGATACCTATAAGA+TGG 0.626246 2_1:-11535039 None:intergenic
GACGTAACGGAAGCCCTGCA+GGG 0.628849 2_1:-11535101 None:intergenic
GTGGAAGAGGCGTAAACACA+TGG 0.630245 2_1:-11538825 None:intergenic
ATGGTTGGGGACAATACCAT+AGG 0.634397 2_1:-11534661 None:intergenic
ACCGGTTTGAGAATCCGGCC+CGG 0.634443 2_1:-11533459 None:intergenic
TCATCCTCGTGACCGTGCCG+CGG 0.635356 2_1:+11533686 Msa0194950:CDS
TGAAGGAACAAGAGTACCAA+CGG 0.641917 2_1:-11538196 None:intergenic
GAGGTTCCGATGAAATGGAA+AGG 0.642762 2_1:-11533360 None:intergenic
AACGAACCATGTAGTAGAGG+TGG 0.645568 2_1:-11534619 None:intergenic
TCCGATGAAATGGAAAGGAA+GGG 0.649914 2_1:-11533355 None:intergenic
AAGTGTGTCTATGTCCGCGT+GGG 0.652362 2_1:+11533244 Msa0194950:five_prime_UTR
CCAAATATCATTATTCAAGG+AGG 0.652623 2_1:+11538489 Msa0194950:three_prime_UTR
ACATTAGCTGGAGAACCAGA+AGG 0.656658 2_1:-11534829 None:intergenic
ATAGAAAGAACCTGGCACAC+AGG 0.659872 2_1:-11533854 None:intergenic
ATAACCCAGCTACCTTCACC+GGG 0.661218 2_1:+11534874 Msa0194950:CDS
ATTACCGCGGCACGGTCACG+AGG 0.663314 2_1:-11533690 None:intergenic
GGTCCAGTATAGGCATTACC+CGG 0.665325 2_1:-11534892 None:intergenic
GGATCAGGTTGAGTGGAGCG+AGG 0.669957 2_1:-11533422 None:intergenic
ACAAACGAACCATGTAGTAG+AGG 0.670307 2_1:-11534622 None:intergenic
ACGGTTGGATACAATGGGGA+AGG 0.671841 2_1:-11534544 None:intergenic
GAGAACCAGAAGGAAGTACA+GGG 0.676606 2_1:-11534819 None:intergenic
GAGTGCTTGATTGAGAAACA+GGG 0.682043 2_1:-11538344 None:intergenic
GATGAAATGGAAAGGAAGGG+TGG 0.685039 2_1:-11533352 None:intergenic
GGGGAGTATCCTGAACGTGT+TGG 0.686141 2_1:+11533827 Msa0194950:CDS
GTGGATGGACATGTGCACAA+TGG 0.696923 2_1:-11538719 None:intergenic
ACTTACTGCAGGATCCAACA+GGG 0.697938 2_1:+11538245 Msa0194950:CDS
AAAGTGTGTCTATGTCCGCG+TGG 0.698000 2_1:+11533243 Msa0194950:five_prime_UTR
GGTTATCCCATAAAGCTGTG+TGG 0.703062 2_1:-11534857 None:intergenic
TGCACTCACTACGCACAGCG+TGG 0.705043 2_1:+11538057 Msa0194950:CDS
TACATGTAAAGGTGAAACCG+GGG 0.706635 2_1:-11534515 None:intergenic
AAGTGTGCTAGATCTGAATG+TGG 0.713914 2_1:-11538558 None:intergenic
TCATTATTACTCCAAACCAG+AGG 0.716269 2_1:+11535002 Msa0194950:CDS
GGAGTTATTCTAAAGCAAGG+CGG 0.717033 2_1:-11538680 None:intergenic
GCAGATGGACTGTAACTCAG+TGG 0.717626 2_1:-11538126 None:intergenic
ACAATACCATAGGTCCATAG+GGG 0.724835 2_1:-11534651 None:intergenic
ATAATCAGGAGACTGCAATG+AGG 0.735467 2_1:+11538953 Msa0194950:three_prime_UTR
ACATGTAAAGGTGAAACCGG+GGG 0.747756 2_1:-11534514 None:intergenic
CTGTACGGTTGGATACAATG+GGG 0.782914 2_1:-11534548 None:intergenic
TGAGTCTAGTCTAACCCACG+CGG 0.826945 2_1:-11533258 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATATATATACATAC+CGG - chr2_1:11534265-11534284 None:intergenic 10.0%
!! TGATAATTATTATAATTAAC+AGG + chr2_1:11534378-11534397 Msa0194950:intron 10.0%
!! GATAATTATTATAATTAACA+GGG + chr2_1:11534379-11534398 Msa0194950:intron 10.0%
!! TAATCATCATAAAATAAAAA+AGG + chr2_1:11536048-11536067 Msa0194950:intron 10.0%
!!! TTTCCTTGTTTTTTTTTTTT+TGG + chr2_1:11533878-11533897 Msa0194950:intron 15.0%
!! TATGAGTAGTTTAATTAAAT+TGG - chr2_1:11535315-11535334 None:intergenic 15.0%
!!! TTATTTTTTGTGTTCATTTT+GGG + chr2_1:11535426-11535445 Msa0194950:intron 15.0%
!!! TATACAATATATATGCTTTT+TGG + chr2_1:11536261-11536280 Msa0194950:intron 15.0%
!!! ATACAATATATATGCTTTTT+GGG + chr2_1:11536262-11536281 Msa0194950:intron 15.0%
!!! AAAATTGTAACTAACATTTT+TGG - chr2_1:11536612-11536631 None:intergenic 15.0%
!! AAATATAGAGTTTATTTGAT+AGG + chr2_1:11536648-11536667 Msa0194950:intron 15.0%
!!! AATTTTGTTATAGTATTCTT+CGG + chr2_1:11537063-11537082 Msa0194950:intron 15.0%
!! ATCAATAAATTATCTTTAGT+GGG - chr2_1:11537115-11537134 None:intergenic 15.0%
!! AATCAATAAATTATCTTTAG+TGG - chr2_1:11537116-11537135 None:intergenic 15.0%
!! ACTAAAGATAATTTATTGAT+TGG + chr2_1:11537115-11537134 Msa0194950:intron 15.0%
!! ATATGAAAAAGTAAAGAATA+TGG - chr2_1:11537384-11537403 None:intergenic 15.0%
!! ATAAATATTAAATACAGGTT+GGG - chr2_1:11538915-11538934 None:intergenic 15.0%
!! TATAAATATTAAATACAGGT+TGG - chr2_1:11538916-11538935 None:intergenic 15.0%
!! AACCTGTATTTAATATTTAT+AGG + chr2_1:11538915-11538934 Msa0194950:three_prime_UTR 15.0%
!! ACCTGTATTTAATATTTATA+GGG + chr2_1:11538916-11538935 Msa0194950:three_prime_UTR 15.0%
!!! TTGATTGTGTTTTCTTAATT+TGG + chr2_1:11533751-11533770 Msa0194950:intron 20.0%
!! CTACCAAAAAAAAAAAAACA+AGG - chr2_1:11533884-11533903 None:intergenic 20.0%
!! CATAATAATTTAGTGAAACA+GGG - chr2_1:11534228-11534247 None:intergenic 20.0%
!!! ATGTTCATATTTTGTGAAAA+CGG + chr2_1:11534411-11534430 Msa0194950:CDS 20.0%
!! AACAATATAAAAGAAATGCT+TGG - chr2_1:11534728-11534747 None:intergenic 20.0%
!!! TAATAAAATTTCTAGGATAG+TGG + chr2_1:11535379-11535398 Msa0194950:intron 20.0%
!!! AATAAAATTTCTAGGATAGT+GGG + chr2_1:11535380-11535399 Msa0194950:intron 20.0%
!!! GTTATTTTTTGTGTTCATTT+TGG + chr2_1:11535425-11535444 Msa0194950:intron 20.0%
!! TTATGCATAATTTCATCAAA+TGG - chr2_1:11535493-11535512 None:intergenic 20.0%
!!! AGTATTTTAATCATAGAGTT+GGG + chr2_1:11535527-11535546 Msa0194950:intron 20.0%
!!! ATTAATGTATTGATCATGAA+GGG + chr2_1:11535828-11535847 Msa0194950:intron 20.0%
!! AAAAAAACTTCCATGTATAT+GGG - chr2_1:11535976-11535995 None:intergenic 20.0%
!!! ATATACATGGAAGTTTTTTT+GGG + chr2_1:11535976-11535995 Msa0194950:intron 20.0%
!! CAAAACAGAAAATATTTCAA+GGG - chr2_1:11536025-11536044 None:intergenic 20.0%
!! ACAAAACAGAAAATATTTCA+AGG - chr2_1:11536026-11536045 None:intergenic 20.0%
!!! TACAAGAGAGATTTTTAATA+TGG + chr2_1:11536072-11536091 Msa0194950:intron 20.0%
!!! TTATAGCTATATACTCTTTT+AGG + chr2_1:11536118-11536137 Msa0194950:intron 20.0%
!!! TATAGCTATATACTCTTTTA+GGG + chr2_1:11536119-11536138 Msa0194950:intron 20.0%
!!! ATAATATCTTTTAAGGTTGT+CGG - chr2_1:11536211-11536230 None:intergenic 20.0%
!!! ATGGTGTATAATATCTTTTA+AGG - chr2_1:11536218-11536237 None:intergenic 20.0%
!!! TACAATATATATGCTTTTTG+GGG + chr2_1:11536263-11536282 Msa0194950:intron 20.0%
!! TTAAATTGATCTTATGTACA+AGG + chr2_1:11536407-11536426 Msa0194950:intron 20.0%
!! TAAATTGATCTTATGTACAA+GGG + chr2_1:11536408-11536427 Msa0194950:intron 20.0%
!! TTTATACAGTGAAAAATTGT+TGG - chr2_1:11536509-11536528 None:intergenic 20.0%
!!! TTACAATGTTGATTAAACTT+GGG - chr2_1:11536947-11536966 None:intergenic 20.0%
!!! AAACTTTTTAGACTATTCTT+TGG + chr2_1:11537088-11537107 Msa0194950:intron 20.0%
!! TCAATAAATTATCTTTAGTG+GGG - chr2_1:11537114-11537133 None:intergenic 20.0%
!!! AATTTCCATTTATGCTTTTT+TGG + chr2_1:11537316-11537335 Msa0194950:intron 20.0%
!!! ATGCAATAAGTATGTTATTT+TGG + chr2_1:11537527-11537546 Msa0194950:intron 20.0%
!!! ATTCACATTTCTTAATTTGA+GGG - chr2_1:11538426-11538445 None:intergenic 20.0%
!! GAAGAATTGAGATAAAAAAA+AGG - chr2_1:11538467-11538486 None:intergenic 20.0%
!! ACCCTATAAATATTAAATAC+AGG - chr2_1:11538920-11538939 None:intergenic 20.0%
!!! GTTATATGGTTTGTAATTTT+TGG + chr2_1:11538990-11539009 Msa0194950:three_prime_UTR 20.0%
!!! ATCTGAATGTGTTTTGTTTT+AGG + chr2_1:11533778-11533797 Msa0194950:intron 25.0%
!!! TGTGTTTTGTTTTAGGTTAT+TGG + chr2_1:11533785-11533804 Msa0194950:intron 25.0%
! ACTAAATATTGCGTTCAATT+CGG + chr2_1:11533905-11533924 Msa0194950:intron 25.0%
!!! AAGCAAATATTCATTTTTCC+AGG + chr2_1:11533938-11533957 Msa0194950:intron 25.0%
! TTGAAATGCAGTATTATATG+AGG + chr2_1:11534131-11534150 Msa0194950:intron 25.0%
! CCATAATAATTTAGTGAAAC+AGG - chr2_1:11534229-11534248 None:intergenic 25.0%
! CCTGTTTCACTAAATTATTA+TGG + chr2_1:11534226-11534245 Msa0194950:CDS 25.0%
!!! GCGTTTTGTTTTTTTGAATA+TGG + chr2_1:11534329-11534348 Msa0194950:intron 25.0%
! TTATAATTAACAGGGTGAAA+AGG + chr2_1:11534387-11534406 Msa0194950:intron 25.0%
!! TGTTCATATTTTGTGAAAAC+GGG + chr2_1:11534412-11534431 Msa0194950:CDS 25.0%
! ATATTTCACAACTGAATAAG+AGG - chr2_1:11535165-11535184 None:intergenic 25.0%
!! AAAAAACTTCTTTTTCTACC+AGG - chr2_1:11535216-11535235 None:intergenic 25.0%
!! CAACAAATTACAGTAGTTTT+TGG + chr2_1:11535260-11535279 Msa0194950:intron 25.0%
!! TTGGTGATTAAAATAGCTAT+TGG + chr2_1:11535279-11535298 Msa0194950:intron 25.0%
! TTAAACTACTCATACATAGT+TGG + chr2_1:11535321-11535340 Msa0194950:intron 25.0%
!!! GAGTATTTTAATCATAGAGT+TGG + chr2_1:11535526-11535545 Msa0194950:intron 25.0%
! TAGCATTGTCTAAAAACTTA+AGG - chr2_1:11535712-11535731 None:intergenic 25.0%
!! CATTAATGTATTGATCATGA+AGG + chr2_1:11535827-11535846 Msa0194950:intron 25.0%
! CAGATCTAATTATAATATGC+AGG - chr2_1:11535895-11535914 None:intergenic 25.0%
! GAAATACAAAAACTCACTAT+TGG - chr2_1:11535921-11535940 None:intergenic 25.0%
! CAAAAAAACTTCCATGTATA+TGG - chr2_1:11535977-11535996 None:intergenic 25.0%
!!! CATATACATGGAAGTTTTTT+TGG + chr2_1:11535975-11535994 Msa0194950:intron 25.0%
!! ATAGCTATATACTCTTTTAG+GGG + chr2_1:11536120-11536139 Msa0194950:intron 25.0%
!!! TAATATCTTTTAAGGTTGTC+GGG - chr2_1:11536210-11536229 None:intergenic 25.0%
!!! ACAATATATATGCTTTTTGG+GGG + chr2_1:11536264-11536283 Msa0194950:intron 25.0%
! AACCTAACAAGCTATTTATT+AGG - chr2_1:11536434-11536453 None:intergenic 25.0%
! AGTTTATTTGATAGGCTTAT+TGG + chr2_1:11536656-11536675 Msa0194950:intron 25.0%
!! CTTACAATGTTGATTAAACT+TGG - chr2_1:11536948-11536967 None:intergenic 25.0%
!!! TGTAAAAGCATAGGTATTTT+AGG + chr2_1:11537005-11537024 Msa0194950:intron 25.0%
! AGCATAAATGGAAATTATGT+TGG - chr2_1:11537312-11537331 None:intergenic 25.0%
!! ATAGACCAAAAAAGCATAAA+TGG - chr2_1:11537324-11537343 None:intergenic 25.0%
!! TCTATCACATAATGTCATTT+AGG + chr2_1:11537487-11537506 Msa0194950:intron 25.0%
!! CAAACCTAATCTAAAATTAC+AGG - chr2_1:11537714-11537733 None:intergenic 25.0%
!!! TCTTTTTAAAAGACACACTT+AGG + chr2_1:11537933-11537952 Msa0194950:intron 25.0%
! AAAGCAGTAGAATAATAGTT+TGG - chr2_1:11537990-11538009 None:intergenic 25.0%
!! TTCACATTTCTTAATTTGAG+GGG - chr2_1:11538425-11538444 None:intergenic 25.0%
!! CATTCACATTTCTTAATTTG+AGG - chr2_1:11538427-11538446 None:intergenic 25.0%
! CAACCAAATATCATTATTCA+AGG + chr2_1:11538486-11538505 Msa0194950:three_prime_UTR 25.0%
! TTTATTCAAGATCAAAGGAA+TGG - chr2_1:11538623-11538642 None:intergenic 25.0%
!!! CATGTTTTATTCAAGATCAA+AGG - chr2_1:11538628-11538647 None:intergenic 25.0%
! CTTTGATCTTGAATAAAACA+TGG + chr2_1:11538626-11538645 Msa0194950:three_prime_UTR 25.0%
! ATTGCTACCTAATTCAAAAA+GGG - chr2_1:11538856-11538875 None:intergenic 25.0%
! AATTGCTACCTAATTCAAAA+AGG - chr2_1:11538857-11538876 None:intergenic 25.0%
! TTTACTGTTGAGAAATAATC+AGG + chr2_1:11538939-11538958 Msa0194950:three_prime_UTR 25.0%
! CTTCACATTGTTATGTTATA+TGG + chr2_1:11538976-11538995 Msa0194950:three_prime_UTR 25.0%
! CTTGGTATTTGAACTTATTA+CGG + chr2_1:11539047-11539066 Msa0194950:three_prime_UTR 25.0%
!! AATCTATCTTCTAGAATGAG+AGG - chr2_1:11533382-11533401 None:intergenic 30.0%
GAAGATAGATTACTCTTCAA+TGG + chr2_1:11533391-11533410 Msa0194950:exon 30.0%
TGTTTGTTTACCTTCTAAAC+CGG - chr2_1:11533480-11533499 None:intergenic 30.0%
!!! TATTTGAGAACTGGTTTTTG+TGG + chr2_1:11533639-11533658 Msa0194950:CDS 30.0%
AAGGAAAAATAGAAAGAACC+TGG - chr2_1:11533865-11533884 None:intergenic 30.0%
!!! CAAACACATACTACTTTTTC+AGG - chr2_1:11534033-11534052 None:intergenic 30.0%
CTGAAAAAGTAGTATGTGTT+TGG + chr2_1:11534031-11534050 Msa0194950:intron 30.0%
! TCTTCATAGTATGTGCATTT+TGG + chr2_1:11534081-11534100 Msa0194950:intron 30.0%
! AATATGGAAATGTTTTCGTC+TGG + chr2_1:11534345-11534364 Msa0194950:intron 30.0%
! GTTCATATTTTGTGAAAACG+GGG + chr2_1:11534413-11534432 Msa0194950:CDS 30.0%
TAATGATACTCTGGTTGATT+AGG - chr2_1:11534988-11535007 None:intergenic 30.0%
TTGGAGTAATAATGATACTC+TGG - chr2_1:11534997-11535016 None:intergenic 30.0%
AGTTGTGAAATATATCTCCA+CGG + chr2_1:11535172-11535191 Msa0194950:intron 30.0%
!! ACTACTGTAATTTGTTGAAG+AGG - chr2_1:11535257-11535276 None:intergenic 30.0%
AATTATGCATAAATGCCCAT+TGG + chr2_1:11535501-11535520 Msa0194950:intron 30.0%
ATTATGCATAAATGCCCATT+GGG + chr2_1:11535502-11535521 Msa0194950:intron 30.0%
ATACACTATGATTGTACTCT+GGG + chr2_1:11535583-11535602 Msa0194950:intron 30.0%
TTTCGTCTGCATAATTACTA+GGG + chr2_1:11535798-11535817 Msa0194950:intron 30.0%
ATACTTCTTTCCCATATACA+TGG + chr2_1:11535963-11535982 Msa0194950:intron 30.0%
CCATACAAATATGATCAGTA+TGG - chr2_1:11536237-11536256 None:intergenic 30.0%
CCATACTGATCATATTTGTA+TGG + chr2_1:11536234-11536253 Msa0194950:intron 30.0%
TGAGCTAGTTAATATCTCAA+TGG + chr2_1:11536332-11536351 Msa0194950:intron 30.0%
GAGCTAGTTAATATCTCAAT+GGG + chr2_1:11536333-11536352 Msa0194950:intron 30.0%
AACTTGAATTGAGCATGAAT+GGG - chr2_1:11536388-11536407 None:intergenic 30.0%
AAACTTGAATTGAGCATGAA+TGG - chr2_1:11536389-11536408 None:intergenic 30.0%
!! AAATAGCTTGTTAGGTTCAT+AGG + chr2_1:11536437-11536456 Msa0194950:intron 30.0%
TGCCTACAATAGTTTCATAA+TGG + chr2_1:11536538-11536557 Msa0194950:intron 30.0%
GCCTACAATAGTTTCATAAT+GGG + chr2_1:11536539-11536558 Msa0194950:intron 30.0%
! TTTTGGTGAGTTAAAAAGCT+AGG - chr2_1:11536595-11536614 None:intergenic 30.0%
!!! ACTCAAGTGACATTTTTTCA+AGG - chr2_1:11536698-11536717 None:intergenic 30.0%
CACTTGAGTTTGAATTTGAT+TGG + chr2_1:11536709-11536728 Msa0194950:intron 30.0%
CATATATATTCTCAACGCTT+GGG + chr2_1:11536734-11536753 Msa0194950:intron 30.0%
!! AGAGTGATTAGGTTTTATGA+TGG + chr2_1:11536880-11536899 Msa0194950:intron 30.0%
TTCTTCCAATTTCATCTGTA+TGG - chr2_1:11536906-11536925 None:intergenic 30.0%
AGATCCAATTCTTAAGAACT+TGG + chr2_1:11537204-11537223 Msa0194950:intron 30.0%
TCAACCAAGTTCTTAAGAAT+TGG - chr2_1:11537211-11537230 None:intergenic 30.0%
ATAAGAGTTTAGATCAAGTG+CGG - chr2_1:11537282-11537301 None:intergenic 30.0%
AAGTAAAGAGAATGCAAAAC+TGG - chr2_1:11537444-11537463 None:intergenic 30.0%
!!! GTATGTTATTTTGGTTTGTG+CGG + chr2_1:11537536-11537555 Msa0194950:intron 30.0%
! CCTAATCTAAAATTACAGGA+AGG - chr2_1:11537710-11537729 None:intergenic 30.0%
! CCTTCCTGTAATTTTAGATT+AGG + chr2_1:11537707-11537726 Msa0194950:intron 30.0%
TTCCATATTATAGACCAGAT+TGG + chr2_1:11537743-11537762 Msa0194950:intron 30.0%
TTCATCCATTAGTGTTTAGT+TGG + chr2_1:11537859-11537878 Msa0194950:intron 30.0%
AAAGTCCAACTAAACACTAA+TGG - chr2_1:11537867-11537886 None:intergenic 30.0%
ATTAGTGTTTAGTTGGACTT+TGG + chr2_1:11537866-11537885 Msa0194950:intron 30.0%
!! TCCAATGTTTTTGTTTGATC+AGG + chr2_1:11538023-11538042 Msa0194950:intron 30.0%
!! CCAATGTTTTTGTTTGATCA+GGG + chr2_1:11538024-11538043 Msa0194950:intron 30.0%
CCTCCTTGAATAATGATATT+TGG - chr2_1:11538492-11538511 None:intergenic 30.0%
CCAAATATCATTATTCAAGG+AGG + chr2_1:11538489-11538508 Msa0194950:three_prime_UTR 30.0%
!! TTAGGAGTTATTCTAAAGCA+AGG - chr2_1:11538686-11538705 None:intergenic 30.0%
AATGGAATTGCAGATTCTTT+AGG - chr2_1:11538704-11538723 None:intergenic 30.0%
GTTCTCATATGAAAGAAGAT+TGG - chr2_1:11538783-11538802 None:intergenic 30.0%
! GCAATTTTCCATTTCTGTTT+TGG + chr2_1:11538871-11538890 Msa0194950:three_prime_UTR 30.0%
TGTAAAATGCAGAACCTATG+TGG + chr2_1:11533553-11533572 Msa0194950:intron 35.0%
TGCACTTACTATTTGAGAAC+TGG + chr2_1:11533630-11533649 Msa0194950:CDS 35.0%
! AATGAAAGAGTTGATTACCG+CGG - chr2_1:11533706-11533725 None:intergenic 35.0%
CATGAGTTATTCAATGAACC+TGG - chr2_1:11533959-11533978 None:intergenic 35.0%
AGGACAAGATCTTGCAAATT+TGG + chr2_1:11534151-11534170 Msa0194950:CDS 35.0%
TATATACATACCGGACGTAA+CGG - chr2_1:11534256-11534275 None:intergenic 35.0%
GACCTTCTTCACAACAAATT+GGG + chr2_1:11534581-11534600 Msa0194950:CDS 35.0%
ACCTTCTTCACAACAAATTG+GGG + chr2_1:11534582-11534601 Msa0194950:CDS 35.0%
!! AAGTTGATAAGGTCCAGTAT+AGG - chr2_1:11534905-11534924 None:intergenic 35.0%
TCATTATTACTCCAAACCAG+AGG + chr2_1:11535002-11535021 Msa0194950:CDS 35.0%
! TTCCTTTTGCTCCATCTTAT+AGG + chr2_1:11535028-11535047 Msa0194950:CDS 35.0%
TACCTATAAGATGGAGCAAA+AGG - chr2_1:11535033-11535052 None:intergenic 35.0%
GGTTTGTGATACCTATAAGA+TGG - chr2_1:11535042-11535061 None:intergenic 35.0%
AGTTGAGAGGAAATCATTAC+CGG - chr2_1:11535126-11535145 None:intergenic 35.0%
! TTTTTCTACCAGGTGAAAGA+GGG - chr2_1:11535206-11535225 None:intergenic 35.0%
GATTAAAATAGCTATTGGCG+AGG + chr2_1:11535284-11535303 Msa0194950:intron 35.0%
GATTAAAATACTCGCCCAAT+GGG - chr2_1:11535519-11535538 None:intergenic 35.0%
TGATTAAAATACTCGCCCAA+TGG - chr2_1:11535520-11535539 None:intergenic 35.0%
GATACACTATGATTGTACTC+TGG + chr2_1:11535582-11535601 Msa0194950:intron 35.0%
TACACTATGATTGTACTCTG+GGG + chr2_1:11535584-11535603 Msa0194950:intron 35.0%
CACACTGAAAGATGTTGAAT+AGG - chr2_1:11535628-11535647 None:intergenic 35.0%
CTATTCAACATCTTTCAGTG+TGG + chr2_1:11535626-11535645 Msa0194950:intron 35.0%
AACACAAAGAATCATGATCG+AGG + chr2_1:11535731-11535750 Msa0194950:intron 35.0%
ACACAAAGAATCATGATCGA+GGG + chr2_1:11535732-11535751 Msa0194950:intron 35.0%
GTTTCGTCTGCATAATTACT+AGG + chr2_1:11535797-11535816 Msa0194950:intron 35.0%
! TCACCTTAAGGAGTACATAT+GGG - chr2_1:11535862-11535881 None:intergenic 35.0%
! ATCACCTTAAGGAGTACATA+TGG - chr2_1:11535863-11535882 None:intergenic 35.0%
GAAGTATATGCATGCTGAAA+AGG - chr2_1:11535950-11535969 None:intergenic 35.0%
!! ATACTCTTTTAGGGGTATGA+TGG + chr2_1:11536128-11536147 Msa0194950:intron 35.0%
ATGGTCCTTAAAATGATACC+AGG + chr2_1:11536147-11536166 Msa0194950:intron 35.0%
TGGTCCTTAAAATGATACCA+GGG + chr2_1:11536148-11536167 Msa0194950:intron 35.0%
! CTTTCCCTGGTATCATTTTA+AGG - chr2_1:11536155-11536174 None:intergenic 35.0%
ATAATCCTCAGAATTACCAG+TGG + chr2_1:11536300-11536319 Msa0194950:intron 35.0%
!! GGCCTAATAAATAGCTTGTT+AGG + chr2_1:11536429-11536448 Msa0194950:intron 35.0%
GCCCATTATGAAACTATTGT+AGG - chr2_1:11536543-11536562 None:intergenic 35.0%
GCATATATATTCTCAACGCT+TGG + chr2_1:11536733-11536752 Msa0194950:intron 35.0%
GCAAAACTAACTCTTGGTAT+GGG - chr2_1:11536779-11536798 None:intergenic 35.0%
TGCAAAACTAACTCTTGGTA+TGG - chr2_1:11536780-11536799 None:intergenic 35.0%
ATCTATGAGTACCAACTGAA+AGG - chr2_1:11536829-11536848 None:intergenic 35.0%
CAACATTGTAAGAAGTCTTG+AGG + chr2_1:11536956-11536975 Msa0194950:intron 35.0%
ATTGTAAGAAGTCTTGAGGA+CGG + chr2_1:11536960-11536979 Msa0194950:intron 35.0%
!! CTTTGCTGTTGTTTAAGAGT+TGG + chr2_1:11537175-11537194 Msa0194950:intron 35.0%
TAGATCAAGTGCGGAAAATA+GGG - chr2_1:11537273-11537292 None:intergenic 35.0%
TTAGATCAAGTGCGGAAAAT+AGG - chr2_1:11537274-11537293 None:intergenic 35.0%
! CTCTCTTAAACTCGTGATTT+TGG + chr2_1:11537345-11537364 Msa0194950:intron 35.0%
AGAATGCAAAACTGGAAAAG+CGG - chr2_1:11537436-11537455 None:intergenic 35.0%
CATAGGATTCAGCGATAAAA+CGG - chr2_1:11537652-11537671 None:intergenic 35.0%
!!! CTAGTTATGGCCAAGTTTTT+TGG + chr2_1:11537680-11537699 Msa0194950:intron 35.0%
CTCCAATCTGGTCTATAATA+TGG - chr2_1:11537748-11537767 None:intergenic 35.0%
! CTTCCTGATTCTTTTGAATG+TGG + chr2_1:11537770-11537789 Msa0194950:intron 35.0%
! TTTAGTTGGACTTTGGTTCA+AGG + chr2_1:11537873-11537892 Msa0194950:intron 35.0%
CCCTGATCAAACAAAAACAT+TGG - chr2_1:11538027-11538046 None:intergenic 35.0%
! ACTGATGACGATATTCTAGA+AGG - chr2_1:11538279-11538298 None:intergenic 35.0%
!!! GTCGTCAAATAGGGTTTTTT+TGG + chr2_1:11538511-11538530 Msa0194950:three_prime_UTR 35.0%
TAGGACTTCCAAAACAGAAA+TGG - chr2_1:11538882-11538901 None:intergenic 35.0%
TGACAATCAAAAGCTTGACT+TGG + chr2_1:11539029-11539048 Msa0194950:three_prime_UTR 35.0%
!! AGAGAAAGTGAGGTGTTGTT+GGG - chr2_1:11533318-11533337 None:intergenic 40.0%
TTGTAGAGAGAGAGAAAGTG+AGG - chr2_1:11533328-11533347 None:intergenic 40.0%
ACCCTTCCTTTCCATTTCAT+CGG + chr2_1:11533354-11533373 Msa0194950:five_prime_UTR 40.0%
TCCGATGAAATGGAAAGGAA+GGG - chr2_1:11533358-11533377 None:intergenic 40.0%
TTCCGATGAAATGGAAAGGA+AGG - chr2_1:11533359-11533378 None:intergenic 40.0%
AATGAGAGGTTCCGATGAAA+TGG - chr2_1:11533368-11533387 None:intergenic 40.0%
!! TCTAAACCGGTTTGAGAATC+CGG - chr2_1:11533467-11533486 None:intergenic 40.0%
! GATTCTCAAACCGGTTTAGA+AGG + chr2_1:11533467-11533486 Msa0194950:CDS 40.0%
TAAGTGCAATCAACCTCATC+AGG - chr2_1:11533618-11533637 None:intergenic 40.0%
!!! AGAACTGGTTTTTGTGGCTT+TGG + chr2_1:11533645-11533664 Msa0194950:CDS 40.0%
!!! GTTTTTGTGGCTTTGGTTCT+AGG + chr2_1:11533652-11533671 Msa0194950:CDS 40.0%
TATCATCATCCGAAACAGAC+AGG + chr2_1:11534187-11534206 Msa0194950:CDS 40.0%
TTATGGATATCCGTTACGTC+CGG + chr2_1:11534243-11534262 Msa0194950:CDS 40.0%
ATTTGTACACTAGCAGGAAC+TGG - chr2_1:11534475-11534494 None:intergenic 40.0%
TACATGTAAAGGTGAAACCG+GGG - chr2_1:11534518-11534537 None:intergenic 40.0%
GTACATGTAAAGGTGAAACC+GGG - chr2_1:11534519-11534538 None:intergenic 40.0%
GGTACATGTAAAGGTGAAAC+CGG - chr2_1:11534520-11534539 None:intergenic 40.0%
!! GAAGGTACTGGTACATGTAA+AGG - chr2_1:11534529-11534548 None:intergenic 40.0%
TCTGTACGGTTGGATACAAT+GGG - chr2_1:11534552-11534571 None:intergenic 40.0%
GGACCTTCTTCACAACAAAT+TGG + chr2_1:11534580-11534599 Msa0194950:CDS 40.0%
!! ACCCCAATTTGTTGTGAAGA+AGG - chr2_1:11534586-11534605 None:intergenic 40.0%
TTCACAACAAATTGGGGTAC+TGG + chr2_1:11534588-11534607 Msa0194950:CDS 40.0%
ACAAACGAACCATGTAGTAG+AGG - chr2_1:11534625-11534644 None:intergenic 40.0%
ACAATACCATAGGTCCATAG+GGG - chr2_1:11534654-11534673 None:intergenic 40.0%
GACAATACCATAGGTCCATA+GGG - chr2_1:11534655-11534674 None:intergenic 40.0%
AGAAAAAGGAACCATGGTTG+GGG - chr2_1:11534677-11534696 None:intergenic 40.0%
CAGAAAAAGGAACCATGGTT+GGG - chr2_1:11534678-11534697 None:intergenic 40.0%
CTGTTAATCGTTGAGCTCTT+TGG + chr2_1:11534777-11534796 Msa0194950:intron 40.0%
ACTGGACCTTATCAACTTTC+TGG + chr2_1:11534907-11534926 Msa0194950:CDS 40.0%
!! GAGGAACCAGAAAGTTGATA+AGG - chr2_1:11534916-11534935 None:intergenic 40.0%
TCGTTCTGATTTCTGCTTGA+AGG - chr2_1:11534946-11534965 None:intergenic 40.0%
GAAATCATTACCGGACGTAA+CGG - chr2_1:11535117-11535136 None:intergenic 40.0%
CAGAGTACAAAGAAGTTGAG+AGG - chr2_1:11535139-11535158 None:intergenic 40.0%
CTCTCAACTTCTTTGTACTC+TGG + chr2_1:11535137-11535156 Msa0194950:intron 40.0%
! CTTTTTCTACCAGGTGAAAG+AGG - chr2_1:11535207-11535226 None:intergenic 40.0%
TTCCCCATATGTACTCCTTA+AGG + chr2_1:11535856-11535875 Msa0194950:intron 40.0%
! CACCTTAAGGAGTACATATG+GGG - chr2_1:11535861-11535880 None:intergenic 40.0%
GGACACAAGAAATCACCTTA+AGG - chr2_1:11535874-11535893 None:intergenic 40.0%
ATAGCTATACACTCTTTCCC+TGG - chr2_1:11536168-11536187 None:intergenic 40.0%
TAGCTCAATTTGAATGCCAC+TGG - chr2_1:11536319-11536338 None:intergenic 40.0%
!! CAATAGTTTCATAATGGGCC+CGG + chr2_1:11536544-11536563 Msa0194950:intron 40.0%
TCGCATGCAAAACTAACTCT+TGG - chr2_1:11536785-11536804 None:intergenic 40.0%
!! TAGTTTTGCATGCGACTTAG+TGG + chr2_1:11536790-11536809 Msa0194950:intron 40.0%
ATGCGACTTAGTGGTTGTTT+GGG + chr2_1:11536799-11536818 Msa0194950:intron 40.0%
ATAGATGTTCATGCCCCATA+AGG + chr2_1:11536843-11536862 Msa0194950:intron 40.0%
GATGGCCATACAGATGAAAT+TGG + chr2_1:11536898-11536917 Msa0194950:intron 40.0%
TTGTAAGAAGTCTTGAGGAC+GGG + chr2_1:11536961-11536980 Msa0194950:intron 40.0%
! GGCAGTACTTGTAAAAGCAT+AGG + chr2_1:11536996-11537015 Msa0194950:intron 40.0%
CATAACTAGCATGGGAACAT+AGG - chr2_1:11537669-11537688 None:intergenic 40.0%
CTATGTTCCCATGCTAGTTA+TGG + chr2_1:11537667-11537686 Msa0194950:intron 40.0%
AACTTGGCCATAACTAGCAT+GGG - chr2_1:11537677-11537696 None:intergenic 40.0%
AAACTTGGCCATAACTAGCA+TGG - chr2_1:11537678-11537697 None:intergenic 40.0%
GGAAGGACATCCAAAAAACT+TGG - chr2_1:11537693-11537712 None:intergenic 40.0%
CCACCACATTCAAAAGAATC+AGG - chr2_1:11537776-11537795 None:intergenic 40.0%
! CCTGATTCTTTTGAATGTGG+TGG + chr2_1:11537773-11537792 Msa0194950:intron 40.0%
GGATGATCAAATTTGCATGC+AGG - chr2_1:11538099-11538118 None:intergenic 40.0%
!! TGAAGGAACAAGAGTACCAA+CGG - chr2_1:11538199-11538218 None:intergenic 40.0%
AACTCTGGTGAAGAAGATGA+AGG - chr2_1:11538216-11538235 None:intergenic 40.0%
TCATCAGTAAGCACATCAAC+TGG + chr2_1:11538291-11538310 Msa0194950:CDS 40.0%
GAGTGCTTGATTGAGAAACA+GGG - chr2_1:11538347-11538366 None:intergenic 40.0%
! ATTGCTACTTGTCGTGGTAT+TGG - chr2_1:11538394-11538413 None:intergenic 40.0%
! AGAAACATTGCTACTTGTCG+TGG - chr2_1:11538400-11538419 None:intergenic 40.0%
ATTCAAGGAGGTCGTCAAAT+AGG + chr2_1:11538501-11538520 Msa0194950:three_prime_UTR 40.0%
TTCAAGGAGGTCGTCAAATA+GGG + chr2_1:11538502-11538521 Msa0194950:three_prime_UTR 40.0%
AATGTGGAACTGGGATAACT+GGG - chr2_1:11538545-11538564 None:intergenic 40.0%
CTAGATCTGAATGTGGAACT+GGG - chr2_1:11538554-11538573 None:intergenic 40.0%
AAGTGTGCTAGATCTGAATG+TGG - chr2_1:11538561-11538580 None:intergenic 40.0%
! ATGGGTTGCTAAAGTTCTCA+TGG - chr2_1:11538656-11538675 None:intergenic 40.0%
!! GGAGTTATTCTAAAGCAAGG+CGG - chr2_1:11538683-11538702 None:intergenic 40.0%
CCAAATATTGGAGATGTGGA+TGG - chr2_1:11538737-11538756 None:intergenic 40.0%
CCATCCACATCTCCAATATT+TGG + chr2_1:11538734-11538753 Msa0194950:three_prime_UTR 40.0%
GACTCCAAATATTGGAGATG+TGG - chr2_1:11538741-11538760 None:intergenic 40.0%
GCACAACAGACTCCAAATAT+TGG - chr2_1:11538749-11538768 None:intergenic 40.0%
ACACATGGTCAATGAAAGTC+TGG - chr2_1:11538813-11538832 None:intergenic 40.0%
TAATTCAAAAAGGGCTCAGG+TGG - chr2_1:11538847-11538866 None:intergenic 40.0%
! ACCTGAGCCCTTTTTGAATT+AGG + chr2_1:11538846-11538865 Msa0194950:three_prime_UTR 40.0%
ACCTAATTCAAAAAGGGCTC+AGG - chr2_1:11538850-11538869 None:intergenic 40.0%
!! CAGGTTGGGAAGTATTGAAT+AGG - chr2_1:11538901-11538920 None:intergenic 40.0%
ATAATCAGGAGACTGCAATG+AGG + chr2_1:11538953-11538972 Msa0194950:three_prime_UTR 40.0%
!! GAGAGAAAGTGAGGTGTTGT+TGG - chr2_1:11533319-11533338 None:intergenic 45.0%
AAATGGAAAGGAAGGGTGGT+TGG - chr2_1:11533351-11533370 None:intergenic 45.0%
GATGAAATGGAAAGGAAGGG+TGG - chr2_1:11533355-11533374 None:intergenic 45.0%
GAGGTTCCGATGAAATGGAA+AGG - chr2_1:11533363-11533382 None:intergenic 45.0%
AACCTGATCCGTCTTCTCAA+TGG + chr2_1:11533435-11533454 Msa0194950:CDS 45.0%
TGCAGAACCTATGTGGCAAT+TGG + chr2_1:11533560-11533579 Msa0194950:intron 45.0%
GCAGAACCTATGTGGCAATT+GGG + chr2_1:11533561-11533580 Msa0194950:intron 45.0%
CAGAACCTATGTGGCAATTG+GGG + chr2_1:11533562-11533581 Msa0194950:intron 45.0%
AGGTTATTGGAGCTGCTTCT+AGG + chr2_1:11533798-11533817 Msa0194950:intron 45.0%
ATAGAAAGAACCTGGCACAC+AGG - chr2_1:11533857-11533876 None:intergenic 45.0%
AAAACGGGGCAATGCAAGTT+TGG + chr2_1:11534427-11534446 Msa0194950:CDS 45.0%
GCTGGAATTTGTACACTAGC+AGG - chr2_1:11534481-11534500 None:intergenic 45.0%
ACATGTAAAGGTGAAACCGG+GGG - chr2_1:11534517-11534536 None:intergenic 45.0%
CTGTACGGTTGGATACAATG+GGG - chr2_1:11534551-11534570 None:intergenic 45.0%
GTCTGTACGGTTGGATACAA+TGG - chr2_1:11534553-11534572 None:intergenic 45.0%
TGTTGTGAAGAAGGTCCAGA+TGG - chr2_1:11534577-11534596 None:intergenic 45.0%
AACGAACCATGTAGTAGAGG+TGG - chr2_1:11534622-11534641 None:intergenic 45.0%
GGACAATACCATAGGTCCAT+AGG - chr2_1:11534656-11534675 None:intergenic 45.0%
ATGGTTGGGGACAATACCAT+AGG - chr2_1:11534664-11534683 None:intergenic 45.0%
TATGGTATTGTCCCCAACCA+TGG + chr2_1:11534663-11534682 Msa0194950:CDS 45.0%
CCAGAAAAAGGAACCATGGT+TGG - chr2_1:11534679-11534698 None:intergenic 45.0%
! CCAACCATGGTTCCTTTTTC+TGG + chr2_1:11534676-11534695 Msa0194950:CDS 45.0%
!!! CATGGTTCCTTTTTCTGGCT+GGG + chr2_1:11534681-11534700 Msa0194950:CDS 45.0%
!!! ATGGTTCCTTTTTCTGGCTG+GGG + chr2_1:11534682-11534701 Msa0194950:CDS 45.0%
! TTGGCTTGACCTACCTGATA+AGG - chr2_1:11534709-11534728 None:intergenic 45.0%
! ATCGTTGAGCTCTTTGGTTC+AGG + chr2_1:11534783-11534802 Msa0194950:intron 45.0%
! GAGAACCAGAAGGAAGTACA+GGG - chr2_1:11534822-11534841 None:intergenic 45.0%
ACATTAGCTGGAGAACCAGA+AGG - chr2_1:11534832-11534851 None:intergenic 45.0%
!! TCTGGTTCTCCAGCTAATGT+TGG + chr2_1:11534832-11534851 Msa0194950:CDS 45.0%
! TTGGCTCCACACAGCTTTAT+GGG + chr2_1:11534851-11534870 Msa0194950:CDS 45.0%
GGTTATCCCATAAAGCTGTG+TGG - chr2_1:11534860-11534879 None:intergenic 45.0%
!! CAACTTTCTGGTTCCTCAGT+CGG + chr2_1:11534919-11534938 Msa0194950:CDS 45.0%
TCTGGTTGATTAGGACTTGC+TGG - chr2_1:11534979-11534998 None:intergenic 45.0%
AAAAGGAAGCTCCTCTGGTT+TGG - chr2_1:11535016-11535035 None:intergenic 45.0%
!! ACTTTTGGTGCACTCATGTC+TGG - chr2_1:11535066-11535085 None:intergenic 45.0%
! CTAAGGACGGCATTCACTTT+TGG - chr2_1:11535081-11535100 None:intergenic 45.0%
TTCATCTTCCCTCTTTCACC+TGG + chr2_1:11535195-11535214 Msa0194950:intron 45.0%
ATATGTTCTCTGCCAGAGCA+GGG + chr2_1:11535649-11535668 Msa0194950:intron 45.0%
GAATGCCACTGGTAATTCTG+AGG - chr2_1:11536308-11536327 None:intergenic 45.0%
GATAGGCTTATTGGACTGAG+TGG + chr2_1:11536665-11536684 Msa0194950:intron 45.0%
CATGCGACTTAGTGGTTGTT+TGG + chr2_1:11536798-11536817 Msa0194950:intron 45.0%
TGCGACTTAGTGGTTGTTTG+GGG + chr2_1:11536800-11536819 Msa0194950:intron 45.0%
! GTTTGGGGTAACCTTTCAGT+TGG + chr2_1:11536815-11536834 Msa0194950:intron 45.0%
ATGTTCATGCCCCATAAGGT+AGG + chr2_1:11536847-11536866 Msa0194950:intron 45.0%
TGTTCATGCCCCATAAGGTA+GGG + chr2_1:11536848-11536867 Msa0194950:intron 45.0%
!! TGTTGCTGACTCAATGCAGT+GGG + chr2_1:11537144-11537163 Msa0194950:intron 45.0%
CCAGGGGAGATGCATATTTA+GGG - chr2_1:11537247-11537266 None:intergenic 45.0%
CAGCGATAAAACGGATGACA+GGG - chr2_1:11537643-11537662 None:intergenic 45.0%
TCAGCGATAAAACGGATGAC+AGG - chr2_1:11537644-11537663 None:intergenic 45.0%
!! AATCAGGAAGCACTCCAATC+TGG - chr2_1:11537760-11537779 None:intergenic 45.0%
AGACAGCAATAACAGCTGAG+TGG - chr2_1:11537836-11537855 None:intergenic 45.0%
CAGCGTGGTATATGCAAGTT+TGG + chr2_1:11538072-11538091 Msa0194950:CDS 45.0%
CTGTAACTCAGTGGTGCAAT+AGG - chr2_1:11538120-11538139 None:intergenic 45.0%
TGCAACTGGTACATCTGTCA+GGG - chr2_1:11538157-11538176 None:intergenic 45.0%
ACGGATGAACCCACAAAGTA+GGG - chr2_1:11538180-11538199 None:intergenic 45.0%
AACGGATGAACCCACAAAGT+AGG - chr2_1:11538181-11538200 None:intergenic 45.0%
TACTTTGTGGGTTCATCCGT+TGG + chr2_1:11538180-11538199 Msa0194950:CDS 45.0%
TTGGATCCTGCAGTAAGTTC+TGG - chr2_1:11538243-11538262 None:intergenic 45.0%
AACTTACTGCAGGATCCAAC+AGG + chr2_1:11538244-11538263 Msa0194950:CDS 45.0%
ACTTACTGCAGGATCCAACA+GGG + chr2_1:11538245-11538264 Msa0194950:CDS 45.0%
AGCACATCAACTGGATCAGT+TGG + chr2_1:11538300-11538319 Msa0194950:CDS 45.0%
CGAGTGCTTGATTGAGAAAC+AGG - chr2_1:11538348-11538367 None:intergenic 45.0%
GAATGTGGAACTGGGATAAC+TGG - chr2_1:11538546-11538565 None:intergenic 45.0%
GCTAGATCTGAATGTGGAAC+TGG - chr2_1:11538555-11538574 None:intergenic 45.0%
!! ATTATTATAATAAAATTTCT+AGG + chr2_1:11535372-11535391 Msa0194950:intron 5.0%
AAAGTGTGTCTATGTCCGCG+TGG + chr2_1:11533243-11533262 Msa0194950:five_prime_UTR 50.0%
AAGTGTGTCTATGTCCGCGT+GGG + chr2_1:11533244-11533263 Msa0194950:five_prime_UTR 50.0%
TGAGTCTAGTCTAACCCACG+CGG - chr2_1:11533261-11533280 None:intergenic 50.0%
!! AGAAGACGGATCAGGTTGAG+TGG - chr2_1:11533432-11533451 None:intergenic 50.0%
GTCCATTGAGAAGACGGATC+AGG - chr2_1:11533440-11533459 None:intergenic 50.0%
GATCCGTCTTCTCAATGGAC+CGG + chr2_1:11533440-11533459 Msa0194950:CDS 50.0%
ATCCGTCTTCTCAATGGACC+GGG + chr2_1:11533441-11533460 Msa0194950:CDS 50.0%
CCTAACCCCAATTGCCACAT+AGG - chr2_1:11533570-11533589 None:intergenic 50.0%
CCTATGTGGCAATTGGGGTT+AGG + chr2_1:11533567-11533586 Msa0194950:CDS 50.0%
ATGTGGCAATTGGGGTTAGG+TGG + chr2_1:11533570-11533589 Msa0194950:CDS 50.0%
CTCATCAGGTCGTTGTGGAT+AGG - chr2_1:11533604-11533623 None:intergenic 50.0%
CTATCCACAACGACCTGATG+AGG + chr2_1:11533602-11533621 Msa0194950:CDS 50.0%
TCAACCTCATCAGGTCGTTG+TGG - chr2_1:11533609-11533628 None:intergenic 50.0%
!! GTGGCTTTGGTTCTAGGTGT+CGG + chr2_1:11533658-11533677 Msa0194950:CDS 50.0%
! AAGAGTTGATTACCGCGGCA+CGG - chr2_1:11533701-11533720 None:intergenic 50.0%
!! GAGCTGCTTCTAGGACTGTT+GGG + chr2_1:11533807-11533826 Msa0194950:CDS 50.0%
!! AGCTGCTTCTAGGACTGTTG+GGG + chr2_1:11533808-11533827 Msa0194950:CDS 50.0%
TCAGTGGCTCCTGTCTGTTT+CGG - chr2_1:11534199-11534218 None:intergenic 50.0%
! TGAAACAGGGCTAGCATCAG+TGG - chr2_1:11534215-11534234 None:intergenic 50.0%
ACAAATTCCAGCTCCATCGC+CGG + chr2_1:11534489-11534508 Msa0194950:CDS 50.0%
! GGATACAATGGGGAAGGTAC+TGG - chr2_1:11534541-11534560 None:intergenic 50.0%
ACGGTTGGATACAATGGGGA+AGG - chr2_1:11534547-11534566 None:intergenic 50.0%
AGGTCCAGATGGAGTCTGTA+CGG - chr2_1:11534566-11534585 None:intergenic 50.0%
!! AAATTGGGGTACTGGTCGCA+AGG + chr2_1:11534596-11534615 Msa0194950:CDS 50.0%
CCAGCCAGAAAAAGGAACCA+TGG - chr2_1:11534683-11534702 None:intergenic 50.0%
!! CCATGGTTCCTTTTTCTGGC+TGG + chr2_1:11534680-11534699 Msa0194950:CDS 50.0%
TAAGGACCCCAGCCAGAAAA+AGG - chr2_1:11534691-11534710 None:intergenic 50.0%
ACAAGCCCTGTACTTCCTTC+TGG + chr2_1:11534814-11534833 Msa0194950:CDS 50.0%
! GGAGAACCAGAAGGAAGTAC+AGG - chr2_1:11534823-11534842 None:intergenic 50.0%
TGTGTGGAGCCAACATTAGC+TGG - chr2_1:11534844-11534863 None:intergenic 50.0%
! GTTGGCTCCACACAGCTTTA+TGG + chr2_1:11534850-11534869 Msa0194950:CDS 50.0%
GATAACCCAGCTACCTTCAC+CGG + chr2_1:11534873-11534892 Msa0194950:CDS 50.0%
ATAACCCAGCTACCTTCACC+GGG + chr2_1:11534874-11534893 Msa0194950:CDS 50.0%
ATTACCCGGTGAAGGTAGCT+GGG - chr2_1:11534881-11534900 None:intergenic 50.0%
GTATAGGCATTACCCGGTGA+AGG - chr2_1:11534889-11534908 None:intergenic 50.0%
TCACCGGGTAATGCCTATAC+TGG + chr2_1:11534889-11534908 Msa0194950:CDS 50.0%
GGTCCAGTATAGGCATTACC+CGG - chr2_1:11534895-11534914 None:intergenic 50.0%
! TTTGGTGCACTCATGTCTGG+TGG - chr2_1:11535063-11535082 None:intergenic 50.0%
GAAAGAGGGAAGATGAACCG+TGG - chr2_1:11535192-11535211 None:intergenic 50.0%
AGCACGAGCTCTATGAACAG+TGG - chr2_1:11535349-11535368 None:intergenic 50.0%
CTGGGGAAGTTCTGTCTGTA+AGG + chr2_1:11535601-11535620 Msa0194950:intron 50.0%
GATATGTTCTCTGCCAGAGC+AGG + chr2_1:11535648-11535667 Msa0194950:intron 50.0%
GTACACACTATTCCCTGCTC+TGG - chr2_1:11535664-11535683 None:intergenic 50.0%
ACCTGATATAGCTCCCACCA+TGG - chr2_1:11536570-11536589 None:intergenic 50.0%
TCAACGCTTGGGTTTGAGCT+TGG + chr2_1:11536745-11536764 Msa0194950:intron 50.0%
!! TACCGACTCCCTACCTTATG+GGG - chr2_1:11536859-11536878 None:intergenic 50.0%
!! CTACCGACTCCCTACCTTAT+GGG - chr2_1:11536860-11536879 None:intergenic 50.0%
!! TCTACCGACTCCCTACCTTA+TGG - chr2_1:11536861-11536880 None:intergenic 50.0%
GGAGTCGGTAGAGAGTGATT+AGG + chr2_1:11536869-11536888 Msa0194950:intron 50.0%
GAGGACGGGTGTAACATTTC+AGG + chr2_1:11536975-11536994 Msa0194950:intron 50.0%
GCATTGAGTCAGCAACACAG+TGG - chr2_1:11537141-11537160 None:intergenic 50.0%
!! GTGTTGCTGACTCAATGCAG+TGG + chr2_1:11537143-11537162 Msa0194950:intron 50.0%
!! GTTGCTGACTCAATGCAGTG+GGG + chr2_1:11537145-11537164 Msa0194950:intron 50.0%
CCCTAAATATGCATCTCCCC+TGG + chr2_1:11537244-11537263 Msa0194950:intron 50.0%
GCCAGGGGAGATGCATATTT+AGG - chr2_1:11537248-11537267 None:intergenic 50.0%
TGCGGAAAATAGGGATGCCA+GGG - chr2_1:11537264-11537283 None:intergenic 50.0%
TGGTACATCTGTCAGGGAAG+AGG - chr2_1:11538151-11538170 None:intergenic 50.0%
GTGCAACTGGTACATCTGTC+AGG - chr2_1:11538158-11538177 None:intergenic 50.0%
ACCAGTTGCACCCTACTTTG+TGG + chr2_1:11538167-11538186 Msa0194950:CDS 50.0%
CCAGTTGCACCCTACTTTGT+GGG + chr2_1:11538168-11538187 Msa0194950:CDS 50.0%
! GTAAGTTCTGGCTGCAACTC+TGG - chr2_1:11538231-11538250 None:intergenic 50.0%
TTGCAGCCAGAACTTACTGC+AGG + chr2_1:11538234-11538253 Msa0194950:CDS 50.0%
AGAAGGAACAGACTCCCTGT+TGG - chr2_1:11538262-11538281 None:intergenic 50.0%
!! GTTGGCTTGACTTTGCCAAC+TGG + chr2_1:11538318-11538337 Msa0194950:CDS 50.0%
!! GTGGTATTGGCAGGTGCTAA+AGG - chr2_1:11538381-11538400 None:intergenic 50.0%
!! CTACTTGTCGTGGTATTGGC+AGG - chr2_1:11538390-11538409 None:intergenic 50.0%
CTAAAGCAAGGCGGCTGTAT+GGG - chr2_1:11538674-11538693 None:intergenic 50.0%
! TCTAAAGCAAGGCGGCTGTA+TGG - chr2_1:11538675-11538694 None:intergenic 50.0%
GTGGATGGACATGTGCACAA+TGG - chr2_1:11538722-11538741 None:intergenic 50.0%
! GTGGAAGAGGCGTAAACACA+TGG - chr2_1:11538828-11538847 None:intergenic 50.0%
AAAAAGGGCTCAGGTGGAAG+AGG - chr2_1:11538841-11538860 None:intergenic 50.0%
GTTGAGTGGAGCGAGGAAAG+TGG - chr2_1:11533418-11533437 None:intergenic 55.0%
!! GGAGCTGCTTCTAGGACTGT+TGG + chr2_1:11533806-11533825 Msa0194950:CDS 55.0%
!! GGGGAGTATCCTGAACGTGT+TGG + chr2_1:11533827-11533846 Msa0194950:CDS 55.0%
ACAGGCTGTCCAACACGTTC+AGG - chr2_1:11533839-11533858 None:intergenic 55.0%
AAAGGTGAAACCGGGGGAAC+CGG - chr2_1:11534511-11534530 None:intergenic 55.0%
CCAGATGGAGTCTGTACGGT+TGG - chr2_1:11534562-11534581 None:intergenic 55.0%
CCAACCGTACAGACTCCATC+TGG + chr2_1:11534559-11534578 Msa0194950:CDS 55.0%
GCAAGGCCACCTCTACTACA+TGG + chr2_1:11534613-11534632 Msa0194950:CDS 55.0%
TCGTTTGTCCAGAGCCCCTA+TGG + chr2_1:11534637-11534656 Msa0194950:CDS 55.0%
! TTCTGGCTGGGGTCCTTATC+AGG + chr2_1:11534693-11534712 Msa0194950:CDS 55.0%
CATTACCCGGTGAAGGTAGC+TGG - chr2_1:11534882-11534901 None:intergenic 55.0%
TCTGCTTGAAGGACCGACTG+AGG - chr2_1:11534935-11534954 None:intergenic 55.0%
GGAGCAAAAGGAAGCTCCTC+TGG - chr2_1:11535021-11535040 None:intergenic 55.0%
!! TTTCATAATGGGCCCGGCCA+TGG + chr2_1:11536550-11536569 Msa0194950:intron 55.0%
ATATAGCTCCCACCATGGCC+GGG - chr2_1:11536565-11536584 None:intergenic 55.0%
GATATAGCTCCCACCATGGC+CGG - chr2_1:11536566-11536585 None:intergenic 55.0%
! GCCATGGTGGGAGCTATATC+AGG + chr2_1:11536566-11536585 Msa0194950:intron 55.0%
TGCCCCATAAGGTAGGGAGT+CGG + chr2_1:11536854-11536873 Msa0194950:intron 55.0%
CTGACTCAATGCAGTGGGGA+TGG + chr2_1:11537149-11537168 Msa0194950:intron 55.0%
GCGGAAAATAGGGATGCCAG+GGG - chr2_1:11537263-11537282 None:intergenic 55.0%
GTGCGGAAAATAGGGATGCC+AGG - chr2_1:11537265-11537284 None:intergenic 55.0%
CCCACAAAGTAGGGTGCAAC+TGG - chr2_1:11538171-11538190 None:intergenic 55.0%
GGCTTGACTTTGCCAACTGG+TGG + chr2_1:11538321-11538340 Msa0194950:CDS 55.0%
TGAGAAACAGGGCCACCAGT+TGG - chr2_1:11538336-11538355 None:intergenic 55.0%
!! GGATCAGGTTGAGTGGAGCG+AGG - chr2_1:11533425-11533444 None:intergenic 60.0%
GGCCCGGTCCATTGAGAAGA+CGG - chr2_1:11533446-11533465 None:intergenic 60.0%
GTCTTCTCAATGGACCGGGC+CGG + chr2_1:11533445-11533464 Msa0194950:CDS 60.0%
ACCGGGCCGGATTCTCAAAC+CGG + chr2_1:11533458-11533477 Msa0194950:CDS 60.0%
!! ACCGGTTTGAGAATCCGGCC+CGG - chr2_1:11533462-11533481 None:intergenic 60.0%
TGTTGGACAGCCTGTGTGCC+AGG + chr2_1:11533844-11533863 Msa0194950:CDS 60.0%
CCATAGGTCCATAGGGGCTC+TGG - chr2_1:11534648-11534667 None:intergenic 60.0%
CCAGAGCCCCTATGGACCTA+TGG + chr2_1:11534645-11534664 Msa0194950:CDS 60.0%
GGCTGGGGTCCTTATCAGGT+AGG + chr2_1:11534697-11534716 Msa0194950:intron 60.0%
AATGCCGTCCTTAGCCCTGC+AGG + chr2_1:11535087-11535106 Msa0194950:CDS 60.0%
ATGCCGTCCTTAGCCCTGCA+GGG + chr2_1:11535088-11535107 Msa0194950:CDS 60.0%
AAGCCCTGCAGGGCTAAGGA+CGG - chr2_1:11535094-11535113 None:intergenic 60.0%
! GACGTAACGGAAGCCCTGCA+GGG - chr2_1:11535104-11535123 None:intergenic 60.0%
TGCAGGGCTTCCGTTACGTC+CGG + chr2_1:11535104-11535123 Msa0194950:CDS 60.0%
!! ATAATGGGCCCGGCCATGGT+GGG + chr2_1:11536554-11536573 Msa0194950:intron 60.0%
TGCACTCACTACGCACAGCG+TGG + chr2_1:11538057-11538076 Msa0194950:CDS 60.0%
TCATCCTCGTGACCGTGCCG+CGG + chr2_1:11533686-11533705 Msa0194950:CDS 65.0%
ATTACCGCGGCACGGTCACG+AGG - chr2_1:11533693-11533712 None:intergenic 65.0%
ACGGAAGCCCTGCAGGGCTA+AGG - chr2_1:11535098-11535117 None:intergenic 65.0%
! GGACGTAACGGAAGCCCTGC+AGG - chr2_1:11535105-11535124 None:intergenic 65.0%
!! CATAATGGGCCCGGCCATGG+TGG + chr2_1:11536553-11536572 Msa0194950:intron 65.0%
!! AGCTCCATCGCCGGTTCCCC+CGG + chr2_1:11534498-11534517 Msa0194950:CDS 70.0%
GAAACCGGGGGAACCGGCGA+TGG - chr2_1:11534505-11534524 None:intergenic 70.0%
GGGGGAACCGGCGATGGAGC+TGG - chr2_1:11534499-11534518 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11533145 11539121 11533145 ID=Msa0194950;Name=Msa0194950
chr2_1 mRNA 11533145 11539121 11533145 ID=Msa0194950-mRNA-1;Parent=Msa0194950;Name=Msa0194950-mRNA-1;_AED=0.07;_eAED=0.07;_QI=265|1|1|1|1|1|7|687|478
chr2_1 exon 11533145 11533488 11533145 ID=Msa0194950-mRNA-1:exon:5080;Parent=Msa0194950-mRNA-1
chr2_1 exon 11533565 11533707 11533565 ID=Msa0194950-mRNA-1:exon:5081;Parent=Msa0194950-mRNA-1
chr2_1 exon 11533800 11533865 11533800 ID=Msa0194950-mRNA-1:exon:5082;Parent=Msa0194950-mRNA-1
chr2_1 exon 11534142 11534264 11534142 ID=Msa0194950-mRNA-1:exon:5083;Parent=Msa0194950-mRNA-1
chr2_1 exon 11534400 11534714 11534400 ID=Msa0194950-mRNA-1:exon:5084;Parent=Msa0194950-mRNA-1
chr2_1 exon 11534805 11535125 11534805 ID=Msa0194950-mRNA-1:exon:5085;Parent=Msa0194950-mRNA-1
chr2_1 exon 11538045 11539121 11538045 ID=Msa0194950-mRNA-1:exon:5086;Parent=Msa0194950-mRNA-1
chr2_1 five_prime_UTR 11533145 11533409 11533145 ID=Msa0194950-mRNA-1:five_prime_utr;Parent=Msa0194950-mRNA-1
chr2_1 CDS 11533410 11533488 11533410 ID=Msa0194950-mRNA-1:cds;Parent=Msa0194950-mRNA-1
chr2_1 CDS 11533565 11533707 11533565 ID=Msa0194950-mRNA-1:cds;Parent=Msa0194950-mRNA-1
chr2_1 CDS 11533800 11533865 11533800 ID=Msa0194950-mRNA-1:cds;Parent=Msa0194950-mRNA-1
chr2_1 CDS 11534142 11534264 11534142 ID=Msa0194950-mRNA-1:cds;Parent=Msa0194950-mRNA-1
chr2_1 CDS 11534400 11534714 11534400 ID=Msa0194950-mRNA-1:cds;Parent=Msa0194950-mRNA-1
chr2_1 CDS 11534805 11535125 11534805 ID=Msa0194950-mRNA-1:cds;Parent=Msa0194950-mRNA-1
chr2_1 CDS 11538045 11538434 11538045 ID=Msa0194950-mRNA-1:cds;Parent=Msa0194950-mRNA-1
chr2_1 three_prime_UTR 11538435 11539121 11538435 ID=Msa0194950-mRNA-1:three_prime_utr;Parent=Msa0194950-mRNA-1
Gene Sequence

>Msa0194950

ATGGACCACTTTCCTCGCTCCACTCAACCTGATCCGTCTTCTCAATGGACCGGGCCGGATTCTCAAACCGGTTTAGAAGAACCTATGTGGCAATTGGGGTTAGGTGGTGAAGATTCCTATCCACAACGACCTGATGAGGTTGATTGCACTTACTATTTGAGAACTGGTTTTTGTGGCTTTGGTTCTAGGTGTCGGTTCAATCATCCTCGTGACCGTGCCGCGGTTATTGGAGCTGCTTCTAGGACTGTTGGGGAGTATCCTGAACGTGTTGGACAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCATCTTGTAAGTATCATCATCCGAAACAGACAGGAGCCACTGATGCTAGCCCTGTTTCACTAAATTATTATGGATATCCGTTACGTCCGGGTGAAAAGGAATGTTCATATTTTGTGAAAACGGGGCAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCAGTTCCTGCTAGTGTACAAATTCCAGCTCCATCGCCGGTTCCCCCGGTTTCACCTTTACATGTACCAGTACCTTCCCCATTGTATCCAACCGTACAGACTCCATCTGGACCTTCTTCACAACAAATTGGGGTACTGGTCGCAAGGCCACCTCTACTACATGGTTCGTTTGTCCAGAGCCCCTATGGACCTATGGTATTGTCCCCAACCATGGTTCCTTTTTCTGGCTGGGGTCCTTATCAGGCTACTGCAACAAGCCCTGTACTTCCTTCTGGTTCTCCAGCTAATGTTGGCTCCACACAGCTTTATGGGATAACCCAGCTACCTTCACCGGGTAATGCCTATACTGGACCTTATCAACTTTCTGGTTCCTCAGTCGGTCCTTCAAGCAGAAATCAGAACGAGCAATCATTTCCAGCAAGTCCTAATCAACCAGAGTATCATTATTACTCCAAACCAGAGGAGCTTCCTTTTGCTCCATCTTATAGGTATCACAAACCACCAGACATGAGTGCACCAAAAGTGAATGCCGTCCTTAGCCCTGCAGGGCTTCCGTTACGTCCGGGAGCAGCACTCTGCACTCACTACGCACAGCGTGGTATATGCAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATTGCACCACTGAGTTACAGTCCATCTGCCTCTTCCCTGACAGATGTACCAGTTGCACCCTACTTTGTGGGTTCATCCGTTGGTACTCTTGTTCCTTCATCTTCTTCACCAGAGTTGCAGCCAGAACTTACTGCAGGATCCAACAGGGAGTCTGTTCCTTCTAGAATATCGTCATCAGTAAGCACATCAACTGGATCAGTTGGCTTGACTTTGCCAACTGGTGGCCCTGTTTCTCAATCAAGCACTCGAAGTTCTAGTCCTTTAGCACCTGCCAATACCACGACAAGTAGCAATGTTTCTCACCCCTCAAATTAA
Protein sequence

>Msa0194950

MDHFPRSTQPDPSSQWTGPDSQTGLEEPMWQLGLGGEDSYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAAVIGAASRTVGEYPERVGQPVCQYYMRTRSCKFGASCKYHHPKQTGATDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPASVQIPAPSPVPPVSPLHVPVPSPLYPTVQTPSGPSSQQIGVLVARPPLLHGSFVQSPYGPMVLSPTMVPFSGWGPYQATATSPVLPSGSPANVGSTQLYGITQLPSPGNAYTGPYQLSGSSVGPSSRNQNEQSFPASPNQPEYHYYSKPEELPFAPSYRYHKPPDMSAPKVNAVLSPAGLPLRPGAALCTHYAQRGICKFGPACKFDHPIAPLSYSPSASSLTDVPVAPYFVGSSVGTLVPSSSSPELQPELTAGSNRESVPSRISSSVSTSTGSVGLTLPTGGPVSQSSTRSSSPLAPANTTTSSNVSHPSN*