AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0315440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315440 MtrunA17_Chr2g0286151 98.548 482 3 1 1 478 1 482 0.0 944
Msa0315440 MtrunA17_Chr4g0066941 67.012 482 119 6 11 460 18 491 0.0 543
Msa0315440 MtrunA17_Chr1g0195891 49.862 363 148 10 1 349 1 343 8.21e-98 298
Msa0315440 MtrunA17_Chr7g0249221 42.079 404 195 11 26 413 8 388 2.97e-93 289
Msa0315440 MtrunA17_Chr7g0249221 29.193 161 57 3 12 115 190 350 3.46e-12 68.2
Msa0315440 MtrunA17_Chr5g0438891 38.012 342 173 13 40 379 36 340 1.71e-60 203
Msa0315440 MtrunA17_Chr5g0438891 44.578 83 45 1 38 120 76 157 2.87e-18 86.7
Msa0315440 MtrunA17_Chr5g0438891 40.964 83 47 1 33 115 255 335 3.55e-13 71.2
Msa0315440 MtrunA17_Chr3g0116431 33.978 362 167 9 35 375 166 476 1.06e-54 191
Msa0315440 MtrunA17_Chr4g0058011 33.994 353 181 11 36 378 227 537 1.05e-52 186
Msa0315440 MtrunA17_Chr8g0356241 29.268 369 195 14 40 374 138 474 8.62e-30 122
Msa0315440 MtrunA17_Chr8g0356241 35.429 175 70 4 38 181 188 350 6.65e-28 116
Msa0315440 MtrunA17_Chr8g0356241 32.018 228 98 4 3 173 258 485 3.06e-27 114
Msa0315440 MtrunA17_Chr8g0356241 28.877 374 159 18 86 401 138 462 2.32e-16 81.6
Msa0315440 MtrunA17_Chr1g0195901 57.143 77 30 2 378 454 1 74 1.32e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0315440 AT5G18550.1 51.277 470 199 13 11 469 15 465 4.25e-137 403
Msa0315440 AT5G18550.4 53.258 445 178 13 11 444 15 440 1.70e-136 401
Msa0315440 AT3G06410.1 56.391 399 154 8 8 395 12 401 3.02e-132 390
Msa0315440 AT5G18550.3 51.936 439 185 12 38 469 14 433 3.47e-131 387
Msa0315440 AT2G47850.1 50.805 435 196 10 15 449 18 434 5.29e-131 388
Msa0315440 AT2G47850.3 50.805 435 196 10 15 449 18 434 5.29e-131 388
Msa0315440 AT5G18550.2 49.574 470 194 13 11 469 15 452 2.06e-129 383
Msa0315440 AT2G47850.2 46.437 435 189 11 15 449 18 408 5.69e-108 328
Msa0315440 AT3G02830.1 41.406 384 167 10 26 390 18 362 4.40e-87 273
Msa0315440 AT3G02830.2 41.732 381 164 10 29 390 1 342 9.05e-87 271
Msa0315440 AT5G16540.1 41.081 370 148 11 26 386 19 327 8.60e-82 258
Msa0315440 AT5G16540.1 38.144 97 60 0 22 118 222 318 3.34e-15 77.4
Msa0315440 AT5G16540.3 41.417 367 145 11 29 386 1 306 1.31e-81 257
Msa0315440 AT5G16540.3 38.144 97 60 0 22 118 201 297 3.15e-15 77.4
Msa0315440 AT2G47850.4 46.988 332 149 8 124 449 2 312 2.12e-76 243
Msa0315440 AT2G47850.4 41.304 92 54 0 37 128 161 252 1.58e-16 81.3
Msa0315440 AT5G16540.2 39.459 370 147 12 26 386 19 320 1.27e-74 239
Msa0315440 AT5G16540.2 41.237 97 49 1 86 182 240 328 5.44e-15 77.0
Msa0315440 AT5G16540.2 35.294 102 49 2 22 118 222 311 9.36e-14 73.2
Msa0315440 AT5G16540.4 40.303 330 127 11 29 349 1 269 8.15e-65 211
Msa0315440 AT5G63260.1 34.715 386 188 13 20 390 85 421 3.52e-58 198
Msa0315440 AT5G63260.2 33.250 400 191 13 20 390 85 437 2.77e-55 191
Msa0315440 AT3G48440.1 35.632 348 187 11 37 377 104 421 5.65e-54 187
Msa0315440 AT1G04990.1 32.884 371 187 9 21 387 34 346 1.17e-52 183
Msa0315440 AT1G04990.6 32.884 371 187 9 21 387 34 346 1.17e-52 183
Msa0315440 AT1G04990.2 32.884 371 187 9 21 387 34 346 1.17e-52 183
Msa0315440 AT1G04990.5 31.536 371 172 10 21 387 34 326 4.04e-47 167
Msa0315440 AT2G32930.2 31.316 380 206 10 40 411 41 373 4.89e-45 164
Msa0315440 AT2G32930.2 43.038 79 44 1 37 115 82 159 2.41e-15 78.6
Msa0315440 AT2G32930.3 31.316 380 206 10 40 411 14 346 7.06e-45 162
Msa0315440 AT2G32930.3 43.038 79 44 1 37 115 55 132 2.25e-15 78.6
Msa0315440 AT3G12680.1 32.410 361 186 13 40 374 171 499 2.09e-41 155
Msa0315440 AT3G12680.1 42.000 150 59 3 38 162 220 366 4.43e-32 129
Msa0315440 AT3G12680.1 40.476 168 58 5 41 167 338 504 2.61e-29 121
Msa0315440 AT3G12680.1 32.353 204 79 5 37 181 262 465 1.99e-24 106
Msa0315440 AT3G12680.1 41.000 100 45 2 39 124 416 515 2.39e-18 88.2
Msa0315440 AT2G32930.1 31.053 380 203 11 40 411 41 369 1.10e-40 152
Msa0315440 AT1G04990.3 30.405 296 156 7 96 387 16 265 3.77e-31 122
Msa0315440 AT1G04990.3 39.437 71 42 1 46 116 12 81 1.01e-13 72.4
Msa0315440 AT1G04990.3 43.421 76 42 1 88 163 179 253 7.76e-13 69.7
Msa0315440 AT1G04990.4 28.716 296 141 8 96 387 16 245 7.95e-26 107
Msa0315440 AT1G04990.4 42.424 66 37 1 51 116 17 81 1.31e-13 72.0
Msa0315440 AT1G48195.1 46.753 77 40 1 85 161 5 80 3.43e-17 76.6
Msa0315440 AT1G48195.1 42.308 78 45 0 296 373 3 80 2.92e-16 74.3
Msa0315440 AT1G48195.1 35.897 78 50 0 37 114 3 80 2.22e-11 60.5

Find 223 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCTCCACACAGCTTTA+TGG 0.148543 2_4:+11846475 Msa0315440:CDS
ACTGGACCTTATCAACTTTC+TGG 0.159692 2_4:+11846532 Msa0315440:CDS
CCTCCTTGAATAATGATATT+TGG 0.185540 2_4:-11850115 None:intergenic
CTTCACATTGTTATGTTATA+TGG 0.187358 2_4:+11850602 Msa0315440:three_prime_UTR
GGACCTTCTTCACAACAAAT+TGG 0.188676 2_4:+11846205 Msa0315440:CDS
AGGACAAGATCTTGCAAATT+TGG 0.216539 2_4:+11845780 Msa0315440:CDS
CCATCCACATCTCCAATATT+TGG 0.224277 2_4:+11850360 Msa0315440:three_prime_UTR
AATTGCTACCTAATTCAAAA+AGG 0.241903 2_4:-11850480 None:intergenic
ATTCAAGGAGGTCGTCAAAT+AGG 0.248236 2_4:+11850127 Msa0315440:three_prime_UTR
TTCTGGCTGGGGTCCTTATC+AGG 0.252628 2_4:+11846318 Msa0315440:CDS
CTAAGGACGGCATTCACTTT+TGG 0.274159 2_4:-11846703 None:intergenic
AATGGAATTGCAGATTCTTT+AGG 0.278667 2_4:-11850327 None:intergenic
CGAGTGCTTGATTGAGAAAC+AGG 0.284724 2_4:-11849971 None:intergenic
ACCTGTATTTAATATTTATA+GGG 0.285284 2_4:+11850542 Msa0315440:three_prime_UTR
CCATAATAATTTAGTGAAAC+AGG 0.285617 2_4:-11845855 None:intergenic
CTTGGTATTTGAACTTATTA+CGG 0.304251 2_4:+11850673 Msa0315440:three_prime_UTR
AACCTGTATTTAATATTTAT+AGG 0.308915 2_4:+11850541 Msa0315440:three_prime_UTR
GAATGTGGAACTGGGATAAC+TGG 0.314145 2_4:-11850169 None:intergenic
ACAAGCCCTGTACTTCCTTC+TGG 0.315539 2_4:+11846439 Msa0315440:CDS
TTGGCTCCACACAGCTTTAT+GGG 0.316108 2_4:+11846476 Msa0315440:CDS
TAAGGACCCCAGCCAGAAAA+AGG 0.327349 2_4:-11846313 None:intergenic
TCGTTCTGATTTCTGCTTGA+AGG 0.328571 2_4:-11846568 None:intergenic
CCTGTTTCACTAAATTATTA+TGG 0.341570 2_4:+11845855 Msa0315440:CDS
TAATGATACTCTGGTTGATT+AGG 0.346544 2_4:-11846610 None:intergenic
AGGTTATTGGAGCTGCTTCT+AGG 0.346914 2_4:+11845424 Msa0315440:intron
GACCTTCTTCACAACAAATT+GGG 0.350087 2_4:+11846206 Msa0315440:CDS
TGCAGAACCTATGTGGCAAT+TGG 0.353523 2_4:+11845186 Msa0315440:intron
TCTGGTTGATTAGGACTTGC+TGG 0.357396 2_4:-11846601 None:intergenic
GAGCTGCTTCTAGGACTGTT+GGG 0.358371 2_4:+11845433 Msa0315440:CDS
GATTCTCAAACCGGTTTAGA+AGG 0.358762 2_4:+11845095 Msa0315440:CDS
TTCAAGGAGGTCGTCAAATA+GGG 0.365715 2_4:+11850128 Msa0315440:three_prime_UTR
TTTACTGTTGAGAAATAATC+AGG 0.367051 2_4:+11850565 Msa0315440:three_prime_UTR
CAGCGTGGTATATGCAAGTT+TGG 0.367194 2_4:+11849698 Msa0315440:CDS
CCAGTTGCACCCTACTTTGT+GGG 0.372096 2_4:+11849794 Msa0315440:CDS
GAGAGAAAGTGAGGTGTTGT+TGG 0.373095 2_4:-11844946 None:intergenic
GCACAACAGACTCCAAATAT+TGG 0.375865 2_4:-11850372 None:intergenic
GCAGAACCTATGTGGCAATT+GGG 0.384400 2_4:+11845187 Msa0315440:intron
CATTACCCGGTGAAGGTAGC+TGG 0.387837 2_4:-11846504 None:intergenic
ATTGCTACTTGTCGTGGTAT+TGG 0.389271 2_4:-11850017 None:intergenic
AATGAGAGGTTCCGATGAAA+TGG 0.393509 2_4:-11844993 None:intergenic
TGCACTTACTATTTGAGAAC+TGG 0.397141 2_4:+11845256 Msa0315440:CDS
TCTAAACCGGTTTGAGAATC+CGG 0.399891 2_4:-11845092 None:intergenic
ACCAGTTGCACCCTACTTTG+TGG 0.400576 2_4:+11849793 Msa0315440:CDS
AATGCCGTCCTTAGCCCTGC+AGG 0.402972 2_4:+11846712 Msa0315440:CDS
CATTCACATTTCTTAATTTG+AGG 0.403952 2_4:-11850050 None:intergenic
AGCTCCATCGCCGGTTCCCC+CGG 0.406379 2_4:+11846123 Msa0315440:CDS
GTAAGTTCTGGCTGCAACTC+TGG 0.408260 2_4:-11849854 None:intergenic
CCCACAAAGTAGGGTGCAAC+TGG 0.414071 2_4:-11849794 None:intergenic
AGAGAAAGTGAGGTGTTGTT+GGG 0.414360 2_4:-11844945 None:intergenic
GCTAGATCTGAATGTGGAAC+TGG 0.415034 2_4:-11850178 None:intergenic
TCTAAAGCAAGGCGGCTGTA+TGG 0.415167 2_4:-11850298 None:intergenic
TCACCGGGTAATGCCTATAC+TGG 0.417112 2_4:+11846514 Msa0315440:CDS
AACTTACTGCAGGATCCAAC+AGG 0.417918 2_4:+11849870 Msa0315440:CDS
AAAAGGAAGCTCCTCTGGTT+TGG 0.424409 2_4:-11846638 None:intergenic
CCATAGGTCCATAGGGGCTC+TGG 0.431128 2_4:-11846270 None:intergenic
ACCCCAATTTGTTGTGAAGA+AGG 0.431547 2_4:-11846208 None:intergenic
GTGCAACTGGTACATCTGTC+AGG 0.431818 2_4:-11849781 None:intergenic
GTTGGCTTGACTTTGCCAAC+TGG 0.431997 2_4:+11849944 Msa0315440:CDS
TTGGATCCTGCAGTAAGTTC+TGG 0.432849 2_4:-11849866 None:intergenic
TAGGACTTCCAAAACAGAAA+TGG 0.433296 2_4:-11850505 None:intergenic
GGAGCTGCTTCTAGGACTGT+TGG 0.436466 2_4:+11845432 Msa0315440:CDS
AAAACGGGGCAATGCAAGTT+TGG 0.437807 2_4:+11846052 Msa0315440:CDS
GGTACATGTAAAGGTGAAAC+CGG 0.437936 2_4:-11846142 None:intergenic
GGAGCAAAAGGAAGCTCCTC+TGG 0.446002 2_4:-11846643 None:intergenic
CAACCAAATATCATTATTCA+AGG 0.446562 2_4:+11850112 Msa0315440:three_prime_UTR
GAAGATAGATTACTCTTCAA+TGG 0.448038 2_4:+11845019 Msa0315440:exon
CCTATGTGGCAATTGGGGTT+AGG 0.448878 2_4:+11845193 Msa0315440:CDS
TACTTTGTGGGTTCATCCGT+TGG 0.452836 2_4:+11849806 Msa0315440:CDS
GTTCTCATATGAAAGAAGAT+TGG 0.453505 2_4:-11850406 None:intergenic
CTGTAACTCAGTGGTGCAAT+AGG 0.453647 2_4:-11849743 None:intergenic
ACACATGGTCAATGAAAGTC+TGG 0.455737 2_4:-11850436 None:intergenic
ATAAATATTAAATACAGGTT+GGG 0.458655 2_4:-11850538 None:intergenic
TGTTTGTTTACCTTCTAAAC+CGG 0.458948 2_4:-11845105 None:intergenic
TCATCAGTAAGCACATCAAC+TGG 0.458973 2_4:+11849917 Msa0315440:CDS
CAGGTTGGGAAGTATTGAAT+AGG 0.463903 2_4:-11850524 None:intergenic
CAACTTTCTGGTTCCTCAGT+CGG 0.464302 2_4:+11846544 Msa0315440:CDS
GGACGTAACGGAAGCCCTGC+AGG 0.467084 2_4:-11846727 None:intergenic
TTCACAACAAATTGGGGTAC+TGG 0.467303 2_4:+11846213 Msa0315440:CDS
GTGGCTTTGGTTCTAGGTGT+CGG 0.469793 2_4:+11845284 Msa0315440:CDS
ATTTGTACACTAGCAGGAAC+TGG 0.472818 2_4:-11846097 None:intergenic
GGAGAACCAGAAGGAAGTAC+AGG 0.473748 2_4:-11846445 None:intergenic
ACCCTATAAATATTAAATAC+AGG 0.474157 2_4:-11850543 None:intergenic
TCAGTGGCTCCTGTCTGTTT+CGG 0.476235 2_4:-11845825 None:intergenic
TACCTATAAGATGGAGCAAA+AGG 0.476484 2_4:-11846655 None:intergenic
TAAGTGCAATCAACCTCATC+AGG 0.476914 2_4:-11845241 None:intergenic
TTATAATTAACAGGGTGAAA+AGG 0.477063 2_4:+11846012 Msa0315440:intron
CTAAAGCAAGGCGGCTGTAT+GGG 0.477236 2_4:-11850297 None:intergenic
GTGGTATTGGCAGGTGCTAA+AGG 0.477705 2_4:-11850004 None:intergenic
GATCCGTCTTCTCAATGGAC+CGG 0.479108 2_4:+11845068 Msa0315440:CDS
ACTGATGACGATATTCTAGA+AGG 0.479935 2_4:-11849902 None:intergenic
TCGTTTGTCCAGAGCCCCTA+TGG 0.481665 2_4:+11846262 Msa0315440:CDS
GTCTGTACGGTTGGATACAA+TGG 0.485124 2_4:-11846175 None:intergenic
TCTGGTTCTCCAGCTAATGT+TGG 0.486127 2_4:+11846457 Msa0315440:CDS
TCTGTACGGTTGGATACAAT+GGG 0.486783 2_4:-11846174 None:intergenic
ACCCTTCCTTTCCATTTCAT+CGG 0.487503 2_4:+11844982 Msa0315440:five_prime_UTR
ACCGGGCCGGATTCTCAAAC+CGG 0.487708 2_4:+11845086 Msa0315440:CDS
CCAGAGCCCCTATGGACCTA+TGG 0.489000 2_4:+11846270 Msa0315440:CDS
CCTAACCCCAATTGCCACAT+AGG 0.489648 2_4:-11845193 None:intergenic
TATAAATATTAAATACAGGT+TGG 0.489912 2_4:-11850539 None:intergenic
ACAGGCTGTCCAACACGTTC+AGG 0.492536 2_4:-11845462 None:intergenic
TGTGTGGAGCCAACATTAGC+TGG 0.495140 2_4:-11846466 None:intergenic
AACCTGATCCGTCTTCTCAA+TGG 0.496083 2_4:+11845063 Msa0315440:CDS
ACGGAAGCCCTGCAGGGCTA+AGG 0.497525 2_4:-11846720 None:intergenic
CCAACCGTACAGACTCCATC+TGG 0.498384 2_4:+11846184 Msa0315440:CDS
GGACAATACCATAGGTCCAT+AGG 0.499115 2_4:-11846278 None:intergenic
AGAGAGAGACCAATAAAAGA+AGG 0.500751 2_4:+11844770 None:intergenic
GGATACAATGGGGAAGGTAC+TGG 0.505178 2_4:-11846163 None:intergenic
CTTTGATCTTGAATAAAACA+TGG 0.505754 2_4:+11850252 Msa0315440:three_prime_UTR
ATTCACATTTCTTAATTTGA+GGG 0.507428 2_4:-11850049 None:intergenic
CTACTTGTCGTGGTATTGGC+AGG 0.509824 2_4:-11850013 None:intergenic
TGCAGGGCTTCCGTTACGTC+CGG 0.510700 2_4:+11846729 Msa0315440:CDS
GTCCATTGAGAAGACGGATC+AGG 0.511766 2_4:-11845065 None:intergenic
TTGGCTTGACCTACCTGATA+AGG 0.513240 2_4:-11846331 None:intergenic
TTGAAATGCAGTATTATATG+AGG 0.513604 2_4:+11845760 Msa0315440:intron
GACAATACCATAGGTCCATA+GGG 0.514835 2_4:-11846277 None:intergenic
GATAACCCAGCTACCTTCAC+CGG 0.517819 2_4:+11846498 Msa0315440:CDS
GGCTTGACTTTGCCAACTGG+TGG 0.521772 2_4:+11849947 Msa0315440:CDS
TGTTGGACAGCCTGTGTGCC+AGG 0.522566 2_4:+11845470 Msa0315440:CDS
GAAGGTACTGGTACATGTAA+AGG 0.528560 2_4:-11846151 None:intergenic
AAATGGAAAGGAAGGGTGGT+TGG 0.531666 2_4:-11844976 None:intergenic
CCAGATGGAGTCTGTACGGT+TGG 0.533223 2_4:-11846184 None:intergenic
AGCACATCAACTGGATCAGT+TGG 0.533767 2_4:+11849926 Msa0315440:CDS
TTAGGAGTTATTCTAAAGCA+AGG 0.534715 2_4:-11850309 None:intergenic
GAGGAACCAGAAAGTTGATA+AGG 0.535581 2_4:-11846538 None:intergenic
TTTATTCAAGATCAAAGGAA+TGG 0.535890 2_4:-11850246 None:intergenic
TTCCGATGAAATGGAAAGGA+AGG 0.536074 2_4:-11844984 None:intergenic
ATGGGTTGCTAAAGTTCTCA+TGG 0.536241 2_4:-11850279 None:intergenic
ATCCGTCTTCTCAATGGACC+GGG 0.542887 2_4:+11845069 Msa0315440:CDS
CCAAATATTGGAGATGTGGA+TGG 0.543002 2_4:-11850360 None:intergenic
GCTGGAATTTGTACACTAGC+AGG 0.543649 2_4:-11846103 None:intergenic
TTCACATTTCTTAATTTGAG+GGG 0.545538 2_4:-11850048 None:intergenic
TATCATCATCCGAAACAGAC+AGG 0.545794 2_4:+11845816 Msa0315440:CDS
GGATGATCAAATTTGCATGC+AGG 0.545853 2_4:-11849722 None:intergenic
GAAATCATTACCGGACGTAA+CGG 0.546095 2_4:-11846739 None:intergenic
TATATACATACCGGACGTAA+CGG 0.546577 2_4:-11845882 None:intergenic
TGGTACATCTGTCAGGGAAG+AGG 0.547265 2_4:-11849774 None:intergenic
ACGGATGAACCCACAAAGTA+GGG 0.550114 2_4:-11849803 None:intergenic
GACTCCAAATATTGGAGATG+TGG 0.555876 2_4:-11850364 None:intergenic
AGCTGCTTCTAGGACTGTTG+GGG 0.557759 2_4:+11845434 Msa0315440:CDS
GGTTGTAGAGAGAGAAAGTG+AGG 0.560617 2_4:-11844955 None:intergenic
GAGAGAGACCAATAAAAGAA+GGG 0.560652 2_4:+11844771 None:intergenic
TTGGAGTAATAATGATACTC+TGG 0.560717 2_4:-11846619 None:intergenic
CATAATAATTTAGTGAAACA+GGG 0.562802 2_4:-11845854 None:intergenic
CAGAACCTATGTGGCAATTG+GGG 0.564961 2_4:+11845188 Msa0315440:intron
TGACAATCAAAAGCTTGACT+TGG 0.573937 2_4:+11850655 Msa0315440:three_prime_UTR
GGCCCGGTCCATTGAGAAGA+CGG 0.574708 2_4:-11845071 None:intergenic
TTATGGATATCCGTTACGTC+CGG 0.574710 2_4:+11845872 Msa0315440:CDS
TGTAAAATGCAGAACCTATG+TGG 0.575003 2_4:+11845179 Msa0315440:intron
AAGTTGATAAGGTCCAGTAT+AGG 0.575231 2_4:-11846527 None:intergenic
CTCATCAGGTCGTTGTGGAT+AGG 0.577829 2_4:-11845227 None:intergenic
GTTGAGTGGAGCGAGGAAAG+TGG 0.577852 2_4:-11845043 None:intergenic
ATGCCGTCCTTAGCCCTGCA+GGG 0.582917 2_4:+11846713 Msa0315440:CDS
AACGGATGAACCCACAAAGT+AGG 0.583788 2_4:-11849804 None:intergenic
AATCTATCTTCTAGAATGAG+AGG 0.584529 2_4:-11845007 None:intergenic
GTATAGGCATTACCCGGTGA+AGG 0.585426 2_4:-11846511 None:intergenic
TGAAACAGGGCTAGCATCAG+TGG 0.587083 2_4:-11845841 None:intergenic
TTTGGTGCACTCATGTCTGG+TGG 0.589030 2_4:-11846685 None:intergenic
AGAAGGAACAGACTCCCTGT+TGG 0.589389 2_4:-11849885 None:intergenic
AACTCTGGTGAAGAAGATGA+AGG 0.589670 2_4:-11849839 None:intergenic
AGGTCCAGATGGAGTCTGTA+CGG 0.593840 2_4:-11846188 None:intergenic
TGAGAAACAGGGCCACCAGT+TGG 0.594435 2_4:-11849959 None:intergenic
AAGCCCTGCAGGGCTAAGGA+CGG 0.594591 2_4:-11846716 None:intergenic
GTCTTCTCAATGGACCGGGC+CGG 0.595616 2_4:+11845073 Msa0315440:CDS
TTGCAGCCAGAACTTACTGC+AGG 0.595785 2_4:+11849860 Msa0315440:CDS
ACCTTCTTCACAACAAATTG+GGG 0.596480 2_4:+11846207 Msa0315440:CDS
ATGTGGCAATTGGGGTTAGG+TGG 0.598261 2_4:+11845196 Msa0315440:CDS
TCTGTCAGGGAAGAGGCAGA+TGG 0.599348 2_4:-11849767 None:intergenic
ATTACCCGGTGAAGGTAGCT+GGG 0.599486 2_4:-11846503 None:intergenic
AAGAGTTGATTACCGCGGCA+CGG 0.603398 2_4:-11845324 None:intergenic
AGAAACATTGCTACTTGTCG+TGG 0.603866 2_4:-11850023 None:intergenic
AGAGAGACCAATAAAAGAAG+GGG 0.604083 2_4:+11844772 None:intergenic
CTATCCACAACGACCTGATG+AGG 0.604241 2_4:+11845228 Msa0315440:CDS
TCAACCTCATCAGGTCGTTG+TGG 0.604355 2_4:-11845232 None:intergenic
ACAAATTCCAGCTCCATCGC+CGG 0.606383 2_4:+11846114 Msa0315440:CDS
TCTGCTTGAAGGACCGACTG+AGG 0.609373 2_4:-11846557 None:intergenic
TGTTGTGAAGAAGGTCCAGA+TGG 0.611457 2_4:-11846199 None:intergenic
AGAAGACGGATCAGGTTGAG+TGG 0.611535 2_4:-11845057 None:intergenic
GTACATGTAAAGGTGAAACC+GGG 0.613076 2_4:-11846141 None:intergenic
AAATTGGGGTACTGGTCGCA+AGG 0.614330 2_4:+11846221 Msa0315440:CDS
TGCAACTGGTACATCTGTCA+GGG 0.614727 2_4:-11849780 None:intergenic
CTAGATCTGAATGTGGAACT+GGG 0.614781 2_4:-11850177 None:intergenic
AATGTGGAACTGGGATAACT+GGG 0.616887 2_4:-11850168 None:intergenic
TATGGTATTGTCCCCAACCA+TGG 0.619686 2_4:+11846288 Msa0315440:CDS
GCAAGGCCACCTCTACTACA+TGG 0.623985 2_4:+11846238 Msa0315440:CDS
GGTTTGTGATACCTATAAGA+TGG 0.626246 2_4:-11846664 None:intergenic
GACGTAACGGAAGCCCTGCA+GGG 0.628849 2_4:-11846726 None:intergenic
GTGGAAGAGGCGTAAACACA+TGG 0.630245 2_4:-11850451 None:intergenic
ATGGTTGGGGACAATACCAT+AGG 0.634397 2_4:-11846286 None:intergenic
ACCGGTTTGAGAATCCGGCC+CGG 0.634443 2_4:-11845087 None:intergenic
TCATCCTCGTGACCGTGCCG+CGG 0.635356 2_4:+11845312 Msa0315440:CDS
TGAAGGAACAAGAGTACCAA+CGG 0.641917 2_4:-11849822 None:intergenic
GAGGTTCCGATGAAATGGAA+AGG 0.642762 2_4:-11844988 None:intergenic
AACGAACCATGTAGTAGAGG+TGG 0.645568 2_4:-11846244 None:intergenic
TCCGATGAAATGGAAAGGAA+GGG 0.649914 2_4:-11844983 None:intergenic
AAGTGTGTCTATGTCCGCGT+GGG 0.652362 2_4:+11844874 Msa0315440:five_prime_UTR
CCAAATATCATTATTCAAGG+AGG 0.652623 2_4:+11850115 Msa0315440:three_prime_UTR
ACATTAGCTGGAGAACCAGA+AGG 0.656658 2_4:-11846454 None:intergenic
ATAGAAAGAACCTGGCACAC+AGG 0.659872 2_4:-11845480 None:intergenic
ATAACCCAGCTACCTTCACC+GGG 0.661218 2_4:+11846499 Msa0315440:CDS
ATTACCGCGGCACGGTCACG+AGG 0.663314 2_4:-11845316 None:intergenic
GGTCCAGTATAGGCATTACC+CGG 0.665325 2_4:-11846517 None:intergenic
GGATCAGGTTGAGTGGAGCG+AGG 0.669957 2_4:-11845050 None:intergenic
ACAAACGAACCATGTAGTAG+AGG 0.670307 2_4:-11846247 None:intergenic
ACGGTTGGATACAATGGGGA+AGG 0.671841 2_4:-11846169 None:intergenic
GAGAACCAGAAGGAAGTACA+GGG 0.676606 2_4:-11846444 None:intergenic
GAGTGCTTGATTGAGAAACA+GGG 0.682043 2_4:-11849970 None:intergenic
GATGAAATGGAAAGGAAGGG+TGG 0.685039 2_4:-11844980 None:intergenic
GGGGAGTATCCTGAACGTGT+TGG 0.686141 2_4:+11845453 Msa0315440:CDS
GTGGATGGACATGTGCACAA+TGG 0.696923 2_4:-11850345 None:intergenic
ACTTACTGCAGGATCCAACA+GGG 0.697938 2_4:+11849871 Msa0315440:CDS
AAAGTGTGTCTATGTCCGCG+TGG 0.698000 2_4:+11844873 Msa0315440:five_prime_UTR
GGTTATCCCATAAAGCTGTG+TGG 0.703062 2_4:-11846482 None:intergenic
TGCACTCACTACGCACAGCG+TGG 0.705043 2_4:+11849683 Msa0315440:CDS
TACATGTAAAGGTGAAACCG+GGG 0.706635 2_4:-11846140 None:intergenic
AAGTGTGCTAGATCTGAATG+TGG 0.713914 2_4:-11850184 None:intergenic
TCATTATTACTCCAAACCAG+AGG 0.716269 2_4:+11846627 Msa0315440:CDS
GGAGTTATTCTAAAGCAAGG+CGG 0.717033 2_4:-11850306 None:intergenic
GCAGATGGACTGTAACTCAG+TGG 0.717626 2_4:-11849752 None:intergenic
ACAATACCATAGGTCCATAG+GGG 0.724835 2_4:-11846276 None:intergenic
ATAATCAGGAGACTGCAATG+AGG 0.735467 2_4:+11850579 Msa0315440:three_prime_UTR
ACATGTAAAGGTGAAACCGG+GGG 0.747756 2_4:-11846139 None:intergenic
CTGTACGGTTGGATACAATG+GGG 0.782914 2_4:-11846173 None:intergenic
TGAGTCTAGTCTAACCCACG+CGG 0.826945 2_4:-11844888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATATATATACATAC+CGG - chr2_4:11845894-11845913 None:intergenic 10.0%
!! TGATAATTATTATAATTAAC+AGG + chr2_4:11846003-11846022 Msa0315440:intron 10.0%
!! GATAATTATTATAATTAACA+GGG + chr2_4:11846004-11846023 Msa0315440:intron 10.0%
!! TAATCATCATAAAATAAAAA+AGG + chr2_4:11847673-11847692 Msa0315440:intron 10.0%
!!! TTTTCCTTGTTTTTTTTTTT+TGG + chr2_4:11845503-11845522 Msa0315440:intron 15.0%
!! TATGAGTAGTTTAATTAAAT+TGG - chr2_4:11846940-11846959 None:intergenic 15.0%
!!! TTATTTTTTGTGTTCATTTT+GGG + chr2_4:11847051-11847070 Msa0315440:intron 15.0%
!!! TATACAATATATATGCTTTT+TGG + chr2_4:11847886-11847905 Msa0315440:intron 15.0%
!!! ATACAATATATATGCTTTTT+GGG + chr2_4:11847887-11847906 Msa0315440:intron 15.0%
!!! AAAATTGTAACTAACATTTT+TGG - chr2_4:11848236-11848255 None:intergenic 15.0%
!! AAATATAGAGTTTATTTGAT+AGG + chr2_4:11848272-11848291 Msa0315440:intron 15.0%
!!! AATTTTGTTATAGTATTCTT+CGG + chr2_4:11848687-11848706 Msa0315440:intron 15.0%
!! ATCAATAAATTATCTTTAGT+GGG - chr2_4:11848739-11848758 None:intergenic 15.0%
!! AATCAATAAATTATCTTTAG+TGG - chr2_4:11848740-11848759 None:intergenic 15.0%
!! ACTAAAGATAATTTATTGAT+TGG + chr2_4:11848739-11848758 Msa0315440:intron 15.0%
!! ATATGAAAAAGTAAAGAATA+TGG - chr2_4:11849008-11849027 None:intergenic 15.0%
!! ATAAATATTAAATACAGGTT+GGG - chr2_4:11850541-11850560 None:intergenic 15.0%
!! TATAAATATTAAATACAGGT+TGG - chr2_4:11850542-11850561 None:intergenic 15.0%
!! AACCTGTATTTAATATTTAT+AGG + chr2_4:11850541-11850560 Msa0315440:three_prime_UTR 15.0%
!! ACCTGTATTTAATATTTATA+GGG + chr2_4:11850542-11850561 Msa0315440:three_prime_UTR 15.0%
!!! TTGATTGTGTTTTCTTAATT+TGG + chr2_4:11845377-11845396 Msa0315440:intron 20.0%
!! ACTACCAAAAAAAAAAAACA+AGG - chr2_4:11845510-11845529 None:intergenic 20.0%
!! CATAATAATTTAGTGAAACA+GGG - chr2_4:11845857-11845876 None:intergenic 20.0%
!!! TTTTGAATATGGAAATGTTT+TGG + chr2_4:11845965-11845984 Msa0315440:intron 20.0%
!!! ATGTTCATATTTTGTGAAAA+CGG + chr2_4:11846036-11846055 Msa0315440:CDS 20.0%
!! AACAATATAAAAGAAATGCT+TGG - chr2_4:11846353-11846372 None:intergenic 20.0%
!!! TAATAATATTTCTAGGATAG+TGG + chr2_4:11847004-11847023 Msa0315440:intron 20.0%
!!! AATAATATTTCTAGGATAGT+GGG + chr2_4:11847005-11847024 Msa0315440:intron 20.0%
!!! GTTATTTTTTGTGTTCATTT+TGG + chr2_4:11847050-11847069 Msa0315440:intron 20.0%
!! TTATGCATAATTTCATCAAA+TGG - chr2_4:11847118-11847137 None:intergenic 20.0%
!!! AGTATTTTAATCATAGAGTT+GGG + chr2_4:11847152-11847171 Msa0315440:intron 20.0%
!!! ATTAATGTATTGATCATGAA+GGG + chr2_4:11847453-11847472 Msa0315440:intron 20.0%
!! AAAAAAACTTCCATGTATAT+GGG - chr2_4:11847601-11847620 None:intergenic 20.0%
!!! ATATACATGGAAGTTTTTTT+GGG + chr2_4:11847601-11847620 Msa0315440:intron 20.0%
!! CAAAACAGAAAATATTTCAA+GGG - chr2_4:11847650-11847669 None:intergenic 20.0%
!! ACAAAACAGAAAATATTTCA+AGG - chr2_4:11847651-11847670 None:intergenic 20.0%
!!! TACAAGAGAGATTTTTAATA+TGG + chr2_4:11847697-11847716 Msa0315440:intron 20.0%
!!! TTATAGCTATATACTCTTTT+AGG + chr2_4:11847743-11847762 Msa0315440:intron 20.0%
!!! TATAGCTATATACTCTTTTA+GGG + chr2_4:11847744-11847763 Msa0315440:intron 20.0%
!!! ATAATATCTTTTAAGGTTGT+CGG - chr2_4:11847836-11847855 None:intergenic 20.0%
!!! ATGGTGTATAATATCTTTTA+AGG - chr2_4:11847843-11847862 None:intergenic 20.0%
!!! TACAATATATATGCTTTTTG+GGG + chr2_4:11847888-11847907 Msa0315440:intron 20.0%
!! TTAAATTGATCTTATGTACA+AGG + chr2_4:11848031-11848050 Msa0315440:intron 20.0%
!! TAAATTGATCTTATGTACAA+GGG + chr2_4:11848032-11848051 Msa0315440:intron 20.0%
!! TTTATACAGTGAAAAATTGT+TGG - chr2_4:11848133-11848152 None:intergenic 20.0%
!!! TTACAATGTTGATTAAACTT+GGG - chr2_4:11848571-11848590 None:intergenic 20.0%
!!! AAACTTTTTAGACTATTCTT+TGG + chr2_4:11848712-11848731 Msa0315440:intron 20.0%
!! TCAATAAATTATCTTTAGTG+GGG - chr2_4:11848738-11848757 None:intergenic 20.0%
!!! AATTTCCATTTATGCTTTTT+TGG + chr2_4:11848940-11848959 Msa0315440:intron 20.0%
!!! ATGCAATAAGTATGTTATTT+TGG + chr2_4:11849151-11849170 Msa0315440:intron 20.0%
!!! ATTCACATTTCTTAATTTGA+GGG - chr2_4:11850052-11850071 None:intergenic 20.0%
!! GAAGAATTGAGATAAAAAAA+AGG - chr2_4:11850093-11850112 None:intergenic 20.0%
!! ACCCTATAAATATTAAATAC+AGG - chr2_4:11850546-11850565 None:intergenic 20.0%
!!! GTTATATGGTTTGTAATTTT+TGG + chr2_4:11850616-11850635 Msa0315440:three_prime_UTR 20.0%
!!! ATCTGAATGTGTTTTGTTTT+AGG + chr2_4:11845404-11845423 Msa0315440:intron 25.0%
!!! TGTGTTTTGTTTTAGGTTAT+TGG + chr2_4:11845411-11845430 Msa0315440:intron 25.0%
! ACTAAATATTGCGTTCAATT+CGG + chr2_4:11845530-11845549 Msa0315440:intron 25.0%
!!! AAGCAAATATTCATTTTTCC+AGG + chr2_4:11845563-11845582 Msa0315440:intron 25.0%
! TTGAAATGCAGTATTATATG+AGG + chr2_4:11845760-11845779 Msa0315440:intron 25.0%
! CCATAATAATTTAGTGAAAC+AGG - chr2_4:11845858-11845877 None:intergenic 25.0%
! CCTGTTTCACTAAATTATTA+TGG + chr2_4:11845855-11845874 Msa0315440:CDS 25.0%
!!! GCGTTTTGTTTTTTTGAATA+TGG + chr2_4:11845954-11845973 Msa0315440:intron 25.0%
! TTATAATTAACAGGGTGAAA+AGG + chr2_4:11846012-11846031 Msa0315440:intron 25.0%
!! TGTTCATATTTTGTGAAAAC+GGG + chr2_4:11846037-11846056 Msa0315440:CDS 25.0%
! ATATTTCACAACTGAATAAG+AGG - chr2_4:11846790-11846809 None:intergenic 25.0%
!! AAAAAACTTCTTTTTCTACC+AGG - chr2_4:11846841-11846860 None:intergenic 25.0%
!! CAACAAATTACAGTAGTTTT+TGG + chr2_4:11846885-11846904 Msa0315440:intron 25.0%
!! TTGGTGATTAAAATAGCTAT+TGG + chr2_4:11846904-11846923 Msa0315440:intron 25.0%
! TTAAACTACTCATACATAGT+TGG + chr2_4:11846946-11846965 Msa0315440:intron 25.0%
!!! GAGTATTTTAATCATAGAGT+TGG + chr2_4:11847151-11847170 Msa0315440:intron 25.0%
! TAGCATTGTCTAAAAACTTA+AGG - chr2_4:11847337-11847356 None:intergenic 25.0%
!! CATTAATGTATTGATCATGA+AGG + chr2_4:11847452-11847471 Msa0315440:intron 25.0%
! CAGATCTAATTATAATATGC+AGG - chr2_4:11847520-11847539 None:intergenic 25.0%
! GAAATACAAAAACTCACTAT+TGG - chr2_4:11847546-11847565 None:intergenic 25.0%
! CAAAAAAACTTCCATGTATA+TGG - chr2_4:11847602-11847621 None:intergenic 25.0%
!!! CATATACATGGAAGTTTTTT+TGG + chr2_4:11847600-11847619 Msa0315440:intron 25.0%
!! ATAGCTATATACTCTTTTAG+GGG + chr2_4:11847745-11847764 Msa0315440:intron 25.0%
!!! TAATATCTTTTAAGGTTGTC+GGG - chr2_4:11847835-11847854 None:intergenic 25.0%
! AACCTAACAAGCTATTTATT+AGG - chr2_4:11848058-11848077 None:intergenic 25.0%
! AGTTTATTTGATAGGCTTAT+TGG + chr2_4:11848280-11848299 Msa0315440:intron 25.0%
!! CTTACAATGTTGATTAAACT+TGG - chr2_4:11848572-11848591 None:intergenic 25.0%
!!! TGTAAAAGCATAGGTATTTT+AGG + chr2_4:11848629-11848648 Msa0315440:intron 25.0%
! AGCATAAATGGAAATTATGT+TGG - chr2_4:11848936-11848955 None:intergenic 25.0%
!! ATAGACCAAAAAAGCATAAA+TGG - chr2_4:11848948-11848967 None:intergenic 25.0%
!! TCTATCACATAATGTCATTT+AGG + chr2_4:11849111-11849130 Msa0315440:intron 25.0%
!! CAAACCTAATCTAAAATTAC+AGG - chr2_4:11849340-11849359 None:intergenic 25.0%
!!! TCTTTTTAAAAGACACACTT+AGG + chr2_4:11849559-11849578 Msa0315440:intron 25.0%
! AAAGCAGTAGAATAATAGTT+TGG - chr2_4:11849616-11849635 None:intergenic 25.0%
!! TTCACATTTCTTAATTTGAG+GGG - chr2_4:11850051-11850070 None:intergenic 25.0%
!! CATTCACATTTCTTAATTTG+AGG - chr2_4:11850053-11850072 None:intergenic 25.0%
! CAACCAAATATCATTATTCA+AGG + chr2_4:11850112-11850131 Msa0315440:three_prime_UTR 25.0%
! TTTATTCAAGATCAAAGGAA+TGG - chr2_4:11850249-11850268 None:intergenic 25.0%
!!! CATGTTTTATTCAAGATCAA+AGG - chr2_4:11850254-11850273 None:intergenic 25.0%
! CTTTGATCTTGAATAAAACA+TGG + chr2_4:11850252-11850271 Msa0315440:three_prime_UTR 25.0%
! ATTGCTACCTAATTCAAAAA+GGG - chr2_4:11850482-11850501 None:intergenic 25.0%
! AATTGCTACCTAATTCAAAA+AGG - chr2_4:11850483-11850502 None:intergenic 25.0%
! TTTACTGTTGAGAAATAATC+AGG + chr2_4:11850565-11850584 Msa0315440:three_prime_UTR 25.0%
! CTTCACATTGTTATGTTATA+TGG + chr2_4:11850602-11850621 Msa0315440:three_prime_UTR 25.0%
! CTTGGTATTTGAACTTATTA+CGG + chr2_4:11850673-11850692 Msa0315440:three_prime_UTR 25.0%
!! AATCTATCTTCTAGAATGAG+AGG - chr2_4:11845010-11845029 None:intergenic 30.0%
GAAGATAGATTACTCTTCAA+TGG + chr2_4:11845019-11845038 Msa0315440:exon 30.0%
TGTTTGTTTACCTTCTAAAC+CGG - chr2_4:11845108-11845127 None:intergenic 30.0%
!!! TATTTGAGAACTGGTTTTTG+TGG + chr2_4:11845265-11845284 Msa0315440:CDS 30.0%
AAGGAAAAATAGAAAGAACC+TGG - chr2_4:11845491-11845510 None:intergenic 30.0%
!!! CAAACACATACTACTTTTTC+AGG - chr2_4:11845662-11845681 None:intergenic 30.0%
CTGAAAAAGTAGTATGTGTT+TGG + chr2_4:11845660-11845679 Msa0315440:intron 30.0%
! TCTTCATAGTATGTGCATTT+TGG + chr2_4:11845710-11845729 Msa0315440:intron 30.0%
!!! AATATGGAAATGTTTTGGTC+TGG + chr2_4:11845970-11845989 Msa0315440:intron 30.0%
! GTTCATATTTTGTGAAAACG+GGG + chr2_4:11846038-11846057 Msa0315440:CDS 30.0%
TAATGATACTCTGGTTGATT+AGG - chr2_4:11846613-11846632 None:intergenic 30.0%
TTGGAGTAATAATGATACTC+TGG - chr2_4:11846622-11846641 None:intergenic 30.0%
AGTTGTGAAATATATCTCCA+CGG + chr2_4:11846797-11846816 Msa0315440:intron 30.0%
!! ACTACTGTAATTTGTTGAAG+AGG - chr2_4:11846882-11846901 None:intergenic 30.0%
AATTATGCATAAATGCCCAT+TGG + chr2_4:11847126-11847145 Msa0315440:intron 30.0%
ATTATGCATAAATGCCCATT+GGG + chr2_4:11847127-11847146 Msa0315440:intron 30.0%
ATACACTATGATTGTACTCT+GGG + chr2_4:11847208-11847227 Msa0315440:intron 30.0%
TTTCGTCTGCATAATTACTA+GGG + chr2_4:11847423-11847442 Msa0315440:intron 30.0%
ATACTTCTTTCCCATATACA+TGG + chr2_4:11847588-11847607 Msa0315440:intron 30.0%
CCATACAAATATGATCAGTA+TGG - chr2_4:11847862-11847881 None:intergenic 30.0%
CCATACTGATCATATTTGTA+TGG + chr2_4:11847859-11847878 Msa0315440:intron 30.0%
TGAGCTAGTTAATATCTCAA+TGG + chr2_4:11847956-11847975 Msa0315440:intron 30.0%
GAGCTAGTTAATATCTCAAT+GGG + chr2_4:11847957-11847976 Msa0315440:intron 30.0%
AACTTGAATTGAGCATGAAT+GGG - chr2_4:11848012-11848031 None:intergenic 30.0%
AAACTTGAATTGAGCATGAA+TGG - chr2_4:11848013-11848032 None:intergenic 30.0%
!! AAATAGCTTGTTAGGTTCAT+AGG + chr2_4:11848061-11848080 Msa0315440:intron 30.0%
TGCCTACAATAGTTTCATAA+TGG + chr2_4:11848162-11848181 Msa0315440:intron 30.0%
GCCTACAATAGTTTCATAAT+GGG + chr2_4:11848163-11848182 Msa0315440:intron 30.0%
! TTTTGGTGAGTTAAAAAGCT+AGG - chr2_4:11848219-11848238 None:intergenic 30.0%
!!! ACTCAAGTGACATTTTTTCA+AGG - chr2_4:11848322-11848341 None:intergenic 30.0%
CACTTGAGTTTGAATTTGAT+TGG + chr2_4:11848333-11848352 Msa0315440:intron 30.0%
CATATATATTCTCAACGCTT+GGG + chr2_4:11848358-11848377 Msa0315440:intron 30.0%
!! AGAGTGATTAGGTTTTATGA+TGG + chr2_4:11848504-11848523 Msa0315440:intron 30.0%
TTCTTCCAATTTCATCTGTA+TGG - chr2_4:11848530-11848549 None:intergenic 30.0%
AGATCCAATTCTTAAGAACT+TGG + chr2_4:11848828-11848847 Msa0315440:intron 30.0%
TCAACCAAGTTCTTAAGAAT+TGG - chr2_4:11848835-11848854 None:intergenic 30.0%
ATAAGAGTTTAGATCAAGTG+CGG - chr2_4:11848906-11848925 None:intergenic 30.0%
AAGTAAAGAGAATGCAAAAC+TGG - chr2_4:11849068-11849087 None:intergenic 30.0%
!!! GTATGTTATTTTGGTTTGTG+CGG + chr2_4:11849160-11849179 Msa0315440:intron 30.0%
! CCTAATCTAAAATTACAGGA+AGG - chr2_4:11849336-11849355 None:intergenic 30.0%
! CCTTCCTGTAATTTTAGATT+AGG + chr2_4:11849333-11849352 Msa0315440:intron 30.0%
TTCCATATTATAGACCAGAT+TGG + chr2_4:11849369-11849388 Msa0315440:intron 30.0%
TTCATCCATTAGTGTTTAGT+TGG + chr2_4:11849485-11849504 Msa0315440:intron 30.0%
AAAGTCCAACTAAACACTAA+TGG - chr2_4:11849493-11849512 None:intergenic 30.0%
ATTAGTGTTTAGTTGGACTT+TGG + chr2_4:11849492-11849511 Msa0315440:intron 30.0%
!! TCCAATGTTTTTGTTTGATC+AGG + chr2_4:11849649-11849668 Msa0315440:intron 30.0%
!! CCAATGTTTTTGTTTGATCA+GGG + chr2_4:11849650-11849669 Msa0315440:intron 30.0%
CCTCCTTGAATAATGATATT+TGG - chr2_4:11850118-11850137 None:intergenic 30.0%
CCAAATATCATTATTCAAGG+AGG + chr2_4:11850115-11850134 Msa0315440:three_prime_UTR 30.0%
!! TTAGGAGTTATTCTAAAGCA+AGG - chr2_4:11850312-11850331 None:intergenic 30.0%
AATGGAATTGCAGATTCTTT+AGG - chr2_4:11850330-11850349 None:intergenic 30.0%
GTTCTCATATGAAAGAAGAT+TGG - chr2_4:11850409-11850428 None:intergenic 30.0%
! GCAATTTTCCATTTCTGTTT+TGG + chr2_4:11850497-11850516 Msa0315440:three_prime_UTR 30.0%
TGTAAAATGCAGAACCTATG+TGG + chr2_4:11845179-11845198 Msa0315440:intron 35.0%
TGCACTTACTATTTGAGAAC+TGG + chr2_4:11845256-11845275 Msa0315440:CDS 35.0%
! AATGAAAGAGTTGATTACCG+CGG - chr2_4:11845332-11845351 None:intergenic 35.0%
CATGAGTTATTCAATGAACC+TGG - chr2_4:11845584-11845603 None:intergenic 35.0%
AGGACAAGATCTTGCAAATT+TGG + chr2_4:11845780-11845799 Msa0315440:CDS 35.0%
TATATACATACCGGACGTAA+CGG - chr2_4:11845885-11845904 None:intergenic 35.0%
GACCTTCTTCACAACAAATT+GGG + chr2_4:11846206-11846225 Msa0315440:CDS 35.0%
ACCTTCTTCACAACAAATTG+GGG + chr2_4:11846207-11846226 Msa0315440:CDS 35.0%
!! AAGTTGATAAGGTCCAGTAT+AGG - chr2_4:11846530-11846549 None:intergenic 35.0%
TCATTATTACTCCAAACCAG+AGG + chr2_4:11846627-11846646 Msa0315440:CDS 35.0%
! TTCCTTTTGCTCCATCTTAT+AGG + chr2_4:11846653-11846672 Msa0315440:CDS 35.0%
TACCTATAAGATGGAGCAAA+AGG - chr2_4:11846658-11846677 None:intergenic 35.0%
GGTTTGTGATACCTATAAGA+TGG - chr2_4:11846667-11846686 None:intergenic 35.0%
AGTTGAGAGGAAATCATTAC+CGG - chr2_4:11846751-11846770 None:intergenic 35.0%
! TTTTTCTACCAGGTGAAAGA+GGG - chr2_4:11846831-11846850 None:intergenic 35.0%
GATTAAAATAGCTATTGGCG+AGG + chr2_4:11846909-11846928 Msa0315440:intron 35.0%
GATTAAAATACTCGCCCAAT+GGG - chr2_4:11847144-11847163 None:intergenic 35.0%
TGATTAAAATACTCGCCCAA+TGG - chr2_4:11847145-11847164 None:intergenic 35.0%
GATACACTATGATTGTACTC+TGG + chr2_4:11847207-11847226 Msa0315440:intron 35.0%
TACACTATGATTGTACTCTG+GGG + chr2_4:11847209-11847228 Msa0315440:intron 35.0%
CACACTGAAAGATGTTGAAT+AGG - chr2_4:11847253-11847272 None:intergenic 35.0%
CTATTCAACATCTTTCAGTG+TGG + chr2_4:11847251-11847270 Msa0315440:intron 35.0%
AACACAAAGAATCATGATCG+AGG + chr2_4:11847356-11847375 Msa0315440:intron 35.0%
ACACAAAGAATCATGATCGA+GGG + chr2_4:11847357-11847376 Msa0315440:intron 35.0%
GTTTCGTCTGCATAATTACT+AGG + chr2_4:11847422-11847441 Msa0315440:intron 35.0%
! TCACCTTAAGGAGTACATAT+GGG - chr2_4:11847487-11847506 None:intergenic 35.0%
! ATCACCTTAAGGAGTACATA+TGG - chr2_4:11847488-11847507 None:intergenic 35.0%
GAAGTATATGCATGCTGAAA+AGG - chr2_4:11847575-11847594 None:intergenic 35.0%
!! ATACTCTTTTAGGGGTATGA+TGG + chr2_4:11847753-11847772 Msa0315440:intron 35.0%
ATGGTCCTTAAAATGATACC+AGG + chr2_4:11847772-11847791 Msa0315440:intron 35.0%
TGGTCCTTAAAATGATACCA+GGG + chr2_4:11847773-11847792 Msa0315440:intron 35.0%
! CTTTCCCTGGTATCATTTTA+AGG - chr2_4:11847780-11847799 None:intergenic 35.0%
ATAATCCTCAGAATTACCAG+TGG + chr2_4:11847924-11847943 Msa0315440:intron 35.0%
!! GGCCTAATAAATAGCTTGTT+AGG + chr2_4:11848053-11848072 Msa0315440:intron 35.0%
GCCCATTATGAAACTATTGT+AGG - chr2_4:11848167-11848186 None:intergenic 35.0%
GCATATATATTCTCAACGCT+TGG + chr2_4:11848357-11848376 Msa0315440:intron 35.0%
GCAAAACTAACTCTTGGTAT+AGG - chr2_4:11848403-11848422 None:intergenic 35.0%
ATCTATGAGTACCAACTGAA+AGG - chr2_4:11848453-11848472 None:intergenic 35.0%
CAACATTGTAAGAAGTCTTG+AGG + chr2_4:11848580-11848599 Msa0315440:intron 35.0%
ATTGTAAGAAGTCTTGAGGA+CGG + chr2_4:11848584-11848603 Msa0315440:intron 35.0%
!! CTTTGCTGTTGTTTAAGAGT+TGG + chr2_4:11848799-11848818 Msa0315440:intron 35.0%
TAGATCAAGTGCGGAAAATA+GGG - chr2_4:11848897-11848916 None:intergenic 35.0%
TTAGATCAAGTGCGGAAAAT+AGG - chr2_4:11848898-11848917 None:intergenic 35.0%
! CTCTCTTAAACTCGTGATTT+TGG + chr2_4:11848969-11848988 Msa0315440:intron 35.0%
AGAATGCAAAACTGGAAAAG+CGG - chr2_4:11849060-11849079 None:intergenic 35.0%
CATAGGATTCAGCGATAAAA+CGG - chr2_4:11849278-11849297 None:intergenic 35.0%
!!! CTAGTTATGGCCAAGTTTTT+TGG + chr2_4:11849306-11849325 Msa0315440:intron 35.0%
CTCCAATCTGGTCTATAATA+TGG - chr2_4:11849374-11849393 None:intergenic 35.0%
! CTTCCTGATTCTTTTGAATG+TGG + chr2_4:11849396-11849415 Msa0315440:intron 35.0%
! TTTAGTTGGACTTTGGTTCA+AGG + chr2_4:11849499-11849518 Msa0315440:intron 35.0%
CCCTGATCAAACAAAAACAT+TGG - chr2_4:11849653-11849672 None:intergenic 35.0%
! ACTGATGACGATATTCTAGA+AGG - chr2_4:11849905-11849924 None:intergenic 35.0%
!!! GTCGTCAAATAGGGTTTTTT+TGG + chr2_4:11850137-11850156 Msa0315440:three_prime_UTR 35.0%
TAGGACTTCCAAAACAGAAA+TGG - chr2_4:11850508-11850527 None:intergenic 35.0%
TGACAATCAAAAGCTTGACT+TGG + chr2_4:11850655-11850674 Msa0315440:three_prime_UTR 35.0%
!! AGAGAAAGTGAGGTGTTGTT+GGG - chr2_4:11844948-11844967 None:intergenic 40.0%
ACCCTTCCTTTCCATTTCAT+CGG + chr2_4:11844982-11845001 Msa0315440:five_prime_UTR 40.0%
TCCGATGAAATGGAAAGGAA+GGG - chr2_4:11844986-11845005 None:intergenic 40.0%
TTCCGATGAAATGGAAAGGA+AGG - chr2_4:11844987-11845006 None:intergenic 40.0%
AATGAGAGGTTCCGATGAAA+TGG - chr2_4:11844996-11845015 None:intergenic 40.0%
!! TCTAAACCGGTTTGAGAATC+CGG - chr2_4:11845095-11845114 None:intergenic 40.0%
! GATTCTCAAACCGGTTTAGA+AGG + chr2_4:11845095-11845114 Msa0315440:CDS 40.0%
TAAGTGCAATCAACCTCATC+AGG - chr2_4:11845244-11845263 None:intergenic 40.0%
!!! AGAACTGGTTTTTGTGGCTT+TGG + chr2_4:11845271-11845290 Msa0315440:CDS 40.0%
!!! GTTTTTGTGGCTTTGGTTCT+AGG + chr2_4:11845278-11845297 Msa0315440:CDS 40.0%
TATCATCATCCGAAACAGAC+AGG + chr2_4:11845816-11845835 Msa0315440:CDS 40.0%
TTATGGATATCCGTTACGTC+CGG + chr2_4:11845872-11845891 Msa0315440:CDS 40.0%
ATTTGTACACTAGCAGGAAC+TGG - chr2_4:11846100-11846119 None:intergenic 40.0%
TACATGTAAAGGTGAAACCG+GGG - chr2_4:11846143-11846162 None:intergenic 40.0%
GTACATGTAAAGGTGAAACC+GGG - chr2_4:11846144-11846163 None:intergenic 40.0%
GGTACATGTAAAGGTGAAAC+CGG - chr2_4:11846145-11846164 None:intergenic 40.0%
!! GAAGGTACTGGTACATGTAA+AGG - chr2_4:11846154-11846173 None:intergenic 40.0%
TCTGTACGGTTGGATACAAT+GGG - chr2_4:11846177-11846196 None:intergenic 40.0%
GGACCTTCTTCACAACAAAT+TGG + chr2_4:11846205-11846224 Msa0315440:CDS 40.0%
!! ACCCCAATTTGTTGTGAAGA+AGG - chr2_4:11846211-11846230 None:intergenic 40.0%
TTCACAACAAATTGGGGTAC+TGG + chr2_4:11846213-11846232 Msa0315440:CDS 40.0%
ACAAACGAACCATGTAGTAG+AGG - chr2_4:11846250-11846269 None:intergenic 40.0%
ACAATACCATAGGTCCATAG+GGG - chr2_4:11846279-11846298 None:intergenic 40.0%
GACAATACCATAGGTCCATA+GGG - chr2_4:11846280-11846299 None:intergenic 40.0%
AGAAAAAGGAACCATGGTTG+GGG - chr2_4:11846302-11846321 None:intergenic 40.0%
CAGAAAAAGGAACCATGGTT+GGG - chr2_4:11846303-11846322 None:intergenic 40.0%
CTGTTAATCGTTGAGCTCTT+TGG + chr2_4:11846402-11846421 Msa0315440:intron 40.0%
ACTGGACCTTATCAACTTTC+TGG + chr2_4:11846532-11846551 Msa0315440:CDS 40.0%
!! GAGGAACCAGAAAGTTGATA+AGG - chr2_4:11846541-11846560 None:intergenic 40.0%
TCGTTCTGATTTCTGCTTGA+AGG - chr2_4:11846571-11846590 None:intergenic 40.0%
GAAATCATTACCGGACGTAA+CGG - chr2_4:11846742-11846761 None:intergenic 40.0%
CAGAGTACAAAGAAGTTGAG+AGG - chr2_4:11846764-11846783 None:intergenic 40.0%
CTCTCAACTTCTTTGTACTC+TGG + chr2_4:11846762-11846781 Msa0315440:intron 40.0%
! CTTTTTCTACCAGGTGAAAG+AGG - chr2_4:11846832-11846851 None:intergenic 40.0%
TTCCCCATATGTACTCCTTA+AGG + chr2_4:11847481-11847500 Msa0315440:intron 40.0%
! CACCTTAAGGAGTACATATG+GGG - chr2_4:11847486-11847505 None:intergenic 40.0%
GGACACAAGAAATCACCTTA+AGG - chr2_4:11847499-11847518 None:intergenic 40.0%
ATAGCTATACACTCTTTCCC+TGG - chr2_4:11847793-11847812 None:intergenic 40.0%
TAGCTCAATTTGAATGCCAC+TGG - chr2_4:11847943-11847962 None:intergenic 40.0%
!! CAATAGTTTCATAATGGGCC+CGG + chr2_4:11848168-11848187 Msa0315440:intron 40.0%
TCGCATGCAAAACTAACTCT+TGG - chr2_4:11848409-11848428 None:intergenic 40.0%
!! TAGTTTTGCATGCGACTTAG+TGG + chr2_4:11848414-11848433 Msa0315440:intron 40.0%
ATGCGACTTAGTGGTTGTTT+GGG + chr2_4:11848423-11848442 Msa0315440:intron 40.0%
ATAGATGTTCATGCCCCATA+AGG + chr2_4:11848467-11848486 Msa0315440:intron 40.0%
GATGGCCATACAGATGAAAT+TGG + chr2_4:11848522-11848541 Msa0315440:intron 40.0%
TTGTAAGAAGTCTTGAGGAC+GGG + chr2_4:11848585-11848604 Msa0315440:intron 40.0%
! GGCAGTACTTGTAAAAGCAT+AGG + chr2_4:11848620-11848639 Msa0315440:intron 40.0%
CATAACTAGCATGGGAACAT+AGG - chr2_4:11849295-11849314 None:intergenic 40.0%
CTATGTTCCCATGCTAGTTA+TGG + chr2_4:11849293-11849312 Msa0315440:intron 40.0%
AACTTGGCCATAACTAGCAT+GGG - chr2_4:11849303-11849322 None:intergenic 40.0%
AAACTTGGCCATAACTAGCA+TGG - chr2_4:11849304-11849323 None:intergenic 40.0%
GGAAGGACATCCAAAAAACT+TGG - chr2_4:11849319-11849338 None:intergenic 40.0%
CCACCACATTCAAAAGAATC+AGG - chr2_4:11849402-11849421 None:intergenic 40.0%
! CCTGATTCTTTTGAATGTGG+TGG + chr2_4:11849399-11849418 Msa0315440:intron 40.0%
GGATGATCAAATTTGCATGC+AGG - chr2_4:11849725-11849744 None:intergenic 40.0%
!! TGAAGGAACAAGAGTACCAA+CGG - chr2_4:11849825-11849844 None:intergenic 40.0%
AACTCTGGTGAAGAAGATGA+AGG - chr2_4:11849842-11849861 None:intergenic 40.0%
TCATCAGTAAGCACATCAAC+TGG + chr2_4:11849917-11849936 Msa0315440:CDS 40.0%
GAGTGCTTGATTGAGAAACA+GGG - chr2_4:11849973-11849992 None:intergenic 40.0%
! ATTGCTACTTGTCGTGGTAT+TGG - chr2_4:11850020-11850039 None:intergenic 40.0%
! AGAAACATTGCTACTTGTCG+TGG - chr2_4:11850026-11850045 None:intergenic 40.0%
ATTCAAGGAGGTCGTCAAAT+AGG + chr2_4:11850127-11850146 Msa0315440:three_prime_UTR 40.0%
TTCAAGGAGGTCGTCAAATA+GGG + chr2_4:11850128-11850147 Msa0315440:three_prime_UTR 40.0%
AATGTGGAACTGGGATAACT+GGG - chr2_4:11850171-11850190 None:intergenic 40.0%
CTAGATCTGAATGTGGAACT+GGG - chr2_4:11850180-11850199 None:intergenic 40.0%
AAGTGTGCTAGATCTGAATG+TGG - chr2_4:11850187-11850206 None:intergenic 40.0%
! ATGGGTTGCTAAAGTTCTCA+TGG - chr2_4:11850282-11850301 None:intergenic 40.0%
!! GGAGTTATTCTAAAGCAAGG+CGG - chr2_4:11850309-11850328 None:intergenic 40.0%
CCAAATATTGGAGATGTGGA+TGG - chr2_4:11850363-11850382 None:intergenic 40.0%
CCATCCACATCTCCAATATT+TGG + chr2_4:11850360-11850379 Msa0315440:three_prime_UTR 40.0%
GACTCCAAATATTGGAGATG+TGG - chr2_4:11850367-11850386 None:intergenic 40.0%
GCACAACAGACTCCAAATAT+TGG - chr2_4:11850375-11850394 None:intergenic 40.0%
ACACATGGTCAATGAAAGTC+TGG - chr2_4:11850439-11850458 None:intergenic 40.0%
TAATTCAAAAAGGGCTCAGG+TGG - chr2_4:11850473-11850492 None:intergenic 40.0%
! ACCTGAGCCCTTTTTGAATT+AGG + chr2_4:11850472-11850491 Msa0315440:three_prime_UTR 40.0%
ACCTAATTCAAAAAGGGCTC+AGG - chr2_4:11850476-11850495 None:intergenic 40.0%
!! CAGGTTGGGAAGTATTGAAT+AGG - chr2_4:11850527-11850546 None:intergenic 40.0%
ATAATCAGGAGACTGCAATG+AGG + chr2_4:11850579-11850598 Msa0315440:three_prime_UTR 40.0%
!! GAGAGAAAGTGAGGTGTTGT+TGG - chr2_4:11844949-11844968 None:intergenic 45.0%
GGTTGTAGAGAGAGAAAGTG+AGG - chr2_4:11844958-11844977 None:intergenic 45.0%
AAATGGAAAGGAAGGGTGGT+TGG - chr2_4:11844979-11844998 None:intergenic 45.0%
GATGAAATGGAAAGGAAGGG+TGG - chr2_4:11844983-11845002 None:intergenic 45.0%
GAGGTTCCGATGAAATGGAA+AGG - chr2_4:11844991-11845010 None:intergenic 45.0%
AACCTGATCCGTCTTCTCAA+TGG + chr2_4:11845063-11845082 Msa0315440:CDS 45.0%
TGCAGAACCTATGTGGCAAT+TGG + chr2_4:11845186-11845205 Msa0315440:intron 45.0%
GCAGAACCTATGTGGCAATT+GGG + chr2_4:11845187-11845206 Msa0315440:intron 45.0%
CAGAACCTATGTGGCAATTG+GGG + chr2_4:11845188-11845207 Msa0315440:intron 45.0%
AGGTTATTGGAGCTGCTTCT+AGG + chr2_4:11845424-11845443 Msa0315440:intron 45.0%
ATAGAAAGAACCTGGCACAC+AGG - chr2_4:11845483-11845502 None:intergenic 45.0%
AAAACGGGGCAATGCAAGTT+TGG + chr2_4:11846052-11846071 Msa0315440:CDS 45.0%
GCTGGAATTTGTACACTAGC+AGG - chr2_4:11846106-11846125 None:intergenic 45.0%
ACATGTAAAGGTGAAACCGG+GGG - chr2_4:11846142-11846161 None:intergenic 45.0%
CTGTACGGTTGGATACAATG+GGG - chr2_4:11846176-11846195 None:intergenic 45.0%
GTCTGTACGGTTGGATACAA+TGG - chr2_4:11846178-11846197 None:intergenic 45.0%
TGTTGTGAAGAAGGTCCAGA+TGG - chr2_4:11846202-11846221 None:intergenic 45.0%
AACGAACCATGTAGTAGAGG+TGG - chr2_4:11846247-11846266 None:intergenic 45.0%
GGACAATACCATAGGTCCAT+AGG - chr2_4:11846281-11846300 None:intergenic 45.0%
ATGGTTGGGGACAATACCAT+AGG - chr2_4:11846289-11846308 None:intergenic 45.0%
TATGGTATTGTCCCCAACCA+TGG + chr2_4:11846288-11846307 Msa0315440:CDS 45.0%
CCAGAAAAAGGAACCATGGT+TGG - chr2_4:11846304-11846323 None:intergenic 45.0%
! CCAACCATGGTTCCTTTTTC+TGG + chr2_4:11846301-11846320 Msa0315440:CDS 45.0%
!!! CATGGTTCCTTTTTCTGGCT+GGG + chr2_4:11846306-11846325 Msa0315440:CDS 45.0%
!!! ATGGTTCCTTTTTCTGGCTG+GGG + chr2_4:11846307-11846326 Msa0315440:CDS 45.0%
! TTGGCTTGACCTACCTGATA+AGG - chr2_4:11846334-11846353 None:intergenic 45.0%
! ATCGTTGAGCTCTTTGGTTC+AGG + chr2_4:11846408-11846427 Msa0315440:intron 45.0%
! GAGAACCAGAAGGAAGTACA+GGG - chr2_4:11846447-11846466 None:intergenic 45.0%
ACATTAGCTGGAGAACCAGA+AGG - chr2_4:11846457-11846476 None:intergenic 45.0%
!! TCTGGTTCTCCAGCTAATGT+TGG + chr2_4:11846457-11846476 Msa0315440:CDS 45.0%
! TTGGCTCCACACAGCTTTAT+GGG + chr2_4:11846476-11846495 Msa0315440:CDS 45.0%
GGTTATCCCATAAAGCTGTG+TGG - chr2_4:11846485-11846504 None:intergenic 45.0%
!! CAACTTTCTGGTTCCTCAGT+CGG + chr2_4:11846544-11846563 Msa0315440:CDS 45.0%
TCTGGTTGATTAGGACTTGC+TGG - chr2_4:11846604-11846623 None:intergenic 45.0%
AAAAGGAAGCTCCTCTGGTT+TGG - chr2_4:11846641-11846660 None:intergenic 45.0%
!! ACTTTTGGTGCACTCATGTC+TGG - chr2_4:11846691-11846710 None:intergenic 45.0%
! CTAAGGACGGCATTCACTTT+TGG - chr2_4:11846706-11846725 None:intergenic 45.0%
TTCATCTTCCCTCTTTCACC+TGG + chr2_4:11846820-11846839 Msa0315440:intron 45.0%
ATATGTTCTCTGCCAGAGCA+GGG + chr2_4:11847274-11847293 Msa0315440:intron 45.0%
GAATGCCACTGGTAATTCTG+AGG - chr2_4:11847932-11847951 None:intergenic 45.0%
GATAGGCTTATTGGACTGAG+TGG + chr2_4:11848289-11848308 Msa0315440:intron 45.0%
CATGCGACTTAGTGGTTGTT+TGG + chr2_4:11848422-11848441 Msa0315440:intron 45.0%
TGCGACTTAGTGGTTGTTTG+GGG + chr2_4:11848424-11848443 Msa0315440:intron 45.0%
! GTTTGGGGTAACCTTTCAGT+TGG + chr2_4:11848439-11848458 Msa0315440:intron 45.0%
ATGTTCATGCCCCATAAGGT+AGG + chr2_4:11848471-11848490 Msa0315440:intron 45.0%
TGTTCATGCCCCATAAGGTA+GGG + chr2_4:11848472-11848491 Msa0315440:intron 45.0%
!! TGTTGCTGACTCAATGCAGT+GGG + chr2_4:11848768-11848787 Msa0315440:intron 45.0%
CCAGGGGAGATGCATATTTA+GGG - chr2_4:11848871-11848890 None:intergenic 45.0%
CAGCGATAAAACGGATGACA+GGG - chr2_4:11849269-11849288 None:intergenic 45.0%
TCAGCGATAAAACGGATGAC+AGG - chr2_4:11849270-11849289 None:intergenic 45.0%
!! AATCAGGAAGCACTCCAATC+TGG - chr2_4:11849386-11849405 None:intergenic 45.0%
AGACAGCAATAACAGCTGAG+TGG - chr2_4:11849462-11849481 None:intergenic 45.0%
CAGCGTGGTATATGCAAGTT+TGG + chr2_4:11849698-11849717 Msa0315440:CDS 45.0%
CTGTAACTCAGTGGTGCAAT+AGG - chr2_4:11849746-11849765 None:intergenic 45.0%
ACGGATGAACCCACAAAGTA+GGG - chr2_4:11849806-11849825 None:intergenic 45.0%
AACGGATGAACCCACAAAGT+AGG - chr2_4:11849807-11849826 None:intergenic 45.0%
TACTTTGTGGGTTCATCCGT+TGG + chr2_4:11849806-11849825 Msa0315440:CDS 45.0%
TTGGATCCTGCAGTAAGTTC+TGG - chr2_4:11849869-11849888 None:intergenic 45.0%
AACTTACTGCAGGATCCAAC+AGG + chr2_4:11849870-11849889 Msa0315440:CDS 45.0%
ACTTACTGCAGGATCCAACA+GGG + chr2_4:11849871-11849890 Msa0315440:CDS 45.0%
AGCACATCAACTGGATCAGT+TGG + chr2_4:11849926-11849945 Msa0315440:CDS 45.0%
CGAGTGCTTGATTGAGAAAC+AGG - chr2_4:11849974-11849993 None:intergenic 45.0%
GAATGTGGAACTGGGATAAC+TGG - chr2_4:11850172-11850191 None:intergenic 45.0%
GCTAGATCTGAATGTGGAAC+TGG - chr2_4:11850181-11850200 None:intergenic 45.0%
!! ATTATTATAATAATATTTCT+AGG + chr2_4:11846997-11847016 Msa0315440:intron 5.0%
AAAGTGTGTCTATGTCCGCG+TGG + chr2_4:11844873-11844892 Msa0315440:five_prime_UTR 50.0%
AAGTGTGTCTATGTCCGCGT+GGG + chr2_4:11844874-11844893 Msa0315440:five_prime_UTR 50.0%
TGAGTCTAGTCTAACCCACG+CGG - chr2_4:11844891-11844910 None:intergenic 50.0%
!! AGAAGACGGATCAGGTTGAG+TGG - chr2_4:11845060-11845079 None:intergenic 50.0%
GTCCATTGAGAAGACGGATC+AGG - chr2_4:11845068-11845087 None:intergenic 50.0%
GATCCGTCTTCTCAATGGAC+CGG + chr2_4:11845068-11845087 Msa0315440:CDS 50.0%
ATCCGTCTTCTCAATGGACC+GGG + chr2_4:11845069-11845088 Msa0315440:CDS 50.0%
CCTAACCCCAATTGCCACAT+AGG - chr2_4:11845196-11845215 None:intergenic 50.0%
CCTATGTGGCAATTGGGGTT+AGG + chr2_4:11845193-11845212 Msa0315440:CDS 50.0%
ATGTGGCAATTGGGGTTAGG+TGG + chr2_4:11845196-11845215 Msa0315440:CDS 50.0%
CTCATCAGGTCGTTGTGGAT+AGG - chr2_4:11845230-11845249 None:intergenic 50.0%
CTATCCACAACGACCTGATG+AGG + chr2_4:11845228-11845247 Msa0315440:CDS 50.0%
TCAACCTCATCAGGTCGTTG+TGG - chr2_4:11845235-11845254 None:intergenic 50.0%
!! GTGGCTTTGGTTCTAGGTGT+CGG + chr2_4:11845284-11845303 Msa0315440:CDS 50.0%
! AAGAGTTGATTACCGCGGCA+CGG - chr2_4:11845327-11845346 None:intergenic 50.0%
!! GAGCTGCTTCTAGGACTGTT+GGG + chr2_4:11845433-11845452 Msa0315440:CDS 50.0%
!! AGCTGCTTCTAGGACTGTTG+GGG + chr2_4:11845434-11845453 Msa0315440:CDS 50.0%
TCAGTGGCTCCTGTCTGTTT+CGG - chr2_4:11845828-11845847 None:intergenic 50.0%
! TGAAACAGGGCTAGCATCAG+TGG - chr2_4:11845844-11845863 None:intergenic 50.0%
ACAAATTCCAGCTCCATCGC+CGG + chr2_4:11846114-11846133 Msa0315440:CDS 50.0%
! GGATACAATGGGGAAGGTAC+TGG - chr2_4:11846166-11846185 None:intergenic 50.0%
ACGGTTGGATACAATGGGGA+AGG - chr2_4:11846172-11846191 None:intergenic 50.0%
AGGTCCAGATGGAGTCTGTA+CGG - chr2_4:11846191-11846210 None:intergenic 50.0%
!! AAATTGGGGTACTGGTCGCA+AGG + chr2_4:11846221-11846240 Msa0315440:CDS 50.0%
CCAGCCAGAAAAAGGAACCA+TGG - chr2_4:11846308-11846327 None:intergenic 50.0%
!! CCATGGTTCCTTTTTCTGGC+TGG + chr2_4:11846305-11846324 Msa0315440:CDS 50.0%
TAAGGACCCCAGCCAGAAAA+AGG - chr2_4:11846316-11846335 None:intergenic 50.0%
ACAAGCCCTGTACTTCCTTC+TGG + chr2_4:11846439-11846458 Msa0315440:CDS 50.0%
! GGAGAACCAGAAGGAAGTAC+AGG - chr2_4:11846448-11846467 None:intergenic 50.0%
TGTGTGGAGCCAACATTAGC+TGG - chr2_4:11846469-11846488 None:intergenic 50.0%
! GTTGGCTCCACACAGCTTTA+TGG + chr2_4:11846475-11846494 Msa0315440:CDS 50.0%
GATAACCCAGCTACCTTCAC+CGG + chr2_4:11846498-11846517 Msa0315440:CDS 50.0%
ATAACCCAGCTACCTTCACC+GGG + chr2_4:11846499-11846518 Msa0315440:CDS 50.0%
ATTACCCGGTGAAGGTAGCT+GGG - chr2_4:11846506-11846525 None:intergenic 50.0%
GTATAGGCATTACCCGGTGA+AGG - chr2_4:11846514-11846533 None:intergenic 50.0%
TCACCGGGTAATGCCTATAC+TGG + chr2_4:11846514-11846533 Msa0315440:CDS 50.0%
GGTCCAGTATAGGCATTACC+CGG - chr2_4:11846520-11846539 None:intergenic 50.0%
! TTTGGTGCACTCATGTCTGG+TGG - chr2_4:11846688-11846707 None:intergenic 50.0%
GAAAGAGGGAAGATGAACCG+TGG - chr2_4:11846817-11846836 None:intergenic 50.0%
AGCACGAGCTCTATGAACAG+TGG - chr2_4:11846974-11846993 None:intergenic 50.0%
CTGGGGAAGTTCTGTCTGTA+AGG + chr2_4:11847226-11847245 Msa0315440:intron 50.0%
GATATGTTCTCTGCCAGAGC+AGG + chr2_4:11847273-11847292 Msa0315440:intron 50.0%
GTACACACTATTCCCTGCTC+TGG - chr2_4:11847289-11847308 None:intergenic 50.0%
ACCTGATATAGCTCCCACCA+TGG - chr2_4:11848194-11848213 None:intergenic 50.0%
TCAACGCTTGGGTTTGAGCT+TGG + chr2_4:11848369-11848388 Msa0315440:intron 50.0%
!! TACCGACTCCCTACCTTATG+GGG - chr2_4:11848483-11848502 None:intergenic 50.0%
!! CTACCGACTCCCTACCTTAT+GGG - chr2_4:11848484-11848503 None:intergenic 50.0%
!! TCTACCGACTCCCTACCTTA+TGG - chr2_4:11848485-11848504 None:intergenic 50.0%
GGAGTCGGTAGAGAGTGATT+AGG + chr2_4:11848493-11848512 Msa0315440:intron 50.0%
GAGGACGGGTGTAACATTTC+AGG + chr2_4:11848599-11848618 Msa0315440:intron 50.0%
GCATTGAGTCAGCAACACAG+TGG - chr2_4:11848765-11848784 None:intergenic 50.0%
!! GTGTTGCTGACTCAATGCAG+TGG + chr2_4:11848767-11848786 Msa0315440:intron 50.0%
!! GTTGCTGACTCAATGCAGTG+GGG + chr2_4:11848769-11848788 Msa0315440:intron 50.0%
CCCTAAATATGCATCTCCCC+TGG + chr2_4:11848868-11848887 Msa0315440:intron 50.0%
GCCAGGGGAGATGCATATTT+AGG - chr2_4:11848872-11848891 None:intergenic 50.0%
TGCGGAAAATAGGGATGCCA+GGG - chr2_4:11848888-11848907 None:intergenic 50.0%
!! GCAGATGGACTGTAACTCAG+TGG - chr2_4:11849755-11849774 None:intergenic 50.0%
GTGCAACTGGTACATCTGTC+AGG - chr2_4:11849784-11849803 None:intergenic 50.0%
ACCAGTTGCACCCTACTTTG+TGG + chr2_4:11849793-11849812 Msa0315440:CDS 50.0%
CCAGTTGCACCCTACTTTGT+GGG + chr2_4:11849794-11849813 Msa0315440:CDS 50.0%
! GTAAGTTCTGGCTGCAACTC+TGG - chr2_4:11849857-11849876 None:intergenic 50.0%
TTGCAGCCAGAACTTACTGC+AGG + chr2_4:11849860-11849879 Msa0315440:CDS 50.0%
AGAAGGAACAGACTCCCTGT+TGG - chr2_4:11849888-11849907 None:intergenic 50.0%
!! GTTGGCTTGACTTTGCCAAC+TGG + chr2_4:11849944-11849963 Msa0315440:CDS 50.0%
!! GTGGTATTGGCAGGTGCTAA+AGG - chr2_4:11850007-11850026 None:intergenic 50.0%
!! CTACTTGTCGTGGTATTGGC+AGG - chr2_4:11850016-11850035 None:intergenic 50.0%
CTAAAGCAAGGCGGCTGTAT+GGG - chr2_4:11850300-11850319 None:intergenic 50.0%
! TCTAAAGCAAGGCGGCTGTA+TGG - chr2_4:11850301-11850320 None:intergenic 50.0%
GTGGATGGACATGTGCACAA+TGG - chr2_4:11850348-11850367 None:intergenic 50.0%
! GTGGAAGAGGCGTAAACACA+TGG - chr2_4:11850454-11850473 None:intergenic 50.0%
AAAAAGGGCTCAGGTGGAAG+AGG - chr2_4:11850467-11850486 None:intergenic 50.0%
GTTGAGTGGAGCGAGGAAAG+TGG - chr2_4:11845046-11845065 None:intergenic 55.0%
!! GGAGCTGCTTCTAGGACTGT+TGG + chr2_4:11845432-11845451 Msa0315440:CDS 55.0%
!! GGGGAGTATCCTGAACGTGT+TGG + chr2_4:11845453-11845472 Msa0315440:CDS 55.0%
ACAGGCTGTCCAACACGTTC+AGG - chr2_4:11845465-11845484 None:intergenic 55.0%
AAAGGTGAAACCGGGGGAAC+CGG - chr2_4:11846136-11846155 None:intergenic 55.0%
CCAGATGGAGTCTGTACGGT+TGG - chr2_4:11846187-11846206 None:intergenic 55.0%
CCAACCGTACAGACTCCATC+TGG + chr2_4:11846184-11846203 Msa0315440:CDS 55.0%
GCAAGGCCACCTCTACTACA+TGG + chr2_4:11846238-11846257 Msa0315440:CDS 55.0%
TCGTTTGTCCAGAGCCCCTA+TGG + chr2_4:11846262-11846281 Msa0315440:CDS 55.0%
! TTCTGGCTGGGGTCCTTATC+AGG + chr2_4:11846318-11846337 Msa0315440:CDS 55.0%
CATTACCCGGTGAAGGTAGC+TGG - chr2_4:11846507-11846526 None:intergenic 55.0%
TCTGCTTGAAGGACCGACTG+AGG - chr2_4:11846560-11846579 None:intergenic 55.0%
GGAGCAAAAGGAAGCTCCTC+TGG - chr2_4:11846646-11846665 None:intergenic 55.0%
!! TTTCATAATGGGCCCGGCCA+TGG + chr2_4:11848174-11848193 Msa0315440:intron 55.0%
ATATAGCTCCCACCATGGCC+GGG - chr2_4:11848189-11848208 None:intergenic 55.0%
GATATAGCTCCCACCATGGC+CGG - chr2_4:11848190-11848209 None:intergenic 55.0%
! GCCATGGTGGGAGCTATATC+AGG + chr2_4:11848190-11848209 Msa0315440:intron 55.0%
TGCCCCATAAGGTAGGGAGT+CGG + chr2_4:11848478-11848497 Msa0315440:intron 55.0%
CTGACTCAATGCAGTGGGGA+TGG + chr2_4:11848773-11848792 Msa0315440:intron 55.0%
GCGGAAAATAGGGATGCCAG+GGG - chr2_4:11848887-11848906 None:intergenic 55.0%
GTGCGGAAAATAGGGATGCC+AGG - chr2_4:11848889-11848908 None:intergenic 55.0%
CCCACAAAGTAGGGTGCAAC+TGG - chr2_4:11849797-11849816 None:intergenic 55.0%
GGCTTGACTTTGCCAACTGG+TGG + chr2_4:11849947-11849966 Msa0315440:CDS 55.0%
TGAGAAACAGGGCCACCAGT+TGG - chr2_4:11849962-11849981 None:intergenic 55.0%
!! GGATCAGGTTGAGTGGAGCG+AGG - chr2_4:11845053-11845072 None:intergenic 60.0%
GGCCCGGTCCATTGAGAAGA+CGG - chr2_4:11845074-11845093 None:intergenic 60.0%
GTCTTCTCAATGGACCGGGC+CGG + chr2_4:11845073-11845092 Msa0315440:CDS 60.0%
ACCGGGCCGGATTCTCAAAC+CGG + chr2_4:11845086-11845105 Msa0315440:CDS 60.0%
!! ACCGGTTTGAGAATCCGGCC+CGG - chr2_4:11845090-11845109 None:intergenic 60.0%
TGTTGGACAGCCTGTGTGCC+AGG + chr2_4:11845470-11845489 Msa0315440:CDS 60.0%
CCATAGGTCCATAGGGGCTC+TGG - chr2_4:11846273-11846292 None:intergenic 60.0%
CCAGAGCCCCTATGGACCTA+TGG + chr2_4:11846270-11846289 Msa0315440:CDS 60.0%
GGCTGGGGTCCTTATCAGGT+AGG + chr2_4:11846322-11846341 Msa0315440:intron 60.0%
AATGCCGTCCTTAGCCCTGC+AGG + chr2_4:11846712-11846731 Msa0315440:CDS 60.0%
ATGCCGTCCTTAGCCCTGCA+GGG + chr2_4:11846713-11846732 Msa0315440:CDS 60.0%
AAGCCCTGCAGGGCTAAGGA+CGG - chr2_4:11846719-11846738 None:intergenic 60.0%
! GACGTAACGGAAGCCCTGCA+GGG - chr2_4:11846729-11846748 None:intergenic 60.0%
TGCAGGGCTTCCGTTACGTC+CGG + chr2_4:11846729-11846748 Msa0315440:CDS 60.0%
!! ATAATGGGCCCGGCCATGGT+GGG + chr2_4:11848178-11848197 Msa0315440:intron 60.0%
TGCACTCACTACGCACAGCG+TGG + chr2_4:11849683-11849702 Msa0315440:CDS 60.0%
TCATCCTCGTGACCGTGCCG+CGG + chr2_4:11845312-11845331 Msa0315440:CDS 65.0%
ATTACCGCGGCACGGTCACG+AGG - chr2_4:11845319-11845338 None:intergenic 65.0%
ACGGAAGCCCTGCAGGGCTA+AGG - chr2_4:11846723-11846742 None:intergenic 65.0%
! GGACGTAACGGAAGCCCTGC+AGG - chr2_4:11846730-11846749 None:intergenic 65.0%
!! CATAATGGGCCCGGCCATGG+TGG + chr2_4:11848177-11848196 Msa0315440:intron 65.0%
!! AGCTCCATCGCCGGTTCCCC+CGG + chr2_4:11846123-11846142 Msa0315440:CDS 70.0%
GAAACCGGGGGAACCGGCGA+TGG - chr2_4:11846130-11846149 None:intergenic 70.0%
GGGGGAACCGGCGATGGAGC+TGG - chr2_4:11846124-11846143 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 11844781 11850747 11844781 ID=Msa0315440;Name=Msa0315440
chr2_4 mRNA 11844781 11850747 11844781 ID=Msa0315440-mRNA-1;Parent=Msa0315440;Name=Msa0315440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=257|1|1|1|1|1|7|687|478
chr2_4 exon 11844781 11845116 11844781 ID=Msa0315440-mRNA-1:exon:4527;Parent=Msa0315440-mRNA-1
chr2_4 exon 11845191 11845333 11845191 ID=Msa0315440-mRNA-1:exon:4528;Parent=Msa0315440-mRNA-1
chr2_4 exon 11845426 11845491 11845426 ID=Msa0315440-mRNA-1:exon:4529;Parent=Msa0315440-mRNA-1
chr2_4 exon 11845771 11845893 11845771 ID=Msa0315440-mRNA-1:exon:4530;Parent=Msa0315440-mRNA-1
chr2_4 exon 11846025 11846339 11846025 ID=Msa0315440-mRNA-1:exon:4531;Parent=Msa0315440-mRNA-1
chr2_4 exon 11846430 11846750 11846430 ID=Msa0315440-mRNA-1:exon:4532;Parent=Msa0315440-mRNA-1
chr2_4 exon 11849671 11850747 11849671 ID=Msa0315440-mRNA-1:exon:4533;Parent=Msa0315440-mRNA-1
chr2_4 five_prime_UTR 11844781 11845037 11844781 ID=Msa0315440-mRNA-1:five_prime_utr;Parent=Msa0315440-mRNA-1
chr2_4 CDS 11845038 11845116 11845038 ID=Msa0315440-mRNA-1:cds;Parent=Msa0315440-mRNA-1
chr2_4 CDS 11845191 11845333 11845191 ID=Msa0315440-mRNA-1:cds;Parent=Msa0315440-mRNA-1
chr2_4 CDS 11845426 11845491 11845426 ID=Msa0315440-mRNA-1:cds;Parent=Msa0315440-mRNA-1
chr2_4 CDS 11845771 11845893 11845771 ID=Msa0315440-mRNA-1:cds;Parent=Msa0315440-mRNA-1
chr2_4 CDS 11846025 11846339 11846025 ID=Msa0315440-mRNA-1:cds;Parent=Msa0315440-mRNA-1
chr2_4 CDS 11846430 11846750 11846430 ID=Msa0315440-mRNA-1:cds;Parent=Msa0315440-mRNA-1
chr2_4 CDS 11849671 11850060 11849671 ID=Msa0315440-mRNA-1:cds;Parent=Msa0315440-mRNA-1
chr2_4 three_prime_UTR 11850061 11850747 11850061 ID=Msa0315440-mRNA-1:three_prime_utr;Parent=Msa0315440-mRNA-1
Gene Sequence

>Msa0315440

ATGGACCACTTTCCTCGCTCCACTCAACCTGATCCGTCTTCTCAATGGACCGGGCCGGATTCTCAAACCGGTTTAGAAGAACCTATGTGGCAATTGGGGTTAGGTGGTGAAGATTCCTATCCACAACGACCTGATGAGGTTGATTGCACTTACTATTTGAGAACTGGTTTTTGTGGCTTTGGTTCTAGGTGTCGGTTCAATCATCCTCGTGACCGTGCCGCGGTTATTGGAGCTGCTTCTAGGACTGTTGGGGAGTATCCTGAACGTGTTGGACAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCATCTTGTAAGTATCATCATCCGAAACAGACAGGAGCCACTGATGCTAGCCCTGTTTCACTAAATTATTATGGATATCCGTTACGTCCGGGTGAAAAGGAATGTTCATATTTTGTGAAAACGGGGCAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCAGTTCCTGCTAGTGTACAAATTCCAGCTCCATCGCCGGTTCCCCCGGTTTCACCTTTACATGTACCAGTACCTTCCCCATTGTATCCAACCGTACAGACTCCATCTGGACCTTCTTCACAACAAATTGGGGTACTGGTCGCAAGGCCACCTCTACTACATGGTTCGTTTGTCCAGAGCCCCTATGGACCTATGGTATTGTCCCCAACCATGGTTCCTTTTTCTGGCTGGGGTCCTTATCAGGCTACTGCAACAAGCCCTGTACTTCCTTCTGGTTCTCCAGCTAATGTTGGCTCCACACAGCTTTATGGGATAACCCAGCTACCTTCACCGGGTAATGCCTATACTGGACCTTATCAACTTTCTGGTTCCTCAGTCGGTCCTTCAAGCAGAAATCAGAACGAGCAATCATTTCCAGCAAGTCCTAATCAACCAGAGTATCATTATTACTCCAAACCAGAGGAGCTTCCTTTTGCTCCATCTTATAGGTATCACAAACCACCAGACATGAGTGCACCAAAAGTGAATGCCGTCCTTAGCCCTGCAGGGCTTCCGTTACGTCCGGGAGCAGCACTCTGCACTCACTACGCACAGCGTGGTATATGCAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATTGCACCACTGAGTTACAGTCCATCTGCCTCTTCCCTGACAGATGTACCAGTTGCACCCTACTTTGTGGGTTCATCCGTTGGTACTCTTGTTCCTTCATCTTCTTCACCAGAGTTGCAGCCAGAACTTACTGCAGGATCCAACAGGGAGTCTGTTCCTTCTAGAATATCGTCATCAGTAAGCACATCAACTGGATCAGTTGGCTTGACTTTGCCAACTGGTGGCCCTGTTTCTCAATCAAGCACTCGAAGTTCTAGTCCTTTAGCACCTGCCAATACCACGACAAGTAGCAATGTTTCTCACCCCTCAAATTAA
Protein sequence

>Msa0315440

MDHFPRSTQPDPSSQWTGPDSQTGLEEPMWQLGLGGEDSYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAAVIGAASRTVGEYPERVGQPVCQYYMRTRSCKFGASCKYHHPKQTGATDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPASVQIPAPSPVPPVSPLHVPVPSPLYPTVQTPSGPSSQQIGVLVARPPLLHGSFVQSPYGPMVLSPTMVPFSGWGPYQATATSPVLPSGSPANVGSTQLYGITQLPSPGNAYTGPYQLSGSSVGPSSRNQNEQSFPASPNQPEYHYYSKPEELPFAPSYRYHKPPDMSAPKVNAVLSPAGLPLRPGAALCTHYAQRGICKFGPACKFDHPIAPLSYSPSASSLTDVPVAPYFVGSSVGTLVPSSSSPELQPELTAGSNRESVPSRISSSVSTSTGSVGLTLPTGGPVSQSSTRSSSPLAPANTTTSSNVSHPSN*