Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105320 | XP_003622943.1 | 92.821 | 195 | 14 | 0 | 1 | 195 | 1 | 195 | 1.08e-132 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105320 | sp|Q9MAS5|VA726_ARATH | 68.500 | 200 | 63 | 0 | 1 | 200 | 1 | 200 | 2.99e-105 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105320 | G7L1A5 | 92.821 | 195 | 14 | 0 | 1 | 195 | 1 | 195 | 5.17e-133 | 381 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002300 | Msa1105320 | 0.803113 | 4.070907e-49 | -8.615850e-47 |
| Msa0034540 | Msa1105320 | 0.846954 | 1.569675e-59 | -8.615850e-47 |
| Msa0107830 | Msa1105320 | 0.832607 | 8.585352e-56 | -8.615850e-47 |
| Msa0603300 | Msa1105320 | 0.822546 | 2.236064e-53 | -8.615850e-47 |
| Msa0637590 | Msa1105320 | 0.804790 | 1.823812e-49 | -8.615850e-47 |
| Msa0652590 | Msa1105320 | 0.804004 | 2.659225e-49 | -8.615850e-47 |
| Msa0662040 | Msa1105320 | 0.806415 | 8.317752e-50 | -8.615850e-47 |
| Msa0694320 | Msa1105320 | 0.818891 | 1.546842e-52 | -8.615850e-47 |
| Msa0699170 | Msa1105320 | 0.805968 | 1.033305e-49 | -8.615850e-47 |
| Msa0704560 | Msa1105320 | 0.810292 | 1.239303e-50 | -8.615850e-47 |
| Msa0719860 | Msa1105320 | 0.807834 | 4.163934e-50 | -8.615850e-47 |
| Msa0731580 | Msa1105320 | 0.804076 | 2.569846e-49 | -8.615850e-47 |
| Msa0750830 | Msa1105320 | 0.800085 | 1.700162e-48 | -8.615850e-47 |
| Msa0771810 | Msa1105320 | 0.803620 | 3.195103e-49 | -8.615850e-47 |
| Msa0793270 | Msa1105320 | 0.805393 | 1.364517e-49 | -8.615850e-47 |
| Msa0809920 | Msa1105320 | 0.810873 | 9.284581e-51 | -8.615850e-47 |
| Msa0829990 | Msa1105320 | 0.801888 | 7.279349e-49 | -8.615850e-47 |
| Msa0164350 | Msa1105320 | 0.801330 | 9.476302e-49 | -8.615850e-47 |
| Msa0390200 | Msa1105320 | 0.830805 | 2.388189e-55 | -8.615850e-47 |
| Msa0400010 | Msa1105320 | 0.832625 | 8.496653e-56 | -8.615850e-47 |
| Msa0441750 | Msa1105320 | 0.819229 | 1.296191e-52 | -8.615850e-47 |
| Msa1027910 | Msa1105320 | 0.800808 | 1.211491e-48 | -8.615850e-47 |
| Msa1030210 | Msa1105320 | 0.840086 | 1.074566e-57 | -8.615850e-47 |
| Msa1035050 | Msa1105320 | 0.813509 | 2.468801e-51 | -8.615850e-47 |
| Msa1061840 | Msa1105320 | 0.803949 | 2.730705e-49 | -8.615850e-47 |
| Msa1062060 | Msa1105320 | 0.802482 | 5.495060e-49 | -8.615850e-47 |
| Msa1069250 | Msa1105320 | 0.840631 | 7.742739e-58 | -8.615850e-47 |
| Msa1075090 | Msa1105320 | 0.819369 | 1.204110e-52 | -8.615850e-47 |
| Msa1077970 | Msa1105320 | 0.803460 | 3.450227e-49 | -8.615850e-47 |
| Msa1084890 | Msa1105320 | 0.814424 | 1.551587e-51 | -8.615850e-47 |
| Msa1095590 | Msa1105320 | 0.808171 | 3.530630e-50 | -8.615850e-47 |
| Msa1105320 | Msa1105360 | 0.827041 | 1.946863e-54 | -8.615850e-47 |
| Msa1105320 | Msa1107220 | 0.827227 | 1.757734e-54 | -8.615850e-47 |
| Msa1105320 | Msa1110900 | 0.815118 | 1.089212e-51 | -8.615850e-47 |
| Msa1105320 | Msa1120580 | 0.813052 | 3.110370e-51 | -8.615850e-47 |
| Msa1105320 | Msa1131120 | 0.813396 | 2.614679e-51 | -8.615850e-47 |
| Msa1105320 | Msa1136630 | 0.804199 | 2.421971e-49 | -8.615850e-47 |
| Msa1105320 | Msa1137750 | 0.809947 | 1.470861e-50 | -8.615850e-47 |
| Msa1105320 | Msa1142390 | 0.804548 | 2.048584e-49 | -8.615850e-47 |
| Msa1105320 | Msa1174280 | 0.809662 | 1.693977e-50 | -8.615850e-47 |
| Msa1105320 | Msa1202110 | 0.821409 | 4.100184e-53 | -8.615850e-47 |
| Msa1105320 | Msa1211610 | 0.817798 | 2.735418e-52 | -8.615850e-47 |
| Msa1105320 | Msa1254870 | 0.821470 | 3.968442e-53 | -8.615850e-47 |
| Msa1105320 | Msa1299480 | 0.811249 | 7.693463e-51 | -8.615850e-47 |
| Msa1105320 | Msa1320160 | 0.822493 | 2.299839e-53 | -8.615850e-47 |
| Msa1105320 | Msa1328430 | 0.821824 | 3.288496e-53 | -8.615850e-47 |
| Msa1105320 | Msa1405500 | 0.806361 | 8.538244e-50 | -8.615850e-47 |
| Msa1105320 | Msa1427000 | 0.805888 | 1.073925e-49 | -8.615850e-47 |
| Msa1105320 | Msa1438160 | 0.815995 | 6.945370e-52 | -8.615850e-47 |
| Msa1105320 | Msa1439780 | 0.809240 | 2.086802e-50 | -8.615850e-47 |
| Msa1105320 | Msa1455200 | 0.807055 | 6.092130e-50 | -8.615850e-47 |
| Msa0271700 | Msa1105320 | 0.802997 | 4.301659e-49 | -8.615850e-47 |
| Msa0275730 | Msa1105320 | 0.826730 | 2.310643e-54 | -8.615850e-47 |
| Msa0310190 | Msa1105320 | 0.806336 | 8.645185e-50 | -8.615850e-47 |
| Msa0316230 | Msa1105320 | 0.819253 | 1.280013e-52 | -8.615850e-47 |
| Msa0319680 | Msa1105320 | 0.832043 | 1.183871e-55 | -8.615850e-47 |
| Msa0320170 | Msa1105320 | 0.806624 | 7.513699e-50 | -8.615850e-47 |
| Msa0324810 | Msa1105320 | 0.803762 | 2.986651e-49 | -8.615850e-47 |
| Msa0346170 | Msa1105320 | 0.821909 | 3.141541e-53 | -8.615850e-47 |
| Msa0353010 | Msa1105320 | 0.814132 | 1.800371e-51 | -8.615850e-47 |
| Msa0491980 | Msa1105320 | 0.801693 | 7.983122e-49 | -8.615850e-47 |
| Msa0512280 | Msa1105320 | 0.808626 | 2.823078e-50 | -8.615850e-47 |
| Msa0850480 | Msa1105320 | 0.804686 | 1.917712e-49 | -8.615850e-47 |
| Msa0874750 | Msa1105320 | 0.805826 | 1.106769e-49 | -8.615850e-47 |
| Msa0968990 | Msa1105320 | 0.808546 | 2.937583e-50 | -8.615850e-47 |
| Msa0976400 | Msa1105320 | 0.806633 | 7.482245e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105320 | MtrunA17_Chr7g0237521 | 92.821 | 195 | 14 | 0 | 1 | 195 | 1 | 195 | 9.95e-137 | 381 |
| Msa1105320 | MtrunA17_Chr4g0010271 | 73.846 | 195 | 51 | 0 | 1 | 195 | 1 | 195 | 1.01e-109 | 313 |
| Msa1105320 | MtrunA17_Chr1g0169861 | 66.351 | 211 | 71 | 0 | 1 | 211 | 51 | 261 | 2.09e-108 | 312 |
| Msa1105320 | MtrunA17_Chr7g0237561 | 71.282 | 195 | 56 | 0 | 1 | 195 | 1 | 195 | 3.15e-104 | 300 |
| Msa1105320 | MtrunA17_Chr4g0043521 | 66.321 | 193 | 65 | 0 | 3 | 195 | 5 | 197 | 1.69e-99 | 287 |
| Msa1105320 | MtrunA17_Chr2g0296021 | 61.137 | 211 | 82 | 0 | 1 | 211 | 1 | 211 | 9.87e-99 | 286 |
| Msa1105320 | MtrunA17_Chr2g0291651 | 65.285 | 193 | 67 | 0 | 3 | 195 | 7 | 199 | 7.24e-96 | 278 |
| Msa1105320 | MtrunA17_Chr1g0210521 | 47.186 | 231 | 103 | 2 | 1 | 212 | 1 | 231 | 2.61e-79 | 237 |
| Msa1105320 | MtrunA17_Chr4g0010211 | 70.093 | 107 | 32 | 0 | 64 | 170 | 3 | 109 | 3.17e-52 | 164 |
| Msa1105320 | MtrunA17_Chr1g0169851 | 53.642 | 151 | 54 | 2 | 52 | 187 | 4 | 153 | 3.38e-52 | 165 |
| Msa1105320 | MtrunA17_Chr5g0441741 | 37.173 | 191 | 117 | 3 | 5 | 194 | 2 | 190 | 1.33e-38 | 132 |
| Msa1105320 | MtrunA17_Chr4g0026121 | 31.414 | 191 | 128 | 3 | 5 | 194 | 2 | 190 | 2.22e-34 | 122 |
| Msa1105320 | MtrunA17_Chr4g0064371 | 30.332 | 211 | 140 | 4 | 5 | 210 | 2 | 210 | 3.13e-30 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1105320 | AT1G04760.2 | 68.500 | 200 | 63 | 0 | 1 | 200 | 1 | 200 | 3.04e-106 | 305 |
| Msa1105320 | AT1G04760.1 | 68.500 | 200 | 63 | 0 | 1 | 200 | 1 | 200 | 3.04e-106 | 305 |
| Msa1105320 | AT2G33120.1 | 72.308 | 195 | 54 | 0 | 1 | 195 | 1 | 195 | 4.01e-106 | 305 |
| Msa1105320 | AT1G04750.1 | 71.795 | 195 | 55 | 0 | 1 | 195 | 1 | 195 | 1.22e-105 | 303 |
| Msa1105320 | AT2G33120.2 | 68.966 | 203 | 55 | 1 | 1 | 195 | 1 | 203 | 7.50e-103 | 296 |
| Msa1105320 | AT2G32670.1 | 69.231 | 195 | 60 | 0 | 1 | 195 | 66 | 260 | 1.15e-102 | 298 |
| Msa1105320 | AT4G15780.1 | 60.656 | 183 | 71 | 1 | 1 | 182 | 1 | 183 | 1.92e-81 | 241 |
| Msa1105320 | AT2G33110.1 | 60.000 | 195 | 74 | 1 | 1 | 195 | 1 | 191 | 3.88e-81 | 241 |
| Msa1105320 | AT3G54300.3 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 4.49e-79 | 237 |
| Msa1105320 | AT3G54300.2 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 4.49e-79 | 237 |
| Msa1105320 | AT3G54300.1 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 4.49e-79 | 237 |
| Msa1105320 | AT2G33110.2 | 62.500 | 168 | 63 | 0 | 1 | 168 | 1 | 168 | 1.01e-74 | 224 |
| Msa1105320 | AT1G04750.2 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 5.76e-58 | 180 |
| Msa1105320 | AT1G04750.4 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 5.76e-58 | 180 |
| Msa1105320 | AT1G04750.3 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 5.76e-58 | 180 |
| Msa1105320 | AT5G11150.1 | 34.123 | 211 | 132 | 4 | 5 | 213 | 2 | 207 | 3.58e-39 | 134 |
| Msa1105320 | AT5G11150.2 | 34.123 | 211 | 132 | 4 | 5 | 213 | 2 | 207 | 4.32e-39 | 134 |
| Msa1105320 | AT5G22360.1 | 31.579 | 209 | 138 | 4 | 5 | 211 | 2 | 207 | 6.84e-37 | 129 |
| Msa1105320 | AT4G32150.1 | 34.737 | 190 | 121 | 3 | 5 | 193 | 2 | 189 | 6.72e-35 | 123 |
| Msa1105320 | AT2G25340.1 | 32.632 | 190 | 125 | 3 | 5 | 193 | 2 | 189 | 2.55e-32 | 117 |
| Msa1105320 | AT2G33120.3 | 67.742 | 62 | 20 | 0 | 134 | 195 | 52 | 113 | 4.38e-22 | 88.2 |
| Msa1105320 | AT3G24890.2 | 45.745 | 94 | 45 | 2 | 113 | 200 | 14 | 107 | 7.51e-18 | 76.6 |
Find 40 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAATAAAGAATT+TGG | 0.138378 | 7_3:+43754292 | Msa1105320:CDS |
| CTTTGCAGGCACAAGATTTA+AGG | 0.164312 | 7_3:+43754986 | Msa1105320:intron |
| AGCTATTTCAGCAAAGTTTC+TGG | 0.179504 | 7_3:-43753802 | None:intergenic |
| CAATCTTCACTTGACGATTA+AGG | 0.242055 | 7_3:-43754634 | None:intergenic |
| GCAAGTTTGCTAGCCTCTTC+TGG | 0.245899 | 7_3:-43754459 | None:intergenic |
| TGCATATGCTCCTTCAATTT+CGG | 0.281591 | 7_3:-43754420 | None:intergenic |
| TGGTTGCTGGCAGTCTTTGC+AGG | 0.318131 | 7_3:-43753833 | None:intergenic |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 7_3:+43753761 | Msa1105320:CDS |
| AAAGCTTGAATAAAGAATTT+GGG | 0.394970 | 7_3:+43754293 | Msa1105320:CDS |
| AACTGTCAACCTTCGTGATC+AGG | 0.421098 | 7_3:+43754673 | Msa1105320:CDS |
| TTTGCAGGCACAAGATTTAA+GGG | 0.423640 | 7_3:+43754987 | Msa1105320:intron |
| CAAGAAAGGCCATAGCAATA+TGG | 0.430285 | 7_3:-43754207 | None:intergenic |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 7_3:+43753740 | Msa1105320:CDS |
| TATGTTGGAAAATATTGATC+AGG | 0.458760 | 7_3:+43754518 | Msa1105320:CDS |
| AGCAAAGTTTCTGGTGAAGT+TGG | 0.467454 | 7_3:-43753793 | None:intergenic |
| CTCCTTGATGCGATCAAGAA+AGG | 0.482399 | 7_3:-43754221 | None:intergenic |
| AGCTTACTGCCTTGTTGCTG+TGG | 0.489435 | 7_3:+43754171 | Msa1105320:intron |
| TCAAGTTCAAGATGTTATGT+TGG | 0.490196 | 7_3:+43754503 | Msa1105320:CDS |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 7_3:+43753752 | Msa1105320:CDS |
| GTAATTTAGACCGAAATTGA+AGG | 0.508592 | 7_3:+43754410 | Msa1105320:intron |
| TCTGGTGAAGTTGGTGTGCT+CGG | 0.516912 | 7_3:-43753784 | None:intergenic |
| GGCAAGTACTGAATCCATCA+TGG | 0.518155 | 7_3:-43753905 | None:intergenic |
| GGCCTTTCTTGATCGCATCA+AGG | 0.526618 | 7_3:+43754219 | Msa1105320:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 7_3:+43753891 | Msa1105320:CDS |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 7_3:-43753889 | None:intergenic |
| ACTTGCGAAAGTAAAAGCTC+AGG | 0.550493 | 7_3:+43754476 | Msa1105320:CDS |
| TACTGAATCCATCATGGGCG+AGG | 0.571090 | 7_3:-43753899 | None:intergenic |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 7_3:+43753747 | Msa1105320:CDS |
| TGCAGGCACAAGATTTAAGG+GGG | 0.606935 | 7_3:+43754989 | Msa1105320:intron |
| TTGCAGGCACAAGATTTAAG+GGG | 0.610788 | 7_3:+43754988 | Msa1105320:intron |
| GGCAATTAAGGAGAAAGATG+TGG | 0.621585 | 7_3:+43755019 | Msa1105320:CDS |
| CAAAAGACTCCACAGCAACA+AGG | 0.623781 | 7_3:-43754180 | None:intergenic |
| TTGTGTGGAACATCCAGAAG+AGG | 0.628795 | 7_3:+43754446 | Msa1105320:CDS |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 7_3:-43753877 | None:intergenic |
| GCAAGTACTGAATCCATCAT+GGG | 0.632742 | 7_3:-43753904 | None:intergenic |
| CTTTCTTGATCGCATCAAGG+AGG | 0.649404 | 7_3:+43754222 | Msa1105320:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 7_3:+43753861 | Msa1105320:CDS |
| TTTACCAAAAGATATGCTGG+AGG | 0.669628 | 7_3:+43754247 | Msa1105320:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 7_3:+43754431 | Msa1105320:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 7_3:-43754682 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTGTATATGCA+TGG | + | chr7_3:43754388-43754407 | Msa1105320:intron | 15.0% |
| !! | CAATGTAATTTAGTTATTTA+TGG | - | chr7_3:43754882-43754901 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTGTATATGCA+TGG | + | chr7_3:43754388-43754407 | Msa1105320:intron | 15.0% |
| !! | CAATGTAATTTAGTTATTTA+TGG | - | chr7_3:43754882-43754901 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAAGATAAAACG+AGG | - | chr7_3:43753929-43753948 | None:intergenic | 20.0% |
| !! | AAAAGCTTGAATAAAGAATT+TGG | + | chr7_3:43754292-43754311 | Msa1105320:CDS | 20.0% |
| !! | AAAGCTTGAATAAAGAATTT+GGG | + | chr7_3:43754293-43754312 | Msa1105320:CDS | 20.0% |
| !! | AGGTATATATATGTCTATAT+TGG | + | chr7_3:43754538-43754557 | Msa1105320:intron | 20.0% |
| !! | TTTATGGATGAACAAATAAA+AGG | - | chr7_3:43754700-43754719 | None:intergenic | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | + | chr7_3:43754952-43754971 | Msa1105320:intron | 20.0% |
| !! | TAAAAGAAAAAGATAAAACG+AGG | - | chr7_3:43753929-43753948 | None:intergenic | 20.0% |
| !! | AAAAGCTTGAATAAAGAATT+TGG | + | chr7_3:43754292-43754311 | Msa1105320:CDS | 20.0% |
| !! | AAAGCTTGAATAAAGAATTT+GGG | + | chr7_3:43754293-43754312 | Msa1105320:CDS | 20.0% |
| !! | AGGTATATATATGTCTATAT+TGG | + | chr7_3:43754538-43754557 | Msa1105320:intron | 20.0% |
| !! | TTTATGGATGAACAAATAAA+AGG | - | chr7_3:43754700-43754719 | None:intergenic | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | + | chr7_3:43754952-43754971 | Msa1105320:intron | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | - | chr7_3:43754095-43754114 | None:intergenic | 25.0% |
| ! | TATGTTGGAAAATATTGATC+AGG | + | chr7_3:43754518-43754537 | Msa1105320:CDS | 25.0% |
| !!! | ATTTTATTTGTTTTGTCTGC+AGG | + | chr7_3:43754610-43754629 | Msa1105320:intron | 25.0% |
| !! | ATTTTTACACACACATGAAT+AGG | + | chr7_3:43754836-43754855 | Msa1105320:intron | 25.0% |
| !! | TTTTTACACACACATGAATA+GGG | + | chr7_3:43754837-43754856 | Msa1105320:intron | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | - | chr7_3:43754095-43754114 | None:intergenic | 25.0% |
| ! | TATGTTGGAAAATATTGATC+AGG | + | chr7_3:43754518-43754537 | Msa1105320:CDS | 25.0% |
| !!! | ATTTTATTTGTTTTGTCTGC+AGG | + | chr7_3:43754610-43754629 | Msa1105320:intron | 25.0% |
| !! | ATTTTTACACACACATGAAT+AGG | + | chr7_3:43754836-43754855 | Msa1105320:intron | 25.0% |
| !! | TTTTTACACACACATGAATA+GGG | + | chr7_3:43754837-43754856 | Msa1105320:intron | 25.0% |
| ATCACTTATATACAGCTTTG+TGG | + | chr7_3:43753740-43753759 | Msa1105320:CDS | 30.0% | |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | - | chr7_3:43753856-43753875 | None:intergenic | 30.0% |
| TCAAATGCATTTACATGTAC+TGG | + | chr7_3:43754048-43754067 | Msa1105320:intron | 30.0% | |
| ! | GATTTTACCAAAAGATATGC+TGG | + | chr7_3:43754244-43754263 | Msa1105320:CDS | 30.0% |
| ! | ATTCAAGCTTTTAGATGTTG+CGG | - | chr7_3:43754284-43754303 | None:intergenic | 30.0% |
| GTAATTTAGACCGAAATTGA+AGG | + | chr7_3:43754410-43754429 | Msa1105320:intron | 30.0% | |
| TCAAGTTCAAGATGTTATGT+TGG | + | chr7_3:43754503-43754522 | Msa1105320:CDS | 30.0% | |
| !! | AGTGAAGATTGATGTTTTGA+TGG | + | chr7_3:43754646-43754665 | Msa1105320:CDS | 30.0% |
| ! | TTTTACACACACATGAATAG+GGG | + | chr7_3:43754838-43754857 | Msa1105320:intron | 30.0% |
| TAACTGATATGGTTTGAATG+TGG | + | chr7_3:43754963-43754982 | Msa1105320:intron | 30.0% | |
| ATCACTTATATACAGCTTTG+TGG | + | chr7_3:43753740-43753759 | Msa1105320:CDS | 30.0% | |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | - | chr7_3:43753856-43753875 | None:intergenic | 30.0% |
| TCAAATGCATTTACATGTAC+TGG | + | chr7_3:43754048-43754067 | Msa1105320:intron | 30.0% | |
| ! | GATTTTACCAAAAGATATGC+TGG | + | chr7_3:43754244-43754263 | Msa1105320:CDS | 30.0% |
| ! | ATTCAAGCTTTTAGATGTTG+CGG | - | chr7_3:43754284-43754303 | None:intergenic | 30.0% |
| GTAATTTAGACCGAAATTGA+AGG | + | chr7_3:43754410-43754429 | Msa1105320:intron | 30.0% | |
| TCAAGTTCAAGATGTTATGT+TGG | + | chr7_3:43754503-43754522 | Msa1105320:CDS | 30.0% | |
| !! | AGTGAAGATTGATGTTTTGA+TGG | + | chr7_3:43754646-43754665 | Msa1105320:CDS | 30.0% |
| ! | TTTTACACACACATGAATAG+GGG | + | chr7_3:43754838-43754857 | Msa1105320:intron | 30.0% |
| TAACTGATATGGTTTGAATG+TGG | + | chr7_3:43754963-43754982 | Msa1105320:intron | 30.0% | |
| ! | AGCTATTTCAGCAAAGTTTC+TGG | - | chr7_3:43753805-43753824 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | + | chr7_3:43753861-43753880 | Msa1105320:CDS | 35.0% | |
| TCAATGCAATGCGATATATG+AGG | + | chr7_3:43753974-43753993 | Msa1105320:intron | 35.0% | |
| !! | TACATGTACTGGTTTCATGT+CGG | + | chr7_3:43754059-43754078 | Msa1105320:intron | 35.0% |
| ! | TTTTGATCGCCATATTGCTA+TGG | + | chr7_3:43754198-43754217 | Msa1105320:CDS | 35.0% |
| TTTACCAAAAGATATGCTGG+AGG | + | chr7_3:43754247-43754266 | Msa1105320:CDS | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | - | chr7_3:43754254-43754273 | None:intergenic | 35.0% |
| TGCATATGCTCCTTCAATTT+CGG | - | chr7_3:43754423-43754442 | None:intergenic | 35.0% | |
| TATGTCTATATTGGATCCTC+TGG | + | chr7_3:43754547-43754566 | Msa1105320:intron | 35.0% | |
| CAATCTTCACTTGACGATTA+AGG | - | chr7_3:43754637-43754656 | None:intergenic | 35.0% | |
| TAGCTATGACACATGGTTTA+TGG | - | chr7_3:43754716-43754735 | None:intergenic | 35.0% | |
| TTTGCAGGCACAAGATTTAA+GGG | + | chr7_3:43754987-43755006 | Msa1105320:intron | 35.0% | |
| ! | AGCTATTTCAGCAAAGTTTC+TGG | - | chr7_3:43753805-43753824 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | + | chr7_3:43753861-43753880 | Msa1105320:CDS | 35.0% | |
| TCAATGCAATGCGATATATG+AGG | + | chr7_3:43753974-43753993 | Msa1105320:intron | 35.0% | |
| !! | TACATGTACTGGTTTCATGT+CGG | + | chr7_3:43754059-43754078 | Msa1105320:intron | 35.0% |
| ! | TTTTGATCGCCATATTGCTA+TGG | + | chr7_3:43754198-43754217 | Msa1105320:CDS | 35.0% |
| TTTACCAAAAGATATGCTGG+AGG | + | chr7_3:43754247-43754266 | Msa1105320:CDS | 35.0% | |
| ! | TTTTCCTCCAGCATATCTTT+TGG | - | chr7_3:43754254-43754273 | None:intergenic | 35.0% |
| TGCATATGCTCCTTCAATTT+CGG | - | chr7_3:43754423-43754442 | None:intergenic | 35.0% | |
| TATGTCTATATTGGATCCTC+TGG | + | chr7_3:43754547-43754566 | Msa1105320:intron | 35.0% | |
| CAATCTTCACTTGACGATTA+AGG | - | chr7_3:43754637-43754656 | None:intergenic | 35.0% | |
| TAGCTATGACACATGGTTTA+TGG | - | chr7_3:43754716-43754735 | None:intergenic | 35.0% | |
| TTTGCAGGCACAAGATTTAA+GGG | + | chr7_3:43754987-43755006 | Msa1105320:intron | 35.0% | |
| !! | AGCAAAGTTTCTGGTGAAGT+TGG | - | chr7_3:43753796-43753815 | None:intergenic | 40.0% |
| !!! | GTGAATTTTGTGTTGGTTGC+TGG | - | chr7_3:43753849-43753868 | None:intergenic | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | - | chr7_3:43753880-43753899 | None:intergenic | 40.0% |
| !! | GCAAGTACTGAATCCATCAT+GGG | - | chr7_3:43753907-43753926 | None:intergenic | 40.0% |
| CAAGAAAGGCCATAGCAATA+TGG | - | chr7_3:43754210-43754229 | None:intergenic | 40.0% | |
| GGAGCATATGCAATATTGTG+TGG | + | chr7_3:43754431-43754450 | Msa1105320:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | + | chr7_3:43754476-43754495 | Msa1105320:CDS | 40.0% | |
| AACGATCTGTGCTTCAAAGT+CGG | - | chr7_3:43754575-43754594 | None:intergenic | 40.0% | |
| ATAAAAGGACCTGATCACGA+AGG | - | chr7_3:43754685-43754704 | None:intergenic | 40.0% | |
| TCATCACTAGCTATGACACA+TGG | - | chr7_3:43754723-43754742 | None:intergenic | 40.0% | |
| ! | CAGTACTATGTTTTCTGCGA+TGG | - | chr7_3:43754767-43754786 | None:intergenic | 40.0% |
| CTTTGCAGGCACAAGATTTA+AGG | + | chr7_3:43754986-43755005 | Msa1105320:intron | 40.0% | |
| TTGCAGGCACAAGATTTAAG+GGG | + | chr7_3:43754988-43755007 | Msa1105320:intron | 40.0% | |
| AAGATTTAAGGGGGAATGCA+GGG | + | chr7_3:43754998-43755017 | Msa1105320:CDS | 40.0% | |
| GGCAATTAAGGAGAAAGATG+TGG | + | chr7_3:43755019-43755038 | Msa1105320:CDS | 40.0% | |
| !! | AGCAAAGTTTCTGGTGAAGT+TGG | - | chr7_3:43753796-43753815 | None:intergenic | 40.0% |
| !!! | GTGAATTTTGTGTTGGTTGC+TGG | - | chr7_3:43753849-43753868 | None:intergenic | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | - | chr7_3:43753880-43753899 | None:intergenic | 40.0% |
| !! | GCAAGTACTGAATCCATCAT+GGG | - | chr7_3:43753907-43753926 | None:intergenic | 40.0% |
| CAAGAAAGGCCATAGCAATA+TGG | - | chr7_3:43754210-43754229 | None:intergenic | 40.0% | |
| GGAGCATATGCAATATTGTG+TGG | + | chr7_3:43754431-43754450 | Msa1105320:CDS | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | + | chr7_3:43754476-43754495 | Msa1105320:CDS | 40.0% | |
| AACGATCTGTGCTTCAAAGT+CGG | - | chr7_3:43754575-43754594 | None:intergenic | 40.0% | |
| ATAAAAGGACCTGATCACGA+AGG | - | chr7_3:43754685-43754704 | None:intergenic | 40.0% | |
| TCATCACTAGCTATGACACA+TGG | - | chr7_3:43754723-43754742 | None:intergenic | 40.0% | |
| ! | CAGTACTATGTTTTCTGCGA+TGG | - | chr7_3:43754767-43754786 | None:intergenic | 40.0% |
| CTTTGCAGGCACAAGATTTA+AGG | + | chr7_3:43754986-43755005 | Msa1105320:intron | 40.0% | |
| TTGCAGGCACAAGATTTAAG+GGG | + | chr7_3:43754988-43755007 | Msa1105320:intron | 40.0% | |
| AAGATTTAAGGGGGAATGCA+GGG | + | chr7_3:43754998-43755017 | Msa1105320:CDS | 40.0% | |
| GGCAATTAAGGAGAAAGATG+TGG | + | chr7_3:43755019-43755038 | Msa1105320:CDS | 40.0% | |
| !! | GGCAAGTACTGAATCCATCA+TGG | - | chr7_3:43753908-43753927 | None:intergenic | 45.0% |
| GCAATGCGATATATGAGGCA+CGG | + | chr7_3:43753979-43753998 | Msa1105320:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | + | chr7_3:43754078-43754097 | Msa1105320:intron | 45.0% | |
| CAAAAGACTCCACAGCAACA+AGG | - | chr7_3:43754183-43754202 | None:intergenic | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | - | chr7_3:43754224-43754243 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | + | chr7_3:43754222-43754241 | Msa1105320:CDS | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | + | chr7_3:43754446-43754465 | Msa1105320:CDS | 45.0% | |
| AACTGTCAACCTTCGTGATC+AGG | + | chr7_3:43754673-43754692 | Msa1105320:CDS | 45.0% | |
| ! | TGGTTTGAATGTGGCTTTGC+AGG | + | chr7_3:43754972-43754991 | Msa1105320:intron | 45.0% |
| TGCAGGCACAAGATTTAAGG+GGG | + | chr7_3:43754989-43755008 | Msa1105320:intron | 45.0% | |
| CAAGATTTAAGGGGGAATGC+AGG | + | chr7_3:43754997-43755016 | Msa1105320:CDS | 45.0% | |
| !! | GGCAAGTACTGAATCCATCA+TGG | - | chr7_3:43753908-43753927 | None:intergenic | 45.0% |
| GCAATGCGATATATGAGGCA+CGG | + | chr7_3:43753979-43753998 | Msa1105320:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | + | chr7_3:43754078-43754097 | Msa1105320:intron | 45.0% | |
| CAAAAGACTCCACAGCAACA+AGG | - | chr7_3:43754183-43754202 | None:intergenic | 45.0% | |
| CTCCTTGATGCGATCAAGAA+AGG | - | chr7_3:43754224-43754243 | None:intergenic | 45.0% | |
| CTTTCTTGATCGCATCAAGG+AGG | + | chr7_3:43754222-43754241 | Msa1105320:CDS | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | + | chr7_3:43754446-43754465 | Msa1105320:CDS | 45.0% | |
| AACTGTCAACCTTCGTGATC+AGG | + | chr7_3:43754673-43754692 | Msa1105320:CDS | 45.0% | |
| ! | TGGTTTGAATGTGGCTTTGC+AGG | + | chr7_3:43754972-43754991 | Msa1105320:intron | 45.0% |
| TGCAGGCACAAGATTTAAGG+GGG | + | chr7_3:43754989-43755008 | Msa1105320:intron | 45.0% | |
| CAAGATTTAAGGGGGAATGC+AGG | + | chr7_3:43754997-43755016 | Msa1105320:CDS | 45.0% | |
| ! | ATATACAGCTTTGTGGCGCG+TGG | + | chr7_3:43753747-43753766 | Msa1105320:CDS | 50.0% |
| !! | TCTGGTGAAGTTGGTGTGCT+CGG | - | chr7_3:43753787-43753806 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | - | chr7_3:43753892-43753911 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | + | chr7_3:43753891-43753910 | Msa1105320:CDS | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | - | chr7_3:43753902-43753921 | None:intergenic | 50.0% | |
| ! | AGCTTACTGCCTTGTTGCTG+TGG | + | chr7_3:43754171-43754190 | Msa1105320:intron | 50.0% |
| GGCCTTTCTTGATCGCATCA+AGG | + | chr7_3:43754219-43754238 | Msa1105320:CDS | 50.0% | |
| !! | GCAAGTTTGCTAGCCTCTTC+TGG | - | chr7_3:43754462-43754481 | None:intergenic | 50.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | + | chr7_3:43753747-43753766 | Msa1105320:CDS | 50.0% |
| !! | TCTGGTGAAGTTGGTGTGCT+CGG | - | chr7_3:43753787-43753806 | None:intergenic | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | - | chr7_3:43753892-43753911 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | + | chr7_3:43753891-43753910 | Msa1105320:CDS | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | - | chr7_3:43753902-43753921 | None:intergenic | 50.0% | |
| ! | AGCTTACTGCCTTGTTGCTG+TGG | + | chr7_3:43754171-43754190 | Msa1105320:intron | 50.0% |
| GGCCTTTCTTGATCGCATCA+AGG | + | chr7_3:43754219-43754238 | Msa1105320:CDS | 50.0% | |
| !! | GCAAGTTTGCTAGCCTCTTC+TGG | - | chr7_3:43754462-43754481 | None:intergenic | 50.0% |
| TGGTTGCTGGCAGTCTTTGC+AGG | - | chr7_3:43753836-43753855 | None:intergenic | 55.0% | |
| ! | TGCTTCAAAGTCGGCTCCAG+AGG | - | chr7_3:43754566-43754585 | None:intergenic | 55.0% |
| GGGGGAATGCAGGGCAATTA+AGG | + | chr7_3:43755007-43755026 | Msa1105320:CDS | 55.0% | |
| TGGTTGCTGGCAGTCTTTGC+AGG | - | chr7_3:43753836-43753855 | None:intergenic | 55.0% | |
| ! | TGCTTCAAAGTCGGCTCCAG+AGG | - | chr7_3:43754566-43754585 | None:intergenic | 55.0% |
| GGGGGAATGCAGGGCAATTA+AGG | + | chr7_3:43755007-43755026 | Msa1105320:CDS | 55.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | + | chr7_3:43753752-43753771 | Msa1105320:CDS | 65.0% |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | + | chr7_3:43753752-43753771 | Msa1105320:CDS | 65.0% |
| GGCGCGTGGCACGGTGATTC+TGG | + | chr7_3:43753761-43753780 | Msa1105320:CDS | 70.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | + | chr7_3:43753761-43753780 | Msa1105320:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 43753729 | 43755122 | 43753729 | ID=Msa1105320;Name=Msa1105320 |
| chr7_3 | mRNA | 43753729 | 43755122 | 43753729 | ID=Msa1105320-mRNA-1;Parent=Msa1105320;Name=Msa1105320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.5|0.2|1|1|1|5|0|214 |
| chr7_3 | exon | 43753729 | 43753918 | 43753729 | ID=Msa1105320-mRNA-1:exon:8959;Parent=Msa1105320-mRNA-1 |
| chr7_3 | exon | 43754173 | 43754314 | 43754173 | ID=Msa1105320-mRNA-1:exon:8960;Parent=Msa1105320-mRNA-1 |
| chr7_3 | exon | 43754419 | 43754539 | 43754419 | ID=Msa1105320-mRNA-1:exon:8961;Parent=Msa1105320-mRNA-1 |
| chr7_3 | exon | 43754632 | 43754694 | 43754632 | ID=Msa1105320-mRNA-1:exon:8962;Parent=Msa1105320-mRNA-1 |
| chr7_3 | exon | 43754994 | 43755122 | 43754994 | ID=Msa1105320-mRNA-1:exon:8963;Parent=Msa1105320-mRNA-1 |
| chr7_3 | CDS | 43753729 | 43753918 | 43753729 | ID=Msa1105320-mRNA-1:cds;Parent=Msa1105320-mRNA-1 |
| chr7_3 | CDS | 43754173 | 43754314 | 43754173 | ID=Msa1105320-mRNA-1:cds;Parent=Msa1105320-mRNA-1 |
| chr7_3 | CDS | 43754419 | 43754539 | 43754419 | ID=Msa1105320-mRNA-1:cds;Parent=Msa1105320-mRNA-1 |
| chr7_3 | CDS | 43754632 | 43754694 | 43754632 | ID=Msa1105320-mRNA-1:cds;Parent=Msa1105320-mRNA-1 |
| chr7_3 | CDS | 43754994 | 43755122 | 43754994 | ID=Msa1105320-mRNA-1:cds;Parent=Msa1105320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
