Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665430 | XP_013454832.1 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665430 | sp|Q80Y75|DJB13_MOUSE | 42.939 | 347 | 160 | 7 | 1 | 340 | 1 | 316 | 2.63e-86 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665430 | G8A2L9 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0633570 | Msa0665430 | 0.815425 | 9.304768e-52 | -8.615850e-47 |
| Msa0647430 | Msa0665430 | 0.808158 | 3.552942e-50 | -8.615850e-47 |
| Msa0665430 | Msa0665440 | 0.946191 | 7.385283e-105 | -8.615850e-47 |
| Msa0665430 | Msa0963020 | 0.818657 | 1.748023e-52 | -8.615850e-47 |
| Msa0665430 | Msa1013180 | 0.809463 | 1.868879e-50 | -8.615850e-47 |
| Msa0665430 | Msa1076560 | 0.811672 | 6.226817e-51 | -8.615850e-47 |
| Msa0665430 | Msa1373820 | 0.807430 | 5.073666e-50 | -8.615850e-47 |
| Msa0138360 | Msa0665430 | 0.801782 | 7.655309e-49 | -8.615850e-47 |
| Msa0241830 | Msa0665430 | 0.804027 | 2.630289e-49 | -8.615850e-47 |
| Msa0296250 | Msa0665430 | 0.804147 | 2.483788e-49 | -8.615850e-47 |
| Msa0332640 | Msa0665430 | 0.807119 | 5.905326e-50 | -8.615850e-47 |
| Msa0593700 | Msa0665430 | 0.822225 | 2.654287e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665430 | MtrunA17_Chr4g0006391 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 693 |
| Msa0665430 | MtrunA17_Chr2g0282741 | 70.930 | 344 | 90 | 4 | 1 | 339 | 1 | 339 | 1.85e-171 | 480 |
| Msa0665430 | MtrunA17_Chr4g0040501 | 67.521 | 351 | 99 | 4 | 1 | 341 | 1 | 346 | 1.51e-170 | 478 |
| Msa0665430 | MtrunA17_Chr2g0324921 | 63.429 | 350 | 102 | 5 | 1 | 339 | 1 | 335 | 3.59e-154 | 436 |
| Msa0665430 | MtrunA17_Chr2g0282761 | 60.580 | 345 | 117 | 6 | 1 | 332 | 1 | 339 | 1.64e-136 | 391 |
| Msa0665430 | MtrunA17_Chr3g0138471 | 58.235 | 340 | 125 | 5 | 1 | 338 | 1 | 325 | 1.06e-128 | 371 |
| Msa0665430 | MtrunA17_Chr3g0093111 | 42.029 | 345 | 158 | 4 | 3 | 339 | 1 | 311 | 7.56e-97 | 289 |
| Msa0665430 | MtrunA17_Chr5g0415751 | 58.621 | 145 | 60 | 0 | 194 | 338 | 16 | 160 | 2.91e-57 | 183 |
| Msa0665430 | MtrunA17_Chr7g0269841 | 37.318 | 343 | 180 | 8 | 5 | 338 | 27 | 343 | 7.81e-55 | 182 |
| Msa0665430 | MtrunA17_Chr2g0277721 | 44.624 | 186 | 102 | 1 | 154 | 338 | 74 | 259 | 1.38e-47 | 161 |
| Msa0665430 | MtrunA17_Chr3g0124801 | 41.837 | 196 | 107 | 2 | 147 | 341 | 105 | 294 | 1.13e-45 | 157 |
| Msa0665430 | MtrunA17_Chr8g0334811 | 29.455 | 404 | 159 | 12 | 5 | 338 | 15 | 362 | 4.62e-37 | 137 |
| Msa0665430 | MtrunA17_Chr3g0123861 | 28.689 | 366 | 209 | 13 | 3 | 337 | 81 | 425 | 1.33e-31 | 123 |
| Msa0665430 | MtrunA17_Chr5g0426951 | 29.480 | 346 | 216 | 12 | 4 | 332 | 83 | 417 | 1.50e-26 | 109 |
| Msa0665430 | MtrunA17_Chr6g0478651 | 27.056 | 377 | 214 | 11 | 2 | 339 | 66 | 420 | 3.60e-26 | 108 |
| Msa0665430 | MtrunA17_Chr3g0091351 | 46.875 | 96 | 51 | 0 | 224 | 319 | 2 | 97 | 5.71e-26 | 99.8 |
| Msa0665430 | MtrunA17_Chr2g0322181 | 36.957 | 138 | 85 | 1 | 203 | 338 | 221 | 358 | 2.97e-25 | 105 |
| Msa0665430 | MtrunA17_Chr2g0322181 | 56.338 | 71 | 26 | 1 | 5 | 75 | 14 | 79 | 2.39e-12 | 67.4 |
| Msa0665430 | MtrunA17_Chr4g0025401 | 36.232 | 138 | 86 | 1 | 203 | 338 | 219 | 356 | 2.52e-24 | 102 |
| Msa0665430 | MtrunA17_Chr4g0025401 | 52.113 | 71 | 29 | 1 | 5 | 75 | 14 | 79 | 7.31e-11 | 63.2 |
| Msa0665430 | MtrunA17_Chr3g0087741 | 30.028 | 353 | 211 | 11 | 4 | 337 | 89 | 424 | 2.62e-23 | 100 |
| Msa0665430 | MtrunA17_Chr5g0415731 | 54.667 | 75 | 27 | 1 | 4 | 71 | 5 | 79 | 1.28e-20 | 86.7 |
| Msa0665430 | MtrunA17_Chr4g0010781 | 26.149 | 348 | 220 | 11 | 5 | 331 | 87 | 418 | 6.33e-20 | 90.1 |
| Msa0665430 | MtrunA17_Chr3g0091361 | 49.367 | 79 | 40 | 0 | 3 | 81 | 4 | 82 | 1.93e-19 | 85.5 |
| Msa0665430 | MtrunA17_Chr7g0263971 | 55.385 | 65 | 29 | 0 | 4 | 68 | 369 | 433 | 2.39e-19 | 89.0 |
| Msa0665430 | MtrunA17_Chr2g0333221 | 41.803 | 122 | 51 | 4 | 4 | 125 | 70 | 171 | 6.28e-19 | 87.4 |
| Msa0665430 | MtrunA17_Chr4g0021141 | 55.224 | 67 | 29 | 1 | 4 | 70 | 22 | 87 | 8.53e-18 | 79.0 |
| Msa0665430 | MtrunA17_Chr7g0271891 | 54.545 | 66 | 27 | 1 | 5 | 67 | 17 | 82 | 4.66e-17 | 77.8 |
| Msa0665430 | MtrunA17_Chr1g0159491 | 44.444 | 72 | 39 | 1 | 3 | 74 | 5 | 75 | 5.57e-16 | 72.0 |
| Msa0665430 | MtrunA17_Chr5g0399201 | 47.297 | 74 | 37 | 1 | 4 | 75 | 12 | 85 | 9.90e-16 | 78.2 |
| Msa0665430 | MtrunA17_Chr1g0209551 | 49.296 | 71 | 35 | 1 | 4 | 74 | 16 | 85 | 2.18e-15 | 76.6 |
| Msa0665430 | MtrunA17_Chr5g0427221 | 51.562 | 64 | 30 | 1 | 4 | 67 | 48 | 110 | 3.68e-15 | 72.0 |
| Msa0665430 | MtrunA17_Chr7g0242951 | 50.000 | 70 | 33 | 1 | 3 | 72 | 26 | 93 | 5.56e-15 | 75.9 |
| Msa0665430 | MtrunA17_Chr5g0414471 | 49.315 | 73 | 36 | 1 | 4 | 76 | 25 | 96 | 2.20e-14 | 73.6 |
| Msa0665430 | MtrunA17_Chr8g0344721 | 46.377 | 69 | 32 | 1 | 4 | 67 | 10 | 78 | 4.21e-14 | 70.9 |
| Msa0665430 | MtrunA17_Chr4g0044331 | 54.717 | 53 | 21 | 1 | 18 | 67 | 26 | 78 | 8.29e-14 | 68.2 |
| Msa0665430 | MtrunA17_Chr3g0132971 | 52.239 | 67 | 29 | 2 | 3 | 68 | 68 | 132 | 1.53e-13 | 69.3 |
| Msa0665430 | MtrunA17_Chr6g0460461 | 41.333 | 75 | 40 | 1 | 3 | 73 | 1 | 75 | 2.57e-13 | 68.2 |
| Msa0665430 | MtrunA17_Chr6g0460411 | 42.667 | 75 | 39 | 1 | 3 | 73 | 1 | 75 | 2.79e-13 | 68.2 |
| Msa0665430 | MtrunA17_Chr1g0173931 | 46.154 | 65 | 34 | 1 | 6 | 70 | 40 | 103 | 2.42e-12 | 66.6 |
| Msa0665430 | MtrunA17_Chr6g0460381 | 43.478 | 69 | 35 | 1 | 3 | 67 | 2 | 70 | 2.67e-12 | 65.1 |
| Msa0665430 | MtrunA17_Chr7g0258061 | 31.707 | 123 | 77 | 3 | 6 | 122 | 24 | 145 | 5.66e-12 | 65.5 |
| Msa0665430 | MtrunA17_Chr5g0393371 | 45.070 | 71 | 38 | 1 | 4 | 74 | 6 | 75 | 2.22e-11 | 64.3 |
| Msa0665430 | MtrunA17_Chr2g0286511 | 53.846 | 65 | 28 | 1 | 3 | 67 | 68 | 130 | 6.15e-11 | 63.9 |
| Msa0665430 | MtrunA17_Chr8g0352451 | 42.697 | 89 | 48 | 2 | 5 | 91 | 73 | 160 | 6.98e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665430 | AT3G08910.1 | 77.843 | 343 | 54 | 5 | 1 | 341 | 1 | 323 | 0.0 | 519 |
| Msa0665430 | AT5G01390.1 | 75.588 | 340 | 76 | 4 | 1 | 339 | 1 | 334 | 0.0 | 504 |
| Msa0665430 | AT2G20560.1 | 71.884 | 345 | 81 | 4 | 1 | 338 | 1 | 336 | 6.73e-175 | 489 |
| Msa0665430 | AT4G28480.1 | 67.422 | 353 | 94 | 4 | 1 | 338 | 1 | 347 | 1.45e-162 | 458 |
| Msa0665430 | AT5G25530.2 | 58.166 | 349 | 125 | 6 | 1 | 339 | 1 | 338 | 2.07e-136 | 391 |
| Msa0665430 | AT4G28480.2 | 61.516 | 343 | 73 | 5 | 1 | 338 | 1 | 289 | 3.33e-136 | 389 |
| Msa0665430 | AT5G25530.1 | 56.863 | 357 | 125 | 7 | 1 | 339 | 1 | 346 | 1.69e-133 | 384 |
| Msa0665430 | AT5G01390.2 | 61.224 | 343 | 62 | 5 | 1 | 339 | 1 | 276 | 6.31e-133 | 380 |
| Msa0665430 | AT1G10350.1 | 55.714 | 350 | 145 | 3 | 1 | 341 | 1 | 349 | 6.81e-129 | 372 |
| Msa0665430 | AT3G47940.1 | 52.162 | 370 | 121 | 5 | 1 | 338 | 1 | 346 | 2.31e-125 | 363 |
| Msa0665430 | AT1G59725.1 | 54.416 | 351 | 130 | 4 | 1 | 341 | 1 | 331 | 4.40e-124 | 360 |
| Msa0665430 | AT5G01390.3 | 53.687 | 339 | 55 | 5 | 1 | 339 | 1 | 237 | 1.55e-106 | 311 |
| Msa0665430 | AT2G20550.1 | 55.986 | 284 | 77 | 6 | 100 | 338 | 3 | 283 | 5.23e-97 | 289 |
| Msa0665430 | AT2G20550.2 | 55.986 | 284 | 77 | 6 | 100 | 338 | 3 | 283 | 5.23e-97 | 289 |
| Msa0665430 | AT5G01390.4 | 70.918 | 196 | 50 | 4 | 1 | 195 | 1 | 190 | 2.02e-84 | 255 |
| Msa0665430 | AT1G44160.1 | 43.220 | 236 | 121 | 3 | 111 | 341 | 129 | 356 | 2.77e-52 | 177 |
| Msa0665430 | AT3G62600.1 | 37.037 | 351 | 180 | 11 | 2 | 339 | 24 | 346 | 1.41e-51 | 174 |
| Msa0665430 | AT1G11040.1 | 39.604 | 202 | 107 | 1 | 146 | 332 | 225 | 426 | 2.59e-44 | 157 |
| Msa0665430 | AT5G22060.1 | 30.905 | 398 | 158 | 10 | 5 | 338 | 15 | 359 | 3.92e-37 | 138 |
| Msa0665430 | AT2G22360.1 | 29.091 | 385 | 182 | 13 | 3 | 337 | 85 | 428 | 2.40e-35 | 134 |
| Msa0665430 | AT5G48030.1 | 28.532 | 361 | 203 | 14 | 4 | 331 | 94 | 432 | 6.52e-26 | 107 |
| Msa0665430 | AT3G44110.1 | 36.232 | 138 | 86 | 1 | 203 | 338 | 221 | 358 | 7.95e-24 | 101 |
| Msa0665430 | AT1G80030.4 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 8.32e-21 | 93.6 |
| Msa0665430 | AT1G80030.2 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-20 | 93.2 |
| Msa0665430 | AT1G80030.3 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-20 | 93.2 |
| Msa0665430 | AT1G80030.1 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-20 | 93.2 |
| Msa0665430 | AT3G17830.1 | 56.000 | 75 | 31 | 1 | 2 | 76 | 61 | 133 | 2.01e-19 | 89.7 |
| Msa0665430 | AT4G39960.1 | 50.588 | 85 | 36 | 2 | 4 | 88 | 85 | 163 | 8.45e-19 | 87.4 |
| Msa0665430 | AT4G39960.1 | 32.353 | 136 | 88 | 3 | 204 | 337 | 301 | 434 | 2.48e-14 | 73.9 |
| Msa0665430 | AT4G39960.2 | 50.588 | 85 | 36 | 2 | 4 | 88 | 85 | 163 | 8.45e-19 | 87.4 |
| Msa0665430 | AT4G39960.2 | 32.353 | 136 | 88 | 3 | 204 | 337 | 301 | 434 | 2.48e-14 | 73.9 |
| Msa0665430 | AT3G44110.2 | 37.037 | 108 | 66 | 1 | 203 | 308 | 221 | 328 | 2.61e-17 | 82.0 |
| Msa0665430 | AT5G03160.1 | 52.308 | 65 | 31 | 0 | 4 | 68 | 370 | 434 | 2.41e-16 | 80.1 |
| Msa0665430 | AT1G68370.1 | 52.113 | 71 | 33 | 1 | 4 | 74 | 17 | 86 | 5.36e-16 | 79.0 |
| Msa0665430 | AT1G56300.2 | 51.515 | 66 | 29 | 1 | 5 | 67 | 14 | 79 | 9.69e-16 | 73.2 |
| Msa0665430 | AT1G56300.1 | 51.515 | 66 | 29 | 1 | 5 | 67 | 14 | 79 | 1.13e-15 | 73.9 |
| Msa0665430 | AT5G16650.2 | 51.562 | 64 | 30 | 1 | 4 | 67 | 11 | 73 | 1.94e-15 | 73.6 |
| Msa0665430 | AT5G16650.1 | 51.562 | 64 | 30 | 1 | 4 | 67 | 11 | 73 | 2.73e-15 | 72.0 |
| Msa0665430 | AT1G59980.2 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 8.24e-15 | 75.1 |
| Msa0665430 | AT1G59980.1 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 1.60e-14 | 74.3 |
| Msa0665430 | AT2G41000.2 | 46.377 | 69 | 33 | 1 | 3 | 67 | 2 | 70 | 3.06e-14 | 71.2 |
| Msa0665430 | AT3G08970.1 | 49.333 | 75 | 34 | 2 | 3 | 77 | 26 | 96 | 4.03e-14 | 73.6 |
| Msa0665430 | AT3G08970.2 | 49.333 | 75 | 34 | 2 | 3 | 77 | 26 | 96 | 4.03e-14 | 73.6 |
| Msa0665430 | AT2G35720.1 | 45.205 | 73 | 38 | 1 | 4 | 74 | 15 | 87 | 4.94e-14 | 73.6 |
| Msa0665430 | AT2G41000.1 | 46.377 | 69 | 33 | 1 | 3 | 67 | 2 | 70 | 6.49e-14 | 69.7 |
| Msa0665430 | AT2G21510.3 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.03e-14 | 71.6 |
| Msa0665430 | AT2G21510.1 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.03e-14 | 71.6 |
| Msa0665430 | AT2G21510.2 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.96e-14 | 71.6 |
| Msa0665430 | AT2G21510.4 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.96e-14 | 71.6 |
| Msa0665430 | AT2G21510.5 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 1.23e-13 | 71.2 |
| Msa0665430 | AT1G24120.1 | 44.595 | 74 | 40 | 1 | 4 | 77 | 20 | 92 | 1.96e-13 | 71.2 |
| Msa0665430 | AT2G33735.1 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 2.65e-13 | 66.2 |
| Msa0665430 | AT2G33735.2 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 2.65e-13 | 66.2 |
| Msa0665430 | AT5G06910.1 | 49.231 | 65 | 32 | 1 | 6 | 70 | 31 | 94 | 8.16e-13 | 68.6 |
| Msa0665430 | AT1G71000.2 | 43.939 | 66 | 34 | 1 | 5 | 67 | 9 | 74 | 7.52e-12 | 63.5 |
| Msa0665430 | AT4G39150.3 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 1.05e-11 | 65.5 |
| Msa0665430 | AT4G39150.1 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 1.05e-11 | 65.5 |
| Msa0665430 | AT4G39150.2 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 1.05e-11 | 65.5 |
| Msa0665430 | AT1G71000.1 | 43.939 | 66 | 34 | 1 | 5 | 67 | 9 | 74 | 1.59e-11 | 62.4 |
| Msa0665430 | AT4G19570.1 | 51.515 | 66 | 30 | 1 | 3 | 68 | 65 | 128 | 2.75e-11 | 65.1 |
| Msa0665430 | AT3G12170.1 | 46.154 | 65 | 34 | 1 | 6 | 70 | 13 | 76 | 3.27e-11 | 63.5 |
| Msa0665430 | AT1G21080.3 | 41.250 | 80 | 46 | 1 | 4 | 83 | 6 | 84 | 3.67e-11 | 64.3 |
| Msa0665430 | AT1G21080.1 | 41.250 | 80 | 46 | 1 | 4 | 83 | 6 | 84 | 4.24e-11 | 63.9 |
| Msa0665430 | AT5G05750.1 | 37.273 | 110 | 61 | 3 | 4 | 113 | 114 | 215 | 4.58e-11 | 63.2 |
| Msa0665430 | AT3G12170.2 | 46.154 | 65 | 34 | 1 | 6 | 70 | 49 | 112 | 5.58e-11 | 63.2 |
Find 111 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCATCTTTCTTGTTATT+AGG | 0.176740 | 4_4:-4892553 | None:intergenic |
| TTCAGAGATTTGCTTAAATT+TGG | 0.186487 | 4_4:-4892578 | None:intergenic |
| TCCCATCGAGGGTAGTTATT+TGG | 0.188250 | 4_4:-4895589 | None:intergenic |
| CAGCATCTTTCTTGTTATTA+GGG | 0.208495 | 4_4:-4892552 | None:intergenic |
| TCCTAAGGAACCTTCCAAAA+AGG | 0.245405 | 4_4:+4895688 | Msa0665430:CDS |
| TTGGTGTGTGTTTGCATATT+TGG | 0.254785 | 4_4:+4896035 | Msa0665430:three_prime_UTR |
| GCTTTCCGAGGGGAATGTTT+AGG | 0.274668 | 4_4:+4893810 | Msa0665430:CDS |
| CTTTCCGAGGGGAATGTTTA+GGG | 0.283758 | 4_4:+4893811 | Msa0665430:CDS |
| TCATATGAAGAAGTAATTAA+AGG | 0.309573 | 4_4:+4895650 | Msa0665430:CDS |
| ATCTAACACATCTTCATATA+TGG | 0.310157 | 4_4:-4895826 | None:intergenic |
| TGCTCTGATGTAAGTCTTGA+TGG | 0.316745 | 4_4:-4895743 | None:intergenic |
| AGTTTGGAGGATTTGTATAA+AGG | 0.321209 | 4_4:+4893926 | Msa0665430:CDS |
| TGGCGGTGGAATGGGTGATA+TGG | 0.323498 | 4_4:+4893766 | Msa0665430:CDS |
| CCCATCGAGGGTAGTTATTT+GGG | 0.326924 | 4_4:-4895588 | None:intergenic |
| CTCTGTTCATTTCCCTTCTC+CGG | 0.330584 | 4_4:-4895437 | None:intergenic |
| ATATGAAGATGTGTTAGATT+TGG | 0.333768 | 4_4:+4895830 | Msa0665430:three_prime_UTR |
| AAACAAGGTCTGCAGGTATA+AGG | 0.341570 | 4_4:-4895463 | None:intergenic |
| TCTTCTTCAAATCGGATTCA+TGG | 0.343612 | 4_4:+4892426 | Msa0665430:exon |
| TTGTTATTAGGGTTCTTATC+AGG | 0.349663 | 4_4:-4892541 | None:intergenic |
| GTTTGGAGGATTTGTATAAA+GGG | 0.350475 | 4_4:+4893927 | Msa0665430:CDS |
| TTTAGTTATGTGAAAAGTTT+TGG | 0.352721 | 4_4:+4896016 | Msa0665430:three_prime_UTR |
| AGAATTTCCTCAACTGTAGT+AGG | 0.358832 | 4_4:-4895365 | None:intergenic |
| TTGGAAGGTTCCTTAGGAAT+TGG | 0.363891 | 4_4:-4895683 | None:intergenic |
| GGTGGTCATCCTGGTGCATC+TGG | 0.369509 | 4_4:+4893788 | Msa0665430:CDS |
| GAGAACATTGCCTTGCAGTT+TGG | 0.378422 | 4_4:+4893910 | Msa0665430:CDS |
| CTTCCTCTTCTTCTTCAAAT+CGG | 0.382846 | 4_4:+4892418 | Msa0665430:five_prime_UTR |
| TTCGGGTTTCAAAGACCATT+TGG | 0.392906 | 4_4:+4893746 | Msa0665430:CDS |
| TTAATTACTTCTTCATATGA+TGG | 0.396614 | 4_4:-4895647 | None:intergenic |
| AGACCATTTGGCGGTGGAAT+GGG | 0.427291 | 4_4:+4893758 | Msa0665430:CDS |
| GTGTACATCAATTGATGAAA+TGG | 0.429386 | 4_4:-4896103 | None:intergenic |
| ATCGCAAACTTGCTATGAAA+TGG | 0.429662 | 4_4:+4892515 | Msa0665430:CDS |
| GGTGATATGGGTGGTCATCC+TGG | 0.434210 | 4_4:+4893779 | Msa0665430:CDS |
| CTTCTTCAAATCGGATTCAT+GGG | 0.435276 | 4_4:+4892427 | Msa0665430:exon |
| GGCGGTGGAATGGGTGATAT+GGG | 0.438794 | 4_4:+4893767 | Msa0665430:CDS |
| ATGGTGGGCCGACAATGTTC+CGG | 0.442105 | 4_4:+4893684 | Msa0665430:CDS |
| AACACATCTTCATATATGGC+TGG | 0.444571 | 4_4:-4895822 | None:intergenic |
| GTGTAAAAGAAATATCCAAA+TGG | 0.445259 | 4_4:-4892363 | None:intergenic |
| ATCAAGCCAGGTTGGAAGAA+AGG | 0.451023 | 4_4:+4895398 | Msa0665430:CDS |
| AAGACCATTTGGCGGTGGAA+TGG | 0.454672 | 4_4:+4893757 | Msa0665430:CDS |
| ATATGGTGAGGAGGGGTTGA+AGG | 0.458111 | 4_4:+4893616 | Msa0665430:CDS |
| TCAGAAAATCCACCTGCACC+TGG | 0.459388 | 4_4:-4893653 | None:intergenic |
| TTCAATCAATTGGAAATTCG+TGG | 0.470850 | 4_4:+4895874 | Msa0665430:three_prime_UTR |
| TTTGTTCCTTTCTTCCAACC+TGG | 0.471768 | 4_4:-4895404 | None:intergenic |
| AATATGTCATCCGCACTTCT+CGG | 0.475047 | 4_4:-4893713 | None:intergenic |
| CCGCACTTCTCGGATTGAAC+CGG | 0.478831 | 4_4:-4893703 | None:intergenic |
| CTAACAATTGAGATCAAGCC+AGG | 0.485097 | 4_4:+4895386 | Msa0665430:CDS |
| AACATTGCCTTGCAGTTTGG+AGG | 0.487226 | 4_4:+4893913 | Msa0665430:CDS |
| TGTAAAAGAAATATCCAAAT+GGG | 0.492699 | 4_4:-4892362 | None:intergenic |
| TTTCTGACGGCGGTGATGGT+GGG | 0.497456 | 4_4:+4893669 | Msa0665430:CDS |
| AGAGCTGTGTATGATCAATA+TGG | 0.509203 | 4_4:+4893599 | Msa0665430:CDS |
| CAAGGCAATGTTCTCTCTAT+CGG | 0.510097 | 4_4:-4893902 | None:intergenic |
| GCTGGAATCAGTAACATCTC+TGG | 0.511627 | 4_4:-4893972 | None:intergenic |
| CCTCGATGGGAGGAATCTTA+CGG | 0.515468 | 4_4:+4895601 | Msa0665430:CDS |
| GGACTAATGATGGTGTTGAC+GGG | 0.516562 | 4_4:-4895626 | None:intergenic |
| TCCCTCTTGAAGACAGTATG+AGG | 0.516733 | 4_4:-4895503 | None:intergenic |
| AATTCCTAAAAGAAGAGAAA+AGG | 0.517229 | 4_4:-4893838 | None:intergenic |
| TGGTGCATCTGGCTTTCCGA+GGG | 0.518716 | 4_4:+4893799 | Msa0665430:CDS |
| TTTAGGAATTCGGCCGGTGA+AGG | 0.528483 | 4_4:+4893851 | Msa0665430:CDS |
| CAGAAAATCCACCTGCACCT+GGG | 0.530250 | 4_4:-4893652 | None:intergenic |
| CTGGTGCATCTGGCTTTCCG+AGG | 0.535834 | 4_4:+4893798 | Msa0665430:CDS |
| TGAATAATTCTCTTAATCAC+TGG | 0.536623 | 4_4:+4895989 | Msa0665430:three_prime_UTR |
| TTCATATGATGGACTAATGA+TGG | 0.538880 | 4_4:-4895636 | None:intergenic |
| TTGCATTTCGATCTATCTGA+AGG | 0.539158 | 4_4:-4892468 | None:intergenic |
| GGATTGAACCGGAACATTGT+CGG | 0.543122 | 4_4:-4893692 | None:intergenic |
| CTCGGAAAGCCAGATGCACC+AGG | 0.544371 | 4_4:-4893797 | None:intergenic |
| CAATTGAGATCAAGCCAGGT+TGG | 0.546154 | 4_4:+4895390 | Msa0665430:CDS |
| AATCCGATTTGAAGAAGAAG+AGG | 0.551598 | 4_4:-4892421 | None:intergenic |
| TCACCCATTCCACCGCCAAA+TGG | 0.551823 | 4_4:-4893761 | None:intergenic |
| GGGTTTCAAAGACCATTTGG+CGG | 0.553824 | 4_4:+4893749 | Msa0665430:CDS |
| TGAAGAAGTAATTAAAGGAG+AGG | 0.557340 | 4_4:+4895655 | Msa0665430:CDS |
| AGAGGGTATGCCAATTCCTA+AGG | 0.558236 | 4_4:+4895673 | Msa0665430:CDS |
| TGTCAATAATCGCTTGATGC+CGG | 0.560172 | 4_4:-4895771 | None:intergenic |
| CCCAAATAACTACCCTCGAT+GGG | 0.567159 | 4_4:+4895588 | Msa0665430:CDS |
| GCCCAAATAACTACCCTCGA+TGG | 0.568412 | 4_4:+4895587 | Msa0665430:CDS |
| TTTCAAAGACCATTTGGCGG+TGG | 0.571030 | 4_4:+4893752 | Msa0665430:CDS |
| ACACATCTTCATATATGGCT+GGG | 0.572691 | 4_4:-4895821 | None:intergenic |
| TATGGTGAGGAGGGGTTGAA+GGG | 0.576990 | 4_4:+4893617 | Msa0665430:CDS |
| AGAAAATCCACCTGCACCTG+GGG | 0.581731 | 4_4:-4893651 | None:intergenic |
| GAAGAAGTAATTAAAGGAGA+GGG | 0.582830 | 4_4:+4895656 | Msa0665430:CDS |
| CACATTGGCAGATCCTTCAC+CGG | 0.582928 | 4_4:-4893864 | None:intergenic |
| TCTCTTGTAGAAGCTCTGAC+AGG | 0.585328 | 4_4:+4895557 | Msa0665430:CDS |
| TGGACTAATGATGGTGTTGA+CGG | 0.590380 | 4_4:-4895627 | None:intergenic |
| TATGATCAATATGGTGAGGA+GGG | 0.591969 | 4_4:+4893608 | Msa0665430:CDS |
| TGGCTGGGAGGTACCACCAC+TGG | 0.592180 | 4_4:-4895806 | None:intergenic |
| TACAAATCCTCCAAACTGCA+AGG | 0.594020 | 4_4:-4893920 | None:intergenic |
| CTTACATCAGAGCAGAAGAC+CGG | 0.597536 | 4_4:+4895752 | Msa0665430:CDS |
| CGTAAGATTCCTCCCATCGA+GGG | 0.600569 | 4_4:-4895600 | None:intergenic |
| ATGGTGAGGAGGGGTTGAAG+GGG | 0.612762 | 4_4:+4893618 | Msa0665430:CDS |
| GGTGGAATGGGTGATATGGG+TGG | 0.613503 | 4_4:+4893770 | Msa0665430:CDS |
| AAGGAAGCCTACTACAGTTG+AGG | 0.616465 | 4_4:+4895358 | Msa0665430:intron |
| CATACTGTCTTCAAGAGGGA+CGG | 0.632225 | 4_4:+4895506 | Msa0665430:CDS |
| GCCTCATACTGTCTTCAAGA+GGG | 0.644262 | 4_4:+4895502 | Msa0665430:CDS |
| AGAGATGTTACTGATTCCAG+CGG | 0.648475 | 4_4:+4893974 | Msa0665430:CDS |
| TCTTTGAAACCCGAAGAACT+CGG | 0.650196 | 4_4:-4893738 | None:intergenic |
| GAGATGTTACTGATTCCAGC+GGG | 0.654951 | 4_4:+4893975 | Msa0665430:CDS |
| TCATCCCTAAACATTCCCCT+CGG | 0.655585 | 4_4:-4893815 | None:intergenic |
| ATCTTCGTAAACACCAGTGG+TGG | 0.656515 | 4_4:+4895793 | Msa0665430:exon |
| AGCCTCATACTGTCTTCAAG+AGG | 0.661585 | 4_4:+4895501 | Msa0665430:CDS |
| GGTGCATCTGGCTTTCCGAG+GGG | 0.666004 | 4_4:+4893800 | Msa0665430:CDS |
| CCGGTTCAATCCGAGAAGTG+CGG | 0.669023 | 4_4:+4893703 | Msa0665430:CDS |
| AAATAACTACCCTCGATGGG+AGG | 0.669398 | 4_4:+4895591 | Msa0665430:CDS |
| AAGGATCTGCCAATGTGATG+AGG | 0.672645 | 4_4:+4893870 | Msa0665430:CDS |
| CCGTAAGATTCCTCCCATCG+AGG | 0.673715 | 4_4:-4895601 | None:intergenic |
| GACATCTTCGTAAACACCAG+TGG | 0.677032 | 4_4:+4895790 | Msa0665430:exon |
| GTATGATCAATATGGTGAGG+AGG | 0.684615 | 4_4:+4893607 | Msa0665430:CDS |
| CATCTTCATATATGGCTGGG+AGG | 0.689554 | 4_4:-4895818 | None:intergenic |
| GACTAATGATGGTGTTGACG+GGG | 0.692431 | 4_4:-4895625 | None:intergenic |
| GAAAATCCACCTGCACCTGG+GGG | 0.703339 | 4_4:-4893650 | None:intergenic |
| TGTGTATGATCAATATGGTG+AGG | 0.703352 | 4_4:+4893604 | Msa0665430:CDS |
| GAGAAGGGAAATGAACAGAG+AGG | 0.703900 | 4_4:+4895440 | Msa0665430:CDS |
| ATGATCAATATGGTGAGGAG+GGG | 0.712167 | 4_4:+4893609 | Msa0665430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTGTGTAATTTTAAT+TGG | + | chr4_4:4892633-4892652 | Msa0665430:intron | 15.0% |
| !!! | TATCTTGTGTAATTTTAATT+GGG | + | chr4_4:4892634-4892653 | Msa0665430:intron | 15.0% |
| !!! | ATTTTATGATTTTGGATATT+TGG | + | chr4_4:4893177-4893196 | Msa0665430:intron | 15.0% |
| !! | ATAAACAGCTTAATTATATT+AGG | + | chr4_4:4894196-4894215 | Msa0665430:intron | 15.0% |
| !! | AAAGAATAATTTCATGAAAT+GGG | - | chr4_4:4894839-4894858 | None:intergenic | 15.0% |
| !!! | TTGGAATTTAATTTTATTTG+CGG | + | chr4_4:4895849-4895868 | Msa0665430:three_prime_UTR | 15.0% |
| !!! | TTTCATATTTTTTTAGTTTC+TGG | + | chr4_4:4895957-4895976 | Msa0665430:three_prime_UTR | 15.0% |
| !! | TGTAAAAGAAATATCCAAAT+GGG | - | chr4_4:4892365-4892384 | None:intergenic | 20.0% |
| !!! | TTGTGAAGTTTTGATTTTTT+TGG | + | chr4_4:4892670-4892689 | Msa0665430:intron | 20.0% |
| !!! | TGTGAAGTTTTGATTTTTTT+GGG | + | chr4_4:4892671-4892690 | Msa0665430:intron | 20.0% |
| !!! | TGTGTTTTTATTGTTGATTT+TGG | + | chr4_4:4892734-4892753 | Msa0665430:intron | 20.0% |
| !!! | GGTGTTTAATTTTATGATTT+TGG | + | chr4_4:4893169-4893188 | Msa0665430:intron | 20.0% |
| !!! | ATTTTGGATATTTGGAATTT+GGG | + | chr4_4:4893185-4893204 | Msa0665430:intron | 20.0% |
| !!! | TTGTTATTTTCTTGTGATTT+AGG | + | chr4_4:4893370-4893389 | Msa0665430:intron | 20.0% |
| !!! | TTTTTGTTTTGATTGTGATT+AGG | + | chr4_4:4893410-4893429 | Msa0665430:intron | 20.0% |
| !! | GAAAGAATAATTTCATGAAA+TGG | - | chr4_4:4894840-4894859 | None:intergenic | 20.0% |
| !! | TTAATTACTTCTTCATATGA+TGG | - | chr4_4:4895650-4895669 | None:intergenic | 20.0% |
| !! | TCATATGAAGAAGTAATTAA+AGG | + | chr4_4:4895650-4895669 | Msa0665430:CDS | 20.0% |
| !!! | TTTAGTTATGTGAAAAGTTT+TGG | + | chr4_4:4896016-4896035 | Msa0665430:three_prime_UTR | 20.0% |
| ! | GTGTAAAAGAAATATCCAAA+TGG | - | chr4_4:4892366-4892385 | None:intergenic | 25.0% |
| !! | TTCAGAGATTTGCTTAAATT+TGG | - | chr4_4:4892581-4892600 | None:intergenic | 25.0% |
| !!! | GTGAAGTTTTGATTTTTTTG+GGG | + | chr4_4:4892672-4892691 | Msa0665430:intron | 25.0% |
| !!! | TTTTGATTTTTTTGGGGTTT+TGG | + | chr4_4:4892678-4892697 | Msa0665430:intron | 25.0% |
| !!! | TTTGATTTTTTTGGGGTTTT+GGG | + | chr4_4:4892679-4892698 | Msa0665430:intron | 25.0% |
| !!! | ATTGTTGATTTTGGATCATT+TGG | + | chr4_4:4892743-4892762 | Msa0665430:intron | 25.0% |
| !!! | TGTGTTTTTCTTGTTGATTT+TGG | + | chr4_4:4892807-4892826 | Msa0665430:intron | 25.0% |
| !!! | TGGATCATTTGTTTGATTTT+TGG | + | chr4_4:4892827-4892846 | Msa0665430:intron | 25.0% |
| !!! | GGATCATTTGTTTGATTTTT+GGG | + | chr4_4:4892828-4892847 | Msa0665430:intron | 25.0% |
| !!! | GATCATTTGTTTGATTTTTG+GGG | + | chr4_4:4892829-4892848 | Msa0665430:intron | 25.0% |
| !!! | ATTTTTGGGGTTGTAAAATT+TGG | + | chr4_4:4892842-4892861 | Msa0665430:intron | 25.0% |
| !! | TTGTAAAATTTGGAATGTTG+AGG | + | chr4_4:4892852-4892871 | Msa0665430:intron | 25.0% |
| !! | TGTAAAATTTGGAATGTTGA+GGG | + | chr4_4:4892853-4892872 | Msa0665430:intron | 25.0% |
| !!! | ATTTGGAATTGTGAAGTTTT+AGG | + | chr4_4:4892978-4892997 | Msa0665430:intron | 25.0% |
| !!! | TTTGGAATTGTGAAGTTTTA+GGG | + | chr4_4:4892979-4892998 | Msa0665430:intron | 25.0% |
| !! | TTGTGTTTTTCTTGTGATTT+TGG | + | chr4_4:4893032-4893051 | Msa0665430:intron | 25.0% |
| !! | TTTTGTGATTTTGGATCATA+TGG | + | chr4_4:4893109-4893128 | Msa0665430:intron | 25.0% |
| !! | AGGATTACAATTTGGAATTA+AGG | + | chr4_4:4893146-4893165 | Msa0665430:intron | 25.0% |
| !! | GGATTACAATTTGGAATTAA+GGG | + | chr4_4:4893147-4893166 | Msa0665430:intron | 25.0% |
| !! | GATTACAATTTGGAATTAAG+GGG | + | chr4_4:4893148-4893167 | Msa0665430:intron | 25.0% |
| !!! | GATTTTGGATATTTGGAATT+TGG | + | chr4_4:4893184-4893203 | Msa0665430:intron | 25.0% |
| !!! | ATATTTGGAATTTGGGTTTT+TGG | + | chr4_4:4893192-4893211 | Msa0665430:intron | 25.0% |
| !!! | TATTTGGAATTTGGGTTTTT+GGG | + | chr4_4:4893193-4893212 | Msa0665430:intron | 25.0% |
| !! | TTGTGTTTTTCTTGTGATTT+AGG | + | chr4_4:4893032-4893051 | Msa0665430:intron | 25.0% |
| ! | TTAGGATTACTTGGAAATTT+CGG | + | chr4_4:4893257-4893276 | Msa0665430:intron | 25.0% |
| !!! | GGTGTTTATTTTTGTGTTTT+TGG | + | chr4_4:4893301-4893320 | Msa0665430:intron | 25.0% |
| !!! | TGAGATGTTTTTGAAATGTT+GGG | + | chr4_4:4893476-4893495 | Msa0665430:intron | 25.0% |
| !! | TCTTGTGATTTAGAATCATT+TGG | + | chr4_4:4893517-4893536 | Msa0665430:intron | 25.0% |
| !! | TTAGAATCATTTGGAATTGT+TGG | + | chr4_4:4893526-4893545 | Msa0665430:intron | 25.0% |
| ! | AATTCCTAAAAGAAGAGAAA+AGG | - | chr4_4:4893841-4893860 | None:intergenic | 25.0% |
| !!! | TTTCTCTTCTTTTAGGAATT+CGG | + | chr4_4:4893841-4893860 | Msa0665430:CDS | 25.0% |
| !!! | TCTGGAAATCTTCATTTTTT+TGG | - | chr4_4:4893957-4893976 | None:intergenic | 25.0% |
| !!! | TGTATTTTGTTATGTGTTGT+TGG | + | chr4_4:4894096-4894115 | Msa0665430:intron | 25.0% |
| ! | AAATAATCAAATTTCCGCTA+AGG | + | chr4_4:4894164-4894183 | Msa0665430:intron | 25.0% |
| !!! | GTTGTTTTCATAAGCTATAT+TGG | + | chr4_4:4894281-4894300 | Msa0665430:intron | 25.0% |
| ! | AATAAGCTAAAAACAGCTTA+TGG | + | chr4_4:4894316-4894335 | Msa0665430:intron | 25.0% |
| ! | TGATACTTGTAGTTCTTAAA+TGG | + | chr4_4:4894502-4894521 | Msa0665430:intron | 25.0% |
| ! | GAATGAAATAGCATATAGAA+AGG | - | chr4_4:4894540-4894559 | None:intergenic | 25.0% |
| !! | CAAAATAATTCTTCTTTTGC+TGG | + | chr4_4:4894559-4894578 | Msa0665430:intron | 25.0% |
| ! | ATAAACATGATGAAGAATGT+TGG | - | chr4_4:4894615-4894634 | None:intergenic | 25.0% |
| ! | TGCAATAAGACATGTTTAAA+TGG | + | chr4_4:4894727-4894746 | Msa0665430:intron | 25.0% |
| !! | GTTTTATGAGTAAATGACTT+TGG | - | chr4_4:4895015-4895034 | None:intergenic | 25.0% |
| !!! | TAGAAAGTGTTGTCATATAA+CGG | - | chr4_4:4895175-4895194 | None:intergenic | 25.0% |
| !! | TGTATGTTTTCTTATTCTGA+AGG | + | chr4_4:4895339-4895358 | Msa0665430:intron | 25.0% |
| ! | ATCTAACACATCTTCATATA+TGG | - | chr4_4:4895829-4895848 | None:intergenic | 25.0% |
| ! | ATATGAAGATGTGTTAGATT+TGG | + | chr4_4:4895830-4895849 | Msa0665430:three_prime_UTR | 25.0% |
| !!! | TTGTGAACTAGTTTTTAACT+AGG | + | chr4_4:4895900-4895919 | Msa0665430:three_prime_UTR | 25.0% |
| ! | TGAATAATTCTCTTAATCAC+TGG | + | chr4_4:4895989-4896008 | Msa0665430:three_prime_UTR | 25.0% |
| !! | AACTTTTCACATAACTAAAC+AGG | - | chr4_4:4896015-4896034 | None:intergenic | 25.0% |
| ! | TAACACATTTTTCACCCATT+TGG | + | chr4_4:4892348-4892367 | Msa0665430:five_prime_UTR | 30.0% |
| ! | TTGTTATTAGGGTTCTTATC+AGG | - | chr4_4:4892544-4892563 | None:intergenic | 30.0% |
| !! | CAGCATCTTTCTTGTTATTA+GGG | - | chr4_4:4892555-4892574 | None:intergenic | 30.0% |
| !! | TCAGCATCTTTCTTGTTATT+AGG | - | chr4_4:4892556-4892575 | None:intergenic | 30.0% |
| !!! | TTGATTTTTTTGGGGTTTTG+GGG | + | chr4_4:4892680-4892699 | Msa0665430:intron | 30.0% |
| TTTGGATCATTTGGAAACTT+TGG | + | chr4_4:4892752-4892771 | Msa0665430:intron | 30.0% | |
| TTGGATCATTTGGAAACTTT+GGG | + | chr4_4:4892753-4892772 | Msa0665430:intron | 30.0% | |
| !!! | GCTTTTTTCGTTGTTGATTT+TGG | + | chr4_4:4892890-4892909 | Msa0665430:intron | 30.0% |
| !!! | GTTGTTGATTTTGGATCATT+TGG | + | chr4_4:4892899-4892918 | Msa0665430:intron | 30.0% |
| ! | TTTGGATCATTTGGACATTT+TGG | + | chr4_4:4892908-4892927 | Msa0665430:intron | 30.0% |
| ! | TTGGATCATTTGGACATTTT+GGG | + | chr4_4:4892909-4892928 | Msa0665430:intron | 30.0% |
| !! | GTGTTTGATTTTGGATCATT+TGG | + | chr4_4:4892961-4892980 | Msa0665430:intron | 30.0% |
| !!! | GAAGTTTTAGGGTTACAATT+TGG | + | chr4_4:4892990-4893009 | Msa0665430:intron | 30.0% |
| ! | TAGGGTTACAATTTGGAATA+TGG | + | chr4_4:4892997-4893016 | Msa0665430:intron | 30.0% |
| ! | AGGGTTACAATTTGGAATAT+GGG | + | chr4_4:4892998-4893017 | Msa0665430:intron | 30.0% |
| ! | TTCTTGTGATTTTGGACATT+TGG | + | chr4_4:4893040-4893059 | Msa0665430:intron | 30.0% |
| !!! | ATTTGGAGTTTTGAGGTTTT+AGG | + | chr4_4:4893057-4893076 | Msa0665430:intron | 30.0% |
| !!! | AGGTTTACAATTTTAGCTGA+TGG | + | chr4_4:4893077-4893096 | Msa0665430:intron | 30.0% |
| !!! | GGTTTACAATTTTAGCTGAT+GGG | + | chr4_4:4893078-4893097 | Msa0665430:intron | 30.0% |
| !!! | GTTTACAATTTTAGCTGATG+GGG | + | chr4_4:4893079-4893098 | Msa0665430:intron | 30.0% |
| !! | GGTGTTTGATTTTGTGATTT+TGG | + | chr4_4:4893100-4893119 | Msa0665430:intron | 30.0% |
| ATATGGAATTGTGAAGTTTC+AGG | + | chr4_4:4893126-4893145 | Msa0665430:intron | 30.0% | |
| GAAGTTTCAGGATTACAATT+TGG | + | chr4_4:4893138-4893157 | Msa0665430:intron | 30.0% | |
| !! | ATTTGGAATTTGGGTTTTTG+GGG | + | chr4_4:4893194-4893213 | Msa0665430:intron | 30.0% |
| ! | TCTTGTGATTTAGGATTACT+TGG | + | chr4_4:4893248-4893267 | Msa0665430:intron | 30.0% |
| TAGGATTACTTGGAAATTTC+GGG | + | chr4_4:4893258-4893277 | Msa0665430:intron | 30.0% | |
| !!! | TTTTGTGTTTTTGGATCAGT+TGG | + | chr4_4:4893310-4893329 | Msa0665430:intron | 30.0% |
| ! | TTTTTGGATCAGTTGGATTT+TGG | + | chr4_4:4893317-4893336 | Msa0665430:intron | 30.0% |
| ! | TTTTGGATCAGTTGGATTTT+GGG | + | chr4_4:4893318-4893337 | Msa0665430:intron | 30.0% |
| ! | TGGGTTACAATTTGAAATGT+TGG | + | chr4_4:4893337-4893356 | Msa0665430:intron | 30.0% |
| ! | GGGTTACAATTTGAAATGTT+GGG | + | chr4_4:4893338-4893357 | Msa0665430:intron | 30.0% |
| ! | GGTTACAATTTGAAATGTTG+GGG | + | chr4_4:4893339-4893358 | Msa0665430:intron | 30.0% |
| ! | GTTACAATTTGAAATGTTGG+GGG | + | chr4_4:4893340-4893359 | Msa0665430:intron | 30.0% |
| ! | TCTTGTGATTTAGGATCATT+TGG | + | chr4_4:4893379-4893398 | Msa0665430:intron | 30.0% |
| !!! | GTGAGATGTTTTTGAAATGT+TGG | + | chr4_4:4893475-4893494 | Msa0665430:intron | 30.0% |
| !!! | GAGATGTTTTTGAAATGTTG+GGG | + | chr4_4:4893477-4893496 | Msa0665430:intron | 30.0% |
| ! | AGTGATTTCGATTTGTGAAT+AGG | + | chr4_4:4893556-4893575 | Msa0665430:intron | 30.0% |
| ! | ATGACCTTTTCTCTTCTTTT+AGG | + | chr4_4:4893834-4893853 | Msa0665430:CDS | 30.0% |
| AGTTTGGAGGATTTGTATAA+AGG | + | chr4_4:4893926-4893945 | Msa0665430:CDS | 30.0% | |
| GTTTGGAGGATTTGTATAAA+GGG | + | chr4_4:4893927-4893946 | Msa0665430:CDS | 30.0% | |
| !!! | GGAAATCTTCATTTTTTTGG+TGG | - | chr4_4:4893954-4893973 | None:intergenic | 30.0% |
| CAATGCAACTAGGTTAATAT+AGG | - | chr4_4:4894025-4894044 | None:intergenic | 30.0% | |
| CTATATTAACCTAGTTGCAT+TGG | + | chr4_4:4894023-4894042 | Msa0665430:intron | 30.0% | |
| TCAAATAAGCCAATCTAAAC+AGG | + | chr4_4:4894407-4894426 | Msa0665430:intron | 30.0% | |
| TTATTATGGCCTGTTTAGAT+TGG | - | chr4_4:4894419-4894438 | None:intergenic | 30.0% | |
| !! | CAAAATCTGCCACTTTATTA+TGG | - | chr4_4:4894433-4894452 | None:intergenic | 30.0% |
| GTGATGTGATGTAACTATTA+AGG | + | chr4_4:4894680-4894699 | Msa0665430:intron | 30.0% | |
| TTGTCTAAAAAACTTGAGTC+TGG | - | chr4_4:4894783-4894802 | None:intergenic | 30.0% | |
| TATTAGAGCTGTGAATTGAA+TGG | + | chr4_4:4895300-4895319 | Msa0665430:intron | 30.0% | |
| ! | AGGAACAAAGATAACTTTTC+CGG | + | chr4_4:4895418-4895437 | Msa0665430:CDS | 30.0% |
| ATAATAAAAACAAGGTCTGC+AGG | - | chr4_4:4895473-4895492 | None:intergenic | 30.0% | |
| TCTCGTCGATAATAAAAACA+AGG | - | chr4_4:4895481-4895500 | None:intergenic | 30.0% | |
| !! | TTCATATGATGGACTAATGA+TGG | - | chr4_4:4895639-4895658 | None:intergenic | 30.0% |
| TGAAGAAGTAATTAAAGGAG+AGG | + | chr4_4:4895655-4895674 | Msa0665430:CDS | 30.0% | |
| GAAGAAGTAATTAAAGGAGA+GGG | + | chr4_4:4895656-4895675 | Msa0665430:CDS | 30.0% | |
| ! | ATTTGCGGTTTTCAATCAAT+TGG | + | chr4_4:4895864-4895883 | Msa0665430:three_prime_UTR | 30.0% |
| TTCAATCAATTGGAAATTCG+TGG | + | chr4_4:4895874-4895893 | Msa0665430:three_prime_UTR | 30.0% | |
| GTGTACATCAATTGATGAAA+TGG | - | chr4_4:4896106-4896125 | None:intergenic | 30.0% | |
| GGGTGAAAAATGTGTTATCT+GGG | - | chr4_4:4892345-4892364 | None:intergenic | 35.0% | |
| TGGGTGAAAAATGTGTTATC+TGG | - | chr4_4:4892346-4892365 | None:intergenic | 35.0% | |
| CTTCCTCTTCTTCTTCAAAT+CGG | + | chr4_4:4892418-4892437 | Msa0665430:five_prime_UTR | 35.0% | |
| ! | AATCCGATTTGAAGAAGAAG+AGG | - | chr4_4:4892424-4892443 | None:intergenic | 35.0% |
| TCTTCTTCAAATCGGATTCA+TGG | + | chr4_4:4892426-4892445 | Msa0665430:exon | 35.0% | |
| CTTCTTCAAATCGGATTCAT+GGG | + | chr4_4:4892427-4892446 | Msa0665430:exon | 35.0% | |
| TTGCATTTCGATCTATCTGA+AGG | - | chr4_4:4892471-4892490 | None:intergenic | 35.0% | |
| !! | ATCGCAAACTTGCTATGAAA+TGG | + | chr4_4:4892515-4892534 | Msa0665430:CDS | 35.0% |
| TGGATCATTTGGAAACTTTG+GGG | + | chr4_4:4892754-4892773 | Msa0665430:intron | 35.0% | |
| GGGCTACAATTTGAATTGAT+GGG | + | chr4_4:4892774-4892793 | Msa0665430:intron | 35.0% | |
| GGCTACAATTTGAATTGATG+GGG | + | chr4_4:4892775-4892794 | Msa0665430:intron | 35.0% | |
| GCTACAATTTGAATTGATGG+GGG | + | chr4_4:4892776-4892795 | Msa0665430:intron | 35.0% | |
| ! | AAAATTTGGAATGTTGAGGG+TGG | + | chr4_4:4892856-4892875 | Msa0665430:intron | 35.0% |
| ! | TGGATCATTTGGACATTTTG+GGG | + | chr4_4:4892910-4892929 | Msa0665430:intron | 35.0% |
| !!! | TTTGGACATTTTGGGGTTTT+TGG | + | chr4_4:4892917-4892936 | Msa0665430:intron | 35.0% |
| !!! | TTGGACATTTTGGGGTTTTT+GGG | + | chr4_4:4892918-4892937 | Msa0665430:intron | 35.0% |
| ! | GGGTTACAATTTGGAATATG+GGG | + | chr4_4:4892999-4893018 | Msa0665430:intron | 35.0% |
| !! | TTTGGACATTTGGAGTTTTG+AGG | + | chr4_4:4893050-4893069 | Msa0665430:intron | 35.0% |
| ! | TTTGGGGTTACAATTTGGAT+TGG | + | chr4_4:4893210-4893229 | Msa0665430:intron | 35.0% |
| AGGATTACTTGGAAATTTCG+GGG | + | chr4_4:4893259-4893278 | Msa0665430:intron | 35.0% | |
| GAAATTTCGGGGTTACAATT+TGG | + | chr4_4:4893270-4893289 | Msa0665430:intron | 35.0% | |
| ! | GGTTACAATTTGGAATGATG+AGG | + | chr4_4:4893280-4893299 | Msa0665430:intron | 35.0% |
| AGAGCTGTGTATGATCAATA+TGG | + | chr4_4:4893599-4893618 | Msa0665430:CDS | 35.0% | |
| TGTGTATGATCAATATGGTG+AGG | + | chr4_4:4893604-4893623 | Msa0665430:CDS | 35.0% | |
| TATGATCAATATGGTGAGGA+GGG | + | chr4_4:4893608-4893627 | Msa0665430:CDS | 35.0% | |
| ! | GACATATTTTCCGAGTTCTT+CGG | + | chr4_4:4893728-4893747 | Msa0665430:CDS | 35.0% |
| ! | ACATATTTTCCGAGTTCTTC+GGG | + | chr4_4:4893729-4893748 | Msa0665430:CDS | 35.0% |
| CCAATAAAACCAATGCAACT+AGG | - | chr4_4:4894035-4894054 | None:intergenic | 35.0% | |
| !!! | CCTAGTTGCATTGGTTTTAT+TGG | + | chr4_4:4894032-4894051 | Msa0665430:intron | 35.0% |
| ATTAAGCTGTTTATCCGAAC+AGG | - | chr4_4:4894190-4894209 | None:intergenic | 35.0% | |
| TTATGGAAACAGCTTATGAC+AGG | - | chr4_4:4894343-4894362 | None:intergenic | 35.0% | |
| TAAAGACTTGTGAGTCTGTT+TGG | - | chr4_4:4894372-4894391 | None:intergenic | 35.0% | |
| CTAAACAGGCCATAATAAAG+TGG | + | chr4_4:4894421-4894440 | Msa0665430:intron | 35.0% | |
| ! | GCTTCAGTTCTACTATTTTC+TGG | - | chr4_4:4894938-4894957 | None:intergenic | 35.0% |
| AAGCTACAAAGTTACGTTGT+TGG | + | chr4_4:4894954-4894973 | Msa0665430:intron | 35.0% | |
| GATGTATTCAAAAGCTGTGT+TGG | + | chr4_4:4895100-4895119 | Msa0665430:intron | 35.0% | |
| AGAATTTCCTCAACTGTAGT+AGG | - | chr4_4:4895368-4895387 | None:intergenic | 35.0% | |
| ! | AAAGATAACTTTTCCGGAGA+AGG | + | chr4_4:4895424-4895443 | Msa0665430:CDS | 35.0% |
| ! | AAGATAACTTTTCCGGAGAA+GGG | + | chr4_4:4895425-4895444 | Msa0665430:CDS | 35.0% |
| ACACATCTTCATATATGGCT+GGG | - | chr4_4:4895824-4895843 | None:intergenic | 35.0% | |
| AACACATCTTCATATATGGC+TGG | - | chr4_4:4895825-4895844 | None:intergenic | 35.0% | |
| TTGGTGTGTGTTTGCATATT+TGG | + | chr4_4:4896035-4896054 | Msa0665430:three_prime_UTR | 35.0% | |
| TGGGGTTGTAAATTGCATGT+TGG | + | chr4_4:4892698-4892717 | Msa0665430:intron | 40.0% | |
| GGGGTTGTAAATTGCATGTT+GGG | + | chr4_4:4892699-4892718 | Msa0665430:intron | 40.0% | |
| GGGGCTACAATTTGAATTGA+TGG | + | chr4_4:4892773-4892792 | Msa0665430:intron | 40.0% | |
| !!! | ACATTTTGGGGTTTTTGGGT+TGG | + | chr4_4:4892922-4892941 | Msa0665430:intron | 40.0% |
| !!! | TGGGTTGGTATTTTAGCTGA+TGG | + | chr4_4:4892937-4892956 | Msa0665430:intron | 40.0% |
| !!! | GGGTTGGTATTTTAGCTGAT+GGG | + | chr4_4:4892938-4892957 | Msa0665430:intron | 40.0% |
| !!! | GGTTGGTATTTTAGCTGATG+GGG | + | chr4_4:4892939-4892958 | Msa0665430:intron | 40.0% |
| !!! | GGGTTTTTGGGGTTACAATT+TGG | + | chr4_4:4893205-4893224 | Msa0665430:intron | 40.0% |
| TGATCATACACCTCTCTCTT+TGG | - | chr4_4:4893450-4893469 | None:intergenic | 40.0% | |
| ! | AGAGAGGTGTATGATCAGTA+TGG | + | chr4_4:4893453-4893472 | Msa0665430:intron | 40.0% |
| ! | TCATACACAGCTCTCTTTTG+TGG | - | chr4_4:4893593-4893612 | None:intergenic | 40.0% |
| GTATGATCAATATGGTGAGG+AGG | + | chr4_4:4893607-4893626 | Msa0665430:CDS | 40.0% | |
| ATGATCAATATGGTGAGGAG+GGG | + | chr4_4:4893609-4893628 | Msa0665430:CDS | 40.0% | |
| AATATGTCATCCGCACTTCT+CGG | - | chr4_4:4893716-4893735 | None:intergenic | 40.0% | |
| !! | TCTTTGAAACCCGAAGAACT+CGG | - | chr4_4:4893741-4893760 | None:intergenic | 40.0% |
| ! | TTCGGGTTTCAAAGACCATT+TGG | + | chr4_4:4893746-4893765 | Msa0665430:CDS | 40.0% |
| !! | TCTTCTTTTAGGAATTCGGC+CGG | + | chr4_4:4893845-4893864 | Msa0665430:CDS | 40.0% |
| ! | TGCACTTTTCCTCATCACAT+TGG | - | chr4_4:4893882-4893901 | None:intergenic | 40.0% |
| CAAGGCAATGTTCTCTCTAT+CGG | - | chr4_4:4893905-4893924 | None:intergenic | 40.0% | |
| TACAAATCCTCCAAACTGCA+AGG | - | chr4_4:4893923-4893942 | None:intergenic | 40.0% | |
| !! | AGAGATGTTACTGATTCCAG+CGG | + | chr4_4:4893974-4893993 | Msa0665430:CDS | 40.0% |
| AGTCTGTTTGGAAGAGCTTA+TGG | - | chr4_4:4894360-4894379 | None:intergenic | 40.0% | |
| ! | TAAAGTGGCAGATTTTGCGA+TGG | + | chr4_4:4894436-4894455 | Msa0665430:intron | 40.0% |
| CCTTCAATTTCCTACAGCAT+CGG | - | chr4_4:4894877-4894896 | None:intergenic | 40.0% | |
| !! | GTTCTACTATTTTCTGGCAC+AGG | - | chr4_4:4894932-4894951 | None:intergenic | 40.0% |
| TTAAAATTCCGCTGTGCTGT+AGG | + | chr4_4:4895228-4895247 | Msa0665430:intron | 40.0% | |
| TAAAATTCCGCTGTGCTGTA+GGG | + | chr4_4:4895229-4895248 | Msa0665430:intron | 40.0% | |
| CTAACAATTGAGATCAAGCC+AGG | + | chr4_4:4895386-4895405 | Msa0665430:CDS | 40.0% | |
| TTTGTTCCTTTCTTCCAACC+TGG | - | chr4_4:4895407-4895426 | None:intergenic | 40.0% | |
| AAACAAGGTCTGCAGGTATA+AGG | - | chr4_4:4895466-4895485 | None:intergenic | 40.0% | |
| ! | TGGACTAATGATGGTGTTGA+CGG | - | chr4_4:4895630-4895649 | None:intergenic | 40.0% |
| TTGGAAGGTTCCTTAGGAAT+TGG | - | chr4_4:4895686-4895705 | None:intergenic | 40.0% | |
| TCCTAAGGAACCTTCCAAAA+AGG | + | chr4_4:4895688-4895707 | Msa0665430:CDS | 40.0% | |
| CCTAAGGAACCTTCCAAAAA+GGG | + | chr4_4:4895689-4895708 | Msa0665430:CDS | 40.0% | |
| ! | CTCAAGTTTCCCTTTTTGGA+AGG | - | chr4_4:4895701-4895720 | None:intergenic | 40.0% |
| ! | GACTCTCAAGTTTCCCTTTT+TGG | - | chr4_4:4895705-4895724 | None:intergenic | 40.0% |
| TGCTCTGATGTAAGTCTTGA+TGG | - | chr4_4:4895746-4895765 | None:intergenic | 40.0% | |
| TGTCAATAATCGCTTGATGC+CGG | - | chr4_4:4895774-4895793 | None:intergenic | 40.0% | |
| !! | GCTGATGGGGTGTTTGATTT+TGG | + | chr4_4:4892952-4892971 | Msa0665430:intron | 45.0% |
| GAGTGATCAACCAAAGAGAG+AGG | + | chr4_4:4893437-4893456 | Msa0665430:intron | 45.0% | |
| GGATTGAACCGGAACATTGT+CGG | - | chr4_4:4893695-4893714 | None:intergenic | 45.0% | |
| GGGTTTCAAAGACCATTTGG+CGG | + | chr4_4:4893749-4893768 | Msa0665430:CDS | 45.0% | |
| TTTCAAAGACCATTTGGCGG+TGG | + | chr4_4:4893752-4893771 | Msa0665430:CDS | 45.0% | |
| CTTTCCGAGGGGAATGTTTA+GGG | + | chr4_4:4893811-4893830 | Msa0665430:CDS | 45.0% | |
| TCATCCCTAAACATTCCCCT+CGG | - | chr4_4:4893818-4893837 | None:intergenic | 45.0% | |
| AAGGATCTGCCAATGTGATG+AGG | + | chr4_4:4893870-4893889 | Msa0665430:CDS | 45.0% | |
| GAGAACATTGCCTTGCAGTT+TGG | + | chr4_4:4893910-4893929 | Msa0665430:CDS | 45.0% | |
| AACATTGCCTTGCAGTTTGG+AGG | + | chr4_4:4893913-4893932 | Msa0665430:CDS | 45.0% | |
| GCTGGAATCAGTAACATCTC+TGG | - | chr4_4:4893975-4893994 | None:intergenic | 45.0% | |
| !! | GAGATGTTACTGATTCCAGC+GGG | + | chr4_4:4893975-4893994 | Msa0665430:CDS | 45.0% |
| TAACTAGAAAACTCACCCGC+TGG | - | chr4_4:4893993-4894012 | None:intergenic | 45.0% | |
| AATTTCCGCTAAGGCCTGTT+CGG | + | chr4_4:4894173-4894192 | Msa0665430:intron | 45.0% | |
| TTTATCCGAACAGGCCTTAG+CGG | - | chr4_4:4894181-4894200 | None:intergenic | 45.0% | |
| CCGATGCTGTAGGAAATTGA+AGG | + | chr4_4:4894874-4894893 | Msa0665430:intron | 45.0% | |
| AAGGAAGCCTACTACAGTTG+AGG | + | chr4_4:4895358-4895377 | Msa0665430:intron | 45.0% | |
| CAATTGAGATCAAGCCAGGT+TGG | + | chr4_4:4895390-4895409 | Msa0665430:CDS | 45.0% | |
| ! | ATCAAGCCAGGTTGGAAGAA+AGG | + | chr4_4:4895398-4895417 | Msa0665430:CDS | 45.0% |
| CTCTGTTCATTTCCCTTCTC+CGG | - | chr4_4:4895440-4895459 | None:intergenic | 45.0% | |
| GAGAAGGGAAATGAACAGAG+AGG | + | chr4_4:4895440-4895459 | Msa0665430:CDS | 45.0% | |
| AGCCTCATACTGTCTTCAAG+AGG | + | chr4_4:4895501-4895520 | Msa0665430:CDS | 45.0% | |
| GCCTCATACTGTCTTCAAGA+GGG | + | chr4_4:4895502-4895521 | Msa0665430:CDS | 45.0% | |
| TCCCTCTTGAAGACAGTATG+AGG | - | chr4_4:4895506-4895525 | None:intergenic | 45.0% | |
| CATACTGTCTTCAAGAGGGA+CGG | + | chr4_4:4895506-4895525 | Msa0665430:CDS | 45.0% | |
| ! | TCTCTTGTAGAAGCTCTGAC+AGG | + | chr4_4:4895557-4895576 | Msa0665430:CDS | 45.0% |
| CCCATCGAGGGTAGTTATTT+GGG | - | chr4_4:4895591-4895610 | None:intergenic | 45.0% | |
| CCCAAATAACTACCCTCGAT+GGG | + | chr4_4:4895588-4895607 | Msa0665430:CDS | 45.0% | |
| TCCCATCGAGGGTAGTTATT+TGG | - | chr4_4:4895592-4895611 | None:intergenic | 45.0% | |
| AAATAACTACCCTCGATGGG+AGG | + | chr4_4:4895591-4895610 | Msa0665430:CDS | 45.0% | |
| !! | GACTAATGATGGTGTTGACG+GGG | - | chr4_4:4895628-4895647 | None:intergenic | 45.0% |
| !! | GGACTAATGATGGTGTTGAC+GGG | - | chr4_4:4895629-4895648 | None:intergenic | 45.0% |
| ! | AGAGGGTATGCCAATTCCTA+AGG | + | chr4_4:4895673-4895692 | Msa0665430:CDS | 45.0% |
| !! | CCCTTTTTGGAAGGTTCCTT+AGG | - | chr4_4:4895692-4895711 | None:intergenic | 45.0% |
| CTTACATCAGAGCAGAAGAC+CGG | + | chr4_4:4895752-4895771 | Msa0665430:CDS | 45.0% | |
| GACATCTTCGTAAACACCAG+TGG | + | chr4_4:4895790-4895809 | Msa0665430:exon | 45.0% | |
| ATCTTCGTAAACACCAGTGG+TGG | + | chr4_4:4895793-4895812 | Msa0665430:exon | 45.0% | |
| CATCTTCATATATGGCTGGG+AGG | - | chr4_4:4895821-4895840 | None:intergenic | 45.0% | |
| ATATGGTGAGGAGGGGTTGA+AGG | + | chr4_4:4893616-4893635 | Msa0665430:CDS | 50.0% | |
| TATGGTGAGGAGGGGTTGAA+GGG | + | chr4_4:4893617-4893636 | Msa0665430:CDS | 50.0% | |
| AGAAAATCCACCTGCACCTG+GGG | - | chr4_4:4893654-4893673 | None:intergenic | 50.0% | |
| CAGAAAATCCACCTGCACCT+GGG | - | chr4_4:4893655-4893674 | None:intergenic | 50.0% | |
| TCAGAAAATCCACCTGCACC+TGG | - | chr4_4:4893656-4893675 | None:intergenic | 50.0% | |
| !! | GGTGCAGGTGGATTTTCTGA+CGG | + | chr4_4:4893656-4893675 | Msa0665430:CDS | 50.0% |
| AAGACCATTTGGCGGTGGAA+TGG | + | chr4_4:4893757-4893776 | Msa0665430:CDS | 50.0% | |
| AGACCATTTGGCGGTGGAAT+GGG | + | chr4_4:4893758-4893777 | Msa0665430:CDS | 50.0% | |
| GCTTTCCGAGGGGAATGTTT+AGG | + | chr4_4:4893810-4893829 | Msa0665430:CDS | 50.0% | |
| TTTAGGAATTCGGCCGGTGA+AGG | + | chr4_4:4893851-4893870 | Msa0665430:CDS | 50.0% | |
| CACATTGGCAGATCCTTCAC+CGG | - | chr4_4:4893867-4893886 | None:intergenic | 50.0% | |
| CATTGTCTAGCCGATGCTGT+AGG | + | chr4_4:4894864-4894883 | Msa0665430:intron | 50.0% | |
| ! | TGAGTATCGCAGAACAGCAG+CGG | + | chr4_4:4895201-4895220 | Msa0665430:intron | 50.0% |
| GCCCAAATAACTACCCTCGA+TGG | + | chr4_4:4895587-4895606 | Msa0665430:CDS | 50.0% | |
| CGTAAGATTCCTCCCATCGA+GGG | - | chr4_4:4895603-4895622 | None:intergenic | 50.0% | |
| CCTCGATGGGAGGAATCTTA+CGG | + | chr4_4:4895601-4895620 | Msa0665430:CDS | 50.0% | |
| ATGGTGAGGAGGGGTTGAAG+GGG | + | chr4_4:4893618-4893637 | Msa0665430:CDS | 55.0% | |
| GAAAATCCACCTGCACCTGG+GGG | - | chr4_4:4893653-4893672 | None:intergenic | 55.0% | |
| !! | GCAGGTGGATTTTCTGACGG+CGG | + | chr4_4:4893659-4893678 | Msa0665430:CDS | 55.0% |
| ! | GGATTTTCTGACGGCGGTGA+TGG | + | chr4_4:4893665-4893684 | Msa0665430:CDS | 55.0% |
| !! | TTTTCTGACGGCGGTGATGG+TGG | + | chr4_4:4893668-4893687 | Msa0665430:CDS | 55.0% |
| ! | TTTCTGACGGCGGTGATGGT+GGG | + | chr4_4:4893669-4893688 | Msa0665430:CDS | 55.0% |
| !! | ATGGTGGGCCGACAATGTTC+CGG | + | chr4_4:4893684-4893703 | Msa0665430:CDS | 55.0% |
| CCGCACTTCTCGGATTGAAC+CGG | - | chr4_4:4893706-4893725 | None:intergenic | 55.0% | |
| CCGGTTCAATCCGAGAAGTG+CGG | + | chr4_4:4893703-4893722 | Msa0665430:CDS | 55.0% | |
| TCACCCATTCCACCGCCAAA+TGG | - | chr4_4:4893764-4893783 | None:intergenic | 55.0% | |
| TGGCGGTGGAATGGGTGATA+TGG | + | chr4_4:4893766-4893785 | Msa0665430:CDS | 55.0% | |
| GGCGGTGGAATGGGTGATAT+GGG | + | chr4_4:4893767-4893786 | Msa0665430:CDS | 55.0% | |
| GGTGGAATGGGTGATATGGG+TGG | + | chr4_4:4893770-4893789 | Msa0665430:CDS | 55.0% | |
| GGTGATATGGGTGGTCATCC+TGG | + | chr4_4:4893779-4893798 | Msa0665430:CDS | 55.0% | |
| !! | TGGTGCATCTGGCTTTCCGA+GGG | + | chr4_4:4893799-4893818 | Msa0665430:CDS | 55.0% |
| ATAGCAGCCCTACAGCACAG+CGG | - | chr4_4:4895239-4895258 | None:intergenic | 55.0% | |
| CCGTAAGATTCCTCCCATCG+AGG | - | chr4_4:4895604-4895623 | None:intergenic | 55.0% | |
| GGTGGTCATCCTGGTGCATC+TGG | + | chr4_4:4893788-4893807 | Msa0665430:CDS | 60.0% | |
| CTCGGAAAGCCAGATGCACC+AGG | - | chr4_4:4893800-4893819 | None:intergenic | 60.0% | |
| !! | CTGGTGCATCTGGCTTTCCG+AGG | + | chr4_4:4893798-4893817 | Msa0665430:CDS | 60.0% |
| !! | GGTGCATCTGGCTTTCCGAG+GGG | + | chr4_4:4893800-4893819 | Msa0665430:CDS | 60.0% |
| AATCCACCTGCACCTGGGGG+AGG | - | chr4_4:4893650-4893669 | None:intergenic | 65.0% | |
| !! | TGGCTGGGAGGTACCACCAC+TGG | - | chr4_4:4895809-4895828 | None:intergenic | 65.0% |
| AAGGGGCAGATGCCTCCCCC+AGG | + | chr4_4:4893635-4893654 | Msa0665430:CDS | 70.0% | |
| CAGATGCCTCCCCCAGGTGC+AGG | + | chr4_4:4893641-4893660 | Msa0665430:CDS | 70.0% | |
| ATGCCTCCCCCAGGTGCAGG+TGG | + | chr4_4:4893644-4893663 | Msa0665430:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4892342 | 4896128 | 4892342 | ID=Msa0665430;Name=Msa0665430 |
| chr4_4 | mRNA | 4892342 | 4896128 | 4892342 | ID=Msa0665430-mRNA-1;Parent=Msa0665430;Name=Msa0665430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=103|1|1|1|1|1|3|326|341 |
| chr4_4 | exon | 4892342 | 4892609 | 4892342 | ID=Msa0665430-mRNA-1:exon:1622;Parent=Msa0665430-mRNA-1 |
| chr4_4 | exon | 4893578 | 4893996 | 4893578 | ID=Msa0665430-mRNA-1:exon:1623;Parent=Msa0665430-mRNA-1 |
| chr4_4 | exon | 4895361 | 4896128 | 4895361 | ID=Msa0665430-mRNA-1:exon:1624;Parent=Msa0665430-mRNA-1 |
| chr4_4 | five_prime_UTR | 4892342 | 4892444 | 4892342 | ID=Msa0665430-mRNA-1:five_prime_utr;Parent=Msa0665430-mRNA-1 |
| chr4_4 | CDS | 4892445 | 4892609 | 4892445 | ID=Msa0665430-mRNA-1:cds;Parent=Msa0665430-mRNA-1 |
| chr4_4 | CDS | 4893578 | 4893996 | 4893578 | ID=Msa0665430-mRNA-1:cds;Parent=Msa0665430-mRNA-1 |
| chr4_4 | CDS | 4895361 | 4895802 | 4895361 | ID=Msa0665430-mRNA-1:cds;Parent=Msa0665430-mRNA-1 |
| chr4_4 | three_prime_UTR | 4895803 | 4896128 | 4895803 | ID=Msa0665430-mRNA-1:three_prime_utr;Parent=Msa0665430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
