AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0332640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332640 MtrunA17_Chr2g0315551 99.539 217 1 0 1 217 1 217 2.02e-160 441
Msa0332640 MtrunA17_Chr2g0319951 82.110 218 38 1 1 217 1 218 8.35e-128 359
Msa0332640 MtrunA17_Chr2g0283131 78.539 219 43 3 1 217 1 217 1.50e-125 353
Msa0332640 MtrunA17_Chr4g0046261 78.082 219 44 3 1 217 1 217 4.70e-125 352
Msa0332640 MtrunA17_Chr4g0040781 76.712 219 47 3 1 217 1 217 1.19e-124 351
Msa0332640 MtrunA17_Chr2g0325091 75.472 212 49 3 7 217 5 214 6.31e-117 332
Msa0332640 MtrunA17_Chr4g0032201 68.224 214 67 1 4 217 3 215 3.37e-109 312
Msa0332640 MtrunA17_Chr3g0112681 65.421 214 74 0 3 216 2 215 4.11e-105 301
Msa0332640 MtrunA17_Chr2g0276941 67.925 212 67 1 7 217 9 220 4.68e-103 296
Msa0332640 MtrunA17_Chr8g0381841 59.641 223 72 3 6 217 10 225 8.41e-93 271
Msa0332640 MtrunA17_Chr1g0174281 60.952 210 77 3 11 215 13 222 2.95e-92 269
Msa0332640 MtrunA17_Chr7g0231131 59.420 207 82 1 11 215 13 219 8.20e-91 266
Msa0332640 MtrunA17_Chr3g0123821 59.174 218 85 4 2 215 4 221 1.76e-90 265
Msa0332640 MtrunA17_Chr6g0482721 57.619 210 89 0 7 216 6 215 3.85e-86 254
Msa0332640 MtrunA17_Chr8g0346421 55.963 218 88 3 4 216 17 231 1.61e-83 248
Msa0332640 MtrunA17_Chr7g0275991 54.167 216 95 1 5 216 12 227 4.09e-82 244
Msa0332640 MtrunA17_Chr7g0214241 65.116 172 60 0 12 183 14 185 4.72e-81 241
Msa0332640 MtrunA17_Chr8g0351861 52.423 227 97 4 1 216 1 227 5.58e-80 238
Msa0332640 MtrunA17_Chr1g0189361 53.774 212 92 2 11 216 12 223 4.65e-78 233
Msa0332640 MtrunA17_Chr8g0392931 55.450 211 93 1 7 216 8 218 9.88e-78 232
Msa0332640 MtrunA17_Chr7g0234201 61.628 172 66 0 12 183 12 183 1.86e-76 229
Msa0332640 MtrunA17_Chr2g0290891 46.009 213 105 2 10 216 3 211 5.45e-64 197
Msa0332640 MtrunA17_Chr6g0458081 53.293 167 78 0 10 176 3 169 9.21e-62 191
Msa0332640 MtrunA17_Chr4g0055651 45.972 211 104 2 7 217 2 202 2.32e-60 187
Msa0332640 MtrunA17_Chr8g0335471 47.619 210 99 3 9 217 4 203 2.62e-59 185
Msa0332640 MtrunA17_Chr7g0250531 46.411 209 102 2 9 217 4 202 6.21e-59 184
Msa0332640 MtrunA17_Chr8g0349711 45.024 211 107 3 12 216 5 212 2.21e-58 183
Msa0332640 MtrunA17_Chr1g0182321 43.925 214 115 2 5 217 7 216 1.76e-55 176
Msa0332640 MtrunA17_Chr1g0212521 44.231 208 111 2 9 215 11 214 3.00e-55 175
Msa0332640 MtrunA17_Chr1g0182301 43.458 214 116 2 5 217 7 216 5.99e-55 174
Msa0332640 MtrunA17_Chr4g0030911 45.070 213 101 5 9 215 11 213 2.53e-54 172
Msa0332640 MtrunA17_Chr7g0263071 50.898 167 81 1 9 174 11 177 1.74e-53 171
Msa0332640 MtrunA17_Chr8g0349681 45.894 207 109 3 10 216 381 584 2.53e-53 180
Msa0332640 MtrunA17_Chr8g0349681 50.641 156 77 0 12 167 12 167 2.01e-49 169
Msa0332640 MtrunA17_Chr8g0349681 46.108 167 90 0 10 176 172 338 3.93e-49 169
Msa0332640 MtrunA17_Chr2g0276931 41.905 210 113 2 6 215 2 202 2.80e-53 170
Msa0332640 MtrunA17_Chr1g0199331 47.239 163 85 1 15 176 33 195 2.62e-50 162
Msa0332640 MtrunA17_Chr3g0109721 39.806 206 103 3 15 216 12 200 1.46e-48 157
Msa0332640 MtrunA17_Chr2g0327911 45.506 178 93 3 1 174 1 178 3.90e-48 157
Msa0332640 MtrunA17_Chr5g0433561 39.806 206 103 3 15 216 12 200 1.23e-47 155
Msa0332640 MtrunA17_Chr8g0384311 41.148 209 112 5 9 215 9 208 1.17e-46 153
Msa0332640 MtrunA17_Chr7g0265001 44.498 209 107 4 10 216 13 214 4.82e-46 152
Msa0332640 MtrunA17_Chr1g0159481 45.833 168 88 3 9 174 13 179 5.30e-45 149
Msa0332640 MtrunA17_Chr1g0180291 43.269 208 108 5 10 215 11 210 1.34e-44 148
Msa0332640 MtrunA17_Chr1g0197331 41.589 214 113 5 6 216 8 212 1.37e-44 148
Msa0332640 MtrunA17_Chr8g0390561 41.250 160 94 0 15 174 11 170 1.86e-43 144
Msa0332640 MtrunA17_Chr3g0130271 40.566 212 110 8 9 215 8 208 4.35e-43 144
Msa0332640 MtrunA17_Chr5g0400131 37.580 157 98 0 14 170 10 166 1.89e-40 137
Msa0332640 MtrunA17_Chr4g0055081 36.943 157 99 0 14 170 10 166 1.48e-39 135
Msa0332640 MtrunA17_Chr3g0123971 35.669 157 101 0 14 170 10 166 1.98e-39 134
Msa0332640 MtrunA17_Chr8g0382221 35.669 157 101 0 14 170 10 166 2.24e-39 134
Msa0332640 MtrunA17_Chr6g0466301 38.788 165 94 3 13 170 8 172 6.94e-36 125
Msa0332640 MtrunA17_Chr6g0465491 38.788 165 94 3 13 170 8 172 6.94e-36 125
Msa0332640 MtrunA17_Chr8g0383261 34.848 198 112 4 13 193 12 209 1.05e-35 125
Msa0332640 MtrunA17_Chr4g0034871 33.971 209 119 7 13 214 8 204 1.01e-34 122
Msa0332640 MtrunA17_Chr2g0331691 33.971 209 120 5 13 214 10 207 1.59e-34 122
Msa0332640 MtrunA17_Chr1g0201121 38.889 162 92 4 13 167 8 169 5.65e-34 120
Msa0332640 MtrunA17_Chr4g0004661 33.493 209 121 5 13 214 64 261 1.03e-33 121
Msa0332640 MtrunA17_Chr6g0465471 32.143 196 109 6 28 214 5 185 3.88e-25 97.8
Msa0332640 MtrunA17_Chr6g0466161 31.633 196 110 6 28 214 5 185 1.71e-24 96.3
Msa0332640 MtrunA17_Chr3g0138121 32.468 154 101 2 14 167 14 164 1.42e-23 94.0
Msa0332640 MtrunA17_Chr3g0138101 32.468 154 101 2 14 167 14 164 1.52e-23 94.0
Msa0332640 MtrunA17_Chr3g0138111 32.468 154 101 2 14 167 14 164 1.70e-23 94.0
Msa0332640 MtrunA17_Chr3g0117931 30.387 181 112 5 13 181 8 186 5.61e-21 87.0
Msa0332640 MtrunA17_Chr4g0046211 37.500 120 72 3 13 131 6 123 1.66e-20 84.0
Msa0332640 MtrunA17_Chr4g0037021 38.333 120 71 3 13 131 6 123 6.12e-20 84.0
Msa0332640 MtrunA17_Chr6g0486041 36.364 121 74 3 13 132 6 124 2.86e-19 82.4
Msa0332640 MtrunA17_Chr2g0325101 36.667 120 73 3 13 131 6 123 3.13e-19 82.0
Msa0332640 MtrunA17_Chr5g0405791 35.833 120 74 3 13 131 6 123 7.38e-19 80.9
Msa0332640 MtrunA17_Chr8g0371501 35.833 120 74 3 13 131 6 123 2.72e-18 79.3
Msa0332640 MtrunA17_Chr6g0466431 34.343 99 56 1 13 111 8 97 7.90e-17 73.2
Msa0332640 MtrunA17_Chr6g0465611 34.343 99 56 1 13 111 8 97 7.90e-17 73.2
Msa0332640 MtrunA17_Chr1g0178291 33.526 173 105 5 10 182 428 590 3.39e-15 73.9
Msa0332640 MtrunA17_Chr5g0443631 28.415 183 118 5 3 177 95 272 2.43e-14 70.1
Msa0332640 MtrunA17_Chr1g0182951 60.465 43 17 0 122 164 1 43 1.93e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332640 AT1G16920.1 88.018 217 25 1 1 217 1 216 1.77e-141 394
Msa0332640 AT5G45750.1 85.714 217 30 1 1 217 1 216 2.05e-137 384
Msa0332640 AT4G18800.1 83.410 217 33 2 1 217 1 214 2.41e-134 376
Msa0332640 AT1G06400.1 78.341 217 46 1 1 217 1 216 9.62e-128 359
Msa0332640 AT5G60860.1 76.256 219 48 3 1 217 1 217 3.83e-124 350
Msa0332640 AT3G15060.1 75.799 219 49 3 1 217 1 217 3.79e-123 348
Msa0332640 AT4G18430.1 72.936 218 55 2 1 216 1 216 4.76e-121 342
Msa0332640 AT1G28550.1 71.689 219 59 2 1 217 1 218 2.47e-120 340
Msa0332640 AT2G33870.1 71.233 219 60 2 1 217 1 218 1.38e-117 333
Msa0332640 AT1G07410.1 68.545 213 65 2 5 217 4 214 2.39e-107 308
Msa0332640 AT1G09630.1 68.692 214 65 2 5 217 4 216 2.99e-107 307
Msa0332640 AT5G59150.1 67.130 216 68 2 4 217 3 217 1.99e-102 295
Msa0332640 AT3G46830.1 67.130 216 68 2 4 217 3 217 1.70e-101 293
Msa0332640 AT3G46830.2 67.130 216 68 2 4 217 3 217 1.70e-101 293
Msa0332640 AT5G47960.1 63.810 210 73 1 11 217 13 222 1.43e-94 276
Msa0332640 AT3G12160.1 60.577 208 78 2 11 215 13 219 1.98e-92 270
Msa0332640 AT4G39990.1 60.185 216 70 3 11 217 15 223 7.73e-91 266
Msa0332640 AT5G65270.1 61.033 213 76 3 11 217 15 226 1.91e-89 263
Msa0332640 AT5G47520.1 56.757 222 90 4 1 217 1 221 2.10e-84 250
Msa0332640 AT2G43130.1 55.140 214 91 3 6 216 2 213 7.75e-81 240
Msa0332640 AT2G31680.1 54.839 217 80 3 11 217 10 218 4.05e-79 236
Msa0332640 AT1G18200.1 51.982 227 97 2 1 215 1 227 9.09e-78 233
Msa0332640 AT1G05810.1 55.814 215 80 4 11 217 10 217 9.10e-78 233
Msa0332640 AT3G07410.1 61.453 179 69 0 3 181 2 180 2.02e-77 232
Msa0332640 AT1G05810.2 55.814 215 80 4 11 217 56 263 2.68e-77 233
Msa0332640 AT1G73640.1 52.814 231 93 3 1 215 1 231 3.15e-77 232
Msa0332640 AT1G01200.1 54.460 213 88 4 11 216 26 236 7.12e-75 226
Msa0332640 AT5G59150.2 61.818 165 60 2 55 217 3 166 1.31e-67 205
Msa0332640 AT4G17170.1 46.009 213 105 2 10 216 3 211 9.35e-64 197
Msa0332640 AT4G17160.1 47.343 207 103 2 10 215 3 204 1.69e-62 194
Msa0332640 AT4G35860.1 53.293 167 78 0 10 176 3 169 1.43e-61 191
Msa0332640 AT1G02130.1 47.170 212 101 3 7 217 2 203 4.63e-60 187
Msa0332640 AT5G47200.1 45.972 211 104 2 7 217 2 202 1.03e-58 184
Msa0332640 AT4G17530.1 45.498 211 105 2 7 217 2 202 1.34e-58 184
Msa0332640 AT3G11730.1 43.750 208 110 1 8 215 3 203 2.09e-57 181
Msa0332640 AT5G03520.1 45.161 217 113 2 1 216 3 214 2.42e-55 176
Msa0332640 AT3G46060.2 51.534 163 78 1 9 170 11 173 2.98e-53 170
Msa0332640 AT3G46060.3 51.534 163 78 1 9 170 11 173 2.98e-53 170
Msa0332640 AT3G46060.1 51.534 163 78 1 9 170 11 173 2.98e-53 170
Msa0332640 AT3G09900.1 42.857 217 120 2 1 216 3 216 7.30e-53 169
Msa0332640 AT5G59840.1 50.299 167 82 1 9 174 11 177 1.09e-52 169
Msa0332640 AT5G45130.1 45.109 184 95 1 15 198 12 189 3.98e-52 167
Msa0332640 AT3G53610.2 49.701 167 83 1 9 174 11 177 6.51e-52 167
Msa0332640 AT3G53610.3 49.701 167 83 1 9 174 11 177 6.51e-52 167
Msa0332640 AT3G53610.1 49.701 167 83 1 9 174 11 177 6.51e-52 167
Msa0332640 AT4G19640.1 46.626 163 87 0 15 177 12 174 2.69e-51 165
Msa0332640 AT5G45130.2 45.055 182 94 1 17 198 22 197 4.21e-51 165
Msa0332640 AT1G43890.3 45.545 202 102 5 1 196 1 200 1.05e-50 164
Msa0332640 AT1G43890.1 45.545 202 102 5 1 196 1 200 1.05e-50 164
Msa0332640 AT1G43890.2 45.545 202 102 5 1 196 1 200 1.05e-50 164
Msa0332640 AT3G54840.1 47.853 163 84 1 15 176 35 197 1.20e-49 160
Msa0332640 AT3G54840.3 47.531 162 84 1 16 176 2 163 3.18e-49 159
Msa0332640 AT3G54840.2 49.351 154 77 1 15 167 35 188 3.58e-48 157
Msa0332640 AT5G03530.2 43.119 218 114 5 1 216 1 210 1.02e-46 154
Msa0332640 AT5G03530.1 43.119 218 114 5 1 216 1 210 1.02e-46 154
Msa0332640 AT4G35860.2 51.639 122 59 0 55 176 2 123 2.56e-42 141
Msa0332640 AT2G22290.1 36.306 157 100 0 14 170 10 166 3.71e-39 134
Msa0332640 AT5G03520.2 41.765 170 93 2 48 216 40 204 1.92e-38 132
Msa0332640 AT5G10260.1 35.669 157 101 0 14 170 10 166 2.47e-38 132
Msa0332640 AT4G39890.1 36.709 158 99 1 14 170 10 167 3.16e-38 132
Msa0332640 AT4G19640.3 46.565 131 70 0 15 145 12 142 3.85e-38 131
Msa0332640 AT2G44610.1 36.306 157 100 0 14 170 10 166 8.41e-38 130
Msa0332640 AT4G19640.2 47.200 125 66 0 15 139 12 136 1.39e-37 128
Msa0332640 AT3G09910.3 41.414 198 108 4 1 196 1 192 3.62e-37 129
Msa0332640 AT3G09910.1 41.414 198 108 4 1 196 1 192 3.62e-37 129
Msa0332640 AT3G09910.2 41.414 198 108 4 1 196 1 192 3.62e-37 129
Msa0332640 AT1G22740.1 40.123 162 90 3 13 167 8 169 3.77e-37 129
Msa0332640 AT5G64990.1 35.404 161 104 0 14 174 8 168 5.19e-37 129
Msa0332640 AT5G46025.1 58.491 106 43 1 75 179 6 111 9.88e-37 125
Msa0332640 AT3G09910.5 41.026 195 107 4 1 188 1 194 5.55e-36 125
Msa0332640 AT3G09910.4 41.026 195 107 4 1 188 1 194 5.55e-36 125
Msa0332640 AT3G18820.1 35.450 189 107 4 13 194 8 188 5.71e-35 123
Msa0332640 AT2G21880.1 38.788 165 94 3 13 170 9 173 7.61e-35 123
Msa0332640 AT1G52280.1 38.095 168 96 4 13 173 8 174 1.76e-34 122
Msa0332640 AT5G64990.2 33.929 168 104 1 14 174 8 175 2.74e-34 122
Msa0332640 AT3G16100.1 37.654 162 94 3 13 167 8 169 3.80e-33 119
Msa0332640 AT1G49300.2 36.527 167 99 3 13 172 8 174 8.04e-33 118
Msa0332640 AT1G49300.1 36.527 167 99 3 13 172 8 174 8.04e-33 118
Msa0332640 AT4G09720.1 35.758 165 99 2 13 170 8 172 2.04e-32 117
Msa0332640 AT5G39620.1 34.211 190 114 4 14 195 6 192 1.15e-31 115
Msa0332640 AT4G09720.4 34.118 170 100 2 13 170 8 177 4.41e-31 113
Msa0332640 AT4G09720.3 32.955 176 100 2 13 170 8 183 6.36e-30 110
Msa0332640 AT5G55080.1 35.256 156 94 3 14 167 14 164 2.31e-27 104
Msa0332640 AT2G21880.4 35.811 148 88 3 30 170 1 148 1.13e-25 99.0
Msa0332640 AT2G21880.3 35.811 148 88 3 30 170 1 148 1.13e-25 99.0
Msa0332640 AT2G21880.2 33.939 165 94 4 13 170 9 165 6.10e-25 97.4
Msa0332640 AT5G20020.1 32.468 154 101 2 14 167 14 164 2.09e-23 94.0
Msa0332640 AT5G55190.1 32.468 154 101 2 14 167 14 164 2.16e-23 94.0
Msa0332640 AT5G20010.1 32.468 154 101 2 14 167 14 164 2.18e-23 94.0
Msa0332640 AT4G08190.1 63.636 66 21 1 102 167 65 127 8.88e-22 87.0
Msa0332640 AT2G44690.1 32.222 180 108 5 13 180 18 195 1.32e-21 89.0
Msa0332640 AT4G09720.6 34.815 135 81 2 40 167 1 135 1.45e-21 87.8
Msa0332640 AT4G09720.5 34.815 135 81 2 40 167 1 135 1.45e-21 87.8
Msa0332640 AT4G09720.2 34.815 135 81 2 40 167 1 135 1.45e-21 87.8
Msa0332640 AT4G35020.1 34.132 167 96 5 13 167 6 170 1.61e-20 85.9
Msa0332640 AT4G35020.2 34.132 167 96 5 13 167 6 170 1.61e-20 85.9
Msa0332640 AT4G35020.3 34.132 167 96 5 13 167 6 170 1.61e-20 85.9
Msa0332640 AT4G28950.1 29.121 182 117 5 13 184 6 185 7.91e-20 84.3
Msa0332640 AT3G48040.1 29.949 197 120 6 13 197 8 198 1.94e-19 83.2
Msa0332640 AT1G75840.1 31.737 167 100 5 13 167 6 170 5.33e-19 81.6
Msa0332640 AT5G45970.1 37.500 120 72 3 13 131 6 123 7.82e-19 81.3
Msa0332640 AT1G20090.1 35.833 120 74 3 13 131 5 122 9.77e-19 80.9
Msa0332640 AT5G62880.1 29.545 176 110 5 13 176 8 181 4.44e-18 79.7
Msa0332640 AT2G17800.2 35.833 120 74 3 13 131 6 123 5.02e-18 79.0
Msa0332640 AT2G17800.1 35.833 120 74 3 13 131 6 123 5.02e-18 79.0
Msa0332640 AT4G35950.1 35.833 120 74 3 13 131 6 123 5.74e-18 79.0
Msa0332640 AT3G51300.1 36.441 118 72 3 15 131 8 123 5.99e-18 79.0
Msa0332640 AT4G35020.4 38.596 114 67 3 15 127 8 119 1.63e-17 76.6
Msa0332640 AT4G35020.5 38.596 114 67 3 15 127 8 119 1.63e-17 76.6
Msa0332640 AT3G48040.2 31.210 157 94 5 13 157 8 162 2.62e-17 76.6
Msa0332640 AT5G62880.2 35.000 120 75 3 13 131 8 125 4.17e-17 76.6

Find 59 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAACACCAATGGTGGATT+TGG 0.236269 2_4:-49756993 None:intergenic
TGTTGATTCTAAAGTTATTA+AGG 0.259169 2_4:+49757036 Msa0332640:CDS
TGGAAGTAATTAATTCATTA+AGG 0.261287 2_4:+49760728 Msa0332640:three_prime_UTR
GAAAGAATCACTTTATTTCA+TGG 0.263251 2_4:+49760257 Msa0332640:CDS
GATTGGAAACATAATTCATT+TGG 0.342285 2_4:+49760474 Msa0332640:three_prime_UTR
CATGTTTCAGTAGGAGCTGC+TGG 0.345152 2_4:+49760625 Msa0332640:three_prime_UTR
ATTTGTATCTCTCTCACTTT+CGG 0.348472 2_4:-49760528 None:intergenic
GCTGTAGAGGGTGCTGAAAA+TGG 0.383578 2_4:+49760363 Msa0332640:CDS
GAAATAAAGTGATTCTTTCT+CGG 0.391175 2_4:-49760253 None:intergenic
AAGTTATTAAGGCTCAGATC+TGG 0.406315 2_4:+49757047 Msa0332640:CDS
GTTGCTGCTCAAGCTAAGAT+TGG 0.425537 2_4:+49760457 Msa0332640:exon
AACATTGTTGTGATGCTTGT+TGG 0.427166 2_4:+49760171 Msa0332640:CDS
TTTCATGGAAACCTCAGCTC+TGG 0.442500 2_4:+49760272 Msa0332640:CDS
CGATCAGAACTACCTTGAAT+AGG 0.446974 2_4:-49756904 None:intergenic
GGTGAAACGAGAGAGAAGAT+TGG 0.454307 2_4:-49756948 None:intergenic
CGACTATGACTACCTATTCA+AGG 0.457570 2_4:+49756892 Msa0332640:CDS
ATAATTCATTTGGTTGCTAT+CGG 0.460679 2_4:+49760484 Msa0332640:three_prime_UTR
CAGCTTTCTTGCTAACAATA+CGG 0.494643 2_4:-49760344 None:intergenic
CTTCCCATCTTCAGTTGATA+CGG 0.496302 2_4:-49760223 None:intergenic
ATTTGAAGACTTCCAGTGGT+TGG 0.500985 2_4:-49760804 None:intergenic
CTGATCGGCGACTCCGGCGT+TGG 0.508206 2_4:+49756920 Msa0332640:CDS
GCTTACTATCGTGGGGCAGT+TGG 0.519994 2_4:+49760060 Msa0332640:CDS
ATGTTTCAGTAGGAGCTGCT+GGG 0.520718 2_4:+49760626 Msa0332640:three_prime_UTR
TCAAAGAAGACGAAGAAGAA+TGG 0.528390 2_4:+49756850 Msa0332640:exon
TCTGCAAATTGATTCAAGCT+TGG 0.529602 2_4:+49760708 Msa0332640:three_prime_UTR
GACAAGTTTCATGTTTCAGT+AGG 0.531782 2_4:+49760616 Msa0332640:three_prime_UTR
CTTCAGTTGATACGGCTACA+AGG 0.532280 2_4:-49760215 None:intergenic
TAATAGAATCATCCAACCAC+TGG 0.533498 2_4:+49760792 Msa0332640:three_prime_UTR
GTAGTTCTGATCGGCGACTC+CGG 0.534376 2_4:+49756914 Msa0332640:CDS
AGTTATTAAGGCTCAGATCT+GGG 0.536509 2_4:+49757048 Msa0332640:CDS
GGGATACTGCTGGTCAAGAA+AGG 0.537036 2_4:+49757068 Msa0332640:CDS
GTTTCAGCTTTGAAGAGAGT+TGG 0.538571 2_4:+49760435 Msa0332640:CDS
AACAAGCATCACAACAATGT+TGG 0.538592 2_4:-49760169 None:intergenic
AGATGTGAAGAGAAAGTGAA+AGG 0.538673 2_4:-49756787 None:intergenic
CTTGAATCCAAATCCACCAT+TGG 0.540714 2_4:+49756986 Msa0332640:CDS
AACGCGTCTGTGCCAGCCAA+AGG 0.543390 2_4:+49760387 Msa0332640:CDS
ACGATAGTAAGCACTTGTAA+TGG 0.555075 2_4:-49760049 None:intergenic
GTAGCCGTATCAACTGAAGA+TGG 0.561123 2_4:+49760219 Msa0332640:CDS
AGAAGACGAAGAAGAATGGC+GGG 0.571136 2_4:+49756854 Msa0332640:exon
GCTCAGATCTGGGATACTGC+TGG 0.571910 2_4:+49757058 Msa0332640:CDS
ATTACAAGTGCTTACTATCG+TGG 0.574326 2_4:+49760051 Msa0332640:CDS
TTACAAGTGCTTACTATCGT+GGG 0.574573 2_4:+49760052 Msa0332640:CDS
CATGGAAACCTCAGCTCTGG+AGG 0.574684 2_4:+49760275 Msa0332640:CDS
AGCGAATTCAACACCAATGG+TGG 0.577629 2_4:-49756999 None:intergenic
CTATTCAAGGTAGTTCTGAT+CGG 0.585029 2_4:+49756905 Msa0332640:CDS
TGTTAGCAAGAAAGCTGTAG+AGG 0.588403 2_4:+49760350 Msa0332640:CDS
CGACGTTCTCAAATGTTGCA+TGG 0.590652 2_4:-49760110 None:intergenic
TAGCCGTATCAACTGAAGAT+GGG 0.593299 2_4:+49760220 Msa0332640:CDS
GTTAGCAAGAAAGCTGTAGA+GGG 0.598414 2_4:+49760351 Msa0332640:CDS
AAGATTGGATTTGCCAACGC+CGG 0.601803 2_4:-49756933 None:intergenic
CATTTGAGAACGTCGACAGA+TGG 0.604678 2_4:+49760118 Msa0332640:CDS
TGTTTCAGTAGGAGCTGCTG+GGG 0.605790 2_4:+49760627 Msa0332640:three_prime_UTR
CCTTATTTGAAGACTTCCAG+TGG 0.618831 2_4:-49760808 None:intergenic
GTTAGTAGCCTCCAGAGCTG+AGG 0.627901 2_4:-49760283 None:intergenic
AAGAAGACGAAGAAGAATGG+CGG 0.648459 2_4:+49756853 Msa0332640:exon
TTGATACGGCTACAAGGTGA+CGG 0.654516 2_4:-49760209 None:intergenic
TACAAGTGCTTACTATCGTG+GGG 0.673719 2_4:+49760053 Msa0332640:CDS
AGTAGCGAATTCAACACCAA+TGG 0.690637 2_4:-49757002 None:intergenic
CAACAATGTTGGAATCTGTG+TGG 0.736098 2_4:-49760158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATAATTCTATTAG+CGG + chr2_4:49757424-49757443 Msa0332640:intron 10.0%
!!! TTTATTTTTTATTTTTGCTA+AGG - chr2_4:49757747-49757766 None:intergenic 10.0%
!!! TCTAAAATATGATTTAATTT+TGG + chr2_4:49757776-49757795 Msa0332640:intron 10.0%
!! AAGAATTTATATTACAAAAT+TGG + chr2_4:49758532-49758551 Msa0332640:intron 10.0%
!!! TTGTTTTATATATTCTATGA+TGG + chr2_4:49758151-49758170 Msa0332640:intron 15.0%
!! AATATAAATTCTTAAGAGTT+GGG - chr2_4:49758525-49758544 None:intergenic 15.0%
!! TAATATAAATTCTTAAGAGT+TGG - chr2_4:49758526-49758545 None:intergenic 15.0%
!! CTAATCAAATATTTGAAAAT+AGG - chr2_4:49758579-49758598 None:intergenic 15.0%
!! TAAATAAAAACAATGTTACT+CGG - chr2_4:49759661-49759680 None:intergenic 15.0%
!!! TGTTGATTCTAAAGTTATTA+AGG + chr2_4:49757036-49757055 Msa0332640:CDS 20.0%
!!! TCAGAGATCTTTAATTTAAA+TGG + chr2_4:49757320-49757339 Msa0332640:intron 20.0%
!!! ATGAAGAAGAAATGAATTTT+AGG + chr2_4:49757398-49757417 Msa0332640:intron 20.0%
!! TTTGTTTAAAAAAGATCAAG+AGG + chr2_4:49757580-49757599 Msa0332640:intron 20.0%
!!! TTTTTGCTAAGGAAAATTTA+GGG - chr2_4:49757736-49757755 None:intergenic 20.0%
!!! ATTTTTGCTAAGGAAAATTT+AGG - chr2_4:49757737-49757756 None:intergenic 20.0%
!! AAGGAATTACAAAAAACTAA+AGG + chr2_4:49757828-49757847 Msa0332640:intron 20.0%
!! AGGAATTACAAAAAACTAAA+GGG + chr2_4:49757829-49757848 Msa0332640:intron 20.0%
!! TCTATAAAAATTTCAAAAGC+TGG - chr2_4:49757870-49757889 None:intergenic 20.0%
!! TAATAATAACTAAAGCCTAA+AGG - chr2_4:49757958-49757977 None:intergenic 20.0%
!!! TATACTTCAATTTTTTTGAC+TGG + chr2_4:49757986-49758005 Msa0332640:intron 20.0%
!! AATTTATACTAAATAGCGTA+TGG + chr2_4:49758407-49758426 Msa0332640:intron 20.0%
!!! AGAAATGTTTTTATTTTCAC+TGG - chr2_4:49758694-49758713 None:intergenic 20.0%
!!! TTTTGAAAGAAAAAAGTTGA+TGG - chr2_4:49759123-49759142 None:intergenic 20.0%
!! TGATTAAAAAACCAGAATTA+TGG + chr2_4:49759435-49759454 Msa0332640:intron 20.0%
!! GATTAAAAAACCAGAATTAT+GGG + chr2_4:49759436-49759455 Msa0332640:intron 20.0%
!! ATTAAAAAACCAGAATTATG+GGG + chr2_4:49759437-49759456 Msa0332640:intron 20.0%
!!! AGATTTTTACTACTGATAAT+TGG - chr2_4:49759490-49759509 None:intergenic 20.0%
!! TTATCAGTAGTAAAAATCTA+AGG + chr2_4:49759491-49759510 Msa0332640:intron 20.0%
!!! AGTTCTAATACTAATAATAG+GGG - chr2_4:49759542-49759561 None:intergenic 20.0%
!!! GAGTTCTAATACTAATAATA+GGG - chr2_4:49759543-49759562 None:intergenic 20.0%
!!! AGAGTTCTAATACTAATAAT+AGG - chr2_4:49759544-49759563 None:intergenic 20.0%
!!! AAGTTCTAATACTAACAATT+GGG - chr2_4:49759604-49759623 None:intergenic 20.0%
!!! AAAGTTCTAATACTAACAAT+TGG - chr2_4:49759605-49759624 None:intergenic 20.0%
!! TTGTTAGTATTAGAACTTTA+AGG + chr2_4:49759606-49759625 Msa0332640:intron 20.0%
!! AAATAAAAACAATGTTACTC+GGG - chr2_4:49759660-49759679 None:intergenic 20.0%
!!! GTAACATTGTTTTTATTTAG+CGG + chr2_4:49759662-49759681 Msa0332640:intron 20.0%
!! TTATCAAACTTACAAATGAT+AGG + chr2_4:49759702-49759721 Msa0332640:intron 20.0%
!! TGGAAGTAATTAATTCATTA+AGG + chr2_4:49760728-49760747 Msa0332640:three_prime_UTR 20.0%
!! CATTTCTACATTTTGCTTAA+TGG + chr2_4:49757123-49757142 Msa0332640:intron 25.0%
! ATTTAAATGGTTAAGTGATG+TGG + chr2_4:49757333-49757352 Msa0332640:intron 25.0%
!! TAAGGAAAATTTAGGGTAAA+GGG - chr2_4:49757729-49757748 None:intergenic 25.0%
!! TGGCAAATACCAATTATTTT+AGG + chr2_4:49757796-49757815 Msa0332640:intron 25.0%
!!! GGCAAATACCAATTATTTTA+GGG + chr2_4:49757797-49757816 Msa0332640:intron 25.0%
!!! ATGTCTTATTTAAGAACTGT+TGG + chr2_4:49758174-49758193 Msa0332640:intron 25.0%
!!! TGTCTTATTTAAGAACTGTT+GGG + chr2_4:49758175-49758194 Msa0332640:intron 25.0%
! TATAAATTGTTGTCAAACAG+TGG - chr2_4:49758395-49758414 None:intergenic 25.0%
!! TAGCTGCTATTTAACAATAT+TGG + chr2_4:49758486-49758505 Msa0332640:intron 25.0%
!! TTCTCACATTTTCTTATAGA+AGG + chr2_4:49758619-49758638 Msa0332640:intron 25.0%
! ATGGTTAATGATATTGATGT+GGG + chr2_4:49758937-49758956 Msa0332640:intron 25.0%
! AATATGTAATGAAAGGAACA+TGG - chr2_4:49759015-49759034 None:intergenic 25.0%
! ACACTAGTGTAGTAATATAT+TGG + chr2_4:49759081-49759100 Msa0332640:intron 25.0%
! GAAGATAATGTAAACTTTGT+TGG - chr2_4:49759322-49759341 None:intergenic 25.0%
! TATTGTTCAATTACTCTTCA+AGG - chr2_4:49759363-49759382 None:intergenic 25.0%
!!! TAACTTGTATTTTTGAGCAA+AGG + chr2_4:49759411-49759430 Msa0332640:intron 25.0%
!! AGTTCTAATACTAACAATTG+GGG - chr2_4:49759603-49759622 None:intergenic 25.0%
! AAACTTACAAATGATAGGTA+TGG + chr2_4:49759707-49759726 Msa0332640:intron 25.0%
! ATCTGTAATCAAACTTACAA+AGG + chr2_4:49759791-49759810 Msa0332640:intron 25.0%
! TAATCAAACTTACAAAGGAT+AGG + chr2_4:49759796-49759815 Msa0332640:intron 25.0%
! TTACAAATCAATCGTAACAA+TGG - chr2_4:49759949-49759968 None:intergenic 25.0%
! CTAAAGTCAGTTACAAAATT+TGG - chr2_4:49759979-49759998 None:intergenic 25.0%
! GAAATAAAGTGATTCTTTCT+CGG - chr2_4:49760256-49760275 None:intergenic 25.0%
!! GAAAGAATCACTTTATTTCA+TGG + chr2_4:49760257-49760276 Msa0332640:CDS 25.0%
! GATTGGAAACATAATTCATT+TGG + chr2_4:49760474-49760493 Msa0332640:three_prime_UTR 25.0%
! ATAATTCATTTGGTTGCTAT+CGG + chr2_4:49760484-49760503 Msa0332640:three_prime_UTR 25.0%
! TTCAAGATTGAACTCGTTTT+TGG - chr2_4:49756972-49756991 None:intergenic 30.0%
! CTAAGGAAAATTTAGGGTAA+AGG - chr2_4:49757730-49757749 None:intergenic 30.0%
!!! TACCAATTATTTTAGGGCAT+TGG + chr2_4:49757803-49757822 Msa0332640:intron 30.0%
AACCAATGCCCTAAAATAAT+TGG - chr2_4:49757808-49757827 None:intergenic 30.0%
!!! TTATTTTAGGGCATTGGTTA+AGG + chr2_4:49757809-49757828 Msa0332640:intron 30.0%
! TTTCTAATTCTTGTTTGACC+TGG + chr2_4:49757922-49757941 Msa0332640:intron 30.0%
! TATGTTTAGAGTCCCATATT+TGG + chr2_4:49758219-49758238 Msa0332640:intron 30.0%
!!! CTTACAAGCTAGTTTTGTAA+GGG + chr2_4:49758288-49758307 Msa0332640:intron 30.0%
! CATTTTCTTATAGAAGGCTA+TGG + chr2_4:49758625-49758644 Msa0332640:intron 30.0%
ATCACACTCTTTCGATATTT+AGG + chr2_4:49758759-49758778 Msa0332640:intron 30.0%
TCACACTCTTTCGATATTTA+GGG + chr2_4:49758760-49758779 Msa0332640:intron 30.0%
!! AGTTTTCCATTTGGAATAGA+GGG - chr2_4:49758902-49758921 None:intergenic 30.0%
!! TAGTTTTCCATTTGGAATAG+AGG - chr2_4:49758903-49758922 None:intergenic 30.0%
! CAAAAGAGTAGTTTTCCATT+TGG - chr2_4:49758911-49758930 None:intergenic 30.0%
GATGGTTAATGATATTGATG+TGG + chr2_4:49758936-49758955 Msa0332640:intron 30.0%
TGATATTGATGTGGGTTTAT+AGG + chr2_4:49758945-49758964 Msa0332640:intron 30.0%
GGAACATGGAAAATTATAAC+TGG - chr2_4:49759001-49759020 None:intergenic 30.0%
TGGGATGAATATGTAATGAA+AGG - chr2_4:49759022-49759041 None:intergenic 30.0%
! ATGGGGATATTTGTTTCTTT+CGG - chr2_4:49759208-49759227 None:intergenic 30.0%
GTAGTTAATTCTTACTAGCA+GGG - chr2_4:49759240-49759259 None:intergenic 30.0%
AGTAGTTAATTCTTACTAGC+AGG - chr2_4:49759241-49759260 None:intergenic 30.0%
AAACTTACAAAGGATAGGTA+TGG + chr2_4:49759801-49759820 Msa0332640:intron 30.0%
! AAGATCTATTTTCTCTCCTT+TGG - chr2_4:49760406-49760425 None:intergenic 30.0%
ATTTGTATCTCTCTCACTTT+CGG - chr2_4:49760531-49760550 None:intergenic 30.0%
! TTTATTTGTGCACTGTTTTG+TGG + chr2_4:49760753-49760772 Msa0332640:three_prime_UTR 30.0%
AGATGTGAAGAGAAAGTGAA+AGG - chr2_4:49756790-49756809 None:intergenic 35.0%
TCAAAGAAGACGAAGAAGAA+TGG + chr2_4:49756850-49756869 Msa0332640:exon 35.0%
!! CTATTCAAGGTAGTTCTGAT+CGG + chr2_4:49756905-49756924 Msa0332640:CDS 35.0%
AAGTTATTAAGGCTCAGATC+TGG + chr2_4:49757047-49757066 Msa0332640:CDS 35.0%
AGTTATTAAGGCTCAGATCT+GGG + chr2_4:49757048-49757067 Msa0332640:CDS 35.0%
ACATCAGCACTACAAACAAA+TGG - chr2_4:49757279-49757298 None:intergenic 35.0%
! GAATTCAGTGTTGTGTCTTT+TGG + chr2_4:49757451-49757470 Msa0332640:intron 35.0%
TCCATAGTAGCAGTTGAATT+TGG + chr2_4:49757500-49757519 Msa0332640:intron 35.0%
TCCAAATTCAACTGCTACTA+TGG - chr2_4:49757504-49757523 None:intergenic 35.0%
TAGTAGCAGTTGAATTTGGA+CGG + chr2_4:49757504-49757523 Msa0332640:intron 35.0%
TTTACCATAGATCGAGTCTT+TGG - chr2_4:49757651-49757670 None:intergenic 35.0%
TCGATCTATGGTAAAAAGAC+AGG + chr2_4:49757656-49757675 Msa0332640:intron 35.0%
GTCTAATCTTCAGTTGAACT+TGG + chr2_4:49758016-49758035 Msa0332640:intron 35.0%
ATGAGGCTTATGCATGAAAT+AGG - chr2_4:49758097-49758116 None:intergenic 35.0%
AACCAAGCAAGTTCAAAATG+AGG - chr2_4:49758114-49758133 None:intergenic 35.0%
!! CATTTTGAACTTGCTTGGTT+TGG + chr2_4:49758114-49758133 Msa0332640:intron 35.0%
ACCTTCTCTCAACCAAATAT+GGG - chr2_4:49758234-49758253 None:intergenic 35.0%
TGGATATGTGCTCATTAGTT+GGG + chr2_4:49758255-49758274 Msa0332640:intron 35.0%
! CCTTACAAAACTAGCTTGTA+AGG - chr2_4:49758290-49758309 None:intergenic 35.0%
!!! CCTTACAAGCTAGTTTTGTA+AGG + chr2_4:49758287-49758306 Msa0332640:intron 35.0%
GAAGAAACAGAGCGAAAATA+AGG + chr2_4:49758651-49758670 Msa0332640:intron 35.0%
! AACCAAGAGCATGTTTGATT+TGG - chr2_4:49758717-49758736 None:intergenic 35.0%
!! GTTTTCCATTTGGAATAGAG+GGG - chr2_4:49758901-49758920 None:intergenic 35.0%
! AACTACTCTTTTGCATGTGA+TGG + chr2_4:49758918-49758937 Msa0332640:intron 35.0%
ATTGGGTGCAGTGTTTAAAT+GGG - chr2_4:49759041-49759060 None:intergenic 35.0%
! ATATTTGTTTCTTTCGGGGA+GGG - chr2_4:49759202-49759221 None:intergenic 35.0%
! TGGGGATATTTGTTTCTTTC+GGG - chr2_4:49759207-49759226 None:intergenic 35.0%
AAAAAACCAGAATTATGGGG+TGG + chr2_4:49759440-49759459 Msa0332640:intron 35.0%
AAAAACCAGAATTATGGGGT+GGG + chr2_4:49759441-49759460 Msa0332640:intron 35.0%
AAGGCCTAAAGTACAATAAG+CGG + chr2_4:49759759-49759778 Msa0332640:intron 35.0%
ACTTATTGTACTTTAGGCCT+TGG - chr2_4:49759854-49759873 None:intergenic 35.0%
AAGGCCTAAAGTACAATAAG+TGG + chr2_4:49759759-49759778 Msa0332640:intron 35.0%
GACACCACTTATTGTACTTT+AGG - chr2_4:49759860-49759879 None:intergenic 35.0%
ACGATAGTAAGCACTTGTAA+TGG - chr2_4:49760052-49760071 None:intergenic 35.0%
ATTACAAGTGCTTACTATCG+TGG + chr2_4:49760051-49760070 Msa0332640:CDS 35.0%
TTACAAGTGCTTACTATCGT+GGG + chr2_4:49760052-49760071 Msa0332640:CDS 35.0%
AACAAGCATCACAACAATGT+TGG - chr2_4:49760172-49760191 None:intergenic 35.0%
AACATTGTTGTGATGCTTGT+TGG + chr2_4:49760171-49760190 Msa0332640:CDS 35.0%
CAGCTTTCTTGCTAACAATA+CGG - chr2_4:49760347-49760366 None:intergenic 35.0%
GACAAGTTTCATGTTTCAGT+AGG + chr2_4:49760616-49760635 Msa0332640:three_prime_UTR 35.0%
! TCTGCAAATTGATTCAAGCT+TGG + chr2_4:49760708-49760727 Msa0332640:three_prime_UTR 35.0%
TAATAGAATCATCCAACCAC+TGG + chr2_4:49760792-49760811 Msa0332640:three_prime_UTR 35.0%
AAGAAGACGAAGAAGAATGG+CGG + chr2_4:49756853-49756872 Msa0332640:exon 40.0%
CGACTATGACTACCTATTCA+AGG + chr2_4:49756892-49756911 Msa0332640:CDS 40.0%
CGATCAGAACTACCTTGAAT+AGG - chr2_4:49756907-49756926 None:intergenic 40.0%
CTTGAATCCAAATCCACCAT+TGG + chr2_4:49756986-49757005 Msa0332640:CDS 40.0%
!! TTCAACACCAATGGTGGATT+TGG - chr2_4:49756996-49757015 None:intergenic 40.0%
AGTAGCGAATTCAACACCAA+TGG - chr2_4:49757005-49757024 None:intergenic 40.0%
TAACAACAGATCACGATCGA+CGG - chr2_4:49757157-49757176 None:intergenic 40.0%
!! TAAACTTAGTAGCACCGACA+CGG + chr2_4:49757186-49757205 Msa0332640:intron 40.0%
ATCTCCAAAGACTCGATCTA+TGG + chr2_4:49757644-49757663 Msa0332640:intron 40.0%
AGGCAGAGAAGACAATCTAT+CGG - chr2_4:49757690-49757709 None:intergenic 40.0%
ATAGATTGTCTTCTCTGCCT+TGG + chr2_4:49757690-49757709 Msa0332640:intron 40.0%
! TTCTTGTTTGACCTGGTTAG+CGG + chr2_4:49757929-49757948 Msa0332640:intron 40.0%
!! AGCCTCATTTTGAACTTGCT+TGG + chr2_4:49758109-49758128 Msa0332640:intron 40.0%
TAGACCTCTCCAATATCAAG+CGG - chr2_4:49758201-49758220 None:intergenic 40.0%
TCCCATATTTGGTTGAGAGA+AGG + chr2_4:49758230-49758249 Msa0332640:intron 40.0%
GACCTTCTCTCAACCAAATA+TGG - chr2_4:49758235-49758254 None:intergenic 40.0%
TATTTGGTTGAGAGAAGGTC+TGG + chr2_4:49758235-49758254 Msa0332640:intron 40.0%
CTGGATATGTGCTCATTAGT+TGG + chr2_4:49758254-49758273 Msa0332640:intron 40.0%
CTCTGTAGAGTAGCGAAATT+TGG - chr2_4:49758452-49758471 None:intergenic 40.0%
CAAATTTCGCTACTCTACAG+AGG + chr2_4:49758450-49758469 Msa0332640:intron 40.0%
CTCCAAATCAAACATGCTCT+TGG + chr2_4:49758712-49758731 Msa0332640:intron 40.0%
TCAGTAAAGTTGCCTATGGT+AGG + chr2_4:49758842-49758861 Msa0332640:intron 40.0%
!! AGCATTGTGTCGTTTGAGTA+GGG + chr2_4:49758874-49758893 Msa0332640:intron 40.0%
CATTGGGTGCAGTGTTTAAA+TGG - chr2_4:49759042-49759061 None:intergenic 40.0%
CTCTTCTACCATCTTGCATT+GGG - chr2_4:49759058-49759077 None:intergenic 40.0%
ACTCTTCTACCATCTTGCAT+TGG - chr2_4:49759059-49759078 None:intergenic 40.0%
! GATATTTGTTTCTTTCGGGG+AGG - chr2_4:49759203-49759222 None:intergenic 40.0%
! GGGGATATTTGTTTCTTTCG+GGG - chr2_4:49759206-49759225 None:intergenic 40.0%
AAGGAACATGTCGATAACAG+GGG - chr2_4:49759344-49759363 None:intergenic 40.0%
CAAGGAACATGTCGATAACA+GGG - chr2_4:49759345-49759364 None:intergenic 40.0%
TCAAGGAACATGTCGATAAC+AGG - chr2_4:49759346-49759365 None:intergenic 40.0%
! TGATTCAAGTTCTGTAGCCA+AGG + chr2_4:49759740-49759759 Msa0332640:intron 40.0%
GCTTATTGTACTTTAGGCCT+TGG - chr2_4:49759760-49759779 None:intergenic 40.0%
GACACCGCTTATTGTACTTT+AGG - chr2_4:49759766-49759785 None:intergenic 40.0%
! TGATTCAAGTTCTGTAGCCA+AGG + chr2_4:49759740-49759759 Msa0332640:intron 40.0%
! GATGCTGCATAGTTGCTTTA+TGG + chr2_4:49759922-49759941 Msa0332640:intron 40.0%
!! TTCACACTGTTTCTATCTGC+AGG + chr2_4:49760019-49760038 Msa0332640:intron 40.0%
TACAAGTGCTTACTATCGTG+GGG + chr2_4:49760053-49760072 Msa0332640:CDS 40.0%
CAACAATGTTGGAATCTGTG+TGG - chr2_4:49760161-49760180 None:intergenic 40.0%
TAGCCGTATCAACTGAAGAT+GGG + chr2_4:49760220-49760239 Msa0332640:CDS 40.0%
! CTTCCCATCTTCAGTTGATA+CGG - chr2_4:49760226-49760245 None:intergenic 40.0%
TGTTAGCAAGAAAGCTGTAG+AGG + chr2_4:49760350-49760369 Msa0332640:CDS 40.0%
GTTAGCAAGAAAGCTGTAGA+GGG + chr2_4:49760351-49760370 Msa0332640:CDS 40.0%
! TCTATTTTCTCTCCTTTGGC+TGG - chr2_4:49760402-49760421 None:intergenic 40.0%
!! GTTTCAGCTTTGAAGAGAGT+TGG + chr2_4:49760435-49760454 Msa0332640:CDS 40.0%
AGAAGACGAAGAAGAATGGC+GGG + chr2_4:49756854-49756873 Msa0332640:exon 45.0%
AAGATTGGATTTGCCAACGC+CGG - chr2_4:49756936-49756955 None:intergenic 45.0%
GGTGAAACGAGAGAGAAGAT+TGG - chr2_4:49756951-49756970 None:intergenic 45.0%
AGCGAATTCAACACCAATGG+TGG - chr2_4:49757002-49757021 None:intergenic 45.0%
AACAACAGATCACGATCGAC+GGG - chr2_4:49757156-49757175 None:intergenic 45.0%
GTGTGACATCTATCAGACAC+CGG - chr2_4:49757221-49757240 None:intergenic 45.0%
AGCGTCAGTAAAGTTGCCTA+TGG + chr2_4:49758838-49758857 Msa0332640:intron 45.0%
TAAAGTTGCCTATGGTAGGC+TGG + chr2_4:49758846-49758865 Msa0332640:intron 45.0%
AAAGTTGCCTATGGTAGGCT+GGG + chr2_4:49758847-49758866 Msa0332640:intron 45.0%
!! GAGCATTGTGTCGTTTGAGT+AGG + chr2_4:49758873-49758892 Msa0332640:intron 45.0%
! TGGCACATCAGATTTTGCAC+AGG - chr2_4:49759470-49759489 None:intergenic 45.0%
AACAATTGGGGCACATCAAG+AGG - chr2_4:49759591-49759610 None:intergenic 45.0%
ATGCAGCATCGTGTTCATTC+AGG - chr2_4:49759912-49759931 None:intergenic 45.0%
CGACGTTCTCAAATGTTGCA+TGG - chr2_4:49760113-49760132 None:intergenic 45.0%
CATTTGAGAACGTCGACAGA+TGG + chr2_4:49760118-49760137 Msa0332640:CDS 45.0%
TTGATACGGCTACAAGGTGA+CGG - chr2_4:49760212-49760231 None:intergenic 45.0%
! CTTCAGTTGATACGGCTACA+AGG - chr2_4:49760218-49760237 None:intergenic 45.0%
GTAGCCGTATCAACTGAAGA+TGG + chr2_4:49760219-49760238 Msa0332640:CDS 45.0%
TTTCATGGAAACCTCAGCTC+TGG + chr2_4:49760272-49760291 Msa0332640:CDS 45.0%
GTTGCTGCTCAAGCTAAGAT+TGG + chr2_4:49760457-49760476 Msa0332640:exon 45.0%
ATGTTTCAGTAGGAGCTGCT+GGG + chr2_4:49760626-49760645 Msa0332640:three_prime_UTR 45.0%
GGGATACTGCTGGTCAAGAA+AGG + chr2_4:49757068-49757087 Msa0332640:CDS 50.0%
TTGTCTTCTCTGCCTTGGAC+TGG + chr2_4:49757695-49757714 Msa0332640:intron 50.0%
TGTCTTCTCTGCCTTGGACT+GGG + chr2_4:49757696-49757715 Msa0332640:intron 50.0%
ACTGTTGGGCCGCTTGATAT+TGG + chr2_4:49758189-49758208 Msa0332640:intron 50.0%
AAGTTGCCTATGGTAGGCTG+GGG + chr2_4:49758848-49758867 Msa0332640:intron 50.0%
AGGGTCCCCTCTATTCCAAA+TGG + chr2_4:49758893-49758912 Msa0332640:intron 50.0%
ACACTGCACCCAATGCAAGA+TGG + chr2_4:49759047-49759066 Msa0332640:intron 50.0%
GGTATCCCACCCCATAATTC+TGG - chr2_4:49759449-49759468 None:intergenic 50.0%
CAGCATCGTGTTCATTCAGG+TGG - chr2_4:49759909-49759928 None:intergenic 50.0%
!! GCTGTAGAGGGTGCTGAAAA+TGG + chr2_4:49760363-49760382 Msa0332640:CDS 50.0%
CATGTTTCAGTAGGAGCTGC+TGG + chr2_4:49760625-49760644 Msa0332640:three_prime_UTR 50.0%
TGTTTCAGTAGGAGCTGCTG+GGG + chr2_4:49760627-49760646 Msa0332640:three_prime_UTR 50.0%
! TGTGCACTGTTTTGTGGTCG+TGG + chr2_4:49760759-49760778 Msa0332640:three_prime_UTR 50.0%
!! GTAGTTCTGATCGGCGACTC+CGG + chr2_4:49756914-49756933 Msa0332640:CDS 55.0%
! GCTCAGATCTGGGATACTGC+TGG + chr2_4:49757058-49757077 Msa0332640:CDS 55.0%
GTCTTCTCTGCCTTGGACTG+GGG + chr2_4:49757697-49757716 Msa0332640:intron 55.0%
CCTAAAGGCTACCGCTAACC+AGG - chr2_4:49757943-49757962 None:intergenic 55.0%
CCTGGTTAGCGGTAGCCTTT+AGG + chr2_4:49757940-49757959 Msa0332640:intron 55.0%
TGGGCCGCTTGATATTGGAG+AGG + chr2_4:49758194-49758213 Msa0332640:intron 55.0%
!! TAGCAGGGTGCTGCTAGATG+GGG - chr2_4:49759225-49759244 None:intergenic 55.0%
!! CTAGCAGGGTGCTGCTAGAT+GGG - chr2_4:49759226-49759245 None:intergenic 55.0%
!! ACTAGCAGGGTGCTGCTAGA+TGG - chr2_4:49759227-49759246 None:intergenic 55.0%
GCTTACTATCGTGGGGCAGT+TGG + chr2_4:49760060-49760079 Msa0332640:CDS 55.0%
! CATGGAAACCTCAGCTCTGG+AGG + chr2_4:49760275-49760294 Msa0332640:CDS 55.0%
GTTAGTAGCCTCCAGAGCTG+AGG - chr2_4:49760286-49760305 None:intergenic 55.0%
ACCGACACGGAAGACGTGTC+CGG + chr2_4:49757199-49757218 Msa0332640:intron 60.0%
ACCGGACACGTCTTCCGTGT+CGG - chr2_4:49757203-49757222 None:intergenic 60.0%
AGGGATAGTGCCCCAGTCCA+AGG - chr2_4:49757710-49757729 None:intergenic 60.0%
TTGCCTATGGTAGGCTGGGG+TGG + chr2_4:49758851-49758870 Msa0332640:intron 60.0%
AACGCGTCTGTGCCAGCCAA+AGG + chr2_4:49760387-49760406 Msa0332640:CDS 60.0%
GCTCCACCCCAGCCTACCAT+AGG - chr2_4:49758857-49758876 None:intergenic 65.0%
CTGATCGGCGACTCCGGCGT+TGG + chr2_4:49756920-49756939 Msa0332640:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 49756745 49760815 49756745 ID=Msa0332640;Name=Msa0332640
chr2_4 mRNA 49756745 49760815 49756745 ID=Msa0332640-mRNA-1;Parent=Msa0332640;Name=Msa0332640-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|1|1|1|1|1|2|342|217
chr2_4 exon 49756745 49757089 49756745 ID=Msa0332640-mRNA-1:exon:14896;Parent=Msa0332640-mRNA-1
chr2_4 exon 49760041 49760815 49760041 ID=Msa0332640-mRNA-1:exon:14897;Parent=Msa0332640-mRNA-1
chr2_4 five_prime_UTR 49756745 49756868 49756745 ID=Msa0332640-mRNA-1:five_prime_utr;Parent=Msa0332640-mRNA-1
chr2_4 CDS 49756869 49757089 49756869 ID=Msa0332640-mRNA-1:cds;Parent=Msa0332640-mRNA-1
chr2_4 CDS 49760041 49760473 49760041 ID=Msa0332640-mRNA-1:cds;Parent=Msa0332640-mRNA-1
chr2_4 three_prime_UTR 49760474 49760815 49760474 ID=Msa0332640-mRNA-1:three_prime_utr;Parent=Msa0332640-mRNA-1
Gene Sequence

>Msa0332640

ATGGCGGGTTACAGAGCAGACGACGACTATGACTACCTATTCAAGGTAGTTCTGATCGGCGACTCCGGCGTTGGCAAATCCAATCTTCTCTCTCGTTTCACCAAAAACGAGTTCAATCTTGAATCCAAATCCACCATTGGTGTTGAATTCGCTACTCGTACTTTAAATGTTGATTCTAAAGTTATTAAGGCTCAGATCTGGGATACTGCTGGTCAAGAAAGGTATCGCGCCATTACAAGTGCTTACTATCGTGGGGCAGTTGGTGCACTTCTTGTATATGATGTTACACGCCATGCAACATTTGAGAACGTCGACAGATGGCTGAAAGAACTGCGAAACCACACAGATTCCAACATTGTTGTGATGCTTGTTGGCAACAAAGCAGATCTCCGTCACCTTGTAGCCGTATCAACTGAAGATGGGAAGTCTTATGCCGAGAAAGAATCACTTTATTTCATGGAAACCTCAGCTCTGGAGGCTACTAACGTAGAGAATTCATTTGCTGAAGTTCTGACTCAAATCTACCGTATTGTTAGCAAGAAAGCTGTAGAGGGTGCTGAAAATGGAAACGCGTCTGTGCCAGCCAAAGGAGAGAAAATAGATCTTAAGAATGATGTTTCAGCTTTGAAGAGAGTTGGTTGCTGCTCAAGCTAA

Protein sequence

>Msa0332640

MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDSNIVVMLVGNKADLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENSFAEVLTQIYRIVSKKAVEGAENGNASVPAKGEKIDLKNDVSALKRVGCCSS*