Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665440 | XP_013454832.1 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665440 | sp|Q80Y75|DJB13_MOUSE | 42.939 | 347 | 160 | 7 | 1 | 340 | 1 | 316 | 2.63e-86 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665440 | G8A2L9 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0113240 | Msa0665440 | 0.804059 | 2.590928e-49 | -8.615850e-47 |
| Msa0633570 | Msa0665440 | 0.819940 | 8.917277e-53 | -8.615850e-47 |
| Msa0665430 | Msa0665440 | 0.946191 | 7.385283e-105 | -8.615850e-47 |
| Msa0665440 | Msa0693210 | 0.818728 | 1.684994e-52 | -8.615850e-47 |
| Msa0665440 | Msa0808800 | 0.809056 | 2.284543e-50 | -8.615850e-47 |
| Msa0665440 | Msa0963020 | 0.813018 | 3.164767e-51 | -8.615850e-47 |
| Msa0665440 | Msa1013180 | 0.806142 | 9.496704e-50 | -8.615850e-47 |
| Msa0665440 | Msa1438050 | 0.806525 | 7.886323e-50 | -8.615850e-47 |
| Msa0665440 | Msa1462860 | 0.804968 | 1.674297e-49 | -8.615850e-47 |
| Msa0138360 | Msa0665440 | 0.811675 | 6.218967e-51 | -8.615850e-47 |
| Msa0147980 | Msa0665440 | 0.806680 | 7.314498e-50 | -8.615850e-47 |
| Msa0172980 | Msa0665440 | 0.801555 | 8.520592e-49 | -8.615850e-47 |
| Msa0423750 | Msa0665440 | 0.806409 | 8.342985e-50 | -8.615850e-47 |
| Msa0470530 | Msa0665440 | 0.800862 | 1.180870e-48 | -8.615850e-47 |
| Msa0245060 | Msa0665440 | 0.800955 | 1.130190e-48 | -8.615850e-47 |
| Msa0245580 | Msa0665440 | 0.814811 | 1.274036e-51 | -8.615850e-47 |
| Msa0296250 | Msa0665440 | 0.817719 | 2.850373e-52 | -8.615850e-47 |
| Msa0305780 | Msa0665440 | 0.808997 | 2.352194e-50 | -8.615850e-47 |
| Msa0332640 | Msa0665440 | 0.829697 | 4.451504e-55 | -8.615850e-47 |
| Msa0348830 | Msa0665440 | 0.800840 | 1.193524e-48 | -8.615850e-47 |
| Msa0358770 | Msa0665440 | 0.807733 | 4.376761e-50 | -8.615850e-47 |
| Msa0527190 | Msa0665440 | 0.801996 | 6.918055e-49 | -8.615850e-47 |
| Msa0593700 | Msa0665440 | 0.822223 | 2.657861e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665440 | MtrunA17_Chr4g0006391 | 99.707 | 341 | 1 | 0 | 1 | 341 | 1 | 341 | 0.0 | 693 |
| Msa0665440 | MtrunA17_Chr2g0282741 | 70.930 | 344 | 90 | 4 | 1 | 339 | 1 | 339 | 1.85e-171 | 480 |
| Msa0665440 | MtrunA17_Chr4g0040501 | 67.521 | 351 | 99 | 4 | 1 | 341 | 1 | 346 | 1.51e-170 | 478 |
| Msa0665440 | MtrunA17_Chr2g0324921 | 63.429 | 350 | 102 | 5 | 1 | 339 | 1 | 335 | 3.59e-154 | 436 |
| Msa0665440 | MtrunA17_Chr2g0282761 | 60.580 | 345 | 117 | 6 | 1 | 332 | 1 | 339 | 1.64e-136 | 391 |
| Msa0665440 | MtrunA17_Chr3g0138471 | 58.235 | 340 | 125 | 5 | 1 | 338 | 1 | 325 | 1.06e-128 | 371 |
| Msa0665440 | MtrunA17_Chr3g0093111 | 42.029 | 345 | 158 | 4 | 3 | 339 | 1 | 311 | 7.56e-97 | 289 |
| Msa0665440 | MtrunA17_Chr5g0415751 | 58.621 | 145 | 60 | 0 | 194 | 338 | 16 | 160 | 2.91e-57 | 183 |
| Msa0665440 | MtrunA17_Chr7g0269841 | 37.318 | 343 | 180 | 8 | 5 | 338 | 27 | 343 | 7.81e-55 | 182 |
| Msa0665440 | MtrunA17_Chr2g0277721 | 44.624 | 186 | 102 | 1 | 154 | 338 | 74 | 259 | 1.38e-47 | 161 |
| Msa0665440 | MtrunA17_Chr3g0124801 | 41.837 | 196 | 107 | 2 | 147 | 341 | 105 | 294 | 1.13e-45 | 157 |
| Msa0665440 | MtrunA17_Chr8g0334811 | 29.455 | 404 | 159 | 12 | 5 | 338 | 15 | 362 | 4.62e-37 | 137 |
| Msa0665440 | MtrunA17_Chr3g0123861 | 28.689 | 366 | 209 | 13 | 3 | 337 | 81 | 425 | 1.33e-31 | 123 |
| Msa0665440 | MtrunA17_Chr5g0426951 | 29.480 | 346 | 216 | 12 | 4 | 332 | 83 | 417 | 1.50e-26 | 109 |
| Msa0665440 | MtrunA17_Chr6g0478651 | 27.056 | 377 | 214 | 11 | 2 | 339 | 66 | 420 | 3.60e-26 | 108 |
| Msa0665440 | MtrunA17_Chr3g0091351 | 46.875 | 96 | 51 | 0 | 224 | 319 | 2 | 97 | 5.71e-26 | 99.8 |
| Msa0665440 | MtrunA17_Chr2g0322181 | 36.957 | 138 | 85 | 1 | 203 | 338 | 221 | 358 | 2.97e-25 | 105 |
| Msa0665440 | MtrunA17_Chr2g0322181 | 56.338 | 71 | 26 | 1 | 5 | 75 | 14 | 79 | 2.39e-12 | 67.4 |
| Msa0665440 | MtrunA17_Chr4g0025401 | 36.232 | 138 | 86 | 1 | 203 | 338 | 219 | 356 | 2.52e-24 | 102 |
| Msa0665440 | MtrunA17_Chr4g0025401 | 52.113 | 71 | 29 | 1 | 5 | 75 | 14 | 79 | 7.31e-11 | 63.2 |
| Msa0665440 | MtrunA17_Chr3g0087741 | 30.028 | 353 | 211 | 11 | 4 | 337 | 89 | 424 | 2.62e-23 | 100 |
| Msa0665440 | MtrunA17_Chr5g0415731 | 54.667 | 75 | 27 | 1 | 4 | 71 | 5 | 79 | 1.28e-20 | 86.7 |
| Msa0665440 | MtrunA17_Chr4g0010781 | 26.149 | 348 | 220 | 11 | 5 | 331 | 87 | 418 | 6.33e-20 | 90.1 |
| Msa0665440 | MtrunA17_Chr3g0091361 | 49.367 | 79 | 40 | 0 | 3 | 81 | 4 | 82 | 1.93e-19 | 85.5 |
| Msa0665440 | MtrunA17_Chr7g0263971 | 55.385 | 65 | 29 | 0 | 4 | 68 | 369 | 433 | 2.39e-19 | 89.0 |
| Msa0665440 | MtrunA17_Chr2g0333221 | 41.803 | 122 | 51 | 4 | 4 | 125 | 70 | 171 | 6.28e-19 | 87.4 |
| Msa0665440 | MtrunA17_Chr4g0021141 | 55.224 | 67 | 29 | 1 | 4 | 70 | 22 | 87 | 8.53e-18 | 79.0 |
| Msa0665440 | MtrunA17_Chr7g0271891 | 54.545 | 66 | 27 | 1 | 5 | 67 | 17 | 82 | 4.66e-17 | 77.8 |
| Msa0665440 | MtrunA17_Chr1g0159491 | 44.444 | 72 | 39 | 1 | 3 | 74 | 5 | 75 | 5.57e-16 | 72.0 |
| Msa0665440 | MtrunA17_Chr5g0399201 | 47.297 | 74 | 37 | 1 | 4 | 75 | 12 | 85 | 9.90e-16 | 78.2 |
| Msa0665440 | MtrunA17_Chr1g0209551 | 49.296 | 71 | 35 | 1 | 4 | 74 | 16 | 85 | 2.18e-15 | 76.6 |
| Msa0665440 | MtrunA17_Chr5g0427221 | 51.562 | 64 | 30 | 1 | 4 | 67 | 48 | 110 | 3.68e-15 | 72.0 |
| Msa0665440 | MtrunA17_Chr7g0242951 | 50.000 | 70 | 33 | 1 | 3 | 72 | 26 | 93 | 5.56e-15 | 75.9 |
| Msa0665440 | MtrunA17_Chr5g0414471 | 49.315 | 73 | 36 | 1 | 4 | 76 | 25 | 96 | 2.20e-14 | 73.6 |
| Msa0665440 | MtrunA17_Chr8g0344721 | 46.377 | 69 | 32 | 1 | 4 | 67 | 10 | 78 | 4.21e-14 | 70.9 |
| Msa0665440 | MtrunA17_Chr4g0044331 | 54.717 | 53 | 21 | 1 | 18 | 67 | 26 | 78 | 8.29e-14 | 68.2 |
| Msa0665440 | MtrunA17_Chr3g0132971 | 52.239 | 67 | 29 | 2 | 3 | 68 | 68 | 132 | 1.53e-13 | 69.3 |
| Msa0665440 | MtrunA17_Chr6g0460461 | 41.333 | 75 | 40 | 1 | 3 | 73 | 1 | 75 | 2.57e-13 | 68.2 |
| Msa0665440 | MtrunA17_Chr6g0460411 | 42.667 | 75 | 39 | 1 | 3 | 73 | 1 | 75 | 2.79e-13 | 68.2 |
| Msa0665440 | MtrunA17_Chr1g0173931 | 46.154 | 65 | 34 | 1 | 6 | 70 | 40 | 103 | 2.42e-12 | 66.6 |
| Msa0665440 | MtrunA17_Chr6g0460381 | 43.478 | 69 | 35 | 1 | 3 | 67 | 2 | 70 | 2.67e-12 | 65.1 |
| Msa0665440 | MtrunA17_Chr7g0258061 | 31.707 | 123 | 77 | 3 | 6 | 122 | 24 | 145 | 5.66e-12 | 65.5 |
| Msa0665440 | MtrunA17_Chr5g0393371 | 45.070 | 71 | 38 | 1 | 4 | 74 | 6 | 75 | 2.22e-11 | 64.3 |
| Msa0665440 | MtrunA17_Chr2g0286511 | 53.846 | 65 | 28 | 1 | 3 | 67 | 68 | 130 | 6.15e-11 | 63.9 |
| Msa0665440 | MtrunA17_Chr8g0352451 | 42.697 | 89 | 48 | 2 | 5 | 91 | 73 | 160 | 6.98e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665440 | AT3G08910.1 | 77.843 | 343 | 54 | 5 | 1 | 341 | 1 | 323 | 0.0 | 519 |
| Msa0665440 | AT5G01390.1 | 75.588 | 340 | 76 | 4 | 1 | 339 | 1 | 334 | 0.0 | 504 |
| Msa0665440 | AT2G20560.1 | 71.884 | 345 | 81 | 4 | 1 | 338 | 1 | 336 | 6.73e-175 | 489 |
| Msa0665440 | AT4G28480.1 | 67.422 | 353 | 94 | 4 | 1 | 338 | 1 | 347 | 1.45e-162 | 458 |
| Msa0665440 | AT5G25530.2 | 58.166 | 349 | 125 | 6 | 1 | 339 | 1 | 338 | 2.07e-136 | 391 |
| Msa0665440 | AT4G28480.2 | 61.516 | 343 | 73 | 5 | 1 | 338 | 1 | 289 | 3.33e-136 | 389 |
| Msa0665440 | AT5G25530.1 | 56.863 | 357 | 125 | 7 | 1 | 339 | 1 | 346 | 1.69e-133 | 384 |
| Msa0665440 | AT5G01390.2 | 61.224 | 343 | 62 | 5 | 1 | 339 | 1 | 276 | 6.31e-133 | 380 |
| Msa0665440 | AT1G10350.1 | 55.714 | 350 | 145 | 3 | 1 | 341 | 1 | 349 | 6.81e-129 | 372 |
| Msa0665440 | AT3G47940.1 | 52.162 | 370 | 121 | 5 | 1 | 338 | 1 | 346 | 2.31e-125 | 363 |
| Msa0665440 | AT1G59725.1 | 54.416 | 351 | 130 | 4 | 1 | 341 | 1 | 331 | 4.40e-124 | 360 |
| Msa0665440 | AT5G01390.3 | 53.687 | 339 | 55 | 5 | 1 | 339 | 1 | 237 | 1.55e-106 | 311 |
| Msa0665440 | AT2G20550.1 | 55.986 | 284 | 77 | 6 | 100 | 338 | 3 | 283 | 5.23e-97 | 289 |
| Msa0665440 | AT2G20550.2 | 55.986 | 284 | 77 | 6 | 100 | 338 | 3 | 283 | 5.23e-97 | 289 |
| Msa0665440 | AT5G01390.4 | 70.918 | 196 | 50 | 4 | 1 | 195 | 1 | 190 | 2.02e-84 | 255 |
| Msa0665440 | AT1G44160.1 | 43.220 | 236 | 121 | 3 | 111 | 341 | 129 | 356 | 2.77e-52 | 177 |
| Msa0665440 | AT3G62600.1 | 37.037 | 351 | 180 | 11 | 2 | 339 | 24 | 346 | 1.41e-51 | 174 |
| Msa0665440 | AT1G11040.1 | 39.604 | 202 | 107 | 1 | 146 | 332 | 225 | 426 | 2.59e-44 | 157 |
| Msa0665440 | AT5G22060.1 | 30.905 | 398 | 158 | 10 | 5 | 338 | 15 | 359 | 3.92e-37 | 138 |
| Msa0665440 | AT2G22360.1 | 29.091 | 385 | 182 | 13 | 3 | 337 | 85 | 428 | 2.40e-35 | 134 |
| Msa0665440 | AT5G48030.1 | 28.532 | 361 | 203 | 14 | 4 | 331 | 94 | 432 | 6.52e-26 | 107 |
| Msa0665440 | AT3G44110.1 | 36.232 | 138 | 86 | 1 | 203 | 338 | 221 | 358 | 7.95e-24 | 101 |
| Msa0665440 | AT1G80030.4 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 8.32e-21 | 93.6 |
| Msa0665440 | AT1G80030.2 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-20 | 93.2 |
| Msa0665440 | AT1G80030.3 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-20 | 93.2 |
| Msa0665440 | AT1G80030.1 | 43.307 | 127 | 46 | 5 | 4 | 130 | 75 | 175 | 1.02e-20 | 93.2 |
| Msa0665440 | AT3G17830.1 | 56.000 | 75 | 31 | 1 | 2 | 76 | 61 | 133 | 2.01e-19 | 89.7 |
| Msa0665440 | AT4G39960.1 | 50.588 | 85 | 36 | 2 | 4 | 88 | 85 | 163 | 8.45e-19 | 87.4 |
| Msa0665440 | AT4G39960.1 | 32.353 | 136 | 88 | 3 | 204 | 337 | 301 | 434 | 2.48e-14 | 73.9 |
| Msa0665440 | AT4G39960.2 | 50.588 | 85 | 36 | 2 | 4 | 88 | 85 | 163 | 8.45e-19 | 87.4 |
| Msa0665440 | AT4G39960.2 | 32.353 | 136 | 88 | 3 | 204 | 337 | 301 | 434 | 2.48e-14 | 73.9 |
| Msa0665440 | AT3G44110.2 | 37.037 | 108 | 66 | 1 | 203 | 308 | 221 | 328 | 2.61e-17 | 82.0 |
| Msa0665440 | AT5G03160.1 | 52.308 | 65 | 31 | 0 | 4 | 68 | 370 | 434 | 2.41e-16 | 80.1 |
| Msa0665440 | AT1G68370.1 | 52.113 | 71 | 33 | 1 | 4 | 74 | 17 | 86 | 5.36e-16 | 79.0 |
| Msa0665440 | AT1G56300.2 | 51.515 | 66 | 29 | 1 | 5 | 67 | 14 | 79 | 9.69e-16 | 73.2 |
| Msa0665440 | AT1G56300.1 | 51.515 | 66 | 29 | 1 | 5 | 67 | 14 | 79 | 1.13e-15 | 73.9 |
| Msa0665440 | AT5G16650.2 | 51.562 | 64 | 30 | 1 | 4 | 67 | 11 | 73 | 1.94e-15 | 73.6 |
| Msa0665440 | AT5G16650.1 | 51.562 | 64 | 30 | 1 | 4 | 67 | 11 | 73 | 2.73e-15 | 72.0 |
| Msa0665440 | AT1G59980.2 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 8.24e-15 | 75.1 |
| Msa0665440 | AT1G59980.1 | 47.826 | 69 | 35 | 1 | 6 | 74 | 25 | 92 | 1.60e-14 | 74.3 |
| Msa0665440 | AT2G41000.2 | 46.377 | 69 | 33 | 1 | 3 | 67 | 2 | 70 | 3.06e-14 | 71.2 |
| Msa0665440 | AT3G08970.1 | 49.333 | 75 | 34 | 2 | 3 | 77 | 26 | 96 | 4.03e-14 | 73.6 |
| Msa0665440 | AT3G08970.2 | 49.333 | 75 | 34 | 2 | 3 | 77 | 26 | 96 | 4.03e-14 | 73.6 |
| Msa0665440 | AT2G35720.1 | 45.205 | 73 | 38 | 1 | 4 | 74 | 15 | 87 | 4.94e-14 | 73.6 |
| Msa0665440 | AT2G41000.1 | 46.377 | 69 | 33 | 1 | 3 | 67 | 2 | 70 | 6.49e-14 | 69.7 |
| Msa0665440 | AT2G21510.3 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.03e-14 | 71.6 |
| Msa0665440 | AT2G21510.1 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.03e-14 | 71.6 |
| Msa0665440 | AT2G21510.2 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.96e-14 | 71.6 |
| Msa0665440 | AT2G21510.4 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 9.96e-14 | 71.6 |
| Msa0665440 | AT2G21510.5 | 46.914 | 81 | 41 | 2 | 4 | 83 | 6 | 85 | 1.23e-13 | 71.2 |
| Msa0665440 | AT1G24120.1 | 44.595 | 74 | 40 | 1 | 4 | 77 | 20 | 92 | 1.96e-13 | 71.2 |
| Msa0665440 | AT2G33735.1 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 2.65e-13 | 66.2 |
| Msa0665440 | AT2G33735.2 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 2.65e-13 | 66.2 |
| Msa0665440 | AT5G06910.1 | 49.231 | 65 | 32 | 1 | 6 | 70 | 31 | 94 | 8.16e-13 | 68.6 |
| Msa0665440 | AT1G71000.2 | 43.939 | 66 | 34 | 1 | 5 | 67 | 9 | 74 | 7.52e-12 | 63.5 |
| Msa0665440 | AT4G39150.3 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 1.05e-11 | 65.5 |
| Msa0665440 | AT4G39150.1 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 1.05e-11 | 65.5 |
| Msa0665440 | AT4G39150.2 | 43.210 | 81 | 44 | 2 | 4 | 83 | 6 | 85 | 1.05e-11 | 65.5 |
| Msa0665440 | AT1G71000.1 | 43.939 | 66 | 34 | 1 | 5 | 67 | 9 | 74 | 1.59e-11 | 62.4 |
| Msa0665440 | AT4G19570.1 | 51.515 | 66 | 30 | 1 | 3 | 68 | 65 | 128 | 2.75e-11 | 65.1 |
| Msa0665440 | AT3G12170.1 | 46.154 | 65 | 34 | 1 | 6 | 70 | 13 | 76 | 3.27e-11 | 63.5 |
| Msa0665440 | AT1G21080.3 | 41.250 | 80 | 46 | 1 | 4 | 83 | 6 | 84 | 3.67e-11 | 64.3 |
| Msa0665440 | AT1G21080.1 | 41.250 | 80 | 46 | 1 | 4 | 83 | 6 | 84 | 4.24e-11 | 63.9 |
| Msa0665440 | AT5G05750.1 | 37.273 | 110 | 61 | 3 | 4 | 113 | 114 | 215 | 4.58e-11 | 63.2 |
| Msa0665440 | AT3G12170.2 | 46.154 | 65 | 34 | 1 | 6 | 70 | 49 | 112 | 5.58e-11 | 63.2 |
Find 112 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCATCTTTCTTGTTATT+AGG | 0.176740 | 4_4:+4908350 | None:intergenic |
| TTCAGAGATTTGCTTAAATT+TGG | 0.186487 | 4_4:+4908325 | None:intergenic |
| TCCCATCGAGGGTAGTTATT+TGG | 0.188250 | 4_4:+4905306 | None:intergenic |
| CAGCATCTTTCTTGTTATTA+GGG | 0.208495 | 4_4:+4908351 | None:intergenic |
| TCCTAAGGAACCTTCCAAAA+AGG | 0.245405 | 4_4:-4905207 | Msa0665440:CDS |
| TTGGTGTGTGTTTGCATATT+TGG | 0.254785 | 4_4:-4904857 | Msa0665440:three_prime_UTR |
| GCTTTCCGAGGGGAATGTTT+AGG | 0.274668 | 4_4:-4907089 | Msa0665440:CDS |
| CTTTCCGAGGGGAATGTTTA+GGG | 0.283758 | 4_4:-4907088 | Msa0665440:CDS |
| TCATATGAAGAAGTAATTAA+AGG | 0.309573 | 4_4:-4905245 | Msa0665440:CDS |
| ATCTAACACATCTTCATATA+TGG | 0.310157 | 4_4:+4905067 | None:intergenic |
| TGCTCTGATGTAAGTCTTGA+TGG | 0.316745 | 4_4:+4905152 | None:intergenic |
| AGTTTGGAGGATTTGTATAA+AGG | 0.321209 | 4_4:-4906973 | Msa0665440:CDS |
| TGGCGGTGGAATGGGTGATA+TGG | 0.323498 | 4_4:-4907133 | Msa0665440:CDS |
| CCCATCGAGGGTAGTTATTT+GGG | 0.326924 | 4_4:+4905307 | None:intergenic |
| CTCTGTTCATTTCCCTTCTC+CGG | 0.330584 | 4_4:+4905458 | None:intergenic |
| ATATGAAGATGTGTTAGATT+TGG | 0.333768 | 4_4:-4905063 | Msa0665440:three_prime_UTR |
| AAACAAGGTCTGCAGGTATA+AGG | 0.341570 | 4_4:+4905432 | None:intergenic |
| TCTTCTTCAAATCGGATTCA+TGG | 0.343612 | 4_4:-4908477 | Msa0665440:exon |
| TTGTTATTAGGGTTCTTATC+AGG | 0.349663 | 4_4:+4908362 | None:intergenic |
| GTTTGGAGGATTTGTATAAA+GGG | 0.350475 | 4_4:-4906972 | Msa0665440:CDS |
| TTTAGTTATGTGAAAAGTTT+TGG | 0.352721 | 4_4:-4904876 | Msa0665440:three_prime_UTR |
| AGAATTTCCTCAACTGTAGT+AGG | 0.358832 | 4_4:+4905530 | None:intergenic |
| TTGGAAGGTTCCTTAGGAAT+TGG | 0.363891 | 4_4:+4905212 | None:intergenic |
| GGTGGTCATCCTGGTGCATC+TGG | 0.369509 | 4_4:-4907111 | Msa0665440:CDS |
| GAGAACATTGCCTTGCAGTT+TGG | 0.378422 | 4_4:-4906989 | Msa0665440:CDS |
| CTTCCTCTTCTTCTTCAAAT+CGG | 0.382846 | 4_4:-4908485 | Msa0665440:five_prime_UTR |
| TTCGGGTTTCAAAGACCATT+TGG | 0.392906 | 4_4:-4907153 | Msa0665440:CDS |
| TTAATTACTTCTTCATATGA+TGG | 0.396614 | 4_4:+4905248 | None:intergenic |
| AGACCATTTGGCGGTGGAAT+GGG | 0.427291 | 4_4:-4907141 | Msa0665440:CDS |
| GTGTACATCAATTGATGAAA+TGG | 0.429386 | 4_4:+4904789 | None:intergenic |
| ATCGCAAACTTGCTATGAAA+TGG | 0.429662 | 4_4:-4908388 | Msa0665440:CDS |
| GGTGATATGGGTGGTCATCC+TGG | 0.434210 | 4_4:-4907120 | Msa0665440:CDS |
| CTTCTTCAAATCGGATTCAT+GGG | 0.435276 | 4_4:-4908476 | Msa0665440:exon |
| GGCGGTGGAATGGGTGATAT+GGG | 0.438794 | 4_4:-4907132 | Msa0665440:CDS |
| ATGGTGGGCCGACAATGTTC+CGG | 0.442105 | 4_4:-4907215 | Msa0665440:CDS |
| AACACATCTTCATATATGGC+TGG | 0.444571 | 4_4:+4905071 | None:intergenic |
| GTGTAAAAGAAATATCCAAA+TGG | 0.445259 | 4_4:+4908541 | None:intergenic |
| ATCAAGCCAGGTTGGAAGAA+AGG | 0.451023 | 4_4:-4905497 | Msa0665440:CDS |
| AAGACCATTTGGCGGTGGAA+TGG | 0.454672 | 4_4:-4907142 | Msa0665440:CDS |
| ATATGGTGAGGAGGGGTTGA+AGG | 0.458111 | 4_4:-4907283 | Msa0665440:CDS |
| TCAGAAAATCCACCTGCACC+TGG | 0.459388 | 4_4:+4907246 | None:intergenic |
| TTCAATCAATTGGAAATTCG+TGG | 0.470850 | 4_4:-4905019 | Msa0665440:three_prime_UTR |
| TTTGTTCCTTTCTTCCAACC+TGG | 0.471768 | 4_4:+4905491 | None:intergenic |
| AATATGTCATCCGCACTTCT+CGG | 0.475047 | 4_4:+4907186 | None:intergenic |
| CCGCACTTCTCGGATTGAAC+CGG | 0.478831 | 4_4:+4907196 | None:intergenic |
| CTAACAATTGAGATCAAGCC+AGG | 0.485097 | 4_4:-4905509 | Msa0665440:CDS |
| AACATTGCCTTGCAGTTTGG+AGG | 0.487226 | 4_4:-4906986 | Msa0665440:CDS |
| TGTAAAAGAAATATCCAAAT+GGG | 0.492699 | 4_4:+4908542 | None:intergenic |
| TTTCTGACGGCGGTGATGGT+GGG | 0.497456 | 4_4:-4907230 | Msa0665440:CDS |
| AGAGCTGTGTATGATCAATA+TGG | 0.509203 | 4_4:-4907300 | Msa0665440:CDS |
| CAAGGCAATGTTCTCTCTAT+CGG | 0.510097 | 4_4:+4906997 | None:intergenic |
| GCTGGAATCAGTAACATCTC+TGG | 0.511627 | 4_4:+4906927 | None:intergenic |
| CCTCGATGGGAGGAATCTTA+CGG | 0.515468 | 4_4:-4905294 | Msa0665440:CDS |
| GGACTAATGATGGTGTTGAC+GGG | 0.516562 | 4_4:+4905269 | None:intergenic |
| TCCCTCTTGAAGACAGTATG+AGG | 0.516733 | 4_4:+4905392 | None:intergenic |
| AATTCCTAAAAGAAGAGAAA+AGG | 0.517229 | 4_4:+4907061 | None:intergenic |
| TGGTGCATCTGGCTTTCCGA+GGG | 0.518716 | 4_4:-4907100 | Msa0665440:CDS |
| TTTAGGAATTCGGCCGGTGA+AGG | 0.528483 | 4_4:-4907048 | Msa0665440:CDS |
| CAGAAAATCCACCTGCACCT+GGG | 0.530250 | 4_4:+4907247 | None:intergenic |
| CTGGTGCATCTGGCTTTCCG+AGG | 0.535834 | 4_4:-4907101 | Msa0665440:CDS |
| TGAATAATTCTCTTAATCAC+TGG | 0.536623 | 4_4:-4904903 | Msa0665440:three_prime_UTR |
| TTCATATGATGGACTAATGA+TGG | 0.538880 | 4_4:+4905259 | None:intergenic |
| TTGCATTTCGATCTATCTGA+AGG | 0.539158 | 4_4:+4908435 | None:intergenic |
| GGATTGAACCGGAACATTGT+CGG | 0.543122 | 4_4:+4907207 | None:intergenic |
| CTCGGAAAGCCAGATGCACC+AGG | 0.544371 | 4_4:+4907102 | None:intergenic |
| CAATTGAGATCAAGCCAGGT+TGG | 0.546154 | 4_4:-4905505 | Msa0665440:CDS |
| AATCCGATTTGAAGAAGAAG+AGG | 0.551598 | 4_4:+4908482 | None:intergenic |
| TCACCCATTCCACCGCCAAA+TGG | 0.551823 | 4_4:+4907138 | None:intergenic |
| GGGTTTCAAAGACCATTTGG+CGG | 0.553824 | 4_4:-4907150 | Msa0665440:CDS |
| TGAAGAAGTAATTAAAGGAG+AGG | 0.557340 | 4_4:-4905240 | Msa0665440:CDS |
| AGAGGGTATGCCAATTCCTA+AGG | 0.558236 | 4_4:-4905222 | Msa0665440:CDS |
| TGTCAATAATCGCTTGATGC+CGG | 0.560172 | 4_4:+4905124 | None:intergenic |
| CCCAAATAACTACCCTCGAT+GGG | 0.567159 | 4_4:-4905307 | Msa0665440:CDS |
| GCCCAAATAACTACCCTCGA+TGG | 0.568412 | 4_4:-4905308 | Msa0665440:CDS |
| TTTCAAAGACCATTTGGCGG+TGG | 0.571030 | 4_4:-4907147 | Msa0665440:CDS |
| ACACATCTTCATATATGGCT+GGG | 0.572691 | 4_4:+4905072 | None:intergenic |
| TATGGTGAGGAGGGGTTGAA+GGG | 0.576990 | 4_4:-4907282 | Msa0665440:CDS |
| GCTGGGAGAGGTACCACCAC+TGG | 0.580661 | 4_4:+4905089 | None:intergenic |
| AGAAAATCCACCTGCACCTG+GGG | 0.581731 | 4_4:+4907248 | None:intergenic |
| GAAGAAGTAATTAAAGGAGA+GGG | 0.582830 | 4_4:-4905239 | Msa0665440:CDS |
| CACATTGGCAGATCCTTCAC+CGG | 0.582928 | 4_4:+4907035 | None:intergenic |
| TCTCTTGTAGAAGCTCTGAC+AGG | 0.585328 | 4_4:-4905338 | Msa0665440:CDS |
| TGGACTAATGATGGTGTTGA+CGG | 0.590380 | 4_4:+4905268 | None:intergenic |
| TATGATCAATATGGTGAGGA+GGG | 0.591969 | 4_4:-4907291 | Msa0665440:CDS |
| TACAAATCCTCCAAACTGCA+AGG | 0.594020 | 4_4:+4906979 | None:intergenic |
| CTTACATCAGAGCAGAAGAC+CGG | 0.597536 | 4_4:-4905143 | Msa0665440:CDS |
| TCTTCATATATGGCTGGGAG+AGG | 0.599264 | 4_4:+4905077 | None:intergenic |
| CGTAAGATTCCTCCCATCGA+GGG | 0.600569 | 4_4:+4905295 | None:intergenic |
| ATGGTGAGGAGGGGTTGAAG+GGG | 0.612762 | 4_4:-4907281 | Msa0665440:CDS |
| GGTGGAATGGGTGATATGGG+TGG | 0.613503 | 4_4:-4907129 | Msa0665440:CDS |
| AAGGAAGCCTACTACAGTTG+AGG | 0.616465 | 4_4:-4905537 | Msa0665440:CDS |
| CGATTTGAAGAAGAAGAGGA+AGG | 0.618244 | 4_4:+4908486 | None:intergenic |
| CATACTGTCTTCAAGAGGGA+CGG | 0.632225 | 4_4:-4905389 | Msa0665440:CDS |
| GCCTCATACTGTCTTCAAGA+GGG | 0.644262 | 4_4:-4905393 | Msa0665440:CDS |
| AGAGATGTTACTGATTCCAG+CGG | 0.648475 | 4_4:-4906925 | Msa0665440:CDS |
| TCTTTGAAACCCGAAGAACT+CGG | 0.650196 | 4_4:+4907161 | None:intergenic |
| GAGATGTTACTGATTCCAGC+GGG | 0.654951 | 4_4:-4906924 | Msa0665440:intron |
| TCATCCCTAAACATTCCCCT+CGG | 0.655585 | 4_4:+4907084 | None:intergenic |
| ATCTTCGTAAACACCAGTGG+TGG | 0.656515 | 4_4:-4905102 | Msa0665440:exon |
| AGCCTCATACTGTCTTCAAG+AGG | 0.661585 | 4_4:-4905394 | Msa0665440:CDS |
| GGTGCATCTGGCTTTCCGAG+GGG | 0.666004 | 4_4:-4907099 | Msa0665440:CDS |
| CCGGTTCAATCCGAGAAGTG+CGG | 0.669023 | 4_4:-4907196 | Msa0665440:CDS |
| AAATAACTACCCTCGATGGG+AGG | 0.669398 | 4_4:-4905304 | Msa0665440:CDS |
| AAGGATCTGCCAATGTGATG+AGG | 0.672645 | 4_4:-4907029 | Msa0665440:CDS |
| CCGTAAGATTCCTCCCATCG+AGG | 0.673715 | 4_4:+4905294 | None:intergenic |
| GACATCTTCGTAAACACCAG+TGG | 0.677032 | 4_4:-4905105 | Msa0665440:exon |
| GTATGATCAATATGGTGAGG+AGG | 0.684615 | 4_4:-4907292 | Msa0665440:CDS |
| GACTAATGATGGTGTTGACG+GGG | 0.692431 | 4_4:+4905270 | None:intergenic |
| GAAAATCCACCTGCACCTGG+GGG | 0.703339 | 4_4:+4907249 | None:intergenic |
| TGTGTATGATCAATATGGTG+AGG | 0.703352 | 4_4:-4907295 | Msa0665440:CDS |
| GAGAAGGGAAATGAACAGAG+AGG | 0.703900 | 4_4:-4905455 | Msa0665440:CDS |
| ATGATCAATATGGTGAGGAG+GGG | 0.712167 | 4_4:-4907290 | Msa0665440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTGTGTAATTTTAAT+TGG | - | chr4_4:4905078-4905097 | Msa0665440:three_prime_UTR | 15.0% |
| !!! | TATCTTGTGTAATTTTAATT+GGG | - | chr4_4:4905079-4905098 | Msa0665440:three_prime_UTR | 15.0% |
| !!! | ATTTTATGATTTTGGATATT+TGG | - | chr4_4:4905622-4905641 | Msa0665440:intron | 15.0% |
| !! | ATAAACAGCTTAATTATATT+AGG | - | chr4_4:4906646-4906665 | Msa0665440:intron | 15.0% |
| !! | AAAGAATAATTTCATGAAAT+GGG | + | chr4_4:4907292-4907311 | None:intergenic | 15.0% |
| !!! | TTGGAATTTAATTTTATTTG+CGG | - | chr4_4:4908304-4908323 | Msa0665440:intron | 15.0% |
| !!! | TTCATATTTTATTTAGTTTC+TGG | - | chr4_4:4908413-4908432 | Msa0665440:CDS | 15.0% |
| !! | TGTAAAAGAAATATCCAAAT+GGG | + | chr4_4:4904809-4904828 | None:intergenic | 20.0% |
| !!! | TGTGAAGTTTTGATTTTTTT+TGG | - | chr4_4:4905116-4905135 | Msa0665440:CDS | 20.0% |
| !!! | GTGAAGTTTTGATTTTTTTT+GGG | - | chr4_4:4905117-4905136 | Msa0665440:CDS | 20.0% |
| !!! | TTTTGATTTTTTTTGGGTTT+TGG | - | chr4_4:4905123-4905142 | Msa0665440:CDS | 20.0% |
| !!! | TTTGATTTTTTTTGGGTTTT+GGG | - | chr4_4:4905124-4905143 | Msa0665440:CDS | 20.0% |
| !!! | TGTGTTTTTATTGTTGATTT+TGG | - | chr4_4:4905179-4905198 | Msa0665440:CDS | 20.0% |
| !!! | GGTGTTTAATTTTATGATTT+TGG | - | chr4_4:4905614-4905633 | Msa0665440:intron | 20.0% |
| !!! | ATTTTGGATATTTGGAATTT+TGG | - | chr4_4:4905630-4905649 | Msa0665440:intron | 20.0% |
| !!! | TTTTGGATATTTGGAATTTT+GGG | - | chr4_4:4905631-4905650 | Msa0665440:intron | 20.0% |
| !!! | TTGTTATTTTCTTGTGATTT+AGG | - | chr4_4:4905818-4905837 | Msa0665440:intron | 20.0% |
| !!! | TTTTTGTTTTGATTGTGATT+AGG | - | chr4_4:4905859-4905878 | Msa0665440:intron | 20.0% |
| !! | GAAAGAATAATTTCATGAAA+TGG | + | chr4_4:4907293-4907312 | None:intergenic | 20.0% |
| !! | TTAATTACTTCTTCATATGA+TGG | + | chr4_4:4908103-4908122 | None:intergenic | 20.0% |
| !! | TCATATGAAGAAGTAATTAA+AGG | - | chr4_4:4908103-4908122 | Msa0665440:intron | 20.0% |
| !!! | TTTAGTTATGTGAAAAGTTT+TGG | - | chr4_4:4908472-4908491 | Msa0665440:exon | 20.0% |
| ! | GTGTAAAAGAAATATCCAAA+TGG | + | chr4_4:4904810-4904829 | None:intergenic | 25.0% |
| !! | TTCAGAGATTTGCTTAAATT+TGG | + | chr4_4:4905026-4905045 | None:intergenic | 25.0% |
| !!! | TTGATTTTTTTTGGGTTTTG+GGG | - | chr4_4:4905125-4905144 | Msa0665440:CDS | 25.0% |
| !!! | ATTGTTGATTTTGGATCATT+TGG | - | chr4_4:4905188-4905207 | Msa0665440:CDS | 25.0% |
| !!! | TGTGTTTTTCTTGTTGATTT+TGG | - | chr4_4:4905252-4905271 | Msa0665440:CDS | 25.0% |
| !!! | TGGATCATTTGTTTGATTTT+TGG | - | chr4_4:4905272-4905291 | Msa0665440:CDS | 25.0% |
| !!! | GGATCATTTGTTTGATTTTT+GGG | - | chr4_4:4905273-4905292 | Msa0665440:CDS | 25.0% |
| !!! | GATCATTTGTTTGATTTTTG+GGG | - | chr4_4:4905274-4905293 | Msa0665440:CDS | 25.0% |
| !!! | ATTTTTGGGGTTGTAAAATT+TGG | - | chr4_4:4905287-4905306 | Msa0665440:CDS | 25.0% |
| !! | TTGTAAAATTTGGAATGTTG+AGG | - | chr4_4:4905297-4905316 | Msa0665440:CDS | 25.0% |
| !! | TGTAAAATTTGGAATGTTGA+GGG | - | chr4_4:4905298-4905317 | Msa0665440:CDS | 25.0% |
| !!! | ATTTGGAATTGTGAAGTTTT+AGG | - | chr4_4:4905423-4905442 | Msa0665440:CDS | 25.0% |
| !!! | TTTGGAATTGTGAAGTTTTA+GGG | - | chr4_4:4905424-4905443 | Msa0665440:CDS | 25.0% |
| !! | TTGTGTTTTTCTTGTGATTT+TGG | - | chr4_4:4905477-4905496 | Msa0665440:CDS | 25.0% |
| !! | TTTTGTGATTTTGGATCATA+TGG | - | chr4_4:4905554-4905573 | Msa0665440:intron | 25.0% |
| !! | AGGATTACAATTTGGAATTA+AGG | - | chr4_4:4905591-4905610 | Msa0665440:intron | 25.0% |
| !! | GGATTACAATTTGGAATTAA+GGG | - | chr4_4:4905592-4905611 | Msa0665440:intron | 25.0% |
| !! | GATTACAATTTGGAATTAAG+GGG | - | chr4_4:4905593-4905612 | Msa0665440:intron | 25.0% |
| !!! | ATTTGGAATTTTGGGTTTTT+TGG | - | chr4_4:4905639-4905658 | Msa0665440:intron | 25.0% |
| !!! | TTTGGAATTTTGGGTTTTTT+GGG | - | chr4_4:4905640-4905659 | Msa0665440:intron | 25.0% |
| !! | TTGTGTTTTTCTTGTGATTT+AGG | - | chr4_4:4905477-4905496 | Msa0665440:CDS | 25.0% |
| ! | TTAGGATTACTTGGAAATTT+CGG | - | chr4_4:4905704-4905723 | Msa0665440:intron | 25.0% |
| !!! | GGTGTTTATTTTTGTGTTTT+TGG | - | chr4_4:4905748-4905767 | Msa0665440:intron | 25.0% |
| !!! | TGAGATGTTTTTGAAATGTT+GGG | - | chr4_4:4905925-4905944 | Msa0665440:intron | 25.0% |
| !! | TCTTGTGATTTAGAATCATT+TGG | - | chr4_4:4905966-4905985 | Msa0665440:intron | 25.0% |
| !! | TTAGAATCATTTGGAATTGT+TGG | - | chr4_4:4905975-4905994 | Msa0665440:intron | 25.0% |
| ! | AATTCCTAAAAGAAGAGAAA+AGG | + | chr4_4:4906290-4906309 | None:intergenic | 25.0% |
| !!! | TTTCTCTTCTTTTAGGAATT+CGG | - | chr4_4:4906290-4906309 | Msa0665440:intron | 25.0% |
| !!! | TCTGGAAATCTTCATTTTTT+TGG | + | chr4_4:4906406-4906425 | None:intergenic | 25.0% |
| !!! | TGTATTTTGTTATGTGTTGT+TGG | - | chr4_4:4906546-4906565 | Msa0665440:intron | 25.0% |
| ! | AAATAATCAAATTTCCGCTA+AGG | - | chr4_4:4906614-4906633 | Msa0665440:intron | 25.0% |
| !!! | GTTGTTTTCATAAGCTATAT+TGG | - | chr4_4:4906731-4906750 | Msa0665440:intron | 25.0% |
| ! | AATAAGCTAAAAACAGCTTA+TGG | - | chr4_4:4906766-4906785 | Msa0665440:intron | 25.0% |
| ! | TGATACTTGTAGTTCTTAAA+TGG | - | chr4_4:4906952-4906971 | Msa0665440:CDS | 25.0% |
| ! | GAATGAAATAGCATATAGAA+AGG | + | chr4_4:4906990-4907009 | None:intergenic | 25.0% |
| !! | CAAAATAATTCTTCTTTTGC+TGG | - | chr4_4:4907009-4907028 | Msa0665440:CDS | 25.0% |
| ! | ATAAACATGATGAAGAATGT+TGG | + | chr4_4:4907065-4907084 | None:intergenic | 25.0% |
| ! | TGCAATAAGACATGTTTAAA+TGG | - | chr4_4:4907179-4907198 | Msa0665440:CDS | 25.0% |
| !! | GTTTTATGAGTAAATGACTT+TGG | + | chr4_4:4907468-4907487 | None:intergenic | 25.0% |
| !!! | TAGAAAGTGTTGTCATATAA+CGG | + | chr4_4:4907628-4907647 | None:intergenic | 25.0% |
| !! | TGTATGTTTTCTTATTCTGA+AGG | - | chr4_4:4907792-4907811 | Msa0665440:intron | 25.0% |
| ! | ATCTAACACATCTTCATATA+TGG | + | chr4_4:4908284-4908303 | None:intergenic | 25.0% |
| ! | ATATGAAGATGTGTTAGATT+TGG | - | chr4_4:4908285-4908304 | Msa0665440:intron | 25.0% |
| !!! | TTGTGAACTAGTTTTTAACT+AGG | - | chr4_4:4908355-4908374 | Msa0665440:CDS | 25.0% |
| ! | TGAATAATTCTCTTAATCAC+TGG | - | chr4_4:4908445-4908464 | Msa0665440:CDS | 25.0% |
| !! | AACTTTTCACATAACTAAAC+AGG | + | chr4_4:4908471-4908490 | None:intergenic | 25.0% |
| ! | TAACACATTTTTCACCCATT+TGG | - | chr4_4:4904792-4904811 | Msa0665440:three_prime_UTR | 30.0% |
| ! | TTGTTATTAGGGTTCTTATC+AGG | + | chr4_4:4904989-4905008 | None:intergenic | 30.0% |
| !! | CAGCATCTTTCTTGTTATTA+GGG | + | chr4_4:4905000-4905019 | None:intergenic | 30.0% |
| !! | TCAGCATCTTTCTTGTTATT+AGG | + | chr4_4:4905001-4905020 | None:intergenic | 30.0% |
| TTTGGATCATTTGGAAACTT+TGG | - | chr4_4:4905197-4905216 | Msa0665440:CDS | 30.0% | |
| TTGGATCATTTGGAAACTTT+GGG | - | chr4_4:4905198-4905217 | Msa0665440:CDS | 30.0% | |
| !!! | GCTTTTTTCGTTGTTGATTT+TGG | - | chr4_4:4905335-4905354 | Msa0665440:CDS | 30.0% |
| !!! | GTTGTTGATTTTGGATCATT+TGG | - | chr4_4:4905344-4905363 | Msa0665440:CDS | 30.0% |
| ! | TTTGGATCATTTGGACATTT+TGG | - | chr4_4:4905353-4905372 | Msa0665440:CDS | 30.0% |
| ! | TTGGATCATTTGGACATTTT+GGG | - | chr4_4:4905354-4905373 | Msa0665440:CDS | 30.0% |
| !! | GTGTTTGATTTTGGATCATT+TGG | - | chr4_4:4905406-4905425 | Msa0665440:CDS | 30.0% |
| !!! | GAAGTTTTAGGGTTACAATT+TGG | - | chr4_4:4905435-4905454 | Msa0665440:CDS | 30.0% |
| ! | TAGGGTTACAATTTGGAATA+TGG | - | chr4_4:4905442-4905461 | Msa0665440:CDS | 30.0% |
| ! | AGGGTTACAATTTGGAATAT+GGG | - | chr4_4:4905443-4905462 | Msa0665440:CDS | 30.0% |
| ! | TTCTTGTGATTTTGGACATT+TGG | - | chr4_4:4905485-4905504 | Msa0665440:CDS | 30.0% |
| !!! | ATTTGGAGTTTTGAGGTTTT+AGG | - | chr4_4:4905502-4905521 | Msa0665440:CDS | 30.0% |
| !!! | AGGTTTACAATTTTAGCTGA+TGG | - | chr4_4:4905522-4905541 | Msa0665440:CDS | 30.0% |
| !!! | GGTTTACAATTTTAGCTGAT+GGG | - | chr4_4:4905523-4905542 | Msa0665440:CDS | 30.0% |
| !!! | GTTTACAATTTTAGCTGATG+GGG | - | chr4_4:4905524-4905543 | Msa0665440:CDS | 30.0% |
| !! | GGTGTTTGATTTTGTGATTT+TGG | - | chr4_4:4905545-4905564 | Msa0665440:intron | 30.0% |
| ATATGGAATTGTGAAGTTTC+AGG | - | chr4_4:4905571-4905590 | Msa0665440:intron | 30.0% | |
| GAAGTTTCAGGATTACAATT+TGG | - | chr4_4:4905583-4905602 | Msa0665440:intron | 30.0% | |
| !!! | TTGGAATTTTGGGTTTTTTG+GGG | - | chr4_4:4905641-4905660 | Msa0665440:intron | 30.0% |
| ! | TCTTGTGATTTAGGATTACT+TGG | - | chr4_4:4905695-4905714 | Msa0665440:intron | 30.0% |
| TAGGATTACTTGGAAATTTC+GGG | - | chr4_4:4905705-4905724 | Msa0665440:intron | 30.0% | |
| !!! | TTTTGTGTTTTTGGATCAGT+TGG | - | chr4_4:4905757-4905776 | Msa0665440:intron | 30.0% |
| ! | TTTTGGATCAGTTGGATTTT+CGG | - | chr4_4:4905765-4905784 | Msa0665440:intron | 30.0% |
| ! | GGGTTACAATTTGAAATGTT+GGG | - | chr4_4:4905786-4905805 | Msa0665440:intron | 30.0% |
| ! | GGTTACAATTTGAAATGTTG+GGG | - | chr4_4:4905787-4905806 | Msa0665440:intron | 30.0% |
| ! | GTTACAATTTGAAATGTTGG+GGG | - | chr4_4:4905788-4905807 | Msa0665440:intron | 30.0% |
| ! | TCTTGTGATTTAGGATCATT+TGG | - | chr4_4:4905827-4905846 | Msa0665440:intron | 30.0% |
| !!! | GTGAGATGTTTTTGAAATGT+TGG | - | chr4_4:4905924-4905943 | Msa0665440:intron | 30.0% |
| !!! | GAGATGTTTTTGAAATGTTG+GGG | - | chr4_4:4905926-4905945 | Msa0665440:intron | 30.0% |
| ! | AGTGATTTCGATTTGTGAAT+AGG | - | chr4_4:4906005-4906024 | Msa0665440:intron | 30.0% |
| ! | ATGACCTTTTCTCTTCTTTT+AGG | - | chr4_4:4906283-4906302 | Msa0665440:intron | 30.0% |
| AGTTTGGAGGATTTGTATAA+AGG | - | chr4_4:4906375-4906394 | Msa0665440:intron | 30.0% | |
| GTTTGGAGGATTTGTATAAA+GGG | - | chr4_4:4906376-4906395 | Msa0665440:intron | 30.0% | |
| !!! | GGAAATCTTCATTTTTTTGG+TGG | + | chr4_4:4906403-4906422 | None:intergenic | 30.0% |
| CAATGCAACTAGGTTAATAT+AGG | + | chr4_4:4906475-4906494 | None:intergenic | 30.0% | |
| CTATATTAACCTAGTTGCAT+TGG | - | chr4_4:4906473-4906492 | Msa0665440:intron | 30.0% | |
| TCAAATAAGCCAATCTAAAC+AGG | - | chr4_4:4906857-4906876 | Msa0665440:intron | 30.0% | |
| TTATTATGGCCTGTTTAGAT+TGG | + | chr4_4:4906869-4906888 | None:intergenic | 30.0% | |
| !! | CAAAATCTGCCACTTTATTA+TGG | + | chr4_4:4906883-4906902 | None:intergenic | 30.0% |
| GTGATGTGATGTAACTATTA+AGG | - | chr4_4:4907132-4907151 | Msa0665440:CDS | 30.0% | |
| TTGTCTAAAAAACTTGAGTC+TGG | + | chr4_4:4907236-4907255 | None:intergenic | 30.0% | |
| TATTAGAGCTGTGAATTGAA+TGG | - | chr4_4:4907753-4907772 | Msa0665440:intron | 30.0% | |
| ! | AGGAACAAAGATAACTTTTC+CGG | - | chr4_4:4907871-4907890 | Msa0665440:intron | 30.0% |
| ATAATAAAAACAAGGTCTGC+AGG | + | chr4_4:4907926-4907945 | None:intergenic | 30.0% | |
| TCTCGTCGATAATAAAAACA+AGG | + | chr4_4:4907934-4907953 | None:intergenic | 30.0% | |
| !! | TTCATATGATGGACTAATGA+TGG | + | chr4_4:4908092-4908111 | None:intergenic | 30.0% |
| TGAAGAAGTAATTAAAGGAG+AGG | - | chr4_4:4908108-4908127 | Msa0665440:intron | 30.0% | |
| GAAGAAGTAATTAAAGGAGA+GGG | - | chr4_4:4908109-4908128 | Msa0665440:intron | 30.0% | |
| ! | ATTTGCGGTTTTCAATCAAT+TGG | - | chr4_4:4908319-4908338 | Msa0665440:CDS | 30.0% |
| TTCAATCAATTGGAAATTCG+TGG | - | chr4_4:4908329-4908348 | Msa0665440:CDS | 30.0% | |
| GTGTACATCAATTGATGAAA+TGG | + | chr4_4:4908562-4908581 | None:intergenic | 30.0% | |
| GGGTGAAAAATGTGTTATCT+GGG | + | chr4_4:4904789-4904808 | None:intergenic | 35.0% | |
| TGGGTGAAAAATGTGTTATC+TGG | + | chr4_4:4904790-4904809 | None:intergenic | 35.0% | |
| CTTCCTCTTCTTCTTCAAAT+CGG | - | chr4_4:4904863-4904882 | Msa0665440:three_prime_UTR | 35.0% | |
| ! | AATCCGATTTGAAGAAGAAG+AGG | + | chr4_4:4904869-4904888 | None:intergenic | 35.0% |
| TCTTCTTCAAATCGGATTCA+TGG | - | chr4_4:4904871-4904890 | Msa0665440:three_prime_UTR | 35.0% | |
| CTTCTTCAAATCGGATTCAT+GGG | - | chr4_4:4904872-4904891 | Msa0665440:three_prime_UTR | 35.0% | |
| TTGCATTTCGATCTATCTGA+AGG | + | chr4_4:4904916-4904935 | None:intergenic | 35.0% | |
| !! | ATCGCAAACTTGCTATGAAA+TGG | - | chr4_4:4904960-4904979 | Msa0665440:three_prime_UTR | 35.0% |
| TGGATCATTTGGAAACTTTG+GGG | - | chr4_4:4905199-4905218 | Msa0665440:CDS | 35.0% | |
| GGGCTACAATTTGAATTGAT+GGG | - | chr4_4:4905219-4905238 | Msa0665440:CDS | 35.0% | |
| GGCTACAATTTGAATTGATG+GGG | - | chr4_4:4905220-4905239 | Msa0665440:CDS | 35.0% | |
| GCTACAATTTGAATTGATGG+GGG | - | chr4_4:4905221-4905240 | Msa0665440:CDS | 35.0% | |
| ! | AAAATTTGGAATGTTGAGGG+TGG | - | chr4_4:4905301-4905320 | Msa0665440:CDS | 35.0% |
| ! | TGGATCATTTGGACATTTTG+GGG | - | chr4_4:4905355-4905374 | Msa0665440:CDS | 35.0% |
| !!! | TTTGGACATTTTGGGGTTTT+TGG | - | chr4_4:4905362-4905381 | Msa0665440:CDS | 35.0% |
| !!! | TTGGACATTTTGGGGTTTTT+GGG | - | chr4_4:4905363-4905382 | Msa0665440:CDS | 35.0% |
| ! | GGGTTACAATTTGGAATATG+GGG | - | chr4_4:4905444-4905463 | Msa0665440:CDS | 35.0% |
| !! | TTTGGACATTTGGAGTTTTG+AGG | - | chr4_4:4905495-4905514 | Msa0665440:CDS | 35.0% |
| !!! | GGTTTTTTGGGGTTACAATT+TGG | - | chr4_4:4905652-4905671 | Msa0665440:intron | 35.0% |
| ! | TTTGGGGTTACAATTTGGAT+TGG | - | chr4_4:4905657-4905676 | Msa0665440:intron | 35.0% |
| AGGATTACTTGGAAATTTCG+GGG | - | chr4_4:4905706-4905725 | Msa0665440:intron | 35.0% | |
| GAAATTTCGGGGTTACAATT+TGG | - | chr4_4:4905717-4905736 | Msa0665440:intron | 35.0% | |
| ! | GGTTACAATTTGGAATGATG+AGG | - | chr4_4:4905727-4905746 | Msa0665440:intron | 35.0% |
| ! | TTTGGATCAGTTGGATTTTC+GGG | - | chr4_4:4905766-4905785 | Msa0665440:intron | 35.0% |
| ! | CGGGTTACAATTTGAAATGT+TGG | - | chr4_4:4905785-4905804 | Msa0665440:intron | 35.0% |
| AGAGCTGTGTATGATCAATA+TGG | - | chr4_4:4906048-4906067 | Msa0665440:intron | 35.0% | |
| TGTGTATGATCAATATGGTG+AGG | - | chr4_4:4906053-4906072 | Msa0665440:intron | 35.0% | |
| TATGATCAATATGGTGAGGA+GGG | - | chr4_4:4906057-4906076 | Msa0665440:intron | 35.0% | |
| ! | GACATATTTTCCGAGTTCTT+CGG | - | chr4_4:4906177-4906196 | Msa0665440:intron | 35.0% |
| ! | ACATATTTTCCGAGTTCTTC+GGG | - | chr4_4:4906178-4906197 | Msa0665440:intron | 35.0% |
| CTAGGTTAATATAGGTTAGC+AGG | + | chr4_4:4906467-4906486 | None:intergenic | 35.0% | |
| CCAATAAAACCAATGCAACT+AGG | + | chr4_4:4906485-4906504 | None:intergenic | 35.0% | |
| !!! | CCTAGTTGCATTGGTTTTAT+TGG | - | chr4_4:4906482-4906501 | Msa0665440:intron | 35.0% |
| ATTAAGCTGTTTATCCGAAC+AGG | + | chr4_4:4906640-4906659 | None:intergenic | 35.0% | |
| TTATGGAAACAGCTTATGAC+AGG | + | chr4_4:4906793-4906812 | None:intergenic | 35.0% | |
| TAAAGACTTGTGAGTCTGTT+TGG | + | chr4_4:4906822-4906841 | None:intergenic | 35.0% | |
| CTAAACAGGCCATAATAAAG+TGG | - | chr4_4:4906871-4906890 | Msa0665440:intron | 35.0% | |
| ! | GCTTCAGTTCTACTATTTTC+TGG | + | chr4_4:4907391-4907410 | None:intergenic | 35.0% |
| AAGCTACAAAGTTACGTTGT+TGG | - | chr4_4:4907407-4907426 | Msa0665440:intron | 35.0% | |
| GATGTATTCAAAAGCTGTGT+TGG | - | chr4_4:4907553-4907572 | Msa0665440:intron | 35.0% | |
| AGAATTTCCTCAACTGTAGT+AGG | + | chr4_4:4907821-4907840 | None:intergenic | 35.0% | |
| ! | AAAGATAACTTTTCCGGAGA+AGG | - | chr4_4:4907877-4907896 | Msa0665440:intron | 35.0% |
| ! | AAGATAACTTTTCCGGAGAA+GGG | - | chr4_4:4907878-4907897 | Msa0665440:intron | 35.0% |
| ACACATCTTCATATATGGCT+GGG | + | chr4_4:4908279-4908298 | None:intergenic | 35.0% | |
| AACACATCTTCATATATGGC+TGG | + | chr4_4:4908280-4908299 | None:intergenic | 35.0% | |
| TTGGTGTGTGTTTGCATATT+TGG | - | chr4_4:4908491-4908510 | Msa0665440:five_prime_UTR | 35.0% | |
| CGATTTGAAGAAGAAGAGGA+AGG | + | chr4_4:4904865-4904884 | None:intergenic | 40.0% | |
| TGGGGTTGTAAATTGCATGT+TGG | - | chr4_4:4905143-4905162 | Msa0665440:CDS | 40.0% | |
| GGGGTTGTAAATTGCATGTT+GGG | - | chr4_4:4905144-4905163 | Msa0665440:CDS | 40.0% | |
| GGGGCTACAATTTGAATTGA+TGG | - | chr4_4:4905218-4905237 | Msa0665440:CDS | 40.0% | |
| !!! | ACATTTTGGGGTTTTTGGGT+TGG | - | chr4_4:4905367-4905386 | Msa0665440:CDS | 40.0% |
| !!! | TGGGTTGGTATTTTAGCTGA+TGG | - | chr4_4:4905382-4905401 | Msa0665440:CDS | 40.0% |
| !!! | GGGTTGGTATTTTAGCTGAT+GGG | - | chr4_4:4905383-4905402 | Msa0665440:CDS | 40.0% |
| !!! | GGTTGGTATTTTAGCTGATG+GGG | - | chr4_4:4905384-4905403 | Msa0665440:CDS | 40.0% |
| TGATCATACACCTCTCTCTT+TGG | + | chr4_4:4905899-4905918 | None:intergenic | 40.0% | |
| ! | AGAGAGGTGTATGATCAGTA+TGG | - | chr4_4:4905902-4905921 | Msa0665440:intron | 40.0% |
| ! | TCATACACAGCTCTCTTTTG+TGG | + | chr4_4:4906042-4906061 | None:intergenic | 40.0% |
| GTATGATCAATATGGTGAGG+AGG | - | chr4_4:4906056-4906075 | Msa0665440:intron | 40.0% | |
| ATGATCAATATGGTGAGGAG+GGG | - | chr4_4:4906058-4906077 | Msa0665440:intron | 40.0% | |
| AATATGTCATCCGCACTTCT+CGG | + | chr4_4:4906165-4906184 | None:intergenic | 40.0% | |
| !! | TCTTTGAAACCCGAAGAACT+CGG | + | chr4_4:4906190-4906209 | None:intergenic | 40.0% |
| ! | TTCGGGTTTCAAAGACCATT+TGG | - | chr4_4:4906195-4906214 | Msa0665440:intron | 40.0% |
| !! | TCTTCTTTTAGGAATTCGGC+CGG | - | chr4_4:4906294-4906313 | Msa0665440:intron | 40.0% |
| ! | TGCACTTTTCCTCATCACAT+TGG | + | chr4_4:4906331-4906350 | None:intergenic | 40.0% |
| CAAGGCAATGTTCTCTCTAT+CGG | + | chr4_4:4906354-4906373 | None:intergenic | 40.0% | |
| TACAAATCCTCCAAACTGCA+AGG | + | chr4_4:4906372-4906391 | None:intergenic | 40.0% | |
| !! | AGAGATGTTACTGATTCCAG+CGG | - | chr4_4:4906423-4906442 | Msa0665440:intron | 40.0% |
| AGTCTGTTTGGAAGAGCTTA+TGG | + | chr4_4:4906810-4906829 | None:intergenic | 40.0% | |
| ! | TAAAGTGGCAGATTTTGCGA+TGG | - | chr4_4:4906886-4906905 | Msa0665440:intron | 40.0% |
| CCTTCAATTTCCTACAGCAT+CGG | + | chr4_4:4907330-4907349 | None:intergenic | 40.0% | |
| !! | GTTCTACTATTTTCTGGCAC+AGG | + | chr4_4:4907385-4907404 | None:intergenic | 40.0% |
| TTAAAATTCCGCTGTGCTGT+AGG | - | chr4_4:4907681-4907700 | Msa0665440:intron | 40.0% | |
| TAAAATTCCGCTGTGCTGTA+GGG | - | chr4_4:4907682-4907701 | Msa0665440:intron | 40.0% | |
| CTAACAATTGAGATCAAGCC+AGG | - | chr4_4:4907839-4907858 | Msa0665440:intron | 40.0% | |
| TTTGTTCCTTTCTTCCAACC+TGG | + | chr4_4:4907860-4907879 | None:intergenic | 40.0% | |
| AAACAAGGTCTGCAGGTATA+AGG | + | chr4_4:4907919-4907938 | None:intergenic | 40.0% | |
| ! | TGGACTAATGATGGTGTTGA+CGG | + | chr4_4:4908083-4908102 | None:intergenic | 40.0% |
| TTGGAAGGTTCCTTAGGAAT+TGG | + | chr4_4:4908139-4908158 | None:intergenic | 40.0% | |
| TCCTAAGGAACCTTCCAAAA+AGG | - | chr4_4:4908141-4908160 | Msa0665440:intron | 40.0% | |
| CCTAAGGAACCTTCCAAAAA+GGG | - | chr4_4:4908142-4908161 | Msa0665440:intron | 40.0% | |
| ! | CTCAAGTTTCCCTTTTTGGA+AGG | + | chr4_4:4908154-4908173 | None:intergenic | 40.0% |
| ! | GACTCTCAAGTTTCCCTTTT+TGG | + | chr4_4:4908158-4908177 | None:intergenic | 40.0% |
| TGCTCTGATGTAAGTCTTGA+TGG | + | chr4_4:4908199-4908218 | None:intergenic | 40.0% | |
| TGTCAATAATCGCTTGATGC+CGG | + | chr4_4:4908227-4908246 | None:intergenic | 40.0% | |
| !! | GCTGATGGGGTGTTTGATTT+TGG | - | chr4_4:4905397-4905416 | Msa0665440:CDS | 45.0% |
| GAGTGATCAACCAAAGAGAG+AGG | - | chr4_4:4905886-4905905 | Msa0665440:intron | 45.0% | |
| GGATTGAACCGGAACATTGT+CGG | + | chr4_4:4906144-4906163 | None:intergenic | 45.0% | |
| GGGTTTCAAAGACCATTTGG+CGG | - | chr4_4:4906198-4906217 | Msa0665440:intron | 45.0% | |
| TTTCAAAGACCATTTGGCGG+TGG | - | chr4_4:4906201-4906220 | Msa0665440:intron | 45.0% | |
| CTTTCCGAGGGGAATGTTTA+GGG | - | chr4_4:4906260-4906279 | Msa0665440:intron | 45.0% | |
| TCATCCCTAAACATTCCCCT+CGG | + | chr4_4:4906267-4906286 | None:intergenic | 45.0% | |
| AAGGATCTGCCAATGTGATG+AGG | - | chr4_4:4906319-4906338 | Msa0665440:intron | 45.0% | |
| GAGAACATTGCCTTGCAGTT+TGG | - | chr4_4:4906359-4906378 | Msa0665440:intron | 45.0% | |
| AACATTGCCTTGCAGTTTGG+AGG | - | chr4_4:4906362-4906381 | Msa0665440:intron | 45.0% | |
| GCTGGAATCAGTAACATCTC+TGG | + | chr4_4:4906424-4906443 | None:intergenic | 45.0% | |
| !! | GAGATGTTACTGATTCCAGC+GGG | - | chr4_4:4906424-4906443 | Msa0665440:intron | 45.0% |
| AAACTAGAAAACTCACCCGC+TGG | + | chr4_4:4906442-4906461 | None:intergenic | 45.0% | |
| AATTTCCGCTAAGGCCTGTT+CGG | - | chr4_4:4906623-4906642 | Msa0665440:intron | 45.0% | |
| TTTATCCGAACAGGCCTTAG+CGG | + | chr4_4:4906631-4906650 | None:intergenic | 45.0% | |
| CCGATGCTGTAGGAAATTGA+AGG | - | chr4_4:4907327-4907346 | Msa0665440:intron | 45.0% | |
| AAGGAAGCCTACTACAGTTG+AGG | - | chr4_4:4907811-4907830 | Msa0665440:intron | 45.0% | |
| CAATTGAGATCAAGCCAGGT+TGG | - | chr4_4:4907843-4907862 | Msa0665440:intron | 45.0% | |
| ! | ATCAAGCCAGGTTGGAAGAA+AGG | - | chr4_4:4907851-4907870 | Msa0665440:intron | 45.0% |
| CTCTGTTCATTTCCCTTCTC+CGG | + | chr4_4:4907893-4907912 | None:intergenic | 45.0% | |
| GAGAAGGGAAATGAACAGAG+AGG | - | chr4_4:4907893-4907912 | Msa0665440:intron | 45.0% | |
| AGCCTCATACTGTCTTCAAG+AGG | - | chr4_4:4907954-4907973 | Msa0665440:intron | 45.0% | |
| GCCTCATACTGTCTTCAAGA+GGG | - | chr4_4:4907955-4907974 | Msa0665440:intron | 45.0% | |
| TCCCTCTTGAAGACAGTATG+AGG | + | chr4_4:4907959-4907978 | None:intergenic | 45.0% | |
| CATACTGTCTTCAAGAGGGA+CGG | - | chr4_4:4907959-4907978 | Msa0665440:intron | 45.0% | |
| ! | TCTCTTGTAGAAGCTCTGAC+AGG | - | chr4_4:4908010-4908029 | Msa0665440:intron | 45.0% |
| CCCATCGAGGGTAGTTATTT+GGG | + | chr4_4:4908044-4908063 | None:intergenic | 45.0% | |
| CCCAAATAACTACCCTCGAT+GGG | - | chr4_4:4908041-4908060 | Msa0665440:intron | 45.0% | |
| TCCCATCGAGGGTAGTTATT+TGG | + | chr4_4:4908045-4908064 | None:intergenic | 45.0% | |
| AAATAACTACCCTCGATGGG+AGG | - | chr4_4:4908044-4908063 | Msa0665440:intron | 45.0% | |
| !! | GACTAATGATGGTGTTGACG+GGG | + | chr4_4:4908081-4908100 | None:intergenic | 45.0% |
| !! | GGACTAATGATGGTGTTGAC+GGG | + | chr4_4:4908082-4908101 | None:intergenic | 45.0% |
| ! | AGAGGGTATGCCAATTCCTA+AGG | - | chr4_4:4908126-4908145 | Msa0665440:intron | 45.0% |
| !! | CCCTTTTTGGAAGGTTCCTT+AGG | + | chr4_4:4908145-4908164 | None:intergenic | 45.0% |
| CTTACATCAGAGCAGAAGAC+CGG | - | chr4_4:4908205-4908224 | Msa0665440:intron | 45.0% | |
| GACATCTTCGTAAACACCAG+TGG | - | chr4_4:4908243-4908262 | Msa0665440:intron | 45.0% | |
| ATCTTCGTAAACACCAGTGG+TGG | - | chr4_4:4908246-4908265 | Msa0665440:intron | 45.0% | |
| TCTTCATATATGGCTGGGAG+AGG | + | chr4_4:4908274-4908293 | None:intergenic | 45.0% | |
| ATATGGTGAGGAGGGGTTGA+AGG | - | chr4_4:4906065-4906084 | Msa0665440:intron | 50.0% | |
| TATGGTGAGGAGGGGTTGAA+GGG | - | chr4_4:4906066-4906085 | Msa0665440:intron | 50.0% | |
| AGAAAATCCACCTGCACCTG+GGG | + | chr4_4:4906103-4906122 | None:intergenic | 50.0% | |
| CAGAAAATCCACCTGCACCT+GGG | + | chr4_4:4906104-4906123 | None:intergenic | 50.0% | |
| TCAGAAAATCCACCTGCACC+TGG | + | chr4_4:4906105-4906124 | None:intergenic | 50.0% | |
| !! | GGTGCAGGTGGATTTTCTGA+CGG | - | chr4_4:4906105-4906124 | Msa0665440:intron | 50.0% |
| AAGACCATTTGGCGGTGGAA+TGG | - | chr4_4:4906206-4906225 | Msa0665440:intron | 50.0% | |
| AGACCATTTGGCGGTGGAAT+GGG | - | chr4_4:4906207-4906226 | Msa0665440:intron | 50.0% | |
| GCTTTCCGAGGGGAATGTTT+AGG | - | chr4_4:4906259-4906278 | Msa0665440:intron | 50.0% | |
| TTTAGGAATTCGGCCGGTGA+AGG | - | chr4_4:4906300-4906319 | Msa0665440:intron | 50.0% | |
| CACATTGGCAGATCCTTCAC+CGG | + | chr4_4:4906316-4906335 | None:intergenic | 50.0% | |
| CATTGTCTAGCCGATGCTGT+AGG | - | chr4_4:4907317-4907336 | Msa0665440:CDS | 50.0% | |
| ! | TGAGTATCGCAGAACAGCAG+TGG | - | chr4_4:4907654-4907673 | Msa0665440:intron | 50.0% |
| GCCCAAATAACTACCCTCGA+TGG | - | chr4_4:4908040-4908059 | Msa0665440:intron | 50.0% | |
| CGTAAGATTCCTCCCATCGA+GGG | + | chr4_4:4908056-4908075 | None:intergenic | 50.0% | |
| CCTCGATGGGAGGAATCTTA+CGG | - | chr4_4:4908054-4908073 | Msa0665440:intron | 50.0% | |
| ATGGTGAGGAGGGGTTGAAG+GGG | - | chr4_4:4906067-4906086 | Msa0665440:intron | 55.0% | |
| GAAAATCCACCTGCACCTGG+GGG | + | chr4_4:4906102-4906121 | None:intergenic | 55.0% | |
| !! | GCAGGTGGATTTTCTGACGG+CGG | - | chr4_4:4906108-4906127 | Msa0665440:intron | 55.0% |
| ! | GGATTTTCTGACGGCGGTGA+TGG | - | chr4_4:4906114-4906133 | Msa0665440:intron | 55.0% |
| !! | TTTTCTGACGGCGGTGATGG+TGG | - | chr4_4:4906117-4906136 | Msa0665440:intron | 55.0% |
| ! | TTTCTGACGGCGGTGATGGT+GGG | - | chr4_4:4906118-4906137 | Msa0665440:intron | 55.0% |
| !! | ATGGTGGGCCGACAATGTTC+CGG | - | chr4_4:4906133-4906152 | Msa0665440:intron | 55.0% |
| CCGCACTTCTCGGATTGAAC+CGG | + | chr4_4:4906155-4906174 | None:intergenic | 55.0% | |
| CCGGTTCAATCCGAGAAGTG+CGG | - | chr4_4:4906152-4906171 | Msa0665440:intron | 55.0% | |
| TCACCCATTCCACCGCCAAA+TGG | + | chr4_4:4906213-4906232 | None:intergenic | 55.0% | |
| TGGCGGTGGAATGGGTGATA+TGG | - | chr4_4:4906215-4906234 | Msa0665440:intron | 55.0% | |
| GGCGGTGGAATGGGTGATAT+GGG | - | chr4_4:4906216-4906235 | Msa0665440:intron | 55.0% | |
| GGTGGAATGGGTGATATGGG+TGG | - | chr4_4:4906219-4906238 | Msa0665440:intron | 55.0% | |
| GGTGATATGGGTGGTCATCC+TGG | - | chr4_4:4906228-4906247 | Msa0665440:intron | 55.0% | |
| !! | TGGTGCATCTGGCTTTCCGA+GGG | - | chr4_4:4906248-4906267 | Msa0665440:intron | 55.0% |
| ATAGCAGCCCTACAGCACAG+CGG | + | chr4_4:4907692-4907711 | None:intergenic | 55.0% | |
| CCGTAAGATTCCTCCCATCG+AGG | + | chr4_4:4908057-4908076 | None:intergenic | 55.0% | |
| GGTGGTCATCCTGGTGCATC+TGG | - | chr4_4:4906237-4906256 | Msa0665440:intron | 60.0% | |
| CTCGGAAAGCCAGATGCACC+AGG | + | chr4_4:4906249-4906268 | None:intergenic | 60.0% | |
| !! | CTGGTGCATCTGGCTTTCCG+AGG | - | chr4_4:4906247-4906266 | Msa0665440:intron | 60.0% |
| !! | GGTGCATCTGGCTTTCCGAG+GGG | - | chr4_4:4906249-4906268 | Msa0665440:intron | 60.0% |
| AATCCACCTGCACCTGGGGG+AGG | + | chr4_4:4906099-4906118 | None:intergenic | 65.0% | |
| !! | GCTGGGAGAGGTACCACCAC+TGG | + | chr4_4:4908262-4908281 | None:intergenic | 65.0% |
| AAGGGGCAGATGCCTCCCCC+AGG | - | chr4_4:4906084-4906103 | Msa0665440:intron | 70.0% | |
| CAGATGCCTCCCCCAGGTGC+AGG | - | chr4_4:4906090-4906109 | Msa0665440:intron | 70.0% | |
| ATGCCTCCCCCAGGTGCAGG+TGG | - | chr4_4:4906093-4906112 | Msa0665440:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 4904786 | 4908584 | 4904786 | ID=Msa0665440;Name=Msa0665440 |
| chr4_4 | mRNA | 4904786 | 4908584 | 4904786 | ID=Msa0665440-mRNA-1;Parent=Msa0665440;Name=Msa0665440-mRNA-1;_AED=0.19;_eAED=0.19;_QI=104|1|1|1|1|1|3|329|341 |
| chr4_4 | exon | 4904786 | 4905556 | 4904786 | ID=Msa0665440-mRNA-1:exon:1661;Parent=Msa0665440-mRNA-1 |
| chr4_4 | exon | 4906925 | 4907343 | 4906925 | ID=Msa0665440-mRNA-1:exon:1660;Parent=Msa0665440-mRNA-1 |
| chr4_4 | exon | 4908316 | 4908584 | 4908316 | ID=Msa0665440-mRNA-1:exon:1659;Parent=Msa0665440-mRNA-1 |
| chr4_4 | five_prime_UTR | 4908481 | 4908584 | 4908481 | ID=Msa0665440-mRNA-1:five_prime_utr;Parent=Msa0665440-mRNA-1 |
| chr4_4 | CDS | 4908316 | 4908480 | 4908316 | ID=Msa0665440-mRNA-1:cds;Parent=Msa0665440-mRNA-1 |
| chr4_4 | CDS | 4906925 | 4907343 | 4906925 | ID=Msa0665440-mRNA-1:cds;Parent=Msa0665440-mRNA-1 |
| chr4_4 | CDS | 4905115 | 4905556 | 4905115 | ID=Msa0665440-mRNA-1:cds;Parent=Msa0665440-mRNA-1 |
| chr4_4 | three_prime_UTR | 4904786 | 4905114 | 4904786 | ID=Msa0665440-mRNA-1:three_prime_utr;Parent=Msa0665440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
