AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0678040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678040 MtrunA17_Chr4g0022901 90.511 274 19 2 1 273 1 268 1.32e-175 485
Msa0678040 MtrunA17_Chr4g0022911 77.133 293 39 4 1 272 1 286 8.76e-154 431
Msa0678040 MtrunA17_Chr4g0022931 74.909 275 58 6 1 272 1 267 1.99e-133 378
Msa0678040 MtrunA17_Chr2g0323351 46.715 274 112 7 1 272 1 242 2.53e-75 230
Msa0678040 MtrunA17_Chr1g0187761 48.000 200 93 3 1 199 1 190 4.49e-58 186
Msa0678040 MtrunA17_Chr1g0167661 42.292 253 121 8 1 242 1 239 4.95e-58 186
Msa0678040 MtrunA17_Chr7g0274581 48.421 190 85 2 1 180 1 187 1.00e-57 183
Msa0678040 MtrunA17_Chr1g0167691 46.734 199 94 2 1 199 1 187 1.69e-57 184
Msa0678040 MtrunA17_Chr7g0261281 67.227 119 39 0 1 119 1 119 3.44e-56 182
Msa0678040 MtrunA17_Chr4g0022881 63.158 114 42 0 1 114 1 114 2.21e-54 176
Msa0678040 MtrunA17_Chr3g0115821 61.538 117 45 0 1 117 1 117 1.99e-53 177
Msa0678040 MtrunA17_Chr2g0323411 64.957 117 41 0 1 117 1 117 3.15e-53 176
Msa0678040 MtrunA17_Chr4g0042671 66.087 115 39 0 1 115 1 115 5.61e-53 177
Msa0678040 MtrunA17_Chr1g0203411 62.069 116 44 0 1 116 1 116 6.38e-53 174
Msa0678040 MtrunA17_Chr7g0228891 42.202 218 113 4 1 208 1 215 6.43e-53 173
Msa0678040 MtrunA17_Chr4g0039971 61.538 117 45 0 1 117 2 118 3.86e-52 174
Msa0678040 MtrunA17_Chr2g0323321 77.174 92 20 1 1 92 1 91 8.34e-52 165
Msa0678040 MtrunA17_Chr4g0057031 62.393 117 44 0 1 117 1 117 8.98e-52 170
Msa0678040 MtrunA17_Chr2g0281071 62.712 118 43 1 1 117 1 118 1.06e-51 172
Msa0678040 MtrunA17_Chr4g0070611 62.712 118 44 0 1 118 1 118 1.39e-51 171
Msa0678040 MtrunA17_Chr7g0217741 50.658 152 69 2 1 148 1 150 2.14e-51 171
Msa0678040 MtrunA17_Chr6g0453471 63.478 115 42 0 1 115 1 115 4.01e-51 171
Msa0678040 MtrunA17_Chr4g0048511 61.017 118 45 1 1 117 1 118 5.03e-51 171
Msa0678040 MtrunA17_Chr4g0070641 62.712 118 44 0 1 118 1 118 5.33e-51 165
Msa0678040 MtrunA17_Chr3g0110351 55.714 140 56 2 1 136 1 138 5.36e-51 169
Msa0678040 MtrunA17_Chr4g0022891 61.062 113 44 0 1 113 1 113 7.40e-51 167
Msa0678040 MtrunA17_Chr5g0434571 47.514 181 86 4 1 177 37 212 8.99e-51 170
Msa0678040 MtrunA17_Chr5g0410961 56.589 129 56 0 1 129 1 129 2.02e-50 169
Msa0678040 MtrunA17_Chr4g0037141 58.475 118 49 0 1 118 1 118 2.58e-50 167
Msa0678040 MtrunA17_Chr1g0193371 62.609 115 43 0 1 115 1 115 5.51e-50 169
Msa0678040 MtrunA17_Chr3g0131121 61.739 115 44 0 1 115 1 115 5.64e-50 166
Msa0678040 MtrunA17_Chr5g0395281 52.143 140 63 1 1 136 1 140 7.08e-50 166
Msa0678040 MtrunA17_Chr1g0193801 40.698 258 111 5 1 224 1 250 8.09e-50 169
Msa0678040 MtrunA17_Chr7g0275911 61.739 115 44 0 1 115 1 115 1.06e-49 164
Msa0678040 MtrunA17_Chr8g0346561 58.462 130 54 0 1 130 1 130 1.16e-49 166
Msa0678040 MtrunA17_Chr2g0311221 64.220 109 39 0 2 110 4 112 2.02e-49 166
Msa0678040 MtrunA17_Chr4g0058631 59.829 117 47 0 1 117 1 117 2.35e-49 167
Msa0678040 MtrunA17_Chr8g0349261 62.185 119 43 2 1 117 1 119 2.61e-49 165
Msa0678040 MtrunA17_Chr3g0103281 59.130 115 47 0 1 115 1 115 3.19e-49 165
Msa0678040 MtrunA17_Chr4g0068061 60.000 115 46 0 1 115 1 115 3.24e-49 166
Msa0678040 MtrunA17_Chr1g0211161 59.322 118 47 1 1 117 1 118 4.94e-49 162
Msa0678040 MtrunA17_Chr8g0385321 58.197 122 47 1 1 118 1 122 1.41e-48 163
Msa0678040 MtrunA17_Chr7g0217221 60.870 115 45 0 1 115 1 115 1.42e-48 162
Msa0678040 MtrunA17_Chr3g0117091 58.974 117 48 0 1 117 1 117 2.40e-48 164
Msa0678040 MtrunA17_Chr7g0270891 60.870 115 45 0 1 115 1 115 3.02e-48 164
Msa0678040 MtrunA17_Chr5g0435101 59.130 115 47 0 3 117 2 116 1.19e-47 158
Msa0678040 MtrunA17_Chr6g0452271 57.265 117 50 0 1 117 1 117 2.12e-47 161
Msa0678040 MtrunA17_Chr3g0121241 37.545 277 153 8 5 272 35 300 3.23e-47 159
Msa0678040 MtrunA17_Chr1g0151941 47.239 163 77 3 1 161 1 156 3.46e-47 158
Msa0678040 MtrunA17_Chr3g0135311 39.500 200 118 3 1 198 1 199 1.01e-46 159
Msa0678040 MtrunA17_Chr2g0330041 57.265 117 50 0 1 117 1 117 1.19e-46 160
Msa0678040 MtrunA17_Chr1g0194951 54.478 134 59 1 1 132 1 134 1.25e-46 160
Msa0678040 MtrunA17_Chr8g0342541 55.556 117 52 0 1 117 1 117 1.69e-46 159
Msa0678040 MtrunA17_Chr2g0309911 59.459 111 45 0 7 117 6 116 2.68e-46 157
Msa0678040 MtrunA17_Chr1g0152011 49.618 131 65 1 1 130 1 131 2.98e-46 158
Msa0678040 MtrunA17_Chr5g0400821 55.932 118 51 1 1 117 1 118 5.89e-46 156
Msa0678040 MtrunA17_Chr8g0342521 54.701 117 53 0 1 117 1 117 8.05e-46 157
Msa0678040 MtrunA17_Chr7g0254411 58.261 115 48 0 1 115 1 115 1.11e-45 156
Msa0678040 MtrunA17_Chr6g0453211 60.000 110 44 0 1 110 1 110 1.12e-45 156
Msa0678040 MtrunA17_Chr4g0044421 42.929 198 93 6 3 198 2 181 1.13e-45 152
Msa0678040 MtrunA17_Chr4g0060721 56.522 115 50 0 1 115 2 116 1.62e-45 156
Msa0678040 MtrunA17_Chr8g0342481 56.452 124 49 3 1 120 1 123 1.67e-45 157
Msa0678040 MtrunA17_Chr7g0264641 56.780 118 50 1 1 117 1 118 1.88e-45 154
Msa0678040 MtrunA17_Chr7g0271241 60.550 109 43 0 1 109 1 109 3.11e-45 156
Msa0678040 MtrunA17_Chr5g0417821 62.617 107 40 0 11 117 6 112 3.80e-45 154
Msa0678040 MtrunA17_Chr4g0028311 55.085 118 52 1 1 117 1 118 5.61e-45 154
Msa0678040 MtrunA17_Chr3g0092401 56.522 115 50 0 1 115 2 116 5.94e-45 154
Msa0678040 MtrunA17_Chr4g0055981 61.111 108 42 0 9 116 52 159 3.64e-44 149
Msa0678040 MtrunA17_Chr4g0054391 48.905 137 69 1 1 136 1 137 9.49e-44 150
Msa0678040 MtrunA17_Chr3g0088461 62.037 108 41 0 8 115 18 125 1.83e-43 151
Msa0678040 MtrunA17_Chr2g0328771 62.500 104 39 0 12 115 20 123 1.83e-43 150
Msa0678040 MtrunA17_Chr8g0387421 53.913 115 53 0 1 115 1 115 2.13e-43 150
Msa0678040 MtrunA17_Chr2g0327351 56.757 111 47 1 1 110 1 111 2.67e-43 150
Msa0678040 MtrunA17_Chr1g0180391 50.000 136 58 1 12 137 19 154 8.04e-43 146
Msa0678040 MtrunA17_Chr5g0397231 54.545 110 50 0 1 110 1 110 2.10e-42 148
Msa0678040 MtrunA17_Chr4g0072751 56.757 111 47 1 1 110 1 111 2.10e-42 148
Msa0678040 MtrunA17_Chr5g0434931 43.158 190 87 4 11 185 34 217 2.14e-42 146
Msa0678040 MtrunA17_Chr1g0209661 53.435 131 58 1 6 136 21 148 2.36e-42 147
Msa0678040 MtrunA17_Chr6g0487491 49.669 151 60 3 1 135 1 151 2.36e-42 145
Msa0678040 MtrunA17_Chr4g0032401 55.462 119 52 1 12 130 17 134 4.55e-42 147
Msa0678040 MtrunA17_Chr6g0470971 53.125 128 51 1 9 136 11 129 5.25e-42 145
Msa0678040 MtrunA17_Chr1g0168661 56.410 117 51 0 13 129 22 138 1.14e-41 144
Msa0678040 MtrunA17_Chr7g0269831 58.621 116 48 0 1 116 1 116 1.30e-41 146
Msa0678040 MtrunA17_Chr5g0434911 56.757 111 48 0 7 117 16 126 1.74e-41 144
Msa0678040 MtrunA17_Chr1g0203441 58.333 108 45 0 9 116 10 117 1.93e-41 144
Msa0678040 MtrunA17_Chr1g0194291 46.835 158 69 2 8 159 17 165 4.07e-41 142
Msa0678040 MtrunA17_Chr1g0154031 48.837 129 66 0 12 140 76 204 1.47e-40 145
Msa0678040 MtrunA17_Chr1g0186061 53.846 117 54 0 13 129 21 137 3.65e-40 140
Msa0678040 MtrunA17_Chr7g0228231 49.664 149 71 1 12 160 14 158 4.50e-40 138
Msa0678040 MtrunA17_Chr5g0434841 58.879 107 44 0 11 117 19 125 4.80e-40 141
Msa0678040 MtrunA17_Chr3g0080861 57.692 104 44 0 12 115 37 140 4.85e-40 145
Msa0678040 MtrunA17_Chr3g0099131 55.660 106 47 0 10 115 39 144 5.12e-40 145
Msa0678040 MtrunA17_Chr7g0240821 48.227 141 67 3 16 152 5 143 5.69e-40 139
Msa0678040 MtrunA17_Chr1g0194301 47.436 156 67 2 8 157 29 175 6.98e-40 140
Msa0678040 MtrunA17_Chr8g0354661 57.692 104 44 0 12 115 37 140 1.31e-39 144
Msa0678040 MtrunA17_Chr7g0228991 57.944 107 45 0 11 117 28 134 1.39e-39 139
Msa0678040 MtrunA17_Chr8g0360111 61.165 103 40 0 10 112 23 125 1.43e-39 139
Msa0678040 MtrunA17_Chr5g0434831 42.473 186 95 4 11 187 6 188 1.93e-39 136
Msa0678040 MtrunA17_Chr2g0327821 40.805 174 90 3 12 184 6 167 6.41e-39 136
Msa0678040 MtrunA17_Chr8g0343831 53.913 115 49 1 1 115 1 111 7.36e-39 136
Msa0678040 MtrunA17_Chr7g0220341 47.727 132 63 2 11 140 24 151 1.52e-38 136
Msa0678040 MtrunA17_Chr6g0450101 59.223 103 42 0 12 114 14 116 1.98e-38 134
Msa0678040 MtrunA17_Chr2g0322521 56.075 107 47 0 9 115 26 132 1.77e-36 134
Msa0678040 MtrunA17_Chr4g0042611 59.091 88 36 0 1 88 1 88 2.28e-36 125
Msa0678040 MtrunA17_Chr4g0030881 53.636 110 44 1 13 115 8 117 3.93e-35 127
Msa0678040 MtrunA17_Chr2g0293911 54.054 111 51 0 6 116 18 128 2.39e-34 126
Msa0678040 MtrunA17_Chr1g0192411 47.826 115 60 0 1 115 1 115 9.12e-34 127
Msa0678040 MtrunA17_Chr2g0294811 55.435 92 41 0 1 92 1 92 1.18e-33 119
Msa0678040 MtrunA17_Chr5g0395221 57.955 88 37 0 1 88 1 88 1.41e-33 117
Msa0678040 MtrunA17_Chr4g0068921 44.521 146 72 1 8 153 20 156 3.87e-33 120
Msa0678040 MtrunA17_Chr7g0247131 71.831 71 20 0 45 115 11 81 4.10e-33 122
Msa0678040 MtrunA17_Chr8g0342531 55.056 89 40 0 1 89 1 89 4.06e-32 116
Msa0678040 MtrunA17_Chr5g0440781 46.789 109 55 2 13 120 13 119 4.29e-32 117
Msa0678040 MtrunA17_Chr5g0440761 46.789 109 55 2 13 120 13 119 4.50e-32 119
Msa0678040 MtrunA17_Chr5g0441141 42.424 132 68 3 13 136 13 144 5.11e-32 119
Msa0678040 MtrunA17_Chr3g0133601 53.398 103 47 1 14 116 37 138 5.21e-32 118
Msa0678040 MtrunA17_Chr5g0441131 36.196 163 93 3 1 155 1 160 1.22e-31 115
Msa0678040 MtrunA17_Chr8g0342511 54.023 87 40 0 1 87 1 87 2.43e-31 112
Msa0678040 MtrunA17_Chr3g0099141 51.724 87 42 0 8 94 36 122 1.12e-30 112
Msa0678040 MtrunA17_Chr6g0454921 49.550 111 54 2 14 124 15 123 1.37e-30 114
Msa0678040 MtrunA17_Chr8g0342461 53.261 92 38 2 1 89 1 90 2.35e-30 111
Msa0678040 MtrunA17_Chr8g0334881 48.182 110 56 1 8 116 6 115 2.49e-30 115
Msa0678040 MtrunA17_Chr4g0008551 37.821 156 71 4 14 144 38 192 5.91e-30 115
Msa0678040 MtrunA17_Chr5g0401731 38.926 149 83 2 14 162 15 155 8.66e-30 114
Msa0678040 MtrunA17_Chr8g0342471 52.174 92 39 2 1 89 1 90 1.16e-29 109
Msa0678040 MtrunA17_Chr5g0429661 47.059 102 53 1 14 115 122 222 1.40e-29 114
Msa0678040 MtrunA17_Chr4g0053431 48.039 102 52 1 14 115 5 105 1.64e-29 112
Msa0678040 MtrunA17_Chr5g0434901 67.606 71 23 0 43 113 4 74 2.02e-29 107
Msa0678040 MtrunA17_Chr4g0013361 41.176 136 76 3 8 142 6 138 2.10e-28 110
Msa0678040 MtrunA17_Chr6g0480581 49.505 101 50 1 14 114 4 103 1.93e-27 106
Msa0678040 MtrunA17_Chr7g0229101 61.972 71 27 0 43 113 3 73 2.21e-26 102
Msa0678040 MtrunA17_Chr4g0058991 44.444 108 57 2 9 115 204 309 3.00e-26 107
Msa0678040 MtrunA17_Chr7g0229131 50.538 93 45 1 43 134 3 95 3.57e-26 101
Msa0678040 MtrunA17_Chr7g0238631 48.039 102 52 1 14 115 113 213 4.20e-26 107
Msa0678040 MtrunA17_Chr7g0228531 47.059 102 52 2 14 115 220 319 4.29e-26 106
Msa0678040 MtrunA17_Chr5g0417621 47.059 102 53 1 14 115 134 234 1.24e-25 105
Msa0678040 MtrunA17_Chr3g0117511 41.176 102 59 1 14 115 183 283 2.15e-25 104
Msa0678040 MtrunA17_Chr4g0042501 47.573 103 51 2 14 115 105 205 4.79e-25 103
Msa0678040 MtrunA17_Chr3g0139671 44.118 102 56 1 14 115 85 185 8.46e-25 103
Msa0678040 MtrunA17_Chr3g0139671 36.000 100 62 2 14 112 33 131 8.59e-14 71.2
Msa0678040 MtrunA17_Chr1g0157731 45.098 102 55 1 14 115 91 191 1.28e-24 103
Msa0678040 MtrunA17_Chr1g0157731 35.000 100 63 2 14 112 39 137 7.03e-14 71.6
Msa0678040 MtrunA17_Chr6g0453751 46.809 94 41 2 11 95 19 112 2.89e-24 95.1
Msa0678040 MtrunA17_Chr5g0425591 46.875 96 47 2 1 95 1 93 3.60e-24 93.6
Msa0678040 MtrunA17_Chr6g0460661 36.054 147 87 4 14 154 16 161 5.32e-24 95.1
Msa0678040 MtrunA17_Chr5g0437321 45.455 99 53 1 14 112 19 116 5.36e-24 98.2
Msa0678040 MtrunA17_Chr3g0125801 46.789 109 55 2 8 115 10 116 1.50e-23 97.1
Msa0678040 MtrunA17_Chr7g0254261 47.059 102 53 1 14 115 89 189 2.47e-23 97.8
Msa0678040 MtrunA17_Chr6g0460671 33.951 162 91 4 14 175 99 244 6.35e-23 96.7
Msa0678040 MtrunA17_Chr7g0228481 38.129 139 76 4 14 146 220 354 9.49e-23 97.1
Msa0678040 MtrunA17_Chr3g0093811 54.795 73 33 0 43 115 13 85 4.26e-22 92.8
Msa0678040 MtrunA17_Chr7g0228401 30.769 221 115 8 25 228 290 489 4.31e-22 95.5
Msa0678040 MtrunA17_Chr7g0233061 35.606 132 71 6 14 143 180 299 3.78e-21 91.7
Msa0678040 MtrunA17_Chr5g0397841 45.833 96 51 1 14 109 110 204 4.33e-21 92.4
Msa0678040 MtrunA17_Chr1g0177901 36.290 124 66 4 37 153 17 134 6.62e-20 85.5
Msa0678040 MtrunA17_Chr7g0238651 43.617 94 51 1 17 108 10 103 5.07e-19 85.5
Msa0678040 MtrunA17_Chr2g0323331 28.261 230 85 6 88 253 5 218 8.47e-19 85.1
Msa0678040 MtrunA17_Chr8g0362231 41.284 109 61 2 16 123 24 130 6.70e-17 80.1
Msa0678040 MtrunA17_Chr5g0416341 41.176 102 57 2 16 116 28 127 1.03e-15 76.6
Msa0678040 MtrunA17_Chr1g0193901 44.828 87 46 2 12 96 11 97 1.28e-15 71.2
Msa0678040 MtrunA17_Chr1g0193891 44.828 87 46 2 12 96 11 97 1.28e-15 71.2
Msa0678040 MtrunA17_Chr1g0193871 44.828 87 46 2 12 96 11 97 1.28e-15 71.2
Msa0678040 MtrunA17_Chr1g0193881 44.828 87 46 2 12 96 11 97 1.28e-15 71.2
Msa0678040 MtrunA17_Chr5g0434871 63.636 44 16 0 74 117 2 45 6.20e-15 68.2
Msa0678040 MtrunA17_Chr2g0322831 58.974 39 16 0 70 108 34 72 2.66e-11 58.5
Msa0678040 MtrunA17_Chr7g0247141 53.191 47 21 1 1 46 1 47 2.79e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678040 AT2G31180.1 48.241 199 89 1 1 199 1 185 1.59e-59 190
Msa0678040 AT3G23250.1 45.536 224 101 6 1 203 1 224 8.48e-59 189
Msa0678040 AT1G06180.1 47.739 199 90 3 1 199 1 185 4.88e-57 183
Msa0678040 AT4G28110.1 64.957 117 41 0 1 117 1 117 1.18e-55 181
Msa0678040 AT4G38620.1 51.299 154 73 1 1 154 1 152 2.66e-54 177
Msa0678040 AT3G02940.2 62.393 117 44 0 1 117 1 117 1.46e-53 176
Msa0678040 AT4G21440.1 62.393 117 44 0 1 117 1 117 1.98e-53 177
Msa0678040 AT5G16770.4 61.538 117 45 0 1 117 1 117 3.03e-53 176
Msa0678040 AT5G16770.3 61.538 117 45 0 1 117 1 117 3.03e-53 176
Msa0678040 AT3G02940.1 62.393 117 44 0 1 117 1 117 3.28e-53 176
Msa0678040 AT3G02940.3 62.393 117 44 0 1 117 1 117 3.28e-53 176
Msa0678040 AT3G61250.1 64.103 117 42 0 1 117 1 117 4.07e-53 175
Msa0678040 AT3G01140.2 64.957 117 41 0 1 117 1 117 4.56e-53 176
Msa0678040 AT5G16770.1 61.538 117 45 0 1 117 1 117 6.13e-53 176
Msa0678040 AT5G16770.2 61.538 117 45 0 1 117 1 117 6.13e-53 176
Msa0678040 AT1G79180.1 59.055 127 52 0 2 128 4 130 1.28e-52 174
Msa0678040 AT5G15310.1 63.248 117 43 0 1 117 1 117 4.89e-52 173
Msa0678040 AT5G15310.2 63.248 117 43 0 1 117 1 117 5.12e-52 172
Msa0678040 AT5G15310.4 63.248 117 43 0 1 117 1 117 6.52e-52 170
Msa0678040 AT1G22640.1 41.262 206 102 4 1 198 1 195 1.45e-51 170
Msa0678040 AT5G10280.1 61.538 117 45 0 1 117 1 117 2.93e-51 171
Msa0678040 AT3G13540.1 42.654 211 99 4 4 198 15 219 4.03e-51 168
Msa0678040 AT1G16490.1 60.526 114 45 0 2 115 4 117 4.37e-51 169
Msa0678040 AT1G35515.1 57.025 121 52 0 1 121 1 121 5.13e-51 167
Msa0678040 AT3G01140.1 64.103 117 42 0 1 117 44 160 5.70e-51 172
Msa0678040 AT4G05100.1 61.864 118 44 1 1 117 1 118 8.02e-51 170
Msa0678040 AT2G16720.1 59.829 117 47 0 1 117 1 117 1.01e-50 168
Msa0678040 AT1G74430.1 64.348 115 41 0 1 115 1 115 1.58e-50 167
Msa0678040 AT5G16600.1 45.263 190 94 3 1 186 1 184 2.04e-50 169
Msa0678040 AT5G65230.1 60.684 117 46 0 1 117 1 117 2.06e-50 168
Msa0678040 AT1G34670.1 59.829 117 47 0 1 117 1 117 3.93e-50 169
Msa0678040 AT1G66230.1 61.739 115 44 0 1 115 1 115 5.09e-50 166
Msa0678040 AT4G12350.1 41.414 198 114 1 1 198 1 196 6.67e-50 166
Msa0678040 AT4G22680.1 59.829 117 47 0 1 117 1 117 7.50e-50 166
Msa0678040 AT1G74080.1 63.158 114 42 0 1 114 1 114 1.44e-49 167
Msa0678040 AT5G07690.1 57.025 121 52 0 1 121 1 121 4.29e-49 166
Msa0678040 AT4G09460.1 55.372 121 54 0 1 121 1 121 4.83e-49 162
Msa0678040 AT5G60890.1 60.000 115 46 0 1 115 1 115 4.98e-49 164
Msa0678040 AT4G17785.2 58.475 118 48 1 1 117 1 118 5.13e-49 166
Msa0678040 AT4G01680.3 54.054 148 56 2 1 136 1 148 5.46e-49 162
Msa0678040 AT1G56160.1 59.649 114 46 0 2 115 4 117 5.57e-49 164
Msa0678040 AT4G17785.1 58.475 118 48 1 1 117 1 118 6.13e-49 166
Msa0678040 AT4G34990.1 50.625 160 67 2 1 160 1 148 6.40e-49 163
Msa0678040 AT5G07700.1 57.025 121 52 0 1 121 1 121 9.62e-49 165
Msa0678040 AT5G07700.2 57.025 121 52 0 1 121 1 121 9.62e-49 165
Msa0678040 AT3G28470.1 47.826 161 80 1 1 157 1 161 1.37e-48 164
Msa0678040 AT5G56110.1 59.130 115 47 0 1 115 1 115 1.66e-48 164
Msa0678040 AT4G01680.1 54.054 148 56 2 1 136 1 148 1.79e-48 164
Msa0678040 AT1G18710.1 61.739 115 44 0 1 115 1 115 3.11e-48 161
Msa0678040 AT5G26660.1 60.870 115 45 0 1 115 1 115 5.50e-48 163
Msa0678040 AT1G18570.1 61.017 118 45 1 1 117 1 118 7.26e-48 163
Msa0678040 AT5G61420.2 55.372 121 54 0 1 121 1 121 7.32e-48 163
Msa0678040 AT3G62610.1 60.000 115 46 0 1 115 1 115 9.66e-48 162
Msa0678040 AT1G08810.1 49.020 153 76 2 1 152 1 152 1.17e-47 160
Msa0678040 AT5G62320.1 56.911 123 46 2 2 117 3 125 1.59e-47 159
Msa0678040 AT5G14340.1 57.391 115 49 0 1 115 13 127 2.17e-47 159
Msa0678040 AT3G12820.1 58.261 115 48 0 3 117 5 119 2.25e-47 158
Msa0678040 AT3G47600.1 58.261 115 48 0 1 115 1 115 4.26e-47 160
Msa0678040 AT1G09540.1 44.624 186 97 1 1 186 1 180 4.69e-47 161
Msa0678040 AT5G57620.1 44.253 174 86 3 1 163 1 174 8.16e-47 160
Msa0678040 AT1G57560.2 56.410 117 51 0 1 117 1 117 1.16e-46 157
Msa0678040 AT1G57560.1 56.410 117 51 0 1 117 1 117 1.28e-46 159
Msa0678040 AT1G79180.2 46.875 160 52 1 2 128 4 163 1.40e-46 159
Msa0678040 AT2G47460.1 58.261 115 48 0 1 115 1 115 1.78e-46 160
Msa0678040 AT3G49690.1 57.143 119 50 1 1 118 1 119 2.17e-46 158
Msa0678040 AT3G28910.1 58.261 115 48 0 1 115 1 115 4.64e-46 157
Msa0678040 AT1G74650.1 57.265 117 50 0 1 117 1 117 5.56e-46 157
Msa0678040 AT5G54230.1 58.974 117 48 0 1 117 1 117 5.67e-46 157
Msa0678040 AT5G49330.1 58.261 115 48 0 1 115 1 115 7.56e-46 157
Msa0678040 AT5G62470.2 57.391 115 49 0 1 115 1 115 8.32e-46 157
Msa0678040 AT3G13890.2 56.410 117 51 0 1 117 1 117 1.05e-45 157
Msa0678040 AT5G14750.1 64.078 103 37 0 13 115 17 119 1.57e-45 152
Msa0678040 AT4G01680.2 50.000 160 56 3 1 136 1 160 1.85e-45 156
Msa0678040 AT5G65790.1 55.462 119 52 1 1 118 1 119 9.16e-45 155
Msa0678040 AT5G62470.1 57.391 115 48 1 1 115 1 114 2.96e-44 153
Msa0678040 AT3G12720.1 46.099 141 59 1 7 147 17 140 3.13e-44 152
Msa0678040 AT4G37780.1 53.390 118 54 1 1 117 1 118 3.31e-44 152
Msa0678040 AT5G40330.1 63.107 103 38 0 13 115 13 115 3.56e-44 149
Msa0678040 AT3G27920.1 55.085 118 53 0 13 130 15 132 5.17e-44 149
Msa0678040 AT5G23000.1 54.237 118 53 1 1 117 1 118 7.48e-44 152
Msa0678040 AT2G36890.1 55.085 118 52 1 1 117 1 118 5.68e-43 149
Msa0678040 AT5G35550.1 59.821 112 45 0 4 115 6 117 6.66e-43 147
Msa0678040 AT2G36890.2 55.085 118 52 1 1 117 42 159 1.03e-42 149
Msa0678040 AT1G63910.1 53.043 115 54 0 1 115 1 115 1.12e-42 150
Msa0678040 AT3G13890.1 52.381 126 51 1 1 117 1 126 1.23e-42 149
Msa0678040 AT5G12870.1 62.500 104 39 0 12 115 18 121 1.66e-42 147
Msa0678040 AT4G13480.1 58.120 117 49 0 13 129 7 123 2.61e-41 143
Msa0678040 AT3G11440.2 56.075 107 47 0 9 115 38 144 3.67e-41 148
Msa0678040 AT3G24310.1 56.303 119 52 0 11 129 17 135 4.15e-41 143
Msa0678040 AT5G06100.1 55.556 108 48 0 8 115 28 135 4.31e-41 147
Msa0678040 AT5G06100.5 55.556 108 48 0 8 115 28 135 1.19e-40 147
Msa0678040 AT5G06100.2 55.556 108 48 0 8 115 28 135 1.19e-40 147
Msa0678040 AT5G06100.3 55.556 108 48 0 8 115 28 135 1.19e-40 147
Msa0678040 AT5G06100.4 55.556 108 48 0 8 115 28 135 1.19e-40 147
Msa0678040 AT4G26930.1 58.252 103 43 0 12 114 19 121 1.23e-40 145
Msa0678040 AT3G11440.3 56.075 107 47 0 9 115 38 144 1.33e-40 147
Msa0678040 AT3G11440.4 56.075 107 47 0 9 115 38 144 1.33e-40 147
Msa0678040 AT3G11440.1 56.075 107 47 0 9 115 38 144 1.33e-40 147
Msa0678040 AT3G08500.1 58.333 108 45 0 8 115 26 133 1.55e-40 144
Msa0678040 AT5G52600.1 61.111 108 42 0 9 116 9 116 2.05e-40 139
Msa0678040 AT5G55020.1 60.194 103 41 0 12 114 26 128 2.77e-40 146
Msa0678040 AT2G32460.1 54.464 112 51 0 4 115 10 121 2.98e-40 146
Msa0678040 AT2G32460.2 57.143 105 45 0 11 115 5 109 4.64e-40 145
Msa0678040 AT3G30210.1 44.444 171 82 3 11 180 26 184 6.66e-40 140
Msa0678040 AT3G01530.1 58.252 103 43 0 12 114 25 127 8.45e-39 135
Msa0678040 AT3G27810.1 58.252 103 43 0 12 114 20 122 1.30e-38 135
Msa0678040 AT5G40350.1 57.547 106 45 0 12 117 17 122 1.74e-38 134
Msa0678040 AT1G66370.1 58.095 105 44 0 11 115 7 111 2.25e-38 135
Msa0678040 AT3G48920.1 55.660 106 47 0 9 114 15 120 3.55e-38 135
Msa0678040 AT1G48000.1 55.238 105 47 0 12 116 32 136 3.62e-38 135
Msa0678040 AT2G26960.1 56.604 106 46 0 9 114 17 122 6.33e-38 138
Msa0678040 AT1G68320.1 57.143 105 45 0 12 116 19 123 8.71e-38 135
Msa0678040 AT5G52260.1 53.913 115 53 0 1 115 1 115 2.31e-37 133
Msa0678040 AT1G25340.1 58.654 104 43 0 13 116 19 122 2.66e-37 134
Msa0678040 AT3G46130.1 55.660 106 47 0 11 116 8 113 7.74e-37 132
Msa0678040 AT2G47190.1 53.211 109 51 0 8 116 16 124 9.03e-37 132
Msa0678040 AT4G25560.1 53.043 115 52 1 1 115 1 113 1.71e-36 131
Msa0678040 AT5G59780.3 55.769 104 46 0 13 116 9 112 2.22e-36 130
Msa0678040 AT1G66380.1 60.000 105 42 0 11 115 7 111 1.26e-34 122
Msa0678040 AT3G06490.1 55.046 109 49 0 8 116 15 123 1.48e-34 127
Msa0678040 AT5G49620.1 43.210 162 81 2 12 173 26 176 1.79e-34 127
Msa0678040 AT5G14750.3 64.130 92 24 2 24 115 3 85 3.97e-34 122
Msa0678040 AT1G56650.1 42.442 172 95 2 11 180 7 176 6.22e-34 124
Msa0678040 AT5G35550.2 71.053 76 22 0 40 115 45 120 9.86e-34 124
Msa0678040 AT1G66390.1 59.048 105 43 0 11 115 7 111 1.13e-33 123
Msa0678040 AT1G25340.2 55.769 104 41 1 13 116 19 117 6.58e-33 122
Msa0678040 AT1G25340.3 55.769 104 41 1 13 116 19 117 1.16e-32 122
Msa0678040 AT5G26660.2 69.444 72 22 0 44 115 13 84 3.13e-32 121
Msa0678040 AT3G53200.1 50.000 104 52 0 12 115 9 112 3.19e-32 119
Msa0678040 AT5G49620.2 39.773 176 81 3 12 173 26 190 7.35e-31 117
Msa0678040 AT3G12820.2 67.143 70 23 0 48 117 2 71 1.91e-30 113
Msa0678040 AT2G26950.1 41.985 131 71 2 9 136 13 141 4.01e-30 117
Msa0678040 AT3G27810.2 62.500 72 27 0 43 114 2 73 7.81e-30 111
Msa0678040 AT3G60460.1 47.826 115 59 1 3 116 2 116 1.78e-29 113
Msa0678040 AT4G18770.1 45.794 107 57 1 9 115 212 317 2.59e-29 115
Msa0678040 AT5G59780.2 63.014 73 27 0 44 116 19 91 2.64e-29 110
Msa0678040 AT3G46130.4 63.014 73 27 0 44 116 19 91 3.44e-29 111
Msa0678040 AT3G47600.2 55.435 92 37 1 24 115 22 109 3.50e-29 113
Msa0678040 AT3G27785.1 41.176 136 72 3 9 143 184 312 4.89e-29 114
Msa0678040 AT5G40350.2 62.162 74 28 0 44 117 4 77 5.84e-29 108
Msa0678040 AT3G46130.3 63.889 72 26 0 45 116 10 81 7.30e-29 110
Msa0678040 AT3G23250.2 41.916 167 76 6 58 203 1 167 8.87e-29 110
Msa0678040 AT3G09230.1 49.524 105 52 1 14 118 55 158 2.62e-28 112
Msa0678040 AT5G67300.1 49.020 102 51 1 14 115 6 106 4.35e-28 110
Msa0678040 AT5G11510.3 47.059 102 53 1 14 115 81 181 1.49e-27 112
Msa0678040 AT5G11510.3 36.000 100 62 2 14 112 29 127 1.32e-14 74.3
Msa0678040 AT5G11510.1 47.059 102 53 1 14 115 81 181 1.49e-27 112
Msa0678040 AT5G11510.1 36.000 100 62 2 14 112 29 127 1.32e-14 74.3
Msa0678040 AT5G11510.4 47.059 102 53 1 14 115 81 181 1.49e-27 112
Msa0678040 AT5G11510.4 36.000 100 62 2 14 112 29 127 1.32e-14 74.3
Msa0678040 AT5G11510.2 47.059 102 53 1 14 115 81 181 2.22e-27 111
Msa0678040 AT5G11510.2 34.513 113 72 2 14 125 29 140 1.59e-14 73.9
Msa0678040 AT5G11510.5 47.059 102 53 1 14 115 81 181 2.43e-27 111
Msa0678040 AT5G11510.5 34.513 113 72 2 14 125 29 140 1.66e-14 73.9
Msa0678040 AT4G33450.1 44.068 118 60 2 3 120 13 124 2.47e-27 106
Msa0678040 AT1G17950.1 48.544 103 52 1 14 116 5 106 3.17e-27 106
Msa0678040 AT3G50060.1 41.880 117 67 1 14 130 6 121 4.23e-27 107
Msa0678040 AT4G37260.1 47.573 103 53 1 14 116 13 114 6.08e-27 107
Msa0678040 AT1G69560.1 45.794 107 57 1 9 115 102 207 7.09e-27 107
Msa0678040 AT5G02320.1 37.566 189 101 6 14 197 127 303 8.40e-27 109
Msa0678040 AT5G02320.2 37.566 189 101 6 14 197 127 303 8.40e-27 109
Msa0678040 AT1G69560.2 45.794 107 57 1 9 115 118 223 8.74e-27 107
Msa0678040 AT5G02320.3 37.566 189 101 6 14 197 67 243 9.00e-27 108
Msa0678040 AT5G58850.1 45.631 103 53 2 14 115 105 205 9.27e-27 108
Msa0678040 AT5G40360.1 42.105 114 65 1 1 114 145 257 3.65e-26 105
Msa0678040 AT3G53200.2 58.333 72 30 0 44 115 8 79 5.26e-26 102
Msa0678040 AT2G23290.1 46.602 103 54 1 14 116 13 114 5.53e-26 104
Msa0678040 AT3G55730.1 36.709 158 84 3 14 156 56 212 6.71e-26 105
Msa0678040 AT5G11050.1 44.660 103 54 2 14 115 105 205 1.11e-25 105
Msa0678040 AT1G26780.1 47.059 102 53 1 14 115 98 198 1.26e-25 102
Msa0678040 AT1G26780.2 47.059 102 53 1 14 115 98 198 1.31e-25 104
Msa0678040 AT3G09370.2 45.631 103 55 1 14 116 135 236 1.32e-25 105
Msa0678040 AT3G09370.1 45.631 103 55 1 14 116 130 231 1.32e-25 105
Msa0678040 AT3G09370.3 45.631 103 55 1 14 116 143 244 1.80e-25 105
Msa0678040 AT1G66380.3 67.123 73 24 0 43 115 6 78 3.69e-25 97.1
Msa0678040 AT1G73410.1 51.456 103 47 2 14 115 6 106 5.66e-25 100
Msa0678040 AT5G14750.4 70.690 58 17 0 58 115 1 58 1.54e-24 96.3
Msa0678040 AT5G14750.2 70.690 58 17 0 58 115 1 58 1.54e-24 96.3
Msa0678040 AT5G17800.1 45.098 102 55 1 14 115 93 193 1.57e-24 100
Msa0678040 AT2G39880.1 44.762 105 57 1 14 118 50 153 1.58e-24 101
Msa0678040 AT1G73410.2 51.456 103 47 2 14 115 6 106 1.74e-24 97.8
Msa0678040 AT4G32730.5 44.118 102 56 1 14 115 87 187 4.07e-24 102
Msa0678040 AT4G32730.5 34.513 113 72 2 14 125 35 146 7.78e-14 72.0
Msa0678040 AT4G32730.4 44.118 102 56 1 14 115 87 187 4.07e-24 102
Msa0678040 AT4G32730.4 34.513 113 72 2 14 125 35 146 7.78e-14 72.0
Msa0678040 AT4G32730.3 44.118 102 56 1 14 115 87 187 4.07e-24 102
Msa0678040 AT4G32730.3 34.513 113 72 2 14 125 35 146 7.78e-14 72.0
Msa0678040 AT4G32730.2 44.118 102 56 1 14 115 87 187 4.07e-24 102
Msa0678040 AT4G32730.2 34.513 113 72 2 14 125 35 146 7.78e-14 72.0
Msa0678040 AT4G32730.1 44.118 102 56 1 14 115 87 187 5.11e-24 102
Msa0678040 AT4G32730.1 34.513 113 72 2 14 125 35 146 8.44e-14 71.6
Msa0678040 AT3G29020.1 42.157 102 58 1 14 115 65 165 1.53e-23 96.3
Msa0678040 AT3G29020.2 42.157 102 58 1 14 115 67 167 1.53e-23 97.8
Msa0678040 AT1G22640.3 36.364 154 70 5 58 203 1 134 3.38e-23 94.4
Msa0678040 AT1G18960.1 42.276 123 56 5 6 121 4 118 1.05e-22 95.5
Msa0678040 AT2G25230.1 43.750 112 58 3 9 119 21 128 1.16e-22 94.0
Msa0678040 AT1G71030.2 56.716 67 29 0 51 117 5 71 4.88e-22 90.9
Msa0678040 AT5G39700.1 42.400 125 55 3 9 120 51 171 6.02e-22 90.9
Msa0678040 AT1G71030.1 56.716 67 29 0 51 117 19 85 6.61e-22 90.9
Msa0678040 AT1G66380.2 56.098 82 36 0 11 92 7 88 6.73e-22 88.6
Msa0678040 AT2G37630.1 38.889 126 69 2 17 134 7 132 2.23e-20 90.1
Msa0678040 AT5G40430.1 41.071 112 60 4 9 119 49 155 3.56e-19 85.1
Msa0678040 AT4G00540.2 41.121 107 59 2 12 115 101 206 8.58e-19 85.9
Msa0678040 AT4G00540.2 34.167 120 71 2 14 125 46 165 1.90e-13 70.1
Msa0678040 AT4G00540.1 41.121 107 59 2 12 115 99 204 1.20e-18 85.5
Msa0678040 AT4G00540.1 34.167 120 71 2 14 125 44 163 2.09e-13 70.1
Msa0678040 AT3G18100.1 40.625 96 56 1 13 108 545 639 5.69e-17 81.3
Msa0678040 AT3G18100.3 40.625 96 56 1 13 108 497 591 8.59e-17 80.9
Msa0678040 AT3G18100.4 40.625 96 56 1 13 108 384 478 1.21e-16 80.1
Msa0678040 AT1G14350.2 39.091 110 64 2 16 124 27 134 1.54e-16 79.3
Msa0678040 AT1G14350.1 39.091 110 64 2 16 124 27 134 1.54e-16 79.3
Msa0678040 AT3G18100.2 40.625 96 56 1 13 108 332 426 1.74e-16 79.7
Msa0678040 AT2G02820.1 38.182 110 65 2 16 124 32 139 1.05e-15 77.0
Msa0678040 AT2G02820.2 38.182 110 65 2 16 124 32 139 1.19e-15 77.0
Msa0678040 AT2G02820.3 39.091 110 64 2 16 124 32 139 1.43e-15 75.9
Msa0678040 AT5G59780.1 59.574 47 19 0 70 116 1 47 4.85e-14 68.9
Msa0678040 AT3G46130.2 59.574 47 19 0 70 116 1 47 7.44e-14 68.9
Msa0678040 AT4G25560.2 60.000 45 18 0 71 115 3 47 1.62e-12 65.9

Find 57 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACTTCTTTGGATGATTT+TGG 0.164698 4_4:-32828132 Msa0678040:CDS
TTGAGGAGTAATTTGGTAAT+TGG 0.211329 4_4:+32828242 None:intergenic
ATTTCACTAGATAATGAAAA+TGG 0.248441 4_4:+32828180 None:intergenic
AGATCACAATTCCACTTCTT+TGG 0.250501 4_4:-32828142 Msa0678040:CDS
AGTATATGACAAGATATATT+TGG 0.257006 4_4:-32827857 Msa0678040:CDS
GGCCATTGGTGTCTGAGATT+TGG 0.260126 4_4:+32828211 None:intergenic
GATAATGAAAATGGGGATAA+AGG 0.267881 4_4:+32828189 None:intergenic
TGACAAAACTTTCGGTAGTA+TGG 0.284671 4_4:+32828025 None:intergenic
ATTGCTTATGTCACTAGATA+TGG 0.291146 4_4:-32828703 Msa0678040:CDS
AACTGGATTGAGGAGTAATT+TGG 0.303507 4_4:+32828235 None:intergenic
AACCATTGCGGCTGAGTTAC+CGG 0.309509 4_4:-32828394 Msa0678040:CDS
GCCATTGGTGTCTGAGATTT+GGG 0.312832 4_4:+32828212 None:intergenic
TTTGTCATGGATAATGATTT+TGG 0.329855 4_4:-32828009 Msa0678040:CDS
CTATATTTACCTACAAACTT+AGG 0.342857 4_4:+32828658 None:intergenic
CTAGATATGGTTGCTGGAAT+TGG 0.347558 4_4:-32828690 Msa0678040:CDS
CGACAACTCCCTAAGTTTGT+AGG 0.376990 4_4:-32828667 Msa0678040:intron
ACTTCATTATCTGTTCTTCC+CGG 0.394324 4_4:+32828375 None:intergenic
ATAATGAAAATGGGGATAAA+GGG 0.397818 4_4:+32828190 None:intergenic
ATTATCCATGACAAAACTTT+CGG 0.398726 4_4:+32828017 None:intergenic
CATGGACTGCTGAAGAAGAT+AGG 0.410291 4_4:-32828732 Msa0678040:CDS
TTAGGTGGCTGAATTATCTA+AGG 0.420573 4_4:-32828500 Msa0678040:CDS
TATATTTACCTACAAACTTA+GGG 0.437105 4_4:+32828659 None:intergenic
TTTCACTAGATAATGAAAAT+GGG 0.437986 4_4:+32828181 None:intergenic
GGTGTCTGAGATTTGGGAAC+TGG 0.438068 4_4:+32828218 None:intergenic
CACTGTTCCACTTGATGTGT+TGG 0.453293 4_4:+32828053 None:intergenic
ATGTCACTAGATATGGTTGC+TGG 0.454705 4_4:-32828696 Msa0678040:CDS
AGGGACATGTCAACCTCATA+TGG 0.482829 4_4:+32827934 None:intergenic
GAGATTTGGGAACTGGATTG+AGG 0.491808 4_4:+32828225 None:intergenic
ACCAAAATCATCCAAAGAAG+TGG 0.496803 4_4:+32828131 None:intergenic
ACTCCTTCTTGTGACAAAAG+TGG 0.498555 4_4:-32828769 Msa0678040:CDS
CTAAGGCCTAATATCAAAAG+AGG 0.501825 4_4:-32828483 Msa0678040:CDS
AGATTCATTTATAGAAGATG+TGG 0.523349 4_4:-32828103 Msa0678040:CDS
TTTCAGGTCTTTCAAGGTGT+GGG 0.533782 4_4:-32828536 Msa0678040:intron
ATTTCAGGTCTTTCAAGGTG+TGG 0.533848 4_4:-32828537 Msa0678040:intron
TCTTGAGAGAAGTGTGCCAA+TGG 0.538235 4_4:+32828346 None:intergenic
AATCTTTCCAACACATCAAG+TGG 0.540288 4_4:-32828060 Msa0678040:CDS
TCCCGGTAACTCAGCCGCAA+TGG 0.540711 4_4:+32828392 None:intergenic
ACCATTGCGGCTGAGTTACC+GGG 0.548881 4_4:-32828393 Msa0678040:CDS
ATAATGAAGTGAAGAACCAT+TGG 0.556377 4_4:-32828362 Msa0678040:CDS
GGATATATCTCTCCCTTGTG+TGG 0.558281 4_4:+32828263 None:intergenic
GTGGGAAGAGTTGTAGACTT+AGG 0.560267 4_4:-32828518 Msa0678040:CDS
AAAGGTATCAGTAGTTCAGT+TGG 0.561036 4_4:+32827907 None:intergenic
AAACTTTACTCAACAAGAAG+AGG 0.563987 4_4:-32828460 Msa0678040:CDS
AAATGGGGATAAAGGGCCAT+TGG 0.578413 4_4:+32828197 None:intergenic
GTGGAATGAGGAAAGGAACA+TGG 0.591827 4_4:-32828750 Msa0678040:CDS
GACAAAAGTGGAATGAGGAA+AGG 0.594720 4_4:-32828757 Msa0678040:CDS
CTTGTGACAAAAGTGGAATG+AGG 0.600030 4_4:-32828762 Msa0678040:CDS
TTCACTAGATAATGAAAATG+GGG 0.600303 4_4:+32828182 None:intergenic
ACTACTGATACCTTTGTCGA+TGG 0.606426 4_4:-32827899 Msa0678040:CDS
GGAATTGTGATCTAAAGATG+TGG 0.642475 4_4:+32828152 None:intergenic
TCAGTAGTTCAGTTGGAACG+AGG 0.643508 4_4:+32827914 None:intergenic
GAATAGATGGTCAACCATTG+CGG 0.644939 4_4:-32828406 Msa0678040:CDS
GACATAATTGAATCCACACA+AGG 0.645918 4_4:-32828276 Msa0678040:CDS
TCCCAAATCTCAGACACCAA+TGG 0.651151 4_4:-32828213 Msa0678040:CDS
CAGTAGTTCAGTTGGAACGA+GGG 0.652480 4_4:+32827915 None:intergenic
GGAAGAGTTGTAGACTTAGG+TGG 0.671039 4_4:-32828515 Msa0678040:CDS
ACATAATTGAATCCACACAA+GGG 0.713140 4_4:-32828275 Msa0678040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTACCTACAAACTTA+GGG + chr4_4:32827968-32827987 None:intergenic 20.0%
!! TTTCACTAGATAATGAAAAT+GGG + chr4_4:32828446-32828465 None:intergenic 20.0%
!! ATTTCACTAGATAATGAAAA+TGG + chr4_4:32828447-32828466 None:intergenic 20.0%
!! AGTATATGACAAGATATATT+TGG - chr4_4:32828767-32828786 Msa0678040:CDS 20.0%
!! TATATTTACCTACAAACTTA+GGG + chr4_4:32827968-32827987 None:intergenic 20.0%
!! TTTCACTAGATAATGAAAAT+GGG + chr4_4:32828446-32828465 None:intergenic 20.0%
!! ATTTCACTAGATAATGAAAA+TGG + chr4_4:32828447-32828466 None:intergenic 20.0%
!! AGTATATGACAAGATATATT+TGG - chr4_4:32828767-32828786 Msa0678040:CDS 20.0%
! CTATATTTACCTACAAACTT+AGG + chr4_4:32827969-32827988 None:intergenic 25.0%
! TAGGTAAATATAGAACTTTG+CGG - chr4_4:32827976-32827995 Msa0678040:CDS 25.0%
!! TGACCATATATTTTATCTCA+AGG + chr4_4:32828032-32828051 None:intergenic 25.0%
!!! ATTGCATTGTTTTTGATTTC+AGG - chr4_4:32828072-32828091 Msa0678040:CDS 25.0%
!! AAGTTTCCTCTTTTGATATT+AGG + chr4_4:32828150-32828169 None:intergenic 25.0%
! ATAATGAAAATGGGGATAAA+GGG + chr4_4:32828437-32828456 None:intergenic 25.0%
! TTCACTAGATAATGAAAATG+GGG + chr4_4:32828445-32828464 None:intergenic 25.0%
! AGATTCATTTATAGAAGATG+TGG - chr4_4:32828521-32828540 Msa0678040:CDS 25.0%
! ATTATCCATGACAAAACTTT+CGG + chr4_4:32828610-32828629 None:intergenic 25.0%
!! TTTGTCATGGATAATGATTT+TGG - chr4_4:32828615-32828634 Msa0678040:intron 25.0%
! CTATATTTACCTACAAACTT+AGG + chr4_4:32827969-32827988 None:intergenic 25.0%
! TAGGTAAATATAGAACTTTG+CGG - chr4_4:32827976-32827995 Msa0678040:CDS 25.0%
!! TGACCATATATTTTATCTCA+AGG + chr4_4:32828032-32828051 None:intergenic 25.0%
!!! ATTGCATTGTTTTTGATTTC+AGG - chr4_4:32828072-32828091 Msa0678040:CDS 25.0%
!! AAGTTTCCTCTTTTGATATT+AGG + chr4_4:32828150-32828169 None:intergenic 25.0%
! ATAATGAAAATGGGGATAAA+GGG + chr4_4:32828437-32828456 None:intergenic 25.0%
! TTCACTAGATAATGAAAATG+GGG + chr4_4:32828445-32828464 None:intergenic 25.0%
! AGATTCATTTATAGAAGATG+TGG - chr4_4:32828521-32828540 Msa0678040:CDS 25.0%
! ATTATCCATGACAAAACTTT+CGG + chr4_4:32828610-32828629 None:intergenic 25.0%
!! TTTGTCATGGATAATGATTT+TGG - chr4_4:32828615-32828634 Msa0678040:intron 25.0%
ATTGCTTATGTCACTAGATA+TGG - chr4_4:32827921-32827940 Msa0678040:CDS 30.0%
! CCATATATTTTATCTCAAGG+AGG + chr4_4:32828029-32828048 None:intergenic 30.0%
CCTCCTTGAGATAAAATATA+TGG - chr4_4:32828026-32828045 Msa0678040:CDS 30.0%
!!! TTTTGATTTCAGGTCTTTCA+AGG - chr4_4:32828082-32828101 Msa0678040:CDS 30.0%
AAACTTTACTCAACAAGAAG+AGG - chr4_4:32828164-32828183 Msa0678040:CDS 30.0%
ATCAGAATGCATAAAAAGCT+TGG - chr4_4:32828195-32828214 Msa0678040:CDS 30.0%
TCAGAATGCATAAAAAGCTT+GGG - chr4_4:32828196-32828215 Msa0678040:CDS 30.0%
ATAAAAAGCTTGGGAATAGA+TGG - chr4_4:32828205-32828224 Msa0678040:CDS 30.0%
ATAATGAAGTGAAGAACCAT+TGG - chr4_4:32828262-32828281 Msa0678040:CDS 30.0%
ACATAATTGAATCCACACAA+GGG - chr4_4:32828349-32828368 Msa0678040:CDS 30.0%
! TTGAGGAGTAATTTGGTAAT+TGG + chr4_4:32828385-32828404 None:intergenic 30.0%
GATAATGAAAATGGGGATAA+AGG + chr4_4:32828438-32828457 None:intergenic 30.0%
! AAGATGTGGATGAAAGTTTT+TGG - chr4_4:32828535-32828554 Msa0678040:intron 30.0%
! AAGCTTTTTAGATGCTTACA+AGG - chr4_4:32828638-32828657 Msa0678040:intron 30.0%
!!! TGTCAACAGTTGATAGTTTT+TGG - chr4_4:32828661-32828680 Msa0678040:intron 30.0%
ATTGCTTATGTCACTAGATA+TGG - chr4_4:32827921-32827940 Msa0678040:CDS 30.0%
! CCATATATTTTATCTCAAGG+AGG + chr4_4:32828029-32828048 None:intergenic 30.0%
CCTCCTTGAGATAAAATATA+TGG - chr4_4:32828026-32828045 Msa0678040:CDS 30.0%
!!! TTTTGATTTCAGGTCTTTCA+AGG - chr4_4:32828082-32828101 Msa0678040:CDS 30.0%
AAACTTTACTCAACAAGAAG+AGG - chr4_4:32828164-32828183 Msa0678040:CDS 30.0%
ATCAGAATGCATAAAAAGCT+TGG - chr4_4:32828195-32828214 Msa0678040:CDS 30.0%
TCAGAATGCATAAAAAGCTT+GGG - chr4_4:32828196-32828215 Msa0678040:CDS 30.0%
ATAAAAAGCTTGGGAATAGA+TGG - chr4_4:32828205-32828224 Msa0678040:CDS 30.0%
ATAATGAAGTGAAGAACCAT+TGG - chr4_4:32828262-32828281 Msa0678040:CDS 30.0%
ACATAATTGAATCCACACAA+GGG - chr4_4:32828349-32828368 Msa0678040:CDS 30.0%
! TTGAGGAGTAATTTGGTAAT+TGG + chr4_4:32828385-32828404 None:intergenic 30.0%
GATAATGAAAATGGGGATAA+AGG + chr4_4:32828438-32828457 None:intergenic 30.0%
! AAGATGTGGATGAAAGTTTT+TGG - chr4_4:32828535-32828554 Msa0678040:intron 30.0%
! AAGCTTTTTAGATGCTTACA+AGG - chr4_4:32828638-32828657 Msa0678040:intron 30.0%
!!! TGTCAACAGTTGATAGTTTT+TGG - chr4_4:32828661-32828680 Msa0678040:intron 30.0%
!! ATTCCACTTTTGTCACAAGA+AGG + chr4_4:32827861-32827880 None:intergenic 35.0%
TTAGGTGGCTGAATTATCTA+AGG - chr4_4:32828124-32828143 Msa0678040:CDS 35.0%
CTAAGGCCTAATATCAAAAG+AGG - chr4_4:32828141-32828160 Msa0678040:CDS 35.0%
ACTTCATTATCTGTTCTTCC+CGG + chr4_4:32828252-32828271 None:intergenic 35.0%
GACATAATTGAATCCACACA+AGG - chr4_4:32828348-32828367 Msa0678040:CDS 35.0%
AACTGGATTGAGGAGTAATT+TGG + chr4_4:32828392-32828411 None:intergenic 35.0%
GGAATTGTGATCTAAAGATG+TGG + chr4_4:32828475-32828494 None:intergenic 35.0%
AGATCACAATTCCACTTCTT+TGG - chr4_4:32828482-32828501 Msa0678040:CDS 35.0%
! TCCACTTCTTTGGATGATTT+TGG - chr4_4:32828492-32828511 Msa0678040:CDS 35.0%
ACCAAAATCATCCAAAGAAG+TGG + chr4_4:32828496-32828515 None:intergenic 35.0%
AATCTTTCCAACACATCAAG+TGG - chr4_4:32828564-32828583 Msa0678040:intron 35.0%
TGACAAAACTTTCGGTAGTA+TGG + chr4_4:32828602-32828621 None:intergenic 35.0%
!! TACTACCGAAAGTTTTGTCA+TGG - chr4_4:32828602-32828621 Msa0678040:intron 35.0%
! TTTTTGGACACAACCATATG+AGG - chr4_4:32828677-32828696 Msa0678040:CDS 35.0%
!! AAAGGTATCAGTAGTTCAGT+TGG + chr4_4:32828720-32828739 None:intergenic 35.0%
! TTTTCAGATTCCATCGACAA+AGG + chr4_4:32828738-32828757 None:intergenic 35.0%
!! ATTCCACTTTTGTCACAAGA+AGG + chr4_4:32827861-32827880 None:intergenic 35.0%
TTAGGTGGCTGAATTATCTA+AGG - chr4_4:32828124-32828143 Msa0678040:CDS 35.0%
CTAAGGCCTAATATCAAAAG+AGG - chr4_4:32828141-32828160 Msa0678040:CDS 35.0%
ACTTCATTATCTGTTCTTCC+CGG + chr4_4:32828252-32828271 None:intergenic 35.0%
GACATAATTGAATCCACACA+AGG - chr4_4:32828348-32828367 Msa0678040:CDS 35.0%
AACTGGATTGAGGAGTAATT+TGG + chr4_4:32828392-32828411 None:intergenic 35.0%
GGAATTGTGATCTAAAGATG+TGG + chr4_4:32828475-32828494 None:intergenic 35.0%
AGATCACAATTCCACTTCTT+TGG - chr4_4:32828482-32828501 Msa0678040:CDS 35.0%
! TCCACTTCTTTGGATGATTT+TGG - chr4_4:32828492-32828511 Msa0678040:CDS 35.0%
ACCAAAATCATCCAAAGAAG+TGG + chr4_4:32828496-32828515 None:intergenic 35.0%
AATCTTTCCAACACATCAAG+TGG - chr4_4:32828564-32828583 Msa0678040:intron 35.0%
TGACAAAACTTTCGGTAGTA+TGG + chr4_4:32828602-32828621 None:intergenic 35.0%
!! TACTACCGAAAGTTTTGTCA+TGG - chr4_4:32828602-32828621 Msa0678040:intron 35.0%
! TTTTTGGACACAACCATATG+AGG - chr4_4:32828677-32828696 Msa0678040:CDS 35.0%
!! AAAGGTATCAGTAGTTCAGT+TGG + chr4_4:32828720-32828739 None:intergenic 35.0%
! TTTTCAGATTCCATCGACAA+AGG + chr4_4:32828738-32828757 None:intergenic 35.0%
ACTCCTTCTTGTGACAAAAG+TGG - chr4_4:32827855-32827874 Msa0678040:CDS 40.0%
CTTGTGACAAAAGTGGAATG+AGG - chr4_4:32827862-32827881 Msa0678040:CDS 40.0%
GACAAAAGTGGAATGAGGAA+AGG - chr4_4:32827867-32827886 Msa0678040:CDS 40.0%
ATGTCACTAGATATGGTTGC+TGG - chr4_4:32827928-32827947 Msa0678040:CDS 40.0%
CTAGATATGGTTGCTGGAAT+TGG - chr4_4:32827934-32827953 Msa0678040:CDS 40.0%
!! AGAACTTTGCGGTATTGACT+TGG - chr4_4:32827987-32828006 Msa0678040:CDS 40.0%
!! GAACTTTGCGGTATTGACTT+GGG - chr4_4:32827988-32828007 Msa0678040:CDS 40.0%
! ATTTCAGGTCTTTCAAGGTG+TGG - chr4_4:32828087-32828106 Msa0678040:CDS 40.0%
! TTTCAGGTCTTTCAAGGTGT+GGG - chr4_4:32828088-32828107 Msa0678040:CDS 40.0%
GAATAGATGGTCAACCATTG+CGG - chr4_4:32828218-32828237 Msa0678040:CDS 40.0%
ACTACTGATACCTTTGTCGA+TGG - chr4_4:32828725-32828744 Msa0678040:CDS 40.0%
ACTCCTTCTTGTGACAAAAG+TGG - chr4_4:32827855-32827874 Msa0678040:CDS 40.0%
CTTGTGACAAAAGTGGAATG+AGG - chr4_4:32827862-32827881 Msa0678040:CDS 40.0%
GACAAAAGTGGAATGAGGAA+AGG - chr4_4:32827867-32827886 Msa0678040:CDS 40.0%
ATGTCACTAGATATGGTTGC+TGG - chr4_4:32827928-32827947 Msa0678040:CDS 40.0%
CTAGATATGGTTGCTGGAAT+TGG - chr4_4:32827934-32827953 Msa0678040:CDS 40.0%
!! AGAACTTTGCGGTATTGACT+TGG - chr4_4:32827987-32828006 Msa0678040:CDS 40.0%
!! GAACTTTGCGGTATTGACTT+GGG - chr4_4:32827988-32828007 Msa0678040:CDS 40.0%
! ATTTCAGGTCTTTCAAGGTG+TGG - chr4_4:32828087-32828106 Msa0678040:CDS 40.0%
! TTTCAGGTCTTTCAAGGTGT+GGG - chr4_4:32828088-32828107 Msa0678040:CDS 40.0%
GAATAGATGGTCAACCATTG+CGG - chr4_4:32828218-32828237 Msa0678040:CDS 40.0%
ACTACTGATACCTTTGTCGA+TGG - chr4_4:32828725-32828744 Msa0678040:CDS 40.0%
GTGGAATGAGGAAAGGAACA+TGG - chr4_4:32827874-32827893 Msa0678040:CDS 45.0%
! CATGGACTGCTGAAGAAGAT+AGG - chr4_4:32827892-32827911 Msa0678040:CDS 45.0%
CGACAACTCCCTAAGTTTGT+AGG - chr4_4:32827957-32827976 Msa0678040:CDS 45.0%
GTGGGAAGAGTTGTAGACTT+AGG - chr4_4:32828106-32828125 Msa0678040:CDS 45.0%
GGAAGAGTTGTAGACTTAGG+TGG - chr4_4:32828109-32828128 Msa0678040:CDS 45.0%
! TCTTGAGAGAAGTGTGCCAA+TGG + chr4_4:32828281-32828300 None:intergenic 45.0%
GGATATATCTCTCCCTTGTG+TGG + chr4_4:32828364-32828383 None:intergenic 45.0%
GAGATTTGGGAACTGGATTG+AGG + chr4_4:32828402-32828421 None:intergenic 45.0%
TCCCAAATCTCAGACACCAA+TGG - chr4_4:32828411-32828430 Msa0678040:CDS 45.0%
! GCCATTGGTGTCTGAGATTT+GGG + chr4_4:32828415-32828434 None:intergenic 45.0%
AAATGGGGATAAAGGGCCAT+TGG + chr4_4:32828430-32828449 None:intergenic 45.0%
CACTGTTCCACTTGATGTGT+TGG + chr4_4:32828574-32828593 None:intergenic 45.0%
AGGGACATGTCAACCTCATA+TGG + chr4_4:32828693-32828712 None:intergenic 45.0%
CAGTAGTTCAGTTGGAACGA+GGG + chr4_4:32828712-32828731 None:intergenic 45.0%
TCAGTAGTTCAGTTGGAACG+AGG + chr4_4:32828713-32828732 None:intergenic 45.0%
GTGGAATGAGGAAAGGAACA+TGG - chr4_4:32827874-32827893 Msa0678040:CDS 45.0%
! CATGGACTGCTGAAGAAGAT+AGG - chr4_4:32827892-32827911 Msa0678040:CDS 45.0%
CGACAACTCCCTAAGTTTGT+AGG - chr4_4:32827957-32827976 Msa0678040:CDS 45.0%
GTGGGAAGAGTTGTAGACTT+AGG - chr4_4:32828106-32828125 Msa0678040:CDS 45.0%
GGAAGAGTTGTAGACTTAGG+TGG - chr4_4:32828109-32828128 Msa0678040:CDS 45.0%
! TCTTGAGAGAAGTGTGCCAA+TGG + chr4_4:32828281-32828300 None:intergenic 45.0%
GGATATATCTCTCCCTTGTG+TGG + chr4_4:32828364-32828383 None:intergenic 45.0%
GAGATTTGGGAACTGGATTG+AGG + chr4_4:32828402-32828421 None:intergenic 45.0%
TCCCAAATCTCAGACACCAA+TGG - chr4_4:32828411-32828430 Msa0678040:CDS 45.0%
! GCCATTGGTGTCTGAGATTT+GGG + chr4_4:32828415-32828434 None:intergenic 45.0%
AAATGGGGATAAAGGGCCAT+TGG + chr4_4:32828430-32828449 None:intergenic 45.0%
CACTGTTCCACTTGATGTGT+TGG + chr4_4:32828574-32828593 None:intergenic 45.0%
AGGGACATGTCAACCTCATA+TGG + chr4_4:32828693-32828712 None:intergenic 45.0%
CAGTAGTTCAGTTGGAACGA+GGG + chr4_4:32828712-32828731 None:intergenic 45.0%
TCAGTAGTTCAGTTGGAACG+AGG + chr4_4:32828713-32828732 None:intergenic 45.0%
AACCATTGCGGCTGAGTTAC+CGG - chr4_4:32828230-32828249 Msa0678040:CDS 50.0%
! GGTGTCTGAGATTTGGGAAC+TGG + chr4_4:32828409-32828428 None:intergenic 50.0%
! GGCCATTGGTGTCTGAGATT+TGG + chr4_4:32828416-32828435 None:intergenic 50.0%
AACCATTGCGGCTGAGTTAC+CGG - chr4_4:32828230-32828249 Msa0678040:CDS 50.0%
! GGTGTCTGAGATTTGGGAAC+TGG + chr4_4:32828409-32828428 None:intergenic 50.0%
! GGCCATTGGTGTCTGAGATT+TGG + chr4_4:32828416-32828435 None:intergenic 50.0%
!! TGCGGTATTGACTTGGGACC+TGG - chr4_4:32827994-32828013 Msa0678040:CDS 55.0%
!! GCGGTATTGACTTGGGACCT+GGG - chr4_4:32827995-32828014 Msa0678040:CDS 55.0%
ACCATTGCGGCTGAGTTACC+GGG - chr4_4:32828231-32828250 Msa0678040:CDS 55.0%
!! TGCGGTATTGACTTGGGACC+TGG - chr4_4:32827994-32828013 Msa0678040:CDS 55.0%
!! GCGGTATTGACTTGGGACCT+GGG - chr4_4:32827995-32828014 Msa0678040:CDS 55.0%
ACCATTGCGGCTGAGTTACC+GGG - chr4_4:32828231-32828250 Msa0678040:CDS 55.0%
! TCAAGGAGGAGCACACTCCC+AGG + chr4_4:32828015-32828034 None:intergenic 60.0%
TCCCGGTAACTCAGCCGCAA+TGG + chr4_4:32828235-32828254 None:intergenic 60.0%
! TCAAGGAGGAGCACACTCCC+AGG + chr4_4:32828015-32828034 None:intergenic 60.0%
TCCCGGTAACTCAGCCGCAA+TGG + chr4_4:32828235-32828254 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 32827846 32828800 32827846 ID=Msa0678040;Name=Msa0678040
chr4_4 mRNA 32827846 32828800 32827846 ID=Msa0678040-mRNA-1;Parent=Msa0678040;Name=Msa0678040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|279
chr4_4 exon 32828668 32828800 32828668 ID=Msa0678040-mRNA-1:exon:8073;Parent=Msa0678040-mRNA-1
chr4_4 exon 32827846 32828552 32827846 ID=Msa0678040-mRNA-1:exon:8072;Parent=Msa0678040-mRNA-1
chr4_4 CDS 32828668 32828800 32828668 ID=Msa0678040-mRNA-1:cds;Parent=Msa0678040-mRNA-1
chr4_4 CDS 32827846 32828552 32827846 ID=Msa0678040-mRNA-1:cds;Parent=Msa0678040-mRNA-1
Gene Sequence

>Msa0678040

ATGGCAAGAACTCCTTCTTGTGACAAAAGTGGAATGAGGAAAGGAACATGGACTGCTGAAGAAGATAGGAAATTAATTGCTTATGTCACTAGATATGGTTGCTGGAATTGGCGACAACTCCCTAAGTTTGTAGGTCTTTCAAGGTGTGGGAAGAGTTGTAGACTTAGGTGGCTGAATTATCTAAGGCCTAATATCAAAAGAGGAAACTTTACTCAACAAGAAGAGGAGTTGATTATCAGAATGCATAAAAAGCTTGGGAATAGATGGTCAACCATTGCGGCTGAGTTACCGGGAAGAACAGATAATGAAGTGAAGAACCATTGGCACACTTCTCTCAAGAAGAGAGCTATAGATAACATAGTCACGAATGAAGAAACGAAATCAAAAGACATAATTGAATCCACACAAGGGAGAGATATATCCAATTACCAAATTACTCCTCAATCCAGTTCCCAAATCTCAGACACCAATGGCCCTTTATCCCCATTTTCATTATCTAGTGAAATCACTTCCACATCTTTAGATCACAATTCCACTTCTTTGGATGATTTTGGTTTTCTAGATTCATTTATAGAAGATGTGGATGAAAGTTTTTGGCTTCATAATCTTTCCAACACATCAAGTGGAACAGTGCAAAACCATACTACCGAAAGTTTTGTCATGGATAATGATTTTGGAAGCTTTTTAGATGCTTACAAGGTGTCAACAGTTGATAGTTTTTGGACACAACCATATGAGGTTGACATGTCCCTCGTTCCAACTGAACTACTGATACCTTTGTCGATGGAATCTGAAAATTTTTCTATAGTATATGACAAGATATATTTGGAGTTGAAATAA
Protein sequence

>Msa0678040

MARTPSCDKSGMRKGTWTAEEDRKLIAYVTRYGCWNWRQLPKFVGLSRCGKSCRLRWLNYLRPNIKRGNFTQQEEELIIRMHKKLGNRWSTIAAELPGRTDNEVKNHWHTSLKKRAIDNIVTNEETKSKDIIESTQGRDISNYQITPQSSSQISDTNGPLSPFSLSSEITSTSLDHNSTSLDDFGFLDSFIEDVDESFWLHNLSNTSSGTVQNHTTESFVMDNDFGSFLDAYKVSTVDSFWTQPYEVDMSLVPTELLIPLSMESENFSIVYDKIYLELK*