Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682200 | XP_013455950.1 | 93.388 | 242 | 7 | 3 | 1 | 242 | 2 | 234 | 3.02e-162 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682200 | sp|O49818|LGUL_CICAR | 92.147 | 191 | 10 | 1 | 52 | 242 | 1 | 186 | 1.34e-130 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682200 | A0A072UKQ3 | 93.388 | 242 | 7 | 3 | 1 | 242 | 2 | 234 | 1.44e-162 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033050 | Msa0682200 | 0.805501 | 1.294790e-49 | -8.615850e-47 |
| Msa0633720 | Msa0682200 | 0.850606 | 1.523291e-60 | -8.615850e-47 |
| Msa0682200 | Msa0766900 | 0.806175 | 9.345283e-50 | -8.615850e-47 |
| Msa0682200 | Msa1120660 | 0.811904 | 5.542795e-51 | -8.615850e-47 |
| Msa0682200 | Msa1157030 | 0.802922 | 4.457450e-49 | -8.615850e-47 |
| Msa0682200 | Msa1194300 | 0.813408 | 2.599101e-51 | -8.615850e-47 |
| Msa0682200 | Msa1194330 | 0.812541 | 4.024934e-51 | -8.615850e-47 |
| Msa0682200 | Msa1403700 | 0.801719 | 7.885616e-49 | -8.615850e-47 |
| Msa0152640 | Msa0682200 | -0.802336 | 5.888769e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682200 | MtrunA17_Chr4g0028391 | 93.388 | 242 | 7 | 3 | 1 | 242 | 2 | 234 | 2.78e-166 | 458 |
| Msa0682200 | MtrunA17_Chr8g0390251 | 32.692 | 156 | 69 | 7 | 80 | 231 | 86 | 209 | 1.77e-15 | 74.7 |
| Msa0682200 | MtrunA17_Chr4g0075021 | 28.662 | 157 | 80 | 5 | 80 | 234 | 17 | 143 | 6.91e-13 | 66.6 |
| Msa0682200 | MtrunA17_Chr6g0486631 | 32.051 | 156 | 70 | 8 | 80 | 231 | 87 | 210 | 2.36e-12 | 65.5 |
| Msa0682200 | MtrunA17_Chr2g0288571 | 29.870 | 154 | 76 | 6 | 82 | 233 | 24 | 147 | 4.55e-12 | 64.3 |
| Msa0682200 | MtrunA17_Chr3g0140091 | 29.677 | 155 | 73 | 7 | 82 | 232 | 91 | 213 | 9.21e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0682200 | AT1G08110.3 | 79.894 | 189 | 33 | 1 | 54 | 242 | 2 | 185 | 1.14e-106 | 306 |
| Msa0682200 | AT1G08110.2 | 79.894 | 189 | 33 | 1 | 54 | 242 | 2 | 185 | 1.14e-106 | 306 |
| Msa0682200 | AT1G08110.1 | 79.894 | 189 | 33 | 1 | 54 | 242 | 2 | 185 | 1.14e-106 | 306 |
| Msa0682200 | AT1G08110.4 | 76.471 | 204 | 40 | 3 | 41 | 242 | 38 | 235 | 1.43e-106 | 307 |
| Msa0682200 | AT1G67280.2 | 34.615 | 156 | 66 | 7 | 80 | 231 | 1 | 124 | 5.17e-16 | 75.5 |
| Msa0682200 | AT1G67280.1 | 34.615 | 156 | 66 | 7 | 80 | 231 | 89 | 212 | 5.75e-16 | 76.6 |
| Msa0682200 | AT1G11840.5 | 32.468 | 154 | 68 | 7 | 82 | 231 | 20 | 141 | 5.73e-14 | 69.3 |
| Msa0682200 | AT1G11840.6 | 31.217 | 189 | 92 | 8 | 49 | 231 | 24 | 180 | 1.36e-13 | 69.3 |
| Msa0682200 | AT1G11840.4 | 32.468 | 154 | 68 | 7 | 82 | 231 | 20 | 141 | 1.43e-13 | 68.9 |
| Msa0682200 | AT1G11840.1 | 32.468 | 154 | 68 | 7 | 82 | 231 | 20 | 141 | 1.43e-13 | 68.9 |
| Msa0682200 | AT1G11840.3 | 32.468 | 154 | 68 | 7 | 82 | 231 | 20 | 141 | 1.43e-13 | 68.9 |
| Msa0682200 | AT1G11840.2 | 32.468 | 154 | 68 | 7 | 82 | 231 | 20 | 141 | 1.43e-13 | 68.9 |
Find 68 sgRNAs with CRISPR-Local
Find 445 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACATGATATGATATTTAA+AGG | 0.215830 | 4_4:+43308898 | None:intergenic |
| GAAGTTCAGCTTGTACTTTA+TGG | 0.231092 | 4_4:-43314854 | Msa0682200:CDS |
| GAAAGGGATAGCATTTATTA+AGG | 0.277714 | 4_4:-43311164 | Msa0682200:CDS |
| AATTCTGATCCTCGTGGTTT+TGG | 0.281200 | 4_4:-43314204 | Msa0682200:intron |
| TTAAGGATCCTGATGGATAC+TGG | 0.291792 | 4_4:-43311147 | Msa0682200:CDS |
| AAGTTCAGCTTGTACTTTAT+GGG | 0.322056 | 4_4:-43314853 | Msa0682200:CDS |
| CATCTCGTTGCAGATATAAT+CGG | 0.322327 | 4_4:-43309618 | Msa0682200:three_prime_UTR |
| TTTGAAAGAGGTGATTGAAT+AGG | 0.323874 | 4_4:+43316277 | None:intergenic |
| GTAAAGTAATATACAGTAAC+TGG | 0.323998 | 4_4:-43314269 | Msa0682200:CDS |
| AAATCTTTCACATGCTTTGA+AGG | 0.328891 | 4_4:+43313361 | None:intergenic |
| TAAGATAAACAAACCCCTTC+AGG | 0.355776 | 4_4:-43311073 | Msa0682200:intron |
| TTGAAAGAGGTGATTGAATA+GGG | 0.359581 | 4_4:+43316278 | None:intergenic |
| GTTTAGTTTGCTTAAGAGAT+TGG | 0.379480 | 4_4:-43314890 | Msa0682200:intron |
| TTGGAACCTTGAGGGAGAAA+TGG | 0.383483 | 4_4:+43316242 | None:intergenic |
| AAAACAATTGGAAATGTAAC+AGG | 0.384667 | 4_4:-43311106 | Msa0682200:CDS |
| AGTTTGGACCTTTGCTCAAA+AGG | 0.403037 | 4_4:-43314370 | Msa0682200:CDS |
| AATTATTCATTCTTCCTTGA+GGG | 0.412632 | 4_4:+43309538 | None:intergenic |
| AATAGGGAGAGGTTGGTGTT+TGG | 0.414049 | 4_4:+43316294 | None:intergenic |
| GTTCTATCAACCGAGTTACT+TGG | 0.418891 | 4_4:+43314393 | None:intergenic |
| ACTACTTGCTTTGTAAGTCT+TGG | 0.423545 | 4_4:-43309574 | Msa0682200:three_prime_UTR |
| GTGATTGAATAGGGAGAGGT+TGG | 0.456686 | 4_4:+43316287 | None:intergenic |
| GCGATTAATTGGAACCTTGA+GGG | 0.456779 | 4_4:+43316234 | None:intergenic |
| CCCATTCCATTTCTCCCTCA+AGG | 0.458512 | 4_4:-43316248 | Msa0682200:intron |
| TTGTGATACCCTTTGAACTC+TGG | 0.470702 | 4_4:+43314231 | None:intergenic |
| AACCGTAGATGAAGCTACTA+AGG | 0.475511 | 4_4:-43316064 | Msa0682200:CDS |
| TCTACGGTTGCATGGAGACC+AGG | 0.477171 | 4_4:+43316078 | None:intergenic |
| ATCTCGTTGCAGATATAATC+GGG | 0.480483 | 4_4:-43309617 | Msa0682200:three_prime_UTR |
| CTTGTACTTTATGGGGTATG+AGG | 0.487117 | 4_4:-43314845 | Msa0682200:intron |
| ACTCGGTTGATAGAACAGTT+TGG | 0.493547 | 4_4:-43314386 | Msa0682200:CDS |
| AGAGGTGATTGAATAGGGAG+AGG | 0.494979 | 4_4:+43316283 | None:intergenic |
| ATTTCAATCCAGTATCCATC+AGG | 0.500386 | 4_4:+43311139 | None:intergenic |
| TACAAGCTGAACTTCATCTC+AGG | 0.504945 | 4_4:+43314862 | None:intergenic |
| CGATGAAGCGAAAACGAGAA+AGG | 0.511731 | 4_4:+43316317 | None:intergenic |
| AAAGTGATCCAGAGTTCAAA+GGG | 0.513681 | 4_4:-43314239 | Msa0682200:CDS |
| ACCTTGAGGGAGAAATGGAA+TGG | 0.523169 | 4_4:+43316247 | None:intergenic |
| AATGGCTGCTTCGGAATCAA+AGG | 0.539933 | 4_4:-43316118 | Msa0682200:CDS |
| CCTTGAGGGAGAAATGGAAT+GGG | 0.540314 | 4_4:+43316248 | None:intergenic |
| TAGCTTCATCTACGGTTGCA+TGG | 0.541926 | 4_4:+43316070 | None:intergenic |
| GTAGTCGAAGCAGAATGTTA+AGG | 0.543475 | 4_4:-43309514 | Msa0682200:three_prime_UTR |
| ATGTGAAAGATTTCAGAACC+TGG | 0.545629 | 4_4:-43313351 | Msa0682200:CDS |
| TTCGGAATCAAAGGAATCAC+CGG | 0.552614 | 4_4:-43316109 | Msa0682200:CDS |
| TGGAGACCAGGGTTGTTAGC+CGG | 0.553858 | 4_4:+43316090 | None:intergenic |
| GAAAGTGATCCAGAGTTCAA+AGG | 0.558602 | 4_4:-43314240 | Msa0682200:CDS |
| TCTTAACAAACTCAACTCCC+AGG | 0.559513 | 4_4:+43313333 | None:intergenic |
| AATGGGATTGAATTTGAAAG+AGG | 0.562276 | 4_4:+43316265 | None:intergenic |
| GCATTTATTAAGGATCCTGA+TGG | 0.563476 | 4_4:-43311154 | Msa0682200:CDS |
| AGTTCAGCTTGTACTTTATG+GGG | 0.564812 | 4_4:-43314852 | Msa0682200:CDS |
| AAATTATTCATTCTTCCTTG+AGG | 0.566531 | 4_4:+43309537 | None:intergenic |
| ACCCTTAGTAGCTTCATCTA+CGG | 0.570203 | 4_4:+43316062 | None:intergenic |
| GTACTTCTTCAACTCCCTCA+AGG | 0.575130 | 4_4:-43309552 | Msa0682200:three_prime_UTR |
| CTCTCATCTTCAAAATCACA+AGG | 0.581280 | 4_4:-43316405 | Msa0682200:five_prime_UTR |
| GAATCACCGGCTAACAACCC+TGG | 0.584889 | 4_4:-43316096 | Msa0682200:CDS |
| CTTACGTTTACAGGACACAT+TGG | 0.585380 | 4_4:-43313401 | Msa0682200:intron |
| AACTACAGTCTCTACCTGAA+GGG | 0.592876 | 4_4:+43311059 | None:intergenic |
| ATCTGAAGCTCCAAGTAACT+CGG | 0.594666 | 4_4:-43314403 | Msa0682200:CDS |
| TCTACTATATACTGATTACA+AGG | 0.594713 | 4_4:+43309456 | None:intergenic |
| TAAAGTAATATACAGTAACT+GGG | 0.605451 | 4_4:-43314268 | Msa0682200:CDS |
| TTTGTTAAGAAACCAGAGGA+TGG | 0.620597 | 4_4:-43313320 | Msa0682200:intron |
| ACTACAGTCTCTACCTGAAG+GGG | 0.624797 | 4_4:+43311060 | None:intergenic |
| AAGCAAGTAGTCAAGCACAT+TGG | 0.626268 | 4_4:+43309586 | None:intergenic |
| TGTGAAAGATTTCAGAACCT+GGG | 0.628860 | 4_4:-43313350 | Msa0682200:CDS |
| ACCGTAGATGAAGCTACTAA+GGG | 0.644449 | 4_4:-43316063 | Msa0682200:CDS |
| CTACGGTTGCATGGAGACCA+GGG | 0.651166 | 4_4:+43316079 | None:intergenic |
| TGAGTTTGTTAAGAAACCAG+AGG | 0.656268 | 4_4:-43313324 | Msa0682200:CDS |
| GAGTTCAAAGGGTATCACAA+TGG | 0.683137 | 4_4:-43314228 | Msa0682200:CDS |
| AATGGCAATTCTGATCCTCG+TGG | 0.690634 | 4_4:-43314210 | Msa0682200:CDS |
| AAAGTAATATACAGTAACTG+GGG | 0.707954 | 4_4:-43314267 | Msa0682200:CDS |
| TATCACTTACCAAAACCACG+AGG | 0.836687 | 4_4:+43314195 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTATAAAAAATGATTTAT+TGG | + | chr4_4:43309848-43309867 | None:intergenic | 10.0% |
| !!! | AATAAATCATTTTTTATAAC+TGG | - | chr4_4:43309847-43309866 | Msa0682200:intron | 10.0% |
| !!! | ATAAATCATTTTTTATAACT+GGG | - | chr4_4:43309848-43309867 | Msa0682200:intron | 10.0% |
| !! | TTTATAATTCATAAATATAG+AGG | - | chr4_4:43309983-43310002 | Msa0682200:intron | 10.0% |
| !! | TATAAATAAAAGTTAATTAC+AGG | + | chr4_4:43311698-43311717 | None:intergenic | 10.0% |
| !!! | ATTAAAATTAAATGTGTTTT+TGG | + | chr4_4:43315396-43315415 | None:intergenic | 10.0% |
| !! | TTCTATAATAGAAGATAAAA+TGG | - | chr4_4:43309373-43309392 | Msa0682200:intron | 15.0% |
| !!! | AAAAAAAATTGACTGTATTT+TGG | + | chr4_4:43309603-43309622 | None:intergenic | 15.0% |
| !!! | ATATCAAAAAGTGATTATTT+TGG | + | chr4_4:43309738-43309757 | None:intergenic | 15.0% |
| !! | TACATTAAAATAAAACTACT+CGG | + | chr4_4:43310797-43310816 | None:intergenic | 15.0% |
| !!! | CATTTTTATAGATATTTCAA+GGG | - | chr4_4:43312163-43312182 | Msa0682200:intron | 15.0% |
| !! | AAAACATGTATAAGTAAATA+AGG | + | chr4_4:43314246-43314265 | None:intergenic | 15.0% |
| !!! | AATTAATAAAGTAGTTTTGA+TGG | + | chr4_4:43315137-43315156 | None:intergenic | 15.0% |
| !! | TAACATGATATGATATTTAA+AGG | + | chr4_4:43316371-43316390 | None:intergenic | 15.0% |
| !!! | ATCACTTTTTGATATTTGTT+TGG | - | chr4_4:43309743-43309762 | Msa0682200:intron | 20.0% |
| !!! | CATTTTTTAAGACCTTTAAA+TGG | - | chr4_4:43310582-43310601 | Msa0682200:intron | 20.0% |
| !!! | TTTTCATAGTTACCATTTAA+AGG | + | chr4_4:43310597-43310616 | None:intergenic | 20.0% |
| !! | AATATGTGTAATTAATGCAT+TGG | - | chr4_4:43310615-43310634 | Msa0682200:intron | 20.0% |
| !!! | TATGAAATAACTTCTTCTTT+TGG | - | chr4_4:43310661-43310680 | Msa0682200:intron | 20.0% |
| !! | ACATTAAAATAAAACTACTC+GGG | + | chr4_4:43310796-43310815 | None:intergenic | 20.0% |
| !! | TAAAGTAATATACAGTAACT+GGG | - | chr4_4:43310998-43311017 | Msa0682200:intron | 20.0% |
| !! | ATAAGAGAAACTATTAAGAA+AGG | - | chr4_4:43311280-43311299 | Msa0682200:intron | 20.0% |
| !!! | TTATGTCTATCAACATTTTT+GGG | + | chr4_4:43311619-43311638 | None:intergenic | 20.0% |
| !!! | ATTATGTCTATCAACATTTT+TGG | + | chr4_4:43311620-43311639 | None:intergenic | 20.0% |
| !! | TTCATTATGAAATGAAAACT+AGG | + | chr4_4:43311671-43311690 | None:intergenic | 20.0% |
| !! | ATATATCCAATAAATAACTG+TGG | + | chr4_4:43311785-43311804 | None:intergenic | 20.0% |
| !! | ACTAAAAAAAACATAACAGA+TGG | + | chr4_4:43312114-43312133 | None:intergenic | 20.0% |
| !! | CCTTGAAATATCTATAAAAA+TGG | + | chr4_4:43312165-43312184 | None:intergenic | 20.0% |
| !!! | CCATTTTTATAGATATTTCA+AGG | - | chr4_4:43312162-43312181 | Msa0682200:intron | 20.0% |
| !!! | CGAAAAAGTTTTTTAAAAAG+AGG | + | chr4_4:43312411-43312430 | None:intergenic | 20.0% |
| !! | TTGAAATCAAATGACTTTAT+AGG | - | chr4_4:43312456-43312475 | Msa0682200:intron | 20.0% |
| !! | AATGATAATAGAATAAGCAA+TGG | - | chr4_4:43312495-43312514 | Msa0682200:intron | 20.0% |
| !! | AAGTTAATCTCTAATATGAA+AGG | - | chr4_4:43312699-43312718 | Msa0682200:intron | 20.0% |
| !! | ATGTTTACAATAGTTGATTA+AGG | - | chr4_4:43312947-43312966 | Msa0682200:intron | 20.0% |
| !!! | TCGAAGCAAATTTTATAAAA+GGG | + | chr4_4:43313643-43313662 | None:intergenic | 20.0% |
| !!! | TTCGAAGCAAATTTTATAAA+AGG | + | chr4_4:43313644-43313663 | None:intergenic | 20.0% |
| !!! | ATATGGAAATTGATTTTGAT+GGG | - | chr4_4:43313895-43313914 | Msa0682200:intron | 20.0% |
| !!! | CTTTTAGAACTTTATTTTGA+TGG | - | chr4_4:43313932-43313951 | Msa0682200:intron | 20.0% |
| !!! | TTCAATTTATTTGTTTTTGC+AGG | - | chr4_4:43314073-43314092 | Msa0682200:intron | 20.0% |
| !! | ATGTATAAGTAAATAAGGTA+CGG | + | chr4_4:43314241-43314260 | None:intergenic | 20.0% |
| !! | ATGCATATAACAAACTAATT+TGG | + | chr4_4:43314391-43314410 | None:intergenic | 20.0% |
| !! | ATGCTTATAACAAACTAATT+TGG | + | chr4_4:43314421-43314440 | None:intergenic | 20.0% |
| !! | TATTGTACTTTGTTAGATTA+AGG | - | chr4_4:43314540-43314559 | Msa0682200:intron | 20.0% |
| !!! | AGAAATATTGTAGTAGTTTT+GGG | + | chr4_4:43314634-43314653 | None:intergenic | 20.0% |
| !! | TTAACTCATTATATAGCATA+TGG | + | chr4_4:43315224-43315243 | None:intergenic | 20.0% |
| !!! | AACTAAAACAGTGTTTTATA+TGG | + | chr4_4:43315260-43315279 | None:intergenic | 20.0% |
| !! | AAGATGAGAAAAAAAATTGT+AGG | - | chr4_4:43315337-43315356 | Msa0682200:intron | 20.0% |
| !! | AGATGAGAAAAAAAATTGTA+GGG | - | chr4_4:43315338-43315357 | Msa0682200:intron | 20.0% |
| !!! | TTTTGGTTATTATAAAATCG+CGG | + | chr4_4:43315379-43315398 | None:intergenic | 20.0% |
| !!! | TAATTTTAATACAAGTCACT+TGG | - | chr4_4:43315406-43315425 | Msa0682200:intron | 20.0% |
| !!! | CATTTGTTATAAAATCTTCA+TGG | - | chr4_4:43315608-43315627 | Msa0682200:intron | 20.0% |
| !!! | ATGTTTGGTTGATAAAATTA+CGG | + | chr4_4:43316068-43316087 | None:intergenic | 20.0% |
| !!! | AGAGTATTTGTAATAAAGAT+TGG | - | chr4_4:43316118-43316137 | Msa0682200:CDS | 20.0% |
| !! | TTTGTTTCCAATCAATAAAA+TGG | + | chr4_4:43316152-43316171 | None:intergenic | 20.0% |
| !!! | TATATATAGTTGGTCTTATT+TGG | + | chr4_4:43316175-43316194 | None:intergenic | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+TGG | + | chr4_4:43309400-43309419 | None:intergenic | 25.0% |
| !!! | ATTATTTTGTAAGCTTGTCA+AGG | - | chr4_4:43309450-43309469 | Msa0682200:three_prime_UTR | 25.0% |
| !!! | GCTATTTTATTAGCTATCTA+CGG | - | chr4_4:43309637-43309656 | Msa0682200:intron | 25.0% |
| ! | CAAACAATAAAAATCAGAAG+GGG | + | chr4_4:43310085-43310104 | None:intergenic | 25.0% |
| ! | GCAAACAATAAAAATCAGAA+GGG | + | chr4_4:43310086-43310105 | None:intergenic | 25.0% |
| ! | TGCAAACAATAAAAATCAGA+AGG | + | chr4_4:43310087-43310106 | None:intergenic | 25.0% |
| ! | TAAAAATCAAGGCTAACTTT+GGG | + | chr4_4:43310163-43310182 | None:intergenic | 25.0% |
| ! | ATAAAAATCAAGGCTAACTT+TGG | + | chr4_4:43310164-43310183 | None:intergenic | 25.0% |
| ! | ACAGAATATAAGTGTTACAA+TGG | + | chr4_4:43310244-43310263 | None:intergenic | 25.0% |
| ! | TTGTAACACTTATATTCTGT+TGG | - | chr4_4:43310244-43310263 | Msa0682200:intron | 25.0% |
| !!! | TGGATTGGCAATATAAATTT+AGG | - | chr4_4:43310534-43310553 | Msa0682200:intron | 25.0% |
| !! | GGATTGGCAATATAAATTTA+GGG | - | chr4_4:43310535-43310554 | Msa0682200:intron | 25.0% |
| ! | TAACATATGAAGTATGAACA+TGG | + | chr4_4:43310758-43310777 | None:intergenic | 25.0% |
| ! | GTAAAGTAATATACAGTAAC+TGG | - | chr4_4:43310997-43311016 | Msa0682200:intron | 25.0% |
| ! | AAAGTAATATACAGTAACTG+GGG | - | chr4_4:43310999-43311018 | Msa0682200:intron | 25.0% |
| ! | CTGTAATGACATTGTTAATT+AGG | - | chr4_4:43311413-43311432 | Msa0682200:intron | 25.0% |
| ! | CATCATATGATACAAATCAA+TGG | + | chr4_4:43311488-43311507 | None:intergenic | 25.0% |
| !! | TATGTCTATCAACATTTTTG+GGG | + | chr4_4:43311618-43311637 | None:intergenic | 25.0% |
| !! | ATGATATTTCCATTTTACTC+TGG | - | chr4_4:43311642-43311661 | Msa0682200:intron | 25.0% |
| !! | TGTGTTATTCATTACCTTAT+TGG | - | chr4_4:43311806-43311825 | Msa0682200:intron | 25.0% |
| !! | GTGTTATTCATTACCTTATT+GGG | - | chr4_4:43311807-43311826 | Msa0682200:intron | 25.0% |
| !! | TAAAAATGGATTTCATCATG+TGG | + | chr4_4:43312151-43312170 | None:intergenic | 25.0% |
| !!! | TGAAATAGTTATTGGTTTTG+TGG | + | chr4_4:43312601-43312620 | None:intergenic | 25.0% |
| !!! | GTTTGGTTTGAAATAGTTAT+TGG | + | chr4_4:43312609-43312628 | None:intergenic | 25.0% |
| !! | TTAAAGTTGTTTCGTTTCTT+GGG | + | chr4_4:43312657-43312676 | None:intergenic | 25.0% |
| !! | ATTAAAGTTGTTTCGTTTCT+TGG | + | chr4_4:43312658-43312677 | None:intergenic | 25.0% |
| !! | ATTTGAGATCTAGATTGTTA+GGG | + | chr4_4:43313268-43313287 | None:intergenic | 25.0% |
| ! | TTAATGAATGATAGAAAGAG+AGG | - | chr4_4:43313379-43313398 | Msa0682200:CDS | 25.0% |
| ! | TATATATAGGTGAACAAGTT+GGG | - | chr4_4:43313409-43313428 | Msa0682200:intron | 25.0% |
| !!! | TTCGTTCTGTTATGTTTTTT+CGG | - | chr4_4:43313728-43313747 | Msa0682200:intron | 25.0% |
| !!! | CATATGGAAATTGATTTTGA+TGG | - | chr4_4:43313894-43313913 | Msa0682200:intron | 25.0% |
| ! | CATTAGCAGTTAACATTAAA+GGG | + | chr4_4:43313992-43314011 | None:intergenic | 25.0% |
| !! | TTTTTGCAGGAAAAATGAAA+GGG | - | chr4_4:43314086-43314105 | Msa0682200:intron | 25.0% |
| !! | TTACATTTCCAATTGTTTTC+CGG | + | chr4_4:43314159-43314178 | None:intergenic | 25.0% |
| ! | AAAACAATTGGAAATGTAAC+AGG | - | chr4_4:43314160-43314179 | Msa0682200:intron | 25.0% |
| ! | TGTATAAGTAAATAAGGTAC+GGG | + | chr4_4:43314240-43314259 | None:intergenic | 25.0% |
| ! | ATGTTAGAGAATATAATGCA+AGG | + | chr4_4:43314290-43314309 | None:intergenic | 25.0% |
| ! | GCATTATATTCTCTAACATA+AGG | - | chr4_4:43314291-43314310 | Msa0682200:intron | 25.0% |
| ! | ATAAAGACAATCTTACTTCA+GGG | + | chr4_4:43314475-43314494 | None:intergenic | 25.0% |
| ! | AATAAAGACAATCTTACTTC+AGG | + | chr4_4:43314476-43314495 | None:intergenic | 25.0% |
| ! | TTAACTTACTAATGATCCAA+GGG | + | chr4_4:43314515-43314534 | None:intergenic | 25.0% |
| !! | ACTTACGTTTAATCTAAAGT+TGG | - | chr4_4:43314578-43314597 | Msa0682200:intron | 25.0% |
| ! | CATCAAAATAGAAAATCATG+TGG | + | chr4_4:43314607-43314626 | None:intergenic | 25.0% |
| !!! | CACATGATTTTCTATTTTGA+TGG | - | chr4_4:43314605-43314624 | Msa0682200:intron | 25.0% |
| !! | GAGAAATATTGTAGTAGTTT+TGG | + | chr4_4:43314635-43314654 | None:intergenic | 25.0% |
| ! | AAACATGTGCTTATATAAGT+GGG | + | chr4_4:43314737-43314756 | None:intergenic | 25.0% |
| ! | TAAACATGTGCTTATATAAG+TGG | + | chr4_4:43314738-43314757 | None:intergenic | 25.0% |
| ! | ACTTATATAAGCACATGTTT+AGG | - | chr4_4:43314737-43314756 | Msa0682200:intron | 25.0% |
| ! | AACAGAAAAAGTTTATTCTC+TGG | - | chr4_4:43315107-43315126 | Msa0682200:CDS | 25.0% |
| !! | AATATTTTCTGTAACCAAGT+AGG | - | chr4_4:43315164-43315183 | Msa0682200:intron | 25.0% |
| ! | AATTATTCATTCTTCCTTGA+GGG | + | chr4_4:43315731-43315750 | None:intergenic | 25.0% |
| ! | AAATTATTCATTCTTCCTTG+AGG | + | chr4_4:43315732-43315751 | None:intergenic | 25.0% |
| !! | TCTACTATATACTGATTACA+AGG | + | chr4_4:43315813-43315832 | None:intergenic | 25.0% |
| ! | TGGTAAGATTGATATAATCA+TGG | - | chr4_4:43315981-43316000 | Msa0682200:intron | 25.0% |
| !! | ATACAGTCCATTTTATTGAT+TGG | - | chr4_4:43316142-43316161 | Msa0682200:CDS | 25.0% |
| ! | TTGACTCTGTTATATATAGT+TGG | + | chr4_4:43316185-43316204 | None:intergenic | 25.0% |
| ! | TTAGTTGAATTGAGTTCTAT+TGG | + | chr4_4:43316290-43316309 | None:intergenic | 25.0% |
| TTGAAAGAGGTGATTGAATA+GGG | + | chr4_4:43308991-43309010 | None:intergenic | 30.0% | |
| TTTGAAAGAGGTGATTGAAT+AGG | + | chr4_4:43308992-43309011 | None:intergenic | 30.0% | |
| AATGGGATTGAATTTGAAAG+AGG | + | chr4_4:43309004-43309023 | None:intergenic | 30.0% | |
| ATCGATGAAAAGCGATTAAT+TGG | + | chr4_4:43309046-43309065 | None:intergenic | 30.0% | |
| ! | TCGATTTCGATTTTTCTCAA+TGG | - | chr4_4:43309130-43309149 | Msa0682200:intron | 30.0% |
| AGAAGATAAAATGGTCCATT+TGG | - | chr4_4:43309382-43309401 | Msa0682200:intron | 30.0% | |
| ATAAAATGGTCCATTTGGAT+TGG | - | chr4_4:43309387-43309406 | Msa0682200:intron | 30.0% | |
| ! | TAACCACTTGTTAGACTATT+TGG | + | chr4_4:43310033-43310052 | None:intergenic | 30.0% |
| AAAAATCAAGGCTAACTTTG+GGG | + | chr4_4:43310162-43310181 | None:intergenic | 30.0% | |
| AAACGCGAGAATAAAAATCA+AGG | + | chr4_4:43310174-43310193 | None:intergenic | 30.0% | |
| ! | TGATTTTTATTCTCGCGTTT+TGG | - | chr4_4:43310174-43310193 | Msa0682200:intron | 30.0% |
| ! | GATTTTTATTCTCGCGTTTT+GGG | - | chr4_4:43310175-43310194 | Msa0682200:intron | 30.0% |
| ATTCACGAATACTTAACATC+AGG | + | chr4_4:43310279-43310298 | None:intergenic | 30.0% | |
| !! | GTTTAGTTTGCTTAAGAGAT+TGG | - | chr4_4:43310376-43310395 | Msa0682200:intron | 30.0% |
| AAGTTCAGCTTGTACTTTAT+GGG | - | chr4_4:43310413-43310432 | Msa0682200:intron | 30.0% | |
| !! | GTTGCATCTTTTTCTTGTTT+AGG | - | chr4_4:43310836-43310855 | Msa0682200:intron | 30.0% |
| TTGGTAAGTGATATCTCATT+TGG | - | chr4_4:43311081-43311100 | Msa0682200:exon | 30.0% | |
| TTTAATAGCATGTAGAGACT+CGG | - | chr4_4:43311151-43311170 | Msa0682200:CDS | 30.0% | |
| GACTTGTAGATTATGTAGTA+AGG | - | chr4_4:43311202-43311221 | Msa0682200:intron | 30.0% | |
| ! | AGTAAGGAGAGTATATTAGA+TGG | - | chr4_4:43311218-43311237 | Msa0682200:intron | 30.0% |
| AGGTCTATAGATTAATGAGT+TGG | - | chr4_4:43311300-43311319 | Msa0682200:intron | 30.0% | |
| ! | AAGTCTTTTACCATTAAGTG+GGG | + | chr4_4:43311379-43311398 | None:intergenic | 30.0% |
| ! | CAAGTCTTTTACCATTAAGT+GGG | + | chr4_4:43311380-43311399 | None:intergenic | 30.0% |
| ! | TCAAGTCTTTTACCATTAAG+TGG | + | chr4_4:43311381-43311400 | None:intergenic | 30.0% |
| CATATATGAATTGCACGATT+CGG | - | chr4_4:43311566-43311585 | Msa0682200:intron | 30.0% | |
| CTCTTTCCACAGTTATTTAT+TGG | - | chr4_4:43311776-43311795 | Msa0682200:intron | 30.0% | |
| AAATCTTTCACATGCTTTGA+AGG | + | chr4_4:43311908-43311927 | None:intergenic | 30.0% | |
| TAAAAAAAGTTACCATCCTC+TGG | + | chr4_4:43311961-43311980 | None:intergenic | 30.0% | |
| !! | ATATGATTTGTTTGCCTACA+TGG | - | chr4_4:43312088-43312107 | Msa0682200:intron | 30.0% |
| TTTAAGTAGTGTGAAACTTG+AGG | - | chr4_4:43312214-43312233 | Msa0682200:intron | 30.0% | |
| ! | GGAATCTAATTCTAGAAACA+TGG | - | chr4_4:43312239-43312258 | Msa0682200:intron | 30.0% |
| ! | TAGAAACATGGTTTAGAGTT+AGG | - | chr4_4:43312251-43312270 | Msa0682200:intron | 30.0% |
| AGTAAGTGCTCATCATATTA+AGG | - | chr4_4:43312315-43312334 | Msa0682200:intron | 30.0% | |
| !!! | AAAAAACTTTTTCGAAAGCG+TGG | - | chr4_4:43312417-43312436 | Msa0682200:intron | 30.0% |
| GGCACAATAACAATTCAAAT+TGG | - | chr4_4:43312516-43312535 | Msa0682200:intron | 30.0% | |
| ! | TTCTTGTTTAAGGTTAGGTT+TGG | + | chr4_4:43312626-43312645 | None:intergenic | 30.0% |
| ! | GTGATTTCTTGTTTAAGGTT+AGG | + | chr4_4:43312631-43312650 | None:intergenic | 30.0% |
| ! | GGATAGTGATTTCTTGTTTA+AGG | + | chr4_4:43312636-43312655 | None:intergenic | 30.0% |
| CAACAATGTTCTTGACAATT+AGG | - | chr4_4:43312739-43312758 | Msa0682200:intron | 30.0% | |
| AGAGTAAGAAAAAGAGAACA+TGG | - | chr4_4:43312828-43312847 | Msa0682200:intron | 30.0% | |
| AAGAGAACATGGATTTATAG+AGG | - | chr4_4:43312839-43312858 | Msa0682200:intron | 30.0% | |
| CATGGTGATTCATAAATTGA+AGG | + | chr4_4:43312975-43312994 | None:intergenic | 30.0% | |
| TTACATAGTGTAGAAGGTTT+AGG | + | chr4_4:43313000-43313019 | None:intergenic | 30.0% | |
| ATTTCAAAGAGCTTGAAGAT+TGG | + | chr4_4:43313037-43313056 | None:intergenic | 30.0% | |
| !! | ATCTTCAAGCTCTTTGAAAT+TGG | - | chr4_4:43313037-43313056 | Msa0682200:intron | 30.0% |
| TTCTTGGGAAAGAAGATTAA+AGG | + | chr4_4:43313101-43313120 | None:intergenic | 30.0% | |
| CATAGCAAAGAAGATTTCTT+GGG | + | chr4_4:43313116-43313135 | None:intergenic | 30.0% | |
| ACATAGCAAAGAAGATTTCT+TGG | + | chr4_4:43313117-43313136 | None:intergenic | 30.0% | |
| ! | ATTCAAGGATCTAAAGCAAA+AGG | + | chr4_4:43313216-43313235 | None:intergenic | 30.0% |
| CTATAGGATAATTGTAAGCT+TGG | + | chr4_4:43313243-43313262 | None:intergenic | 30.0% | |
| ! | GATTTGAGATCTAGATTGTT+AGG | + | chr4_4:43313269-43313288 | None:intergenic | 30.0% |
| CTATATATAGGTGAACAAGT+TGG | - | chr4_4:43313408-43313427 | Msa0682200:intron | 30.0% | |
| AATTCGAATCAATCTTCATC+TGG | + | chr4_4:43313550-43313569 | None:intergenic | 30.0% | |
| GAAACAATAGACAAACTAAC+CGG | - | chr4_4:43313661-43313680 | Msa0682200:intron | 30.0% | |
| AAACAATAGACAAACTAACC+GGG | - | chr4_4:43313662-43313681 | Msa0682200:intron | 30.0% | |
| !! | TTCTATTAGGGATGTCATTT+TGG | - | chr4_4:43313868-43313887 | Msa0682200:intron | 30.0% |
| !!! | GATGTCATTTTGGTTACATA+TGG | - | chr4_4:43313878-43313897 | Msa0682200:intron | 30.0% |
| CCATTAGCAGTTAACATTAA+AGG | + | chr4_4:43313993-43314012 | None:intergenic | 30.0% | |
| CCTTTAATGTTAACTGCTAA+TGG | - | chr4_4:43313990-43314009 | Msa0682200:intron | 30.0% | |
| ! | GTTTTTGCAGGAAAAATGAA+AGG | - | chr4_4:43314085-43314104 | Msa0682200:intron | 30.0% |
| GAAAGGGATAGCATTTATTA+AGG | - | chr4_4:43314102-43314121 | Msa0682200:intron | 30.0% | |
| ! | ACTGGATTGAAATTTTTGAC+CGG | - | chr4_4:43314137-43314156 | Msa0682200:intron | 30.0% |
| ! | ATTTTTGACCGGAAAACAAT+TGG | - | chr4_4:43314148-43314167 | Msa0682200:intron | 30.0% |
| !! | ATTTTAACATGCAAGTAACC+TGG | + | chr4_4:43314319-43314338 | None:intergenic | 30.0% |
| GATATACATAATTCAGCACA+TGG | + | chr4_4:43314348-43314367 | None:intergenic | 30.0% | |
| ATATCTAAACCAAAGATGCA+AGG | - | chr4_4:43314439-43314458 | Msa0682200:intron | 30.0% | |
| TATCTAAACCAAAGATGCAA+GGG | - | chr4_4:43314440-43314459 | Msa0682200:intron | 30.0% | |
| GTTAACTTACTAATGATCCA+AGG | + | chr4_4:43314516-43314535 | None:intergenic | 30.0% | |
| GTACTTTGTTAGATTAAGGA+TGG | - | chr4_4:43314544-43314563 | Msa0682200:intron | 30.0% | |
| !!! | ATCTTTCAAGATGGTTTTGT+AGG | + | chr4_4:43314704-43314723 | None:intergenic | 30.0% |
| AACATGTGCTTATATAAGTG+GGG | + | chr4_4:43314736-43314755 | None:intergenic | 30.0% | |
| CTAACTCAAAACTACAAAAC+CGG | - | chr4_4:43314910-43314929 | Msa0682200:intron | 30.0% | |
| TCCCAAACTAACAGAAATTA+CGG | - | chr4_4:43315305-43315324 | Msa0682200:intron | 30.0% | |
| ATGTAAGGAAATGTTTATGC+TGG | + | chr4_4:43315447-43315466 | None:intergenic | 30.0% | |
| AAAACACAGTTCACACAAAA+AGG | + | chr4_4:43315873-43315892 | None:intergenic | 30.0% | |
| !!! | ATTTGTTTTGACAATGCATC+CGG | - | chr4_4:43315938-43315957 | Msa0682200:intron | 30.0% |
| !! | GAAGTTTTATAGAATGACAG+TGG | - | chr4_4:43316038-43316057 | Msa0682200:intron | 30.0% |
| CTCTCATCTTCAAAATCACA+AGG | - | chr4_4:43308861-43308880 | Msa0682200:three_prime_UTR | 35.0% | |
| AAAAATCGAAATCGACGAGT+CGG | + | chr4_4:43309125-43309144 | None:intergenic | 35.0% | |
| ! | ATTTTTCTCAATGGCTGCTT+CGG | - | chr4_4:43309139-43309158 | Msa0682200:intron | 35.0% |
| AATTCCACTTACTGCATGTT+TGG | - | chr4_4:43309282-43309301 | Msa0682200:intron | 35.0% | |
| TAATCCAAACATGCAGTAAG+TGG | + | chr4_4:43309289-43309308 | None:intergenic | 35.0% | |
| TAGACTATTTGGTCGAGTAA+TGG | + | chr4_4:43310022-43310041 | None:intergenic | 35.0% | |
| ! | GAAAGCTAACGACAATTTTG+TGG | - | chr4_4:43310350-43310369 | Msa0682200:intron | 35.0% |
| GAAGTTCAGCTTGTACTTTA+TGG | - | chr4_4:43310412-43310431 | Msa0682200:intron | 35.0% | |
| AGTTCAGCTTGTACTTTATG+GGG | - | chr4_4:43310414-43310433 | Msa0682200:intron | 35.0% | |
| !! | AGTTTTGTGAAGCAAGTTAC+TGG | - | chr4_4:43310483-43310502 | Msa0682200:intron | 35.0% |
| ACGATTGAATTGACACAGTA+AGG | - | chr4_4:43310921-43310940 | Msa0682200:intron | 35.0% | |
| AAAGTGATCCAGAGTTCAAA+GGG | - | chr4_4:43311027-43311046 | Msa0682200:intron | 35.0% | |
| ! | AGGAGAGTATATTAGATGGA+TGG | - | chr4_4:43311222-43311241 | Msa0682200:intron | 35.0% |
| AGAGTATATTAGATGGATGG+AGG | - | chr4_4:43311225-43311244 | Msa0682200:intron | 35.0% | |
| GAGTATATTAGATGGATGGA+GGG | - | chr4_4:43311226-43311245 | Msa0682200:intron | 35.0% | |
| GTATCATGATTCAGATCTCA+CGG | - | chr4_4:43311443-43311462 | Msa0682200:intron | 35.0% | |
| CGAATCGTGCAATTCATATA+TGG | + | chr4_4:43311568-43311587 | None:intergenic | 35.0% | |
| ! | AAAAAAGTACATCCACGTGA+AGG | + | chr4_4:43311756-43311775 | None:intergenic | 35.0% |
| ATTACCTTATTGGGATAGCT+AGG | - | chr4_4:43311816-43311835 | Msa0682200:intron | 35.0% | |
| ATGTGAAAGATTTCAGAACC+TGG | - | chr4_4:43311915-43311934 | Msa0682200:intron | 35.0% | |
| TGTGAAAGATTTCAGAACCT+GGG | - | chr4_4:43311916-43311935 | Msa0682200:intron | 35.0% | |
| !! | TGAGTTTGTTAAGAAACCAG+AGG | - | chr4_4:43311942-43311961 | Msa0682200:intron | 35.0% |
| TTTGTTAAGAAACCAGAGGA+TGG | - | chr4_4:43311946-43311965 | Msa0682200:intron | 35.0% | |
| ! | AAATGGATTTCATCATGTGG+AGG | + | chr4_4:43312148-43312167 | None:intergenic | 35.0% |
| ! | AAACATGGTTTAGAGTTAGG+AGG | - | chr4_4:43312254-43312273 | Msa0682200:intron | 35.0% |
| !!! | GAGTTAGGAGGTATGTTTTT+TGG | - | chr4_4:43312266-43312285 | Msa0682200:intron | 35.0% |
| ! | TATCGTTGCTTTCGTCATAT+CGG | + | chr4_4:43312363-43312382 | None:intergenic | 35.0% |
| TAACAATTCAAATTGGACCG+AGG | - | chr4_4:43312523-43312542 | Msa0682200:intron | 35.0% | |
| TGTAAGCTTGGTTTCATTCA+AGG | + | chr4_4:43313231-43313250 | None:intergenic | 35.0% | |
| ATCTAGATCTCAAATCCCAT+AGG | - | chr4_4:43313273-43313292 | Msa0682200:intron | 35.0% | |
| ! | CTCTTTCTAAGAACACCTAT+GGG | + | chr4_4:43313291-43313310 | None:intergenic | 35.0% |
| ! | ACTCTTTCTAAGAACACCTA+TGG | + | chr4_4:43313292-43313311 | None:intergenic | 35.0% |
| ATGAATGATAGAAAGAGAGG+AGG | - | chr4_4:43313382-43313401 | Msa0682200:CDS | 35.0% | |
| GAGAGGAGGAAACTATATAT+AGG | - | chr4_4:43313396-43313415 | Msa0682200:intron | 35.0% | |
| ACACTGACGATTCAAATCAA+AGG | + | chr4_4:43313458-43313477 | None:intergenic | 35.0% | |
| !! | TATGAACACCGATTCAAATC+AGG | - | chr4_4:43313519-43313538 | Msa0682200:intron | 35.0% |
| !! | ATGAACACCGATTCAAATCA+GGG | - | chr4_4:43313520-43313539 | Msa0682200:intron | 35.0% |
| ! | TGGAAATCCCTGATTTGAAT+CGG | + | chr4_4:43313530-43313549 | None:intergenic | 35.0% |
| ! | CTGTTAGTTTATAAAGCACC+CGG | + | chr4_4:43313683-43313702 | None:intergenic | 35.0% |
| GGGTGCTTTATAAACTAACA+GGG | - | chr4_4:43313682-43313701 | Msa0682200:intron | 35.0% | |
| GGTGCTTTATAAACTAACAG+GGG | - | chr4_4:43313683-43313702 | Msa0682200:intron | 35.0% | |
| GTGCTTTATAAACTAACAGG+GGG | - | chr4_4:43313684-43313703 | Msa0682200:intron | 35.0% | |
| TTTCGGTTCTACTCTGTTTA+TGG | - | chr4_4:43313745-43313764 | Msa0682200:intron | 35.0% | |
| ACAGAGAAGAACAGAACAAT+TGG | + | chr4_4:43313795-43313814 | None:intergenic | 35.0% | |
| TTCTGCTTGATCTGTACTTT+AGG | - | chr4_4:43313820-43313839 | Msa0682200:intron | 35.0% | |
| ! | AAGACTTAAGTTTGAAGCAC+AGG | + | chr4_4:43314055-43314074 | None:intergenic | 35.0% |
| GCATTTATTAAGGATCCTGA+TGG | - | chr4_4:43314112-43314131 | Msa0682200:intron | 35.0% | |
| ATTTCAATCCAGTATCCATC+AGG | + | chr4_4:43314130-43314149 | None:intergenic | 35.0% | |
| TAAGATAAACAAACCCCTTC+AGG | - | chr4_4:43314193-43314212 | Msa0682200:intron | 35.0% | |
| AGTAAATAAGGTACGGGAAT+TGG | + | chr4_4:43314234-43314253 | None:intergenic | 35.0% | |
| CAAGGAAAACATTACACTCA+GGG | + | chr4_4:43314272-43314291 | None:intergenic | 35.0% | |
| ATTCTCTAACATAAGGAACC+AGG | - | chr4_4:43314298-43314317 | Msa0682200:intron | 35.0% | |
| ATCTAAACCAAAGATGCAAG+GGG | - | chr4_4:43314441-43314460 | Msa0682200:intron | 35.0% | |
| ACAGTAAGCTGATTAGAACT+AGG | - | chr4_4:43314662-43314681 | Msa0682200:intron | 35.0% | |
| CAGTAAGCTGATTAGAACTA+GGG | - | chr4_4:43314663-43314682 | Msa0682200:intron | 35.0% | |
| !!! | ATGGTTTTGTAGGATAAGGT+GGG | + | chr4_4:43314694-43314713 | None:intergenic | 35.0% |
| !!! | CAAGATGGTTTTGTAGGATA+AGG | + | chr4_4:43314698-43314717 | None:intergenic | 35.0% |
| CAAAACCATCTTGAAAGATG+AGG | - | chr4_4:43314705-43314724 | Msa0682200:intron | 35.0% | |
| ACATGTGCTTATATAAGTGG+GGG | + | chr4_4:43314735-43314754 | None:intergenic | 35.0% | |
| TCCTATTAGGTTACCGTTAT+CGG | + | chr4_4:43314834-43314853 | None:intergenic | 35.0% | |
| ATCAAAGCCTATTCATGATC+CGG | + | chr4_4:43314866-43314885 | None:intergenic | 35.0% | |
| !!! | CGGTTTTGTAGTTTTGAGTT+AGG | + | chr4_4:43314912-43314931 | None:intergenic | 35.0% |
| CCTCAATAGGTGTTTATAAG+TGG | + | chr4_4:43314954-43314973 | None:intergenic | 35.0% | |
| CCACTTATAAACACCTATTG+AGG | - | chr4_4:43314951-43314970 | Msa0682200:intron | 35.0% | |
| GAATGAGATAAGACCTCAAT+AGG | + | chr4_4:43314967-43314986 | None:intergenic | 35.0% | |
| GTTTGTCAAGAGTCTCAAAT+TGG | + | chr4_4:43314993-43315012 | None:intergenic | 35.0% | |
| ATCATTCTCTTGCACATACA+AGG | + | chr4_4:43315020-43315039 | None:intergenic | 35.0% | |
| ! | CCCGTAATTTCTGTTAGTTT+GGG | + | chr4_4:43315309-43315328 | None:intergenic | 35.0% |
| CCCAAACTAACAGAAATTAC+GGG | - | chr4_4:43315306-43315325 | Msa0682200:intron | 35.0% | |
| ACCCGTAATTTCTGTTAGTT+TGG | + | chr4_4:43315310-43315329 | None:intergenic | 35.0% | |
| CATCTCGTTGCAGATATAAT+CGG | - | chr4_4:43315648-43315667 | Msa0682200:intron | 35.0% | |
| ATCTCGTTGCAGATATAATC+GGG | - | chr4_4:43315649-43315668 | Msa0682200:intron | 35.0% | |
| ACTACTTGCTTTGTAAGTCT+TGG | - | chr4_4:43315692-43315711 | Msa0682200:intron | 35.0% | |
| TTAAGAGTTGTCAAAGCGTA+AGG | + | chr4_4:43315902-43315921 | None:intergenic | 35.0% | |
| GGATGCATTGTCAAAACAAA+TGG | + | chr4_4:43315939-43315958 | None:intergenic | 35.0% | |
| TTAGTGCATGTTTGGATTGA+TGG | - | chr4_4:43315961-43315980 | Msa0682200:intron | 35.0% | |
| CAAGATATTGAGTGCATGTT+TGG | + | chr4_4:43316083-43316102 | None:intergenic | 35.0% | |
| CAAACATGCACTCAATATCT+TGG | - | chr4_4:43316081-43316100 | Msa0682200:CDS | 35.0% | |
| !! | TTGTCACGTTTGGATTAGTT+TGG | + | chr4_4:43316231-43316250 | None:intergenic | 35.0% |
| GAATTGAGTTCTATTGGACT+GGG | + | chr4_4:43316284-43316303 | None:intergenic | 35.0% | |
| TGAATTGAGTTCTATTGGAC+TGG | + | chr4_4:43316285-43316304 | None:intergenic | 35.0% | |
| GCGATTAATTGGAACCTTGA+GGG | + | chr4_4:43309035-43309054 | None:intergenic | 40.0% | |
| AGCGATTAATTGGAACCTTG+AGG | + | chr4_4:43309036-43309055 | None:intergenic | 40.0% | |
| TTCGGAATCAAAGGAATCAC+CGG | - | chr4_4:43309157-43309176 | Msa0682200:intron | 40.0% | |
| AACCGTAGATGAAGCTACTA+AGG | - | chr4_4:43309202-43309221 | Msa0682200:intron | 40.0% | |
| ACCGTAGATGAAGCTACTAA+GGG | - | chr4_4:43309203-43309222 | Msa0682200:intron | 40.0% | |
| ACCCTTAGTAGCTTCATCTA+CGG | + | chr4_4:43309207-43309226 | None:intergenic | 40.0% | |
| CGACCAAATAGTCTAACAAG+TGG | - | chr4_4:43310027-43310046 | Msa0682200:intron | 40.0% | |
| TACAAGCTGAACTTCATCTC+AGG | + | chr4_4:43310407-43310426 | None:intergenic | 40.0% | |
| CTTGTACTTTATGGGGTATG+AGG | - | chr4_4:43310421-43310440 | Msa0682200:intron | 40.0% | |
| ACTTTATGGGGTATGAGGTA+TGG | - | chr4_4:43310426-43310445 | Msa0682200:intron | 40.0% | |
| TATTGCCAATCCAACGCATA+TGG | + | chr4_4:43310527-43310546 | None:intergenic | 40.0% | |
| AATTCTTAAATTGTGCCCCG+AGG | - | chr4_4:43310684-43310703 | Msa0682200:intron | 40.0% | |
| ATTCTTAAATTGTGCCCCGA+GGG | - | chr4_4:43310685-43310704 | Msa0682200:intron | 40.0% | |
| ! | ATCTGAAGCTCCAAGTAACT+CGG | - | chr4_4:43310863-43310882 | Msa0682200:intron | 40.0% |
| GTTCTATCAACCGAGTTACT+TGG | + | chr4_4:43310876-43310895 | None:intergenic | 40.0% | |
| !! | ACTCGGTTGATAGAACAGTT+TGG | - | chr4_4:43310880-43310899 | Msa0682200:intron | 40.0% |
| AGTTTGGACCTTTGCTCAAA+AGG | - | chr4_4:43310896-43310915 | Msa0682200:intron | 40.0% | |
| ! | AATCGTAGCCTTTTGAGCAA+AGG | + | chr4_4:43310907-43310926 | None:intergenic | 40.0% |
| GAAAGTGATCCAGAGTTCAA+AGG | - | chr4_4:43311026-43311045 | Msa0682200:intron | 40.0% | |
| TTGTGATACCCTTTGAACTC+TGG | + | chr4_4:43311038-43311057 | None:intergenic | 40.0% | |
| !! | GAGTTCAAAGGGTATCACAA+TGG | - | chr4_4:43311038-43311057 | Msa0682200:intron | 40.0% |
| ! | AATTCTGATCCTCGTGGTTT+TGG | - | chr4_4:43311062-43311081 | Msa0682200:intron | 40.0% |
| TATCACTTACCAAAACCACG+AGG | + | chr4_4:43311074-43311093 | None:intergenic | 40.0% | |
| ATATAGCTGACCCCACTTAA+TGG | - | chr4_4:43311366-43311385 | Msa0682200:intron | 40.0% | |
| ! | ATATGAATTGCACGATTCGG+CGG | - | chr4_4:43311569-43311588 | Msa0682200:intron | 40.0% |
| ACTAGGTCACCAGAGTAAAA+TGG | + | chr4_4:43311654-43311673 | None:intergenic | 40.0% | |
| TTAGTTTCATGTCCTTCACG+TGG | - | chr4_4:43311741-43311760 | Msa0682200:intron | 40.0% | |
| CTAGGCGACTGAATTCTAAT+AGG | - | chr4_4:43311834-43311853 | Msa0682200:intron | 40.0% | |
| CAATGTGTCCTGTAAACGTA+AGG | + | chr4_4:43311867-43311886 | None:intergenic | 40.0% | |
| CTTACGTTTACAGGACACAT+TGG | - | chr4_4:43311865-43311884 | Msa0682200:intron | 40.0% | |
| TCTTAACAAACTCAACTCCC+AGG | + | chr4_4:43311936-43311955 | None:intergenic | 40.0% | |
| ATATGGATGCTTTGTGTGTG+AGG | - | chr4_4:43312041-43312060 | Msa0682200:intron | 40.0% | |
| AACATAACAGATGGCCATGT+AGG | + | chr4_4:43312105-43312124 | None:intergenic | 40.0% | |
| AGTAGTGTGAAACTTGAGGA+TGG | - | chr4_4:43312218-43312237 | Msa0682200:intron | 40.0% | |
| ACAACTTATGCGAGCACTTA+TGG | - | chr4_4:43312292-43312311 | Msa0682200:intron | 40.0% | |
| GCTTATGTATCAGCTACTGT+TGG | - | chr4_4:43312337-43312356 | Msa0682200:intron | 40.0% | |
| ACGAAAGCAACGATAAGCTA+AGG | - | chr4_4:43312368-43312387 | Msa0682200:intron | 40.0% | |
| CGAAAGCAACGATAAGCTAA+GGG | - | chr4_4:43312369-43312388 | Msa0682200:intron | 40.0% | |
| GAAAGCAACGATAAGCTAAG+GGG | - | chr4_4:43312370-43312389 | Msa0682200:intron | 40.0% | |
| AAAGCAACGATAAGCTAAGG+GGG | - | chr4_4:43312371-43312390 | Msa0682200:intron | 40.0% | |
| AGAAGAAAACGCCTCTTCTA+CGG | - | chr4_4:43312902-43312921 | Msa0682200:intron | 40.0% | |
| CTAGTATTAGTCCGTAGAAG+AGG | + | chr4_4:43312916-43312935 | None:intergenic | 40.0% | |
| ! | CTCTTCTACGGACTAATACT+AGG | - | chr4_4:43312914-43312933 | Msa0682200:intron | 40.0% |
| ! | GTGTAGAAGGTTTAGGATCA+TGG | + | chr4_4:43312993-43313012 | None:intergenic | 40.0% |
| GAGTGGTTACATAGTGTAGA+AGG | + | chr4_4:43313006-43313025 | None:intergenic | 40.0% | |
| TCAAAGAGCTTGAAGATTGG+AGG | + | chr4_4:43313034-43313053 | None:intergenic | 40.0% | |
| TTGAAATTGGATGAATCCCG+AGG | - | chr4_4:43313050-43313069 | Msa0682200:intron | 40.0% | |
| CCAAACAATTGAGGTTGAAG+GGG | + | chr4_4:43313152-43313171 | None:intergenic | 40.0% | |
| CCCAAACAATTGAGGTTGAA+GGG | + | chr4_4:43313153-43313172 | None:intergenic | 40.0% | |
| CCCTTCAACCTCAATTGTTT+GGG | - | chr4_4:43313150-43313169 | Msa0682200:intron | 40.0% | |
| TCCCAAACAATTGAGGTTGA+AGG | + | chr4_4:43313154-43313173 | None:intergenic | 40.0% | |
| ! | GGTTGTTTCCCAAACAATTG+AGG | + | chr4_4:43313161-43313180 | None:intergenic | 40.0% |
| TCACCTCCAAAGGTAATTGT+GGG | + | chr4_4:43313184-43313203 | None:intergenic | 40.0% | |
| TTCACCTCCAAAGGTAATTG+TGG | + | chr4_4:43313185-43313204 | None:intergenic | 40.0% | |
| ! | CTAGATTGTTAGGGTGCTAT+AGG | + | chr4_4:43313259-43313278 | None:intergenic | 40.0% |
| ATTCGAATCCATCTCCTTAC+AGG | - | chr4_4:43313582-43313601 | Msa0682200:intron | 40.0% | |
| CGGGTGCTTTATAAACTAAC+AGG | - | chr4_4:43313681-43313700 | Msa0682200:intron | 40.0% | |
| TAAATTCTGCTGATGCCATC+AGG | - | chr4_4:43314021-43314040 | Msa0682200:intron | 40.0% | |
| ! | ACTTAAGTTTGAAGCACAGG+TGG | + | chr4_4:43314052-43314071 | None:intergenic | 40.0% |
| ! | TTAAGGATCCTGATGGATAC+TGG | - | chr4_4:43314119-43314138 | Msa0682200:intron | 40.0% |
| AACTACAGTCTCTACCTGAA+GGG | + | chr4_4:43314210-43314229 | None:intergenic | 40.0% | |
| AAACTACAGTCTCTACCTGA+AGG | + | chr4_4:43314211-43314230 | None:intergenic | 40.0% | |
| GCAAGGAAAACATTACACTC+AGG | + | chr4_4:43314273-43314292 | None:intergenic | 40.0% | |
| ! | GGAGAAAGAGCGATTTTACA+TGG | + | chr4_4:43314370-43314389 | None:intergenic | 40.0% |
| !!! | GATGGTTTTGTAGGATAAGG+TGG | + | chr4_4:43314695-43314714 | None:intergenic | 40.0% |
| TGTGTTAAGAGGTCTCACAT+TGG | + | chr4_4:43314774-43314793 | None:intergenic | 40.0% | |
| CCTATTAGGTTACCGTTATC+GGG | + | chr4_4:43314833-43314852 | None:intergenic | 40.0% | |
| ! | GATAACGGTAACCTAATAGG+AGG | - | chr4_4:43314833-43314852 | Msa0682200:intron | 40.0% |
| !! | AACTACAAAACCGGCTTGTA+AGG | - | chr4_4:43314919-43314938 | Msa0682200:intron | 40.0% |
| TCTCTTGCACATACAAGGTA+AGG | + | chr4_4:43315015-43315034 | None:intergenic | 40.0% | |
| CGAACTTGTGATGTATTCAC+AGG | - | chr4_4:43315050-43315069 | Msa0682200:intron | 40.0% | |
| AACTCGCCAATGGTTAATTC+TGG | + | chr4_4:43315076-43315095 | None:intergenic | 40.0% | |
| GACATTCCAGCTAGAAAGAA+TGG | + | chr4_4:43315197-43315216 | None:intergenic | 40.0% | |
| ACTAACAGAAATTACGGGTG+AGG | - | chr4_4:43315311-43315330 | Msa0682200:intron | 40.0% | |
| ! | TGATGATGCGCACATATGTA+AGG | + | chr4_4:43315462-43315481 | None:intergenic | 40.0% |
| AAGCAAGTAGTCAAGCACAT+TGG | + | chr4_4:43315683-43315702 | None:intergenic | 40.0% | |
| GTAGTCGAAGCAGAATGTTA+AGG | - | chr4_4:43315752-43315771 | Msa0682200:intron | 40.0% | |
| CAATCCAAACATGCACTAAC+CGG | + | chr4_4:43315960-43315979 | None:intergenic | 40.0% | |
| !!! | TGCTTTGGTTTTGTCACGTT+TGG | + | chr4_4:43316241-43316260 | None:intergenic | 40.0% |
| !! | TGGTATGGAATGGTTTGCTT+TGG | + | chr4_4:43316256-43316275 | None:intergenic | 40.0% |
| ! | TTCTATTGGACTGGGTACAT+TGG | + | chr4_4:43316276-43316295 | None:intergenic | 40.0% |
| CGATGAAGCGAAAACGAGAA+AGG | + | chr4_4:43308952-43308971 | None:intergenic | 45.0% | |
| !! | AATAGGGAGAGGTTGGTGTT+TGG | + | chr4_4:43308975-43308994 | None:intergenic | 45.0% |
| GTGATTGAATAGGGAGAGGT+TGG | + | chr4_4:43308982-43309001 | None:intergenic | 45.0% | |
| AGAGGTGATTGAATAGGGAG+AGG | + | chr4_4:43308986-43309005 | None:intergenic | 45.0% | |
| CCTTGAGGGAGAAATGGAAT+GGG | + | chr4_4:43309021-43309040 | None:intergenic | 45.0% | |
| ACCTTGAGGGAGAAATGGAA+TGG | + | chr4_4:43309022-43309041 | None:intergenic | 45.0% | |
| TTGGAACCTTGAGGGAGAAA+TGG | + | chr4_4:43309027-43309046 | None:intergenic | 45.0% | |
| AATGGCTGCTTCGGAATCAA+AGG | - | chr4_4:43309148-43309167 | Msa0682200:intron | 45.0% | |
| TAGCTTCATCTACGGTTGCA+TGG | + | chr4_4:43309199-43309218 | None:intergenic | 45.0% | |
| TAGCTATCTACGGATGCTTG+TGG | - | chr4_4:43309647-43309666 | Msa0682200:intron | 45.0% | |
| TATGCATGAGCCATATGCGT+TGG | - | chr4_4:43310514-43310533 | Msa0682200:intron | 45.0% | |
| ATGAGCCATATGCGTTGGAT+TGG | - | chr4_4:43310519-43310538 | Msa0682200:intron | 45.0% | |
| GAAATGTTAACGAGTGCCCT+CGG | - | chr4_4:43310557-43310576 | Msa0682200:intron | 45.0% | |
| AAATGTTAACGAGTGCCCTC+GGG | - | chr4_4:43310558-43310577 | Msa0682200:intron | 45.0% | |
| GGTCTTAAAAAATGCCCCGA+GGG | + | chr4_4:43310576-43310595 | None:intergenic | 45.0% | |
| AGGTCTTAAAAAATGCCCCG+AGG | + | chr4_4:43310577-43310596 | None:intergenic | 45.0% | |
| TCTTGTTAACAAGTGCCCTC+GGG | + | chr4_4:43310703-43310722 | None:intergenic | 45.0% | |
| ! | GTCTTGTTAACAAGTGCCCT+CGG | + | chr4_4:43310704-43310723 | None:intergenic | 45.0% |
| AATGGCAATTCTGATCCTCG+TGG | - | chr4_4:43311056-43311075 | Msa0682200:intron | 45.0% | |
| GAAGTCGTCCTTACGTTTAC+AGG | - | chr4_4:43311856-43311875 | Msa0682200:intron | 45.0% | |
| GGATTTCATCATGTGGAGGA+GGG | + | chr4_4:43312144-43312163 | None:intergenic | 45.0% | |
| TGGATTTCATCATGTGGAGG+AGG | + | chr4_4:43312145-43312164 | None:intergenic | 45.0% | |
| CAGCTGAAGAGTGAATTCCT+CGG | + | chr4_4:43312543-43312562 | None:intergenic | 45.0% | |
| ! | AGCTTGAAGATTGGAGGCAT+TGG | + | chr4_4:43313028-43313047 | None:intergenic | 45.0% |
| CCCCTTCAACCTCAATTGTT+TGG | - | chr4_4:43313149-43313168 | Msa0682200:intron | 45.0% | |
| ACAACCCCCACAATTACCTT+TGG | - | chr4_4:43313175-43313194 | Msa0682200:intron | 45.0% | |
| ACCTCCAAAGGTAATTGTGG+GGG | + | chr4_4:43313182-43313201 | None:intergenic | 45.0% | |
| CACCTCCAAAGGTAATTGTG+GGG | + | chr4_4:43313183-43313202 | None:intergenic | 45.0% | |
| !!! | GAGCTACTTTTCACCTCCAA+AGG | + | chr4_4:43313194-43313213 | None:intergenic | 45.0% |
| TTCGAATCATTCATCCCCTC+AGG | + | chr4_4:43313612-43313631 | None:intergenic | 45.0% | |
| ACTACAGTCTCTACCTGAAG+GGG | + | chr4_4:43314209-43314228 | None:intergenic | 45.0% | |
| GAACAAGTTGTGTAAGCCCT+TGG | - | chr4_4:43314496-43314515 | Msa0682200:intron | 45.0% | |
| GCAGTCCTCATCTTTCAAGA+TGG | + | chr4_4:43314713-43314732 | None:intergenic | 45.0% | |
| GTCTCACATTGGATGAGAAC+GGG | + | chr4_4:43314763-43314782 | None:intergenic | 45.0% | |
| GGTCTCACATTGGATGAGAA+CGG | + | chr4_4:43314764-43314783 | None:intergenic | 45.0% | |
| GTTCAAATCTGGTCGTGAGA+GGG | + | chr4_4:43314797-43314816 | None:intergenic | 45.0% | |
| TGTTCAAATCTGGTCGTGAG+AGG | + | chr4_4:43314798-43314817 | None:intergenic | 45.0% | |
| CACGACCAGATTTGAACATC+TGG | - | chr4_4:43314800-43314819 | Msa0682200:intron | 45.0% | |
| ACGCTCCAGATGTTCAAATC+TGG | + | chr4_4:43314808-43314827 | None:intergenic | 45.0% | |
| ! | CCCGATAACGGTAACCTAAT+AGG | - | chr4_4:43314830-43314849 | Msa0682200:intron | 45.0% |
| AACGGTAACCTAATAGGAGG+TGG | - | chr4_4:43314836-43314855 | Msa0682200:intron | 45.0% | |
| AAGCCTATTCATGATCCGGT+GGG | + | chr4_4:43314862-43314881 | None:intergenic | 45.0% | |
| AAAGCCTATTCATGATCCGG+TGG | + | chr4_4:43314863-43314882 | None:intergenic | 45.0% | |
| CACAGGCCAGAATTAACCAT+TGG | - | chr4_4:43315067-43315086 | Msa0682200:intron | 45.0% | |
| CCTTGTAAGAAACTCGCCAA+TGG | + | chr4_4:43315086-43315105 | None:intergenic | 45.0% | |
| CCATTGGCGAGTTTCTTACA+AGG | - | chr4_4:43315083-43315102 | Msa0682200:intron | 45.0% | |
| ! | AGAATGGACTCACTCCTACT+TGG | + | chr4_4:43315181-43315200 | None:intergenic | 45.0% |
| ! | GTGAGTCCATTCTTTCTAGC+TGG | - | chr4_4:43315188-43315207 | Msa0682200:intron | 45.0% |
| GTACTTCTTCAACTCCCTCA+AGG | - | chr4_4:43315714-43315733 | Msa0682200:intron | 45.0% | |
| TGACTGTGTCTGCAGTCAAT+TGG | - | chr4_4:43315836-43315855 | Msa0682200:intron | 45.0% | |
| CTGGGTACATTGGTATGGAA+TGG | + | chr4_4:43316266-43316285 | None:intergenic | 45.0% | |
| ! | TTGGACTGGGTACATTGGTA+TGG | + | chr4_4:43316271-43316290 | None:intergenic | 45.0% |
| !!! | ATTTTTATTTATAAATGATA+TGG | - | chr4_4:43312024-43312043 | Msa0682200:intron | 5.0% |
| CCCATTCCATTTCTCCCTCA+AGG | - | chr4_4:43309018-43309037 | Msa0682200:intron | 50.0% | |
| TGGGGTATGAGGTATGGCTA+TGG | - | chr4_4:43310432-43310451 | Msa0682200:intron | 50.0% | |
| AATGTTAACGAGTGCCCTCG+GGG | - | chr4_4:43310559-43310578 | Msa0682200:intron | 50.0% | |
| CTTGTTAACAAGTGCCCTCG+GGG | + | chr4_4:43310702-43310721 | None:intergenic | 50.0% | |
| AGCATGTAGAGACTCGGCTT+AGG | - | chr4_4:43311157-43311176 | Msa0682200:CDS | 50.0% | |
| ATGTAGAGACTCGGCTTAGG+TGG | - | chr4_4:43311160-43311179 | Msa0682200:CDS | 50.0% | |
| AGACTCGGCTTAGGTGGTTT+GGG | - | chr4_4:43311166-43311185 | Msa0682200:CDS | 50.0% | |
| GTCGCCTAGCTATCCCAATA+AGG | + | chr4_4:43311823-43311842 | None:intergenic | 50.0% | |
| TTCCCATATCGTCCTCGCTA+AGG | - | chr4_4:43312862-43312881 | Msa0682200:intron | 50.0% | |
| TCCCATATCGTCCTCGCTAA+GGG | - | chr4_4:43312863-43312882 | Msa0682200:intron | 50.0% | |
| ACCCTTAGCGAGGACGATAT+GGG | + | chr4_4:43312867-43312886 | None:intergenic | 50.0% | |
| TACCCTTAGCGAGGACGATA+TGG | + | chr4_4:43312868-43312887 | None:intergenic | 50.0% | |
| GAGAAGATGTACCCTTAGCG+AGG | + | chr4_4:43312877-43312896 | None:intergenic | 50.0% | |
| !! | GAAGATTGGAGGCATTGGAG+TGG | + | chr4_4:43313023-43313042 | None:intergenic | 50.0% |
| ! | TGGATGAATCCCGAGGTGTT+CGG | - | chr4_4:43313057-43313076 | Msa0682200:intron | 50.0% |
| TAGCTTGATCCGAACACCTC+GGG | + | chr4_4:43313069-43313088 | None:intergenic | 50.0% | |
| CTAGCTTGATCCGAACACCT+CGG | + | chr4_4:43313070-43313089 | None:intergenic | 50.0% | |
| ACCCCCACAATTACCTTTGG+AGG | - | chr4_4:43313178-43313197 | Msa0682200:intron | 50.0% | |
| CAGGTTGTCCTGTAAGGAGA+TGG | + | chr4_4:43313593-43313612 | None:intergenic | 50.0% | |
| TCTCCTTACAGGACAACCTG+AGG | - | chr4_4:43313593-43313612 | Msa0682200:intron | 50.0% | |
| CTCCTTACAGGACAACCTGA+GGG | - | chr4_4:43313594-43313613 | Msa0682200:intron | 50.0% | |
| TCCTTACAGGACAACCTGAG+GGG | - | chr4_4:43313595-43313614 | Msa0682200:intron | 50.0% | |
| ! | AGTTTGAAGCACAGGTGGTG+CGG | + | chr4_4:43314047-43314066 | None:intergenic | 50.0% |
| ! | TCGTGAGAGGGTGTGTTAAG+AGG | + | chr4_4:43314785-43314804 | None:intergenic | 50.0% |
| !! | AAAACCGGCTTGTAAGGCGA+GGG | - | chr4_4:43314925-43314944 | Msa0682200:intron | 50.0% |
| GCATCCGGTTAGTGCATGTT+TGG | - | chr4_4:43315953-43315972 | Msa0682200:intron | 50.0% | |
| ! | GAATCACCGGCTAACAACCC+TGG | - | chr4_4:43309170-43309189 | Msa0682200:intron | 55.0% |
| TGGAGACCAGGGTTGTTAGC+CGG | + | chr4_4:43309179-43309198 | None:intergenic | 55.0% | |
| CTACGGTTGCATGGAGACCA+GGG | + | chr4_4:43309190-43309209 | None:intergenic | 55.0% | |
| TCTACGGTTGCATGGAGACC+AGG | + | chr4_4:43309191-43309210 | None:intergenic | 55.0% | |
| GAGACTCGGCTTAGGTGGTT+TGG | - | chr4_4:43311165-43311184 | Msa0682200:CDS | 55.0% | |
| GGTTGAAGGGGATCGAAGTG+AGG | + | chr4_4:43313140-43313159 | None:intergenic | 55.0% | |
| ! | TCCCCTCAGGTTGTCCTGTA+AGG | + | chr4_4:43313599-43313618 | None:intergenic | 55.0% |
| GCTTGCTCCCCTTGCATCTT+TGG | + | chr4_4:43314451-43314470 | None:intergenic | 55.0% | |
| ! | TCTGGAGCGTGACCCGATAA+CGG | - | chr4_4:43314818-43314837 | Msa0682200:intron | 55.0% |
| TGGCCCACCGGATCATGAAT+AGG | - | chr4_4:43314856-43314875 | Msa0682200:CDS | 55.0% | |
| !! | CAAAACCGGCTTGTAAGGCG+AGG | - | chr4_4:43314924-43314943 | Msa0682200:intron | 55.0% |
| CCTAATAGGAGGTGGCCCAC+CGG | - | chr4_4:43314844-43314863 | Msa0682200:intron | 60.0% | |
| GAGACCCTCGCCTTACAAGC+CGG | + | chr4_4:43314932-43314951 | None:intergenic | 60.0% | |
| CCGGTGGGCCACCTCCTATT+AGG | + | chr4_4:43314847-43314866 | None:intergenic | 65.0% | |
| GCACAGGTGGTGCGGCCTGA+TGG | + | chr4_4:43314039-43314058 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 43308860 | 43316428 | 43308860 | ID=Msa0682200;Name=Msa0682200 |
| chr4_4 | mRNA | 43308860 | 43316428 | 43308860 | ID=Msa0682200-mRNA-1;Parent=Msa0682200;Name=Msa0682200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=60|0.88|0.9|1|0.77|0.7|10|342|242 |
| chr4_4 | exon | 43308860 | 43308972 | 43308860 | ID=Msa0682200-mRNA-1:exon:10563;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43309438 | 43309647 | 43309438 | ID=Msa0682200-mRNA-1:exon:10562;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43311074 | 43311193 | 43311074 | ID=Msa0682200-mRNA-1:exon:10561;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43313321 | 43313410 | 43313321 | ID=Msa0682200-mRNA-1:exon:10560;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43314205 | 43314290 | 43314205 | ID=Msa0682200-mRNA-1:exon:10559;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43314351 | 43314430 | 43314351 | ID=Msa0682200-mRNA-1:exon:10558;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43314846 | 43314906 | 43314846 | ID=Msa0682200-mRNA-1:exon:10557;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43315085 | 43315146 | 43315085 | ID=Msa0682200-mRNA-1:exon:10556;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43316044 | 43316172 | 43316044 | ID=Msa0682200-mRNA-1:exon:10555;Parent=Msa0682200-mRNA-1 |
| chr4_4 | exon | 43316249 | 43316428 | 43316249 | ID=Msa0682200-mRNA-1:exon:10554;Parent=Msa0682200-mRNA-1 |
| chr4_4 | five_prime_UTR | 43316369 | 43316428 | 43316369 | ID=Msa0682200-mRNA-1:five_prime_utr;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43316249 | 43316368 | 43316249 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43316044 | 43316172 | 43316044 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43315085 | 43315146 | 43315085 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43314846 | 43314906 | 43314846 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43314351 | 43314430 | 43314351 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43314205 | 43314290 | 43314205 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43313321 | 43313410 | 43313321 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | CDS | 43311093 | 43311193 | 43311093 | ID=Msa0682200-mRNA-1:cds;Parent=Msa0682200-mRNA-1 |
| chr4_4 | three_prime_UTR | 43311074 | 43311092 | 43311074 | ID=Msa0682200-mRNA-1:three_prime_utr;Parent=Msa0682200-mRNA-1 |
| chr4_4 | three_prime_UTR | 43309438 | 43309647 | 43309438 | ID=Msa0682200-mRNA-1:three_prime_utr;Parent=Msa0682200-mRNA-1 |
| chr4_4 | three_prime_UTR | 43308860 | 43308972 | 43308860 | ID=Msa0682200-mRNA-1:three_prime_utr;Parent=Msa0682200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
