AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1120660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1120660 MtrunA17_Chr7g0250851 89.961 259 16 5 1 257 1 251 4.10e-165 456
Msa1120660 MtrunA17_Chr8g0385391 87.190 242 18 4 16 257 15 243 1.37e-148 414
Msa1120660 MtrunA17_Chr8g0378771 58.500 200 79 1 58 257 17 212 7.21e-83 247
Msa1120660 MtrunA17_Chr8g0390771 46.250 240 124 2 14 253 21 255 8.31e-75 228
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1120660 AT5G16140.2 69.231 234 65 2 27 257 11 240 3.41e-118 338
Msa1120660 AT5G16140.1 69.231 234 65 2 27 257 11 240 3.41e-118 338
Msa1120660 AT5G38290.2 63.529 255 82 4 4 257 6 250 1.41e-114 329
Msa1120660 AT5G38290.1 63.529 255 82 4 4 257 2 246 2.10e-114 328
Msa1120660 AT5G19830.1 56.716 201 83 1 56 256 16 212 6.87e-80 240
Msa1120660 AT1G18440.1 55.263 190 81 1 58 247 94 279 1.89e-77 236
Msa1120660 AT1G18440.2 61.607 112 39 1 58 169 94 201 1.78e-43 147

Find 71 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAACCCTCCTGGAACTA+TGG 0.238093 7_3:-70257397 Msa1120660:CDS
ATAATGAAAGTTCCTTCTTC+TGG 0.257421 7_3:+70259279 None:intergenic
GCAAGGCAACCTTTGCTCTT+TGG 0.269788 7_3:-70256650 Msa1120660:three_prime_UTR
CATGTCAATAGATTCAATTT+AGG 0.292948 7_3:-70256874 Msa1120660:CDS
ATGTCAATAGATTCAATTTA+GGG 0.304320 7_3:-70256873 Msa1120660:CDS
ACATGGCTAATCTACGAAAT+TGG 0.307435 7_3:-70256684 Msa1120660:three_prime_UTR
TCCTTGGCTTGTTGTTGGCT+TGG 0.320294 7_3:-70259158 Msa1120660:CDS
TTTATATGTACAGGTTCTAT+AGG 0.328169 7_3:-70258723 Msa1120660:intron
TGATGCCCATGTCCACCTTT+AGG 0.328247 7_3:+70258256 None:intergenic
GTGCCATGATATTTATTTCC+AGG 0.328897 7_3:+70259130 None:intergenic
CCTTGGCTTGTTGTTGGCTT+GGG 0.334876 7_3:-70259157 Msa1120660:CDS
TGAGGTTTCGCCAACAAAAC+TGG 0.384292 7_3:+70258693 None:intergenic
CTAAAATTCATGTATGTTTG+AGG 0.385508 7_3:+70258675 None:intergenic
GCTCTTAAATCCATAGTTCC+AGG 0.394847 7_3:+70257387 None:intergenic
TATACTCCTTGGCTTGTTGT+TGG 0.402188 7_3:-70259163 Msa1120660:CDS
AAATAATTGATAGTCTTTCT+CGG 0.408351 7_3:-70258891 Msa1120660:CDS
ATGGCAGGTTGATGAGTCAT+TGG 0.410508 7_3:-70256947 Msa1120660:intron
TGAAGCTTTAAAACACCGTT+TGG 0.415620 7_3:+70258280 None:intergenic
AAATACGTACAACAAGAATA+TGG 0.417215 7_3:+70258405 None:intergenic
TTAAGACCTTAGTGCTCAAT+GGG 0.429285 7_3:-70256906 Msa1120660:CDS
TAATGAAAGTTCCTTCTTCT+GGG 0.432772 7_3:+70259280 None:intergenic
GTTAAGACCTTAGTGCTCAA+TGG 0.445730 7_3:-70256907 Msa1120660:CDS
ATACAGTCAAAAGCCTTGAT+TGG 0.447917 7_3:-70258844 Msa1120660:CDS
AATTGAATCTATTGACATGA+TGG 0.460838 7_3:+70256878 None:intergenic
ATAGAATTTATCATAGAGAA+AGG 0.465136 7_3:+70256617 None:intergenic
TCAAAAGCCTTGATTGGAAT+AGG 0.471258 7_3:-70258838 Msa1120660:CDS
GTAGGAATCGGAAACCCTCC+TGG 0.472720 7_3:-70257405 Msa1120660:intron
AAAGGTTGCCTTGCAACATA+TGG 0.477301 7_3:+70256659 None:intergenic
AAAGTTCCTTCTTCTGGGAT+AGG 0.480411 7_3:+70259285 None:intergenic
CTTTCTCTTCTCCACTGACT+CGG 0.485631 7_3:-70259498 Msa1120660:five_prime_UTR
AACCCTGGAAATAAATATCA+TGG 0.487852 7_3:-70259133 Msa1120660:CDS
TGCCATGATATTTATTTCCA+GGG 0.489073 7_3:+70259131 None:intergenic
CTTCAACCTAAAGGTGGACA+TGG 0.505877 7_3:-70258262 Msa1120660:CDS
TCTACAAAAGTTCAGTTCAG+TGG 0.508418 7_3:-70257358 Msa1120660:CDS
CAGTTCAGTGGAAAGAAAGC+AGG 0.510677 7_3:-70257346 Msa1120660:intron
GCTTTAAAACACCGTTTGGA+AGG 0.513540 7_3:+70258284 None:intergenic
GTGGACATGGGCATCACAAT+GGG 0.516901 7_3:-70258249 Msa1120660:intron
CAATGGAGATACTAATAAAG+TGG 0.520031 7_3:-70259188 Msa1120660:CDS
GTTGTTGGCTTGGGTAACCC+TGG 0.525883 7_3:-70259148 Msa1120660:CDS
TGATGCACCTATTCCAATCA+AGG 0.536942 7_3:+70258831 None:intergenic
ATAAAGTGGAATATACTCCT+TGG 0.537329 7_3:-70259174 Msa1120660:CDS
TCTGGGATAGGTAAAAGATA+AGG 0.542305 7_3:+70259297 None:intergenic
GTTAAAGGTTGGGCCTCTTG+CGG 0.543533 7_3:-70258450 Msa1120660:intron
AATGTGATTGGCCATTTGGA+TGG 0.549742 7_3:-70257543 Msa1120660:CDS
GATAGTCTTTCTCGGTCAGA+AGG 0.550469 7_3:-70258883 Msa1120660:CDS
GTTAAACCCATTGAGCACTA+AGG 0.557059 7_3:+70256900 None:intergenic
AGCATACACAATGTGGTAAG+TGG 0.565442 7_3:+70256769 None:intergenic
GGATAGGTAAAAGATAAGGT+TGG 0.570572 7_3:+70259301 None:intergenic
GTGTGGAACCGAACAACGAA+CGG 0.573170 7_3:+70259219 None:intergenic
TTCGTAGATTAGCCATGTGA+GGG 0.573720 7_3:+70256689 None:intergenic
TTAAAGCTTCAACCTAAAGG+TGG 0.579023 7_3:-70258268 Msa1120660:CDS
GGTGGACATGGGCATCACAA+TGG 0.579435 7_3:-70258250 Msa1120660:CDS
AATCACGAGAACCATCCAAA+TGG 0.582644 7_3:+70257532 None:intergenic
CCCAAGCCAACAACAAGCCA+AGG 0.596759 7_3:+70259157 None:intergenic
CTGAATAGTATCCGAGTCAG+TGG 0.598597 7_3:+70259487 None:intergenic
TCTCCATTGTTATTTGTGTG+TGG 0.602143 7_3:+70259202 None:intergenic
AATTGGTACCATATGTTGCA+AGG 0.604327 7_3:-70256667 Msa1120660:three_prime_UTR
GATGAAACTAGCCTTCCAAA+CGG 0.612453 7_3:-70258295 Msa1120660:CDS
TTTCGTAGATTAGCCATGTG+AGG 0.612987 7_3:+70256688 None:intergenic
AATGCTCACTCTCCCTCACA+TGG 0.617837 7_3:-70256701 Msa1120660:three_prime_UTR
ACTCGATAATATGCCGCAAG+AGG 0.622540 7_3:+70258437 None:intergenic
TATGAGATGCCAAAGAGCAA+AGG 0.626582 7_3:+70256641 None:intergenic
TTAAATCCATAGTTCCAGGA+GGG 0.631727 7_3:+70257391 None:intergenic
AACAAACCGATTGCAAGTCG+AGG 0.634342 7_3:+70257507 None:intergenic
AATGTGGTAAGTGGTAAACA+TGG 0.637460 7_3:+70256778 None:intergenic
GTTGATGAGTCATTGGAGCA+AGG 0.639313 7_3:-70256940 Msa1120660:CDS
GTTCCACACACAAATAACAA+TGG 0.645157 7_3:-70259205 Msa1120660:CDS
TTCAACCTAAAGGTGGACAT+GGG 0.647848 7_3:-70258261 Msa1120660:CDS
ACAACAAGAATATGGCGCAA+AGG 0.659160 7_3:+70258413 None:intergenic
GAATGCTAGCATACACAATG+TGG 0.683766 7_3:+70256762 None:intergenic
CTTAAATCCATAGTTCCAGG+AGG 0.685463 7_3:+70257390 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTATTTTATATGTAC+AGG - chr7_3:70257438-70257457 Msa1120660:intron 10.0%
!!! TATTAAGATTTTTTAAGTAT+CGG - chr7_3:70257974-70257993 Msa1120660:intron 10.0%
!! TTGTTTCAATAAAAAAAGAT+AGG + chr7_3:70256638-70256657 None:intergenic 15.0%
!! AATTGAATAAAACAAATGAA+TGG + chr7_3:70257085-70257104 None:intergenic 15.0%
!!! CACATTTTTAATATTGTTAA+AGG - chr7_3:70257705-70257724 Msa1120660:intron 15.0%
!!! TTTTTAATATTGTTAAAGGT+TGG - chr7_3:70257709-70257728 Msa1120660:intron 15.0%
!!! TTTTAATATTGTTAAAGGTT+GGG - chr7_3:70257710-70257729 Msa1120660:intron 15.0%
!! ATCAATTCAAATACAAAAAA+AGG + chr7_3:70259174-70259193 None:intergenic 15.0%
!! AAATAAAAAGAAAACAGTAT+TGG + chr7_3:70259198-70259217 None:intergenic 15.0%
!!! AAATAATTGATAGTCTTTCT+CGG - chr7_3:70257279-70257298 Msa1120660:intron 20.0%
!!! AAACATACATGAATTTTAGT+GGG - chr7_3:70257499-70257518 Msa1120660:intron 20.0%
!! TGTTACAGTTTAGAAATTTA+TGG - chr7_3:70257806-70257825 Msa1120660:intron 20.0%
!!! GAAATTTATGGATTTTTCTT+TGG - chr7_3:70257818-70257837 Msa1120660:intron 20.0%
!!! TTGTTGTATTTCTAATATCA+TGG - chr7_3:70257950-70257969 Msa1120660:intron 20.0%
!! GAATTAAGATATGTATAGTA+AGG - chr7_3:70258114-70258133 Msa1120660:intron 20.0%
!! AAGAGTAAAAAGAATTTCAA+CGG + chr7_3:70258190-70258209 None:intergenic 20.0%
!! TTATCTAGGTTTACATATTA+TGG + chr7_3:70258295-70258314 None:intergenic 20.0%
!!! CAAGATTTAAGTTATTATCT+AGG + chr7_3:70258309-70258328 None:intergenic 20.0%
!!! TATTCTATACATTTTAGTGA+TGG - chr7_3:70258365-70258384 Msa1120660:intron 20.0%
!!! TTTTATGGATAATACAAAGA+CGG - chr7_3:70258421-70258440 Msa1120660:CDS 20.0%
!! AAATAAGTCAAGGAAAAAAA+AGG + chr7_3:70258465-70258484 None:intergenic 20.0%
!!! TTTTTTTCCTTGACTTATTT+AGG - chr7_3:70258465-70258484 Msa1120660:intron 20.0%
!! TTAAATAAGTCAAGAAAACA+AGG + chr7_3:70258513-70258532 None:intergenic 20.0%
!!! AAATTGCATTTTTACTTTGT+AGG - chr7_3:70258747-70258766 Msa1120660:intron 20.0%
!!! CTTTTTATTTTTTTAATGGC+AGG - chr7_3:70259208-70259227 Msa1120660:CDS 20.0%
!! ATGTCAATAGATTCAATTTA+GGG - chr7_3:70259297-70259316 Msa1120660:CDS 20.0%
!! CTATAATAACAAAAAACTAG+TGG + chr7_3:70259365-70259384 None:intergenic 20.0%
!! ATAGAATTTATCATAGAGAA+AGG + chr7_3:70259556-70259575 None:intergenic 20.0%
! AAACACTTTAAATGCATGTT+TGG + chr7_3:70257194-70257213 None:intergenic 25.0%
!! TTGTACTTAATCTGATTTTG+TGG - chr7_3:70257232-70257251 Msa1120660:intron 25.0%
! TTTATATGTACAGGTTCTAT+AGG - chr7_3:70257447-70257466 Msa1120660:intron 25.0%
! CTAAAATTCATGTATGTTTG+AGG + chr7_3:70257498-70257517 None:intergenic 25.0%
!! CAAACATACATGAATTTTAG+TGG - chr7_3:70257498-70257517 Msa1120660:intron 25.0%
!!! AACATACATGAATTTTAGTG+GGG - chr7_3:70257500-70257519 Msa1120660:intron 25.0%
! AAATACGTACAACAAGAATA+TGG + chr7_3:70257768-70257787 None:intergenic 25.0%
! TTTCTAAACTGTAACAAAAC+AGG + chr7_3:70257802-70257821 None:intergenic 25.0%
!! GTTTGTGGAAATTTTTATGT+AGG - chr7_3:70257847-70257866 Msa1120660:intron 25.0%
! CCTATTCTTGAAATCATATT+TGG + chr7_3:70258002-70258021 None:intergenic 25.0%
! CCAAATATGATTTCAAGAAT+AGG - chr7_3:70257999-70258018 Msa1120660:intron 25.0%
! TTACTTCATGAATAATGAGA+TGG - chr7_3:70258050-70258069 Msa1120660:intron 25.0%
! AAGATATGTATAGTAAGGAT+TGG - chr7_3:70258119-70258138 Msa1120660:intron 25.0%
! AGATATGTATAGTAAGGATT+GGG - chr7_3:70258120-70258139 Msa1120660:intron 25.0%
!! TCTTTTTACTCTTAACAATG+AGG - chr7_3:70258197-70258216 Msa1120660:intron 25.0%
! TAATAACTTAAATCTTGCCA+TGG - chr7_3:70258312-70258331 Msa1120660:intron 25.0%
! AATAACTTAAATCTTGCCAT+GGG - chr7_3:70258313-70258332 Msa1120660:intron 25.0%
!! TTGCAACTTCTATGATTTTA+TGG - chr7_3:70258406-70258425 Msa1120660:intron 25.0%
! TTTATGGATAATACAAAGAC+GGG - chr7_3:70258422-70258441 Msa1120660:CDS 25.0%
! GAAATTATGAAGTCTATAAC+TGG - chr7_3:70258580-70258599 Msa1120660:intron 25.0%
! TACAGATTGAAAAATGTGAT+TGG - chr7_3:70258615-70258634 Msa1120660:intron 25.0%
!! CATTTTTACTTTGTAGGAAT+CGG - chr7_3:70258753-70258772 Msa1120660:intron 25.0%
! TCCATAGATAAGAACAATTT+AGG - chr7_3:70258962-70258981 Msa1120660:intron 25.0%
! TCCTAAATTGTTCTTATCTA+TGG + chr7_3:70258966-70258985 None:intergenic 25.0%
!! ACAATTTAGGATTTAGTTTC+TGG - chr7_3:70258975-70258994 Msa1120660:intron 25.0%
! AGCAAATTATAAGTTAGACA+AGG - chr7_3:70259051-70259070 Msa1120660:intron 25.0%
! AATTGAATCTATTGACATGA+TGG + chr7_3:70259295-70259314 None:intergenic 25.0%
! CATGTCAATAGATTCAATTT+AGG - chr7_3:70259296-70259315 Msa1120660:CDS 25.0%
! AAAGATAGGAGATTTTTCTC+TGG + chr7_3:70256624-70256643 None:intergenic 30.0%
CATTAACCAAAAATATGCGA+GGG + chr7_3:70256722-70256741 None:intergenic 30.0%
!!! ATTTTTGGTTAATGGTCTGT+AGG - chr7_3:70256728-70256747 Msa1120660:intron 30.0%
TAATGAAAGTTCCTTCTTCT+GGG + chr7_3:70256893-70256912 None:intergenic 30.0%
ATAATGAAAGTTCCTTCTTC+TGG + chr7_3:70256894-70256913 None:intergenic 30.0%
!! GATGTTTTAAGTGAATAACG+AGG + chr7_3:70256917-70256936 None:intergenic 30.0%
CAATGGAGATACTAATAAAG+TGG - chr7_3:70256982-70257001 Msa1120660:intron 30.0%
ATAAAGTGGAATATACTCCT+TGG - chr7_3:70256996-70257015 Msa1120660:intron 30.0%
AACCCTGGAAATAAATATCA+TGG - chr7_3:70257037-70257056 Msa1120660:intron 30.0%
TGCCATGATATTTATTTCCA+GGG + chr7_3:70257042-70257061 None:intergenic 30.0%
! CAAAATCAATTTTGCTCAAC+AGG - chr7_3:70257166-70257185 Msa1120660:intron 30.0%
! TTTTGTGGATTCTCTATGTT+AGG - chr7_3:70257247-70257266 Msa1120660:intron 30.0%
TCAATGTTGCAATTAACCAT+GGG + chr7_3:70257412-70257431 None:intergenic 30.0%
ATCAATGTTGCAATTAACCA+TGG + chr7_3:70257413-70257432 None:intergenic 30.0%
!! TTTCTTTGGCTTTAAGTTTG+TGG - chr7_3:70257832-70257851 Msa1120660:intron 30.0%
!!! GTTTTAAAGCTTCAACCTAA+AGG - chr7_3:70257899-70257918 Msa1120660:intron 30.0%
! TTTTACTCTTAACAATGAGG+AGG - chr7_3:70258200-70258219 Msa1120660:intron 30.0%
AATATTATACAGGTTACCCA+TGG + chr7_3:70258332-70258351 None:intergenic 30.0%
GTTGAGAGCAAATATTATAC+AGG + chr7_3:70258342-70258361 None:intergenic 30.0%
! TTTAGCTCCTAAATAAGTCA+AGG + chr7_3:70258475-70258494 None:intergenic 30.0%
TCATAATTTCCCAGTATAAG+AGG + chr7_3:70258570-70258589 None:intergenic 30.0%
TTTATAAGCTGATATAGCCT+TGG - chr7_3:70258702-70258721 Msa1120660:CDS 30.0%
TATACTCTGATAAACAACCA+AGG + chr7_3:70258722-70258741 None:intergenic 30.0%
!! CAGATTATGCCATCATTTTT+AGG + chr7_3:70259437-70259456 None:intergenic 30.0%
CCATTAACCAAAAATATGCG+AGG + chr7_3:70256723-70256742 None:intergenic 35.0%
!!! CCTCGCATATTTTTGGTTAA+TGG - chr7_3:70256720-70256739 Msa1120660:intron 35.0%
GGATAGGTAAAAGATAAGGT+TGG + chr7_3:70256872-70256891 None:intergenic 35.0%
! TCTGGGATAGGTAAAAGATA+AGG + chr7_3:70256876-70256895 None:intergenic 35.0%
! ATCATTTTCCGTTCGTTGTT+CGG - chr7_3:70256943-70256962 Msa1120660:CDS 35.0%
GTTCCACACACAAATAACAA+TGG - chr7_3:70256965-70256984 Msa1120660:intron 35.0%
!! TCTCCATTGTTATTTGTGTG+TGG + chr7_3:70256971-70256990 None:intergenic 35.0%
GTGCCATGATATTTATTTCC+AGG + chr7_3:70257043-70257062 None:intergenic 35.0%
ATACAGTCAAAAGCCTTGAT+TGG - chr7_3:70257326-70257345 Msa1120660:intron 35.0%
TCAAAAGCCTTGATTGGAAT+AGG - chr7_3:70257332-70257351 Msa1120660:intron 35.0%
!! CATGAATTTTAGTGGGGAAT+CGG - chr7_3:70257506-70257525 Msa1120660:intron 35.0%
!! TGAAGCTTTAAAACACCGTT+TGG + chr7_3:70257893-70257912 None:intergenic 35.0%
TTAAAGCTTCAACCTAAAGG+TGG - chr7_3:70257902-70257921 Msa1120660:intron 35.0%
AAGTCATCTCCTCTTATACT+GGG - chr7_3:70258558-70258577 Msa1120660:intron 35.0%
! GAAAAATGTGATTGGCCATT+TGG - chr7_3:70258623-70258642 Msa1120660:intron 35.0%
TTAAATCCATAGTTCCAGGA+GGG + chr7_3:70258782-70258801 None:intergenic 35.0%
TCTACAAAAGTTCAGTTCAG+TGG - chr7_3:70258812-70258831 Msa1120660:intron 35.0%
ACACTTGATAGAAGACTAGA+AGG + chr7_3:70258855-70258874 None:intergenic 35.0%
AAGGCAAATATGTAGACAGT+TGG - chr7_3:70259070-70259089 Msa1120660:intron 35.0%
TTAAGACCTTAGTGCTCAAT+GGG - chr7_3:70259264-70259283 Msa1120660:CDS 35.0%
AATGTGGTAAGTGGTAAACA+TGG + chr7_3:70259395-70259414 None:intergenic 35.0%
GCATTCTCACCTAAAAATGA+TGG - chr7_3:70259425-70259444 Msa1120660:intron 35.0%
ACATGGCTAATCTACGAAAT+TGG - chr7_3:70259486-70259505 Msa1120660:five_prime_UTR 35.0%
AATTGGTACCATATGTTGCA+AGG - chr7_3:70259503-70259522 Msa1120660:five_prime_UTR 35.0%
!!! TTCTCTGGTTTTGCGTGTAT+CGG + chr7_3:70256609-70256628 None:intergenic 40.0%
! TGCTTTCCCTCGCATATTTT+TGG - chr7_3:70256713-70256732 Msa1120660:three_prime_UTR 40.0%
! CTTTTACCTATCCCAGAAGA+AGG - chr7_3:70256879-70256898 Msa1120660:CDS 40.0%
!! AAAGTTCCTTCTTCTGGGAT+AGG + chr7_3:70256888-70256907 None:intergenic 40.0%
!! TATACTCCTTGGCTTGTTGT+TGG - chr7_3:70257007-70257026 Msa1120660:intron 40.0%
GTGGATTCTCTATGTTAGGT+TGG - chr7_3:70257251-70257270 Msa1120660:intron 40.0%
TGATGCACCTATTCCAATCA+AGG + chr7_3:70257342-70257361 None:intergenic 40.0%
TTAGCTATTGAACCTTCCCA+TGG - chr7_3:70257393-70257412 Msa1120660:CDS 40.0%
TGTTGCAATTAACCATGGGA+AGG + chr7_3:70257408-70257427 None:intergenic 40.0%
!!! AGGAGAAGTACCAGTTTTGT+TGG - chr7_3:70257467-70257486 Msa1120660:intron 40.0%
ACAACAAGAATATGGCGCAA+AGG + chr7_3:70257760-70257779 None:intergenic 40.0%
!! GATGAAACTAGCCTTCCAAA+CGG - chr7_3:70257875-70257894 Msa1120660:intron 40.0%
!! GCTTTAAAACACCGTTTGGA+AGG + chr7_3:70257889-70257908 None:intergenic 40.0%
TTCAACCTAAAGGTGGACAT+GGG - chr7_3:70257909-70257928 Msa1120660:intron 40.0%
ATAGTAAGGATTGGGCTTCT+AGG - chr7_3:70258128-70258147 Msa1120660:intron 40.0%
!! TGTGTTGGTGGTGTCATATA+AGG - chr7_3:70258152-70258171 Msa1120660:intron 40.0%
TACTCTTAACAATGAGGAGG+TGG - chr7_3:70258203-70258222 Msa1120660:intron 40.0%
AATGAGGAGGTGGTATTATG+TGG - chr7_3:70258213-70258232 Msa1120660:intron 40.0%
ATGAGGAGGTGGTATTATGT+GGG - chr7_3:70258214-70258233 Msa1120660:intron 40.0%
CAAGTCATCTCCTCTTATAC+TGG - chr7_3:70258557-70258576 Msa1120660:intron 40.0%
! AATGTGATTGGCCATTTGGA+TGG - chr7_3:70258627-70258646 Msa1120660:intron 40.0%
AATCACGAGAACCATCCAAA+TGG + chr7_3:70258641-70258660 None:intergenic 40.0%
!! GATTTTCCTCGACTTGCAAT+CGG - chr7_3:70258657-70258676 Msa1120660:intron 40.0%
CTTAAATCCATAGTTCCAGG+AGG + chr7_3:70258783-70258802 None:intergenic 40.0%
GCTCTTAAATCCATAGTTCC+AGG + chr7_3:70258786-70258805 None:intergenic 40.0%
GTGTGACCTACAAAAGCAAT+AGG - chr7_3:70259092-70259111 Msa1120660:intron 40.0%
TGACCTACAAAAGCAATAGG+AGG - chr7_3:70259095-70259114 Msa1120660:intron 40.0%
GACCTACAAAAGCAATAGGA+GGG - chr7_3:70259096-70259115 Msa1120660:intron 40.0%
ACCTACAAAAGCAATAGGAG+GGG - chr7_3:70259097-70259116 Msa1120660:intron 40.0%
ATCTTAGTGCCACAGATTTC+AGG + chr7_3:70259128-70259147 None:intergenic 40.0%
GTTAAGACCTTAGTGCTCAA+TGG - chr7_3:70259263-70259282 Msa1120660:CDS 40.0%
GTTAAACCCATTGAGCACTA+AGG + chr7_3:70259273-70259292 None:intergenic 40.0%
AGCATACACAATGTGGTAAG+TGG + chr7_3:70259404-70259423 None:intergenic 40.0%
GAATGCTAGCATACACAATG+TGG + chr7_3:70259411-70259430 None:intergenic 40.0%
! TTCGTAGATTAGCCATGTGA+GGG + chr7_3:70259484-70259503 None:intergenic 40.0%
! TTTCGTAGATTAGCCATGTG+AGG + chr7_3:70259485-70259504 None:intergenic 40.0%
AAAGGTTGCCTTGCAACATA+TGG + chr7_3:70259514-70259533 None:intergenic 40.0%
TATGAGATGCCAAAGAGCAA+AGG + chr7_3:70259532-70259551 None:intergenic 40.0%
! CTTTCTCTTCTCCACTGACT+CGG - chr7_3:70256672-70256691 Msa1120660:three_prime_UTR 45.0%
CTGAATAGTATCCGAGTCAG+TGG + chr7_3:70256686-70256705 None:intergenic 45.0%
GATAGTCTTTCTCGGTCAGA+AGG - chr7_3:70257287-70257306 Msa1120660:intron 45.0%
TGAGGTTTCGCCAACAAAAC+TGG + chr7_3:70257480-70257499 None:intergenic 45.0%
ACACACGCACACACTGAAAT+TGG - chr7_3:70257577-70257596 Msa1120660:intron 45.0%
GCACACACTGAAATTGGTCA+TGG - chr7_3:70257583-70257602 Msa1120660:intron 45.0%
ACTCGATAATATGCCGCAAG+AGG + chr7_3:70257736-70257755 None:intergenic 45.0%
CTTCAACCTAAAGGTGGACA+TGG - chr7_3:70257908-70257927 Msa1120660:intron 45.0%
!! ATTGGGCTTCTAGGATGTGT+TGG - chr7_3:70258137-70258156 Msa1120660:intron 45.0%
!! GTTGGTGGTGTCATATAAGG+CGG - chr7_3:70258155-70258174 Msa1120660:intron 45.0%
GTCATATAAGGCGGATACGA+AGG - chr7_3:70258164-70258183 Msa1120660:intron 45.0%
AACAAACCGATTGCAAGTCG+AGG + chr7_3:70258666-70258685 None:intergenic 45.0%
CAGTTCAGTGGAAAGAAAGC+AGG - chr7_3:70258824-70258843 Msa1120660:intron 45.0%
!! ACCCCTCCTATTGCTTTTGT+AGG + chr7_3:70259101-70259120 None:intergenic 45.0%
GGGGTTAAACCTGAAATCTG+TGG - chr7_3:70259116-70259135 Msa1120660:intron 45.0%
!! ATGGCAGGTTGATGAGTCAT+TGG - chr7_3:70259223-70259242 Msa1120660:CDS 45.0%
! GTTGATGAGTCATTGGAGCA+AGG - chr7_3:70259230-70259249 Msa1120660:CDS 45.0%
!! AAAATAAAATAAAAAATCAA+TGG + chr7_3:70257372-70257391 None:intergenic 5.0%
!!! TTTTCTTTTTATTTTTTTAA+TGG - chr7_3:70259204-70259223 Msa1120660:CDS 5.0%
GTGTGGAACCGAACAACGAA+CGG + chr7_3:70256954-70256973 None:intergenic 50.0%
!! TCCTTGGCTTGTTGTTGGCT+TGG - chr7_3:70257012-70257031 Msa1120660:intron 50.0%
!! CCTTGGCTTGTTGTTGGCTT+GGG - chr7_3:70257013-70257032 Msa1120660:intron 50.0%
GTTAAAGGTTGGGCCTCTTG+CGG - chr7_3:70257720-70257739 Msa1120660:intron 50.0%
TGATGCCCATGTCCACCTTT+AGG + chr7_3:70257917-70257936 None:intergenic 50.0%
GTGGACATGGGCATCACAAT+GGG - chr7_3:70257921-70257940 Msa1120660:intron 50.0%
AATGCTCACTCTCCCTCACA+TGG - chr7_3:70259469-70259488 Msa1120660:five_prime_UTR 50.0%
GCAAGGCAACCTTTGCTCTT+TGG - chr7_3:70259520-70259539 Msa1120660:five_prime_UTR 50.0%
CCCAAGCCAACAACAAGCCA+AGG + chr7_3:70257016-70257035 None:intergenic 55.0%
!! GTTGTTGGCTTGGGTAACCC+TGG - chr7_3:70257022-70257041 Msa1120660:intron 55.0%
GGTGGACATGGGCATCACAA+TGG - chr7_3:70257920-70257939 Msa1120660:intron 55.0%
!! GGGCTTCTAGGATGTGTTGG+TGG - chr7_3:70258140-70258159 Msa1120660:intron 55.0%
GTAGGAATCGGAAACCCTCC+TGG - chr7_3:70258765-70258784 Msa1120660:intron 55.0%
CGGAAACCCTCCTGGAACTA+TGG - chr7_3:70258773-70258792 Msa1120660:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 70256600 70259592 70256600 ID=Msa1120660;Name=Msa1120660
chr7_3 mRNA 70256600 70259592 70256600 ID=Msa1120660-mRNA-1;Parent=Msa1120660;Name=Msa1120660-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|0.88|0.9|1|0.77|0.6|10|213|257
chr7_3 exon 70256600 70256732 70256600 ID=Msa1120660-mRNA-1:exon:17889;Parent=Msa1120660-mRNA-1
chr7_3 exon 70256766 70256962 70256766 ID=Msa1120660-mRNA-1:exon:17888;Parent=Msa1120660-mRNA-1
chr7_3 exon 70257347 70257423 70257347 ID=Msa1120660-mRNA-1:exon:17887;Parent=Msa1120660-mRNA-1
chr7_3 exon 70257514 70257572 70257514 ID=Msa1120660-mRNA-1:exon:17886;Parent=Msa1120660-mRNA-1
chr7_3 exon 70258250 70258323 70258250 ID=Msa1120660-mRNA-1:exon:17885;Parent=Msa1120660-mRNA-1
chr7_3 exon 70258415 70258465 70258415 ID=Msa1120660-mRNA-1:exon:17884;Parent=Msa1120660-mRNA-1
chr7_3 exon 70258665 70258732 70258665 ID=Msa1120660-mRNA-1:exon:17883;Parent=Msa1120660-mRNA-1
chr7_3 exon 70258827 70258923 70258827 ID=Msa1120660-mRNA-1:exon:17882;Parent=Msa1120660-mRNA-1
chr7_3 exon 70259120 70259354 70259120 ID=Msa1120660-mRNA-1:exon:17881;Parent=Msa1120660-mRNA-1
chr7_3 exon 70259451 70259592 70259451 ID=Msa1120660-mRNA-1:exon:17880;Parent=Msa1120660-mRNA-1
chr7_3 five_prime_UTR 70259451 70259592 70259451 ID=Msa1120660-mRNA-1:five_prime_utr;Parent=Msa1120660-mRNA-1
chr7_3 five_prime_UTR 70259351 70259354 70259351 ID=Msa1120660-mRNA-1:five_prime_utr;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70259120 70259350 70259120 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70258827 70258923 70258827 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70258665 70258732 70258665 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70258415 70258465 70258415 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70258250 70258323 70258250 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70257514 70257572 70257514 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70257347 70257423 70257347 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 CDS 70256846 70256962 70256846 ID=Msa1120660-mRNA-1:cds;Parent=Msa1120660-mRNA-1
chr7_3 three_prime_UTR 70256766 70256845 70256766 ID=Msa1120660-mRNA-1:three_prime_utr;Parent=Msa1120660-mRNA-1
chr7_3 three_prime_UTR 70256600 70256732 70256600 ID=Msa1120660-mRNA-1:three_prime_utr;Parent=Msa1120660-mRNA-1
Gene Sequence

>Msa1120660

ATGTTGCATCTTGCATCTTCTACAAGTCCAACCTTATCTTTTACCTATCCCAGAAGAAGGAACTTTCATTATCCTCGTTATTCACTTAAAACATCATCATCATCATTTTCCGTTCGTTGTTCGGTTCCACACACAAATAACAATGGAGATACTAATAAAGTGGAATATACTCCTTGGCTTGTTGTTGGCTTGGGTAACCCTGGAAATAAATATCATGGCACTAGACACAATGTTGGATTTGAAATAATTGATAGTCTTTCTCGGTCAGAAGGTATTCTGATGAATACAATACAGTCAAAAGCCTTGATTGGAATAGGTGCATCATCACGTTCTATAGGAGAAGTACCAGTTTTGTTGGCGAAACCTCAAACATACATGAATTTTAGTGGGGAATCGGTTGGGCCTCTTGCGGCATATTATCGAGTGCCTTTGCGCCATATTCTTGTTGTTTATGATGAAACTAGCCTTCCAAACGGTGTTTTAAAGCTTCAACCTAAAGGTGGACATGGGCATCACAATGGATTGAAAAATGTGATTGGCCATTTGGATGGTTCTCGTGATTTTCCTCGACTTGCAATCGGAATCGGAAACCCTCCTGGAACTATGGATTTAAGAGCATTTCTTCTACAAAAGTTCAGTTCAGTGGAAAGAAAGCAGGTTGATGAGTCATTGGAGCAAGGAGTTCAAGCTGTTAAGACCTTAGTGCTCAATGGGTTTAACCATCATGTCAATAGATTCAATTTAGGGCAAAAATACAAGTACAATAAAGTTTAA

Protein sequence

>Msa1120660

MLHLASSTSPTLSFTYPRRRNFHYPRYSLKTSSSSFSVRCSVPHTNNNGDTNKVEYTPWLVVGLGNPGNKYHGTRHNVGFEIIDSLSRSEGILMNTIQSKALIGIGASSRSIGEVPVLLAKPQTYMNFSGESVGPLAAYYRVPLRHILVVYDETSLPNGVLKLQPKGGHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQGVQAVKTLVLNGFNHHVNRFNLGQKYKYNKV*