AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1157030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157030 MtrunA17_Chr7g0250851 68.235 255 18 6 1 196 1 251 1.32e-106 306
Msa1157030 MtrunA17_Chr8g0385391 64.135 237 21 5 16 196 15 243 8.48e-91 265
Msa1157030 MtrunA17_Chr8g0378771 63.793 58 21 0 57 114 17 74 2.09e-22 90.1
Msa1157030 MtrunA17_Chr8g0378771 51.807 83 40 0 114 196 130 212 5.22e-22 89.4
Msa1157030 MtrunA17_Chr8g0390771 56.923 65 28 0 50 114 57 121 3.91e-21 87.8
Msa1157030 MtrunA17_Chr8g0390771 41.772 79 46 0 114 192 177 255 5.43e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1157030 AT5G16140.2 45.783 249 69 4 4 196 2 240 3.97e-66 203
Msa1157030 AT5G16140.1 45.783 249 69 4 4 196 2 240 3.97e-66 203
Msa1157030 AT1G18440.1 39.247 186 57 3 57 186 94 279 2.66e-38 133
Msa1157030 AT5G38290.2 69.880 83 25 0 114 196 168 250 3.67e-36 127
Msa1157030 AT5G38290.2 51.240 121 55 2 4 124 6 122 2.41e-33 119
Msa1157030 AT5G38290.1 69.880 83 25 0 114 196 164 246 3.86e-36 127
Msa1157030 AT5G38290.1 51.240 121 55 2 4 124 2 118 2.34e-33 119
Msa1157030 AT1G18440.2 65.517 58 20 0 57 114 94 151 9.10e-23 91.7
Msa1157030 AT5G19830.1 50.000 82 41 0 114 195 131 212 1.34e-20 85.9
Msa1157030 AT5G19830.1 55.000 60 27 0 55 114 16 75 9.87e-19 80.9

Find 63 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTCCCTCGCATATTAT+TGG 0.228416 7_4:+45767667 Msa1157030:five_prime_UTR
CGGAAACCCTCCTGGAACTA+TGG 0.238093 7_4:+45769688 Msa1157030:CDS
ATAATGAAAGTTCCTTCTTC+TGG 0.257421 7_4:-45767845 None:intergenic
CATGTCAATAGATTCAATTT+AGG 0.292948 7_4:+45771132 Msa1157030:CDS
ATGTCAATAGATTCAATTTA+GGG 0.304320 7_4:+45771133 Msa1157030:CDS
ACATGGCTAATCTACGAAAT+TGG 0.307435 7_4:+45771322 Msa1157030:three_prime_UTR
CCTCGCATATTATTGGTTAA+TGG 0.311466 7_4:+45767674 Msa1157030:five_prime_UTR
GTGCCATGGTATTTATTTCC+AGG 0.314037 7_4:-45767991 None:intergenic
TCCTTGGCTTGTTGTTGGCT+TGG 0.320294 7_4:+45767963 Msa1157030:CDS
TTGATATGTACAGGTTCTAT+AGG 0.328169 7_4:+45768365 Msa1157030:intron
CCTTGGCTTGTTGTTGGCTT+GGG 0.334876 7_4:+45767964 Msa1157030:CDS
TTGTTTCAATAAAAGAAGAT+AGG 0.378776 7_4:-45767585 None:intergenic
TGAGGTTTCGCCAACAAAAC+TGG 0.384292 7_4:-45768395 None:intergenic
GCTCTTAAATCCATAGTTCC+AGG 0.394847 7_4:-45769698 None:intergenic
TATACTCCTTGGCTTGTTGT+TGG 0.402188 7_4:+45767958 Msa1157030:CDS
ATGGCAGGTTGATGAGTCAT+TGG 0.410508 7_4:+45771059 Msa1157030:intron
TTAAGACCTTAGTGCTCAAT+GGG 0.429285 7_4:+45771100 Msa1157030:CDS
TAATGAAAGTTCCTTCTTCT+GGG 0.432772 7_4:-45767844 None:intergenic
GTTAAGACCTTAGTGCTCAA+TGG 0.445730 7_4:+45771099 Msa1157030:CDS
ATACAGTCAAAAGCCTTGAT+TGG 0.447917 7_4:+45768248 Msa1157030:CDS
CTTTCTCTTCTCCACTCACT+CGG 0.459861 7_4:+45767626 Msa1157030:five_prime_UTR
AAAGTTCCTTCTTCTGGGAT+AGG 0.460451 7_4:-45767839 None:intergenic
AATTGAATCTATTGACATGA+TGG 0.460838 7_4:-45771128 None:intergenic
ATAGAATTTATCATAGAGAA+AGG 0.465136 7_4:-45771389 None:intergenic
TCAAAAGCCTTGATTGGAAT+AGG 0.471258 7_4:+45768254 Msa1157030:CDS
GTAGGAATCGGAAACCCTCC+TGG 0.472720 7_4:+45769680 Msa1157030:intron
AAAGGTTGCCTTGCAACATA+TGG 0.477301 7_4:-45771347 None:intergenic
CTTTAACCTATCCCAGAAGA+AGG 0.477782 7_4:+45767833 Msa1157030:CDS
TGCCATGGTATTTATTTCCA+GGG 0.492429 7_4:-45767990 None:intergenic
TCTGGGATAGGTTAAAGATA+AGG 0.494074 7_4:-45767827 None:intergenic
TCTACAAAAGTTCAGTTCAG+TGG 0.508418 7_4:+45769727 Msa1157030:CDS
CAGTTCAGTGGAAAGAAAGC+AGG 0.510677 7_4:+45769739 Msa1157030:CDS
CAATGGAGATACTAATAAAG+TGG 0.520031 7_4:+45767933 Msa1157030:CDS
GTTGTTGGCTTGGGTAACCC+TGG 0.525883 7_4:+45767973 Msa1157030:CDS
TGATGCACCTATTCCAATCA+AGG 0.526609 7_4:-45768261 None:intergenic
ATAAAGTGGAATATACTCCT+TGG 0.537329 7_4:+45767947 Msa1157030:CDS
TTACATTGTGTCTAGTGCCA+TGG 0.542992 7_4:-45768005 None:intergenic
GACAGTCTTTCTCAGTCAGA+AGG 0.548697 7_4:+45768209 Msa1157030:CDS
AATGTGATTGGCCATTTGGA+TGG 0.549742 7_4:+45769542 Msa1157030:CDS
GTTAAACCCATTGAGCACTA+AGG 0.557059 7_4:-45771106 None:intergenic
GGATAGGTTAAAGATAAGGT+TGG 0.559820 7_4:-45767823 None:intergenic
AGCATACACAATGTGGTAAG+TGG 0.565442 7_4:-45771237 None:intergenic
GTGTGGAACCGAACAACGAA+CGG 0.573170 7_4:-45767902 None:intergenic
TTCGTAGATTAGCCATGTGA+GGG 0.573720 7_4:-45771317 None:intergenic
AATCACGAGAACCATCCAAA+TGG 0.582644 7_4:-45769553 None:intergenic
CCCAAGCCAACAACAAGCCA+AGG 0.596759 7_4:-45767964 None:intergenic
TCTCCATTGTTATTTGTGTG+TGG 0.602143 7_4:-45767919 None:intergenic
GTGGAGAAGAGAAAGCGAAG+AGG 0.602770 7_4:-45767618 None:intergenic
AATTGGTACCATATGTTGCA+AGG 0.604327 7_4:+45771339 Msa1157030:three_prime_UTR
CTGAATAGTAGCCGAGTGAG+TGG 0.605011 7_4:-45767637 None:intergenic
TTTCGTAGATTAGCCATGTG+AGG 0.612987 7_4:-45771318 None:intergenic
AATGCTCACTCTCCCTCACA+TGG 0.617837 7_4:+45771305 Msa1157030:three_prime_UTR
TATGAGATGTCAAAGAGCAA+AGG 0.628691 7_4:-45771365 None:intergenic
TTAAATCCATAGTTCCAGGA+GGG 0.631727 7_4:-45769694 None:intergenic
AACAAACCGATTGCAAGTCG+AGG 0.634342 7_4:-45769578 None:intergenic
AATGTGGTAAGTGGTAAACA+TGG 0.637460 7_4:-45771228 None:intergenic
GTTGATGAGTCATTGGAGCA+AGG 0.639313 7_4:+45771066 Msa1157030:CDS
CATTAACCAATAATATGCGA+GGG 0.640717 7_4:-45767673 None:intergenic
GTTCCACACACAAATAACAA+TGG 0.645157 7_4:+45767916 Msa1157030:CDS
AACCCTGGAAATAAATACCA+TGG 0.650251 7_4:+45767988 Msa1157030:CDS
CCATTAACCAATAATATGCG+AGG 0.650856 7_4:-45767674 None:intergenic
GAATGCTAGCATACACAATG+TGG 0.683766 7_4:-45771244 None:intergenic
CTTAAATCCATAGTTCCAGG+AGG 0.685463 7_4:-45769695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTTTAATATTGTTAA+AGG + chr7_4:45768619-45768638 Msa1157030:intron 10.0%
!!! TATTAAGATTTTTTAAGTAT+CGG + chr7_4:45768888-45768907 Msa1157030:intron 10.0%
!! TTAAGAAAATAATCAAATAT+CGG - chr7_4:45770389-45770408 None:intergenic 10.0%
!!! CAAATTTCTAAATTTATTTT+AGG - chr7_4:45770653-45770672 None:intergenic 10.0%
!!! TATTTTTAAAACATTTTGTA+TGG - chr7_4:45770680-45770699 None:intergenic 10.0%
!! ATAAAATTAAAATCAATGGT+AGG - chr7_4:45768290-45768309 None:intergenic 15.0%
!! GTAGATAAAATTAAAATCAA+TGG - chr7_4:45768294-45768313 None:intergenic 15.0%
!! TTTAATTATTTGATATGTAC+AGG + chr7_4:45768356-45768375 Msa1157030:intron 15.0%
!!! TTTTTAATATTGTTAAAGGT+TGG + chr7_4:45768623-45768642 Msa1157030:intron 15.0%
!!! TTTTAATATTGTTAAAGGTT+GGG + chr7_4:45768624-45768643 Msa1157030:intron 15.0%
!! ATCAATTCAAATACAAAAAA+AGG - chr7_4:45771010-45771029 None:intergenic 15.0%
!! AAATAAAAAGAAAACAGTAT+TGG - chr7_4:45771034-45771053 None:intergenic 15.0%
!! TTGTTTCAATAAAAGAAGAT+AGG - chr7_4:45767588-45767607 None:intergenic 20.0%
!!! TTTAACTTAAAGCTAGAATT+TGG - chr7_4:45768055-45768074 None:intergenic 20.0%
!!! AAACATACATGAATTTTAGT+GGG + chr7_4:45768417-45768436 Msa1157030:intron 20.0%
!!! TTGTTGTATTTCTAATATCA+TGG + chr7_4:45768864-45768883 Msa1157030:intron 20.0%
!! GAATTAAGATATGTATAGTA+AGG + chr7_4:45769028-45769047 Msa1157030:intron 20.0%
!! AAGAGTAAAAAGAATTTCAA+CGG - chr7_4:45769104-45769123 None:intergenic 20.0%
!! TTATCTAGGTTTACATATTA+TGG - chr7_4:45769209-45769228 None:intergenic 20.0%
!!! CAAGATTTAAGTTATTATCT+AGG - chr7_4:45769223-45769242 None:intergenic 20.0%
!!! TATTCTATACATTTTAGTGA+TGG + chr7_4:45769279-45769298 Msa1157030:intron 20.0%
!!! TTTTATGGATAATACAAAGA+CGG + chr7_4:45769335-45769354 Msa1157030:intron 20.0%
!! AATAAGTCAAGGAAAAAAAA+AGG - chr7_4:45769379-45769398 None:intergenic 20.0%
!!! TTTTTTTCCTTGACTTATTT+AGG + chr7_4:45769380-45769399 Msa1157030:intron 20.0%
!! TTAAATAAGTCAAGAAAACA+AGG - chr7_4:45769428-45769447 None:intergenic 20.0%
!!! AAATTGCATTTTTACTTTGT+AGG + chr7_4:45769662-45769681 Msa1157030:intron 20.0%
!! AAATTATAAGTAGTCAATTG+CGG + chr7_4:45769969-45769988 Msa1157030:intron 20.0%
!! CAAAAAAAGTTATCAAATAG+CGG - chr7_4:45770056-45770075 None:intergenic 20.0%
!! TAAAAGCTTTCATAAGATTT+GGG - chr7_4:45770178-45770197 None:intergenic 20.0%
!! TTAAAGCTTTCATAAGATTT+GGG - chr7_4:45770234-45770253 None:intergenic 20.0%
!!! TTTAAAGCTTTCATAAGATT+TGG - chr7_4:45770235-45770254 None:intergenic 20.0%
!!! AATTTATTTTAGGGCATTTT+GGG - chr7_4:45770643-45770662 None:intergenic 20.0%
!!! AAATTTATTTTAGGGCATTT+TGG - chr7_4:45770644-45770663 None:intergenic 20.0%
!! TTTCAACTAAAATCAAATAG+CGG + chr7_4:45770716-45770735 Msa1157030:intron 20.0%
!!! CTTTTTATTTTTTTAATGGC+AGG + chr7_4:45771044-45771063 Msa1157030:intron 20.0%
!! ATGTCAATAGATTCAATTTA+GGG + chr7_4:45771133-45771152 Msa1157030:CDS 20.0%
!! CTATAATAACAAAAAACTAG+TGG - chr7_4:45771201-45771220 None:intergenic 20.0%
!! ATAGAATTTATCATAGAGAA+AGG - chr7_4:45771392-45771411 None:intergenic 20.0%
! CTAAAATTCATGTATGTTTG+AGG - chr7_4:45768416-45768435 None:intergenic 25.0%
!! CAAACATACATGAATTTTAG+TGG + chr7_4:45768416-45768435 Msa1157030:intron 25.0%
!!! AACATACATGAATTTTAGTG+GGG + chr7_4:45768418-45768437 Msa1157030:intron 25.0%
! TAATACACACATACTGAAAT+TGG + chr7_4:45768487-45768506 Msa1157030:intron 25.0%
! CAAATTGAAGAATCACAATA+AGG - chr7_4:45768571-45768590 None:intergenic 25.0%
! AAATACGTACAACTAGAATA+TGG - chr7_4:45768682-45768701 None:intergenic 25.0%
! TTTCTAAACTGTAACTAAAC+AGG - chr7_4:45768716-45768735 None:intergenic 25.0%
!!! GAAATTTGTTGATTTTTCCT+TGG + chr7_4:45768732-45768751 Msa1157030:intron 25.0%
!! GTTTGTGGAAATTTTTATGT+AGG + chr7_4:45768761-45768780 Msa1157030:intron 25.0%
! CCTATTCTTGAAATCATATT+TGG - chr7_4:45768916-45768935 None:intergenic 25.0%
! CCAAATATGATTTCAAGAAT+AGG + chr7_4:45768913-45768932 Msa1157030:intron 25.0%
! TTACTTCATGAATAATGAGA+TGG + chr7_4:45768964-45768983 Msa1157030:intron 25.0%
! AAGATATGTATAGTAAGGAT+TGG + chr7_4:45769033-45769052 Msa1157030:intron 25.0%
! AGATATGTATAGTAAGGATT+GGG + chr7_4:45769034-45769053 Msa1157030:intron 25.0%
!! TCTTTTTACTCTTAACAATG+AGG + chr7_4:45769111-45769130 Msa1157030:intron 25.0%
! TAATAACTTAAATCTTGCCA+TGG + chr7_4:45769226-45769245 Msa1157030:intron 25.0%
! AATAACTTAAATCTTGCCAT+GGG + chr7_4:45769227-45769246 Msa1157030:intron 25.0%
!! TTGCAACTTCTATGATTTTA+TGG + chr7_4:45769320-45769339 Msa1157030:intron 25.0%
! TTTATGGATAATACAAAGAC+GGG + chr7_4:45769336-45769355 Msa1157030:intron 25.0%
! GAAATTATGAAGTCTATAAC+TGG + chr7_4:45769495-45769514 Msa1157030:intron 25.0%
! TACAGATTGAAAAATGTGAT+TGG + chr7_4:45769530-45769549 Msa1157030:intron 25.0%
!! CATTTTTACTTTGTAGGAAT+CGG + chr7_4:45769668-45769687 Msa1157030:intron 25.0%
! TCCATAGATAAGAACAATTT+AGG + chr7_4:45769877-45769896 Msa1157030:intron 25.0%
! TCCTAAATTGTTCTTATCTA+TGG - chr7_4:45769881-45769900 None:intergenic 25.0%
!! ACAATTTAGGATTTAGTTTC+TGG + chr7_4:45769890-45769909 Msa1157030:intron 25.0%
! GTAAAAGCTTTCATAAGATT+TGG - chr7_4:45770179-45770198 None:intergenic 25.0%
!!! ATTTATTTTAGGGCATTTTG+GGG - chr7_4:45770642-45770661 None:intergenic 25.0%
! TATTACATAGTAGTCAATAG+CGG - chr7_4:45770883-45770902 None:intergenic 25.0%
! AATTGAATCTATTGACATGA+TGG - chr7_4:45771131-45771150 None:intergenic 25.0%
! CATGTCAATAGATTCAATTT+AGG + chr7_4:45771132-45771151 Msa1157030:CDS 25.0%
CATTAACCAATAATATGCGA+GGG - chr7_4:45767676-45767695 None:intergenic 30.0%
TAATGAAAGTTCCTTCTTCT+GGG - chr7_4:45767847-45767866 None:intergenic 30.0%
ATAATGAAAGTTCCTTCTTC+TGG - chr7_4:45767848-45767867 None:intergenic 30.0%
!! GATGTTTTAAGTGAATAACG+AGG - chr7_4:45767871-45767890 None:intergenic 30.0%
CAATGGAGATACTAATAAAG+TGG + chr7_4:45767933-45767952 Msa1157030:CDS 30.0%
ATAAAGTGGAATATACTCCT+TGG + chr7_4:45767947-45767966 Msa1157030:CDS 30.0%
AAACACTTTAAGTGCATGTT+TGG - chr7_4:45768116-45768135 None:intergenic 30.0%
! CTGTACTTAATCTGATTTTG+TGG + chr7_4:45768154-45768173 Msa1157030:intron 30.0%
! TTTTGTGGATTCTCTATGTT+AGG + chr7_4:45768169-45768188 Msa1157030:intron 30.0%
TCAATGTTGCAATTAACCAT+TGG - chr7_4:45768330-45768349 None:intergenic 30.0%
TTGATATGTACAGGTTCTAT+AGG + chr7_4:45768365-45768384 Msa1157030:intron 30.0%
!!! GTTTTAAAGCTTCAACCTAA+AGG + chr7_4:45768813-45768832 Msa1157030:intron 30.0%
! TTTTACTCTTAACAATGAGG+AGG + chr7_4:45769114-45769133 Msa1157030:intron 30.0%
AATATTATACAGGTTACCCA+TGG - chr7_4:45769246-45769265 None:intergenic 30.0%
GTTGAGAGCAAATATTATAC+AGG - chr7_4:45769256-45769275 None:intergenic 30.0%
! TTTAGCTCCTAAATAAGTCA+AGG - chr7_4:45769390-45769409 None:intergenic 30.0%
TCATAATTTCCCAGTATAAG+AGG - chr7_4:45769485-45769504 None:intergenic 30.0%
TTTATAAGCTGATATAGCCT+TGG + chr7_4:45769617-45769636 Msa1157030:intron 30.0%
TATACTCTGATAAACAACCA+AGG - chr7_4:45769637-45769656 None:intergenic 30.0%
TTCAACATAGTAGTCAATCT+CGG + chr7_4:45770289-45770308 Msa1157030:intron 30.0%
TATAGTGGTATGACAAATAG+TGG + chr7_4:45770360-45770379 Msa1157030:intron 30.0%
AATGCCAAAAATCAAAAGAG+AGG + chr7_4:45770526-45770545 Msa1157030:intron 30.0%
!!! TGTTCCTCTCTTTTGATTTT+TGG - chr7_4:45770533-45770552 None:intergenic 30.0%
ACAGAGAAATCATAAAACAG+AGG + chr7_4:45770564-45770583 Msa1157030:intron 30.0%
TGACTACTATGTAATAGACA+AGG + chr7_4:45770887-45770906 Msa1157030:intron 30.0%
!! CAGATTATGCCATCATTTTT+AGG - chr7_4:45771273-45771292 None:intergenic 30.0%
! GAAGATAGGAGATTTTTCTC+TGG - chr7_4:45767574-45767593 None:intergenic 35.0%
CCATTAACCAATAATATGCG+AGG - chr7_4:45767677-45767696 None:intergenic 35.0%
! CCTCGCATATTATTGGTTAA+TGG + chr7_4:45767674-45767693 Msa1157030:five_prime_UTR 35.0%
GGATAGGTTAAAGATAAGGT+TGG - chr7_4:45767826-45767845 None:intergenic 35.0%
! TCTGGGATAGGTTAAAGATA+AGG - chr7_4:45767830-45767849 None:intergenic 35.0%
! ATCATTTTCCGTTCGTTGTT+CGG + chr7_4:45767894-45767913 Msa1157030:CDS 35.0%
GTTCCACACACAAATAACAA+TGG + chr7_4:45767916-45767935 Msa1157030:CDS 35.0%
!! TCTCCATTGTTATTTGTGTG+TGG - chr7_4:45767922-45767941 None:intergenic 35.0%
AACCCTGGAAATAAATACCA+TGG + chr7_4:45767988-45768007 Msa1157030:CDS 35.0%
TGCCATGGTATTTATTTCCA+GGG - chr7_4:45767993-45768012 None:intergenic 35.0%
ATACAGTCAAAAGCCTTGAT+TGG + chr7_4:45768248-45768267 Msa1157030:CDS 35.0%
TCAAAAGCCTTGATTGGAAT+AGG + chr7_4:45768254-45768273 Msa1157030:CDS 35.0%
TACTATATCCAACCTTCCAA+TGG + chr7_4:45768311-45768330 Msa1157030:intron 35.0%
TGTTGCAATTAACCATTGGA+AGG - chr7_4:45768326-45768345 None:intergenic 35.0%
!! CATGAATTTTAGTGGGGAAT+CGG + chr7_4:45768424-45768443 Msa1157030:intron 35.0%
ACACATACTGAAATTGGTCA+TGG + chr7_4:45768493-45768512 Msa1157030:intron 35.0%
!! TTTCCTTGGCTTTAAGTTTG+TGG + chr7_4:45768746-45768765 Msa1157030:intron 35.0%
TTTCCACAAACTTAAAGCCA+AGG - chr7_4:45768752-45768771 None:intergenic 35.0%
!! TGAAGCTTTAAAACACCGTT+TGG - chr7_4:45768807-45768826 None:intergenic 35.0%
TTAAAGCTTCAACCTAAAGG+TGG + chr7_4:45768816-45768835 Msa1157030:intron 35.0%
AAGTCATCTCCTCTTATACT+GGG + chr7_4:45769473-45769492 Msa1157030:intron 35.0%
! GAAAAATGTGATTGGCCATT+TGG + chr7_4:45769538-45769557 Msa1157030:CDS 35.0%
TTAAATCCATAGTTCCAGGA+GGG - chr7_4:45769697-45769716 None:intergenic 35.0%
TCTACAAAAGTTCAGTTCAG+TGG + chr7_4:45769727-45769746 Msa1157030:CDS 35.0%
ACACTTGATAGAAGACTAGA+AGG - chr7_4:45769770-45769789 None:intergenic 35.0%
! TATCCCGCTATAGCATTTTT+GGG - chr7_4:45770017-45770036 None:intergenic 35.0%
! ACCAAATTGACTCTGTTCTA+CGG - chr7_4:45770610-45770629 None:intergenic 35.0%
AAGGCAAATATGTAGACAGT+TGG + chr7_4:45770906-45770925 Msa1157030:intron 35.0%
TTAAGACCTTAGTGCTCAAT+GGG + chr7_4:45771100-45771119 Msa1157030:CDS 35.0%
AATGTGGTAAGTGGTAAACA+TGG - chr7_4:45771231-45771250 None:intergenic 35.0%
GCATTCTCACCTAAAAATGA+TGG + chr7_4:45771261-45771280 Msa1157030:intron 35.0%
ACATGGCTAATCTACGAAAT+TGG + chr7_4:45771322-45771341 Msa1157030:three_prime_UTR 35.0%
AATTGGTACCATATGTTGCA+AGG + chr7_4:45771339-45771358 Msa1157030:three_prime_UTR 35.0%
TATGAGATGTCAAAGAGCAA+AGG - chr7_4:45771368-45771387 None:intergenic 35.0%
TGCTTTCCCTCGCATATTAT+TGG + chr7_4:45767667-45767686 Msa1157030:five_prime_UTR 40.0%
CTTTAACCTATCCCAGAAGA+AGG + chr7_4:45767833-45767852 Msa1157030:CDS 40.0%
!! AAAGTTCCTTCTTCTGGGAT+AGG - chr7_4:45767842-45767861 None:intergenic 40.0%
!! TATACTCCTTGGCTTGTTGT+TGG + chr7_4:45767958-45767977 Msa1157030:CDS 40.0%
GTGCCATGGTATTTATTTCC+AGG - chr7_4:45767994-45768013 None:intergenic 40.0%
TTACATTGTGTCTAGTGCCA+TGG - chr7_4:45768008-45768027 None:intergenic 40.0%
GTGGATTCTCTATGTTAGGT+TGG + chr7_4:45768173-45768192 Msa1157030:intron 40.0%
TGATGCACCTATTCCAATCA+AGG - chr7_4:45768264-45768283 None:intergenic 40.0%
GCAATTAACCATTGGAAGGT+TGG - chr7_4:45768322-45768341 None:intergenic 40.0%
!!! AGGAGAAGTACCAGTTTTGT+TGG + chr7_4:45768385-45768404 Msa1157030:intron 40.0%
!! ATTTTAGTGGGGAATCGGTT+AGG + chr7_4:45768429-45768448 Msa1157030:intron 40.0%
ACTCGATAATATGCAGCAAG+TGG - chr7_4:45768650-45768669 None:intergenic 40.0%
ACAACTAGAATATGGCGCAA+AGG - chr7_4:45768674-45768693 None:intergenic 40.0%
!! GATGAAACTAGCCTTCCAAA+CGG + chr7_4:45768789-45768808 Msa1157030:intron 40.0%
!! GCTTTAAAACACCGTTTGGA+AGG - chr7_4:45768803-45768822 None:intergenic 40.0%
TTCAACCTAAAGGTGGACAT+GGG + chr7_4:45768823-45768842 Msa1157030:intron 40.0%
ATAGTAAGGATTGGGCTTCT+AGG + chr7_4:45769042-45769061 Msa1157030:intron 40.0%
!! TGTGTTGGTGGTGTCATATA+AGG + chr7_4:45769066-45769085 Msa1157030:intron 40.0%
TACTCTTAACAATGAGGAGG+TGG + chr7_4:45769117-45769136 Msa1157030:intron 40.0%
AATGAGGAGGTGGTATTATG+TGG + chr7_4:45769127-45769146 Msa1157030:intron 40.0%
ATGAGGAGGTGGTATTATGT+GGG + chr7_4:45769128-45769147 Msa1157030:intron 40.0%
CAAGTCATCTCCTCTTATAC+TGG + chr7_4:45769472-45769491 Msa1157030:intron 40.0%
! AATGTGATTGGCCATTTGGA+TGG + chr7_4:45769542-45769561 Msa1157030:CDS 40.0%
AATCACGAGAACCATCCAAA+TGG - chr7_4:45769556-45769575 None:intergenic 40.0%
!! GATTTTCCTCGACTTGCAAT+CGG + chr7_4:45769572-45769591 Msa1157030:CDS 40.0%
CTTAAATCCATAGTTCCAGG+AGG - chr7_4:45769698-45769717 None:intergenic 40.0%
GCTCTTAAATCCATAGTTCC+AGG - chr7_4:45769701-45769720 None:intergenic 40.0%
! AAGTAGTCAATTGCGGATTG+CGG + chr7_4:45769976-45769995 Msa1157030:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - chr7_4:45770016-45770035 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG - chr7_4:45770018-45770037 None:intergenic 40.0%
TAGTAGTCAATCTCGGATAG+TGG + chr7_4:45770296-45770315 Msa1157030:intron 40.0%
ACCGTAGAACAGAGTCAATT+TGG + chr7_4:45770606-45770625 Msa1157030:intron 40.0%
AAATCAAATAGCGGCTGAAG+CGG + chr7_4:45770725-45770744 Msa1157030:intron 40.0%
GTGTGACCTACAAAAGCAAT+AGG + chr7_4:45770928-45770947 Msa1157030:intron 40.0%
TGACCTACAAAAGCAATAGG+AGG + chr7_4:45770931-45770950 Msa1157030:intron 40.0%
GACCTACAAAAGCAATAGGA+GGG + chr7_4:45770932-45770951 Msa1157030:intron 40.0%
ACCTACAAAAGCAATAGGAG+GGG + chr7_4:45770933-45770952 Msa1157030:intron 40.0%
! ATCTTAGTGCCACACTTTTC+AGG - chr7_4:45770964-45770983 None:intergenic 40.0%
GTTAAGACCTTAGTGCTCAA+TGG + chr7_4:45771099-45771118 Msa1157030:CDS 40.0%
GTTAAACCCATTGAGCACTA+AGG - chr7_4:45771109-45771128 None:intergenic 40.0%
AGCATACACAATGTGGTAAG+TGG - chr7_4:45771240-45771259 None:intergenic 40.0%
GAATGCTAGCATACACAATG+TGG - chr7_4:45771247-45771266 None:intergenic 40.0%
! TTCGTAGATTAGCCATGTGA+GGG - chr7_4:45771320-45771339 None:intergenic 40.0%
! TTTCGTAGATTAGCCATGTG+AGG - chr7_4:45771321-45771340 None:intergenic 40.0%
AAAGGTTGCCTTGCAACATA+TGG - chr7_4:45771350-45771369 None:intergenic 40.0%
CTTTCTCTTCTCCACTCACT+CGG + chr7_4:45767626-45767645 Msa1157030:five_prime_UTR 45.0%
GACAGTCTTTCTCAGTCAGA+AGG + chr7_4:45768209-45768228 Msa1157030:CDS 45.0%
TGAGGTTTCGCCAACAAAAC+TGG - chr7_4:45768398-45768417 None:intergenic 45.0%
CTTCAACCTAAAGGTGGACA+TGG + chr7_4:45768822-45768841 Msa1157030:intron 45.0%
!! ATTGGGCTTCTAGGATGTGT+TGG + chr7_4:45769051-45769070 Msa1157030:intron 45.0%
!! GTTGGTGGTGTCATATAAGG+CGG + chr7_4:45769069-45769088 Msa1157030:intron 45.0%
GTCATATAAGGCGGATACGA+AGG + chr7_4:45769078-45769097 Msa1157030:intron 45.0%
AACAAACCGATTGCAAGTCG+AGG - chr7_4:45769581-45769600 None:intergenic 45.0%
CAGTTCAGTGGAAAGAAAGC+AGG + chr7_4:45769739-45769758 Msa1157030:CDS 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG - chr7_4:45770012-45770031 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG + chr7_4:45770010-45770029 Msa1157030:intron 45.0%
GACCCCAAAAATGCTATAGC+GGG + chr7_4:45770011-45770030 Msa1157030:intron 45.0%
! GATAGCGGTTTAGCGTATAG+TGG + chr7_4:45770345-45770364 Msa1157030:intron 45.0%
CGCTACGCTAATTGTCATAG+CGG - chr7_4:45770813-45770832 None:intergenic 45.0%
CGCTATGACAATTAGCGTAG+CGG + chr7_4:45770811-45770830 Msa1157030:intron 45.0%
!! ACCCCTCCTATTGCTTTTGT+AGG - chr7_4:45770937-45770956 None:intergenic 45.0%
GGGGTTAAACCTGAAAAGTG+TGG + chr7_4:45770952-45770971 Msa1157030:intron 45.0%
!! ATGGCAGGTTGATGAGTCAT+TGG + chr7_4:45771059-45771078 Msa1157030:intron 45.0%
! GTTGATGAGTCATTGGAGCA+AGG + chr7_4:45771066-45771085 Msa1157030:CDS 45.0%
!!! AAATTTCTAAATTTATTTTA+GGG - chr7_4:45770652-45770671 None:intergenic 5.0%
!!! TTTTCTTTTTATTTTTTTAA+TGG + chr7_4:45771040-45771059 Msa1157030:intron 5.0%
GTGGAGAAGAGAAAGCGAAG+AGG - chr7_4:45767621-45767640 None:intergenic 50.0%
CTGAATAGTAGCCGAGTGAG+TGG - chr7_4:45767640-45767659 None:intergenic 50.0%
GTGTGGAACCGAACAACGAA+CGG - chr7_4:45767905-45767924 None:intergenic 50.0%
!! TCCTTGGCTTGTTGTTGGCT+TGG + chr7_4:45767963-45767982 Msa1157030:CDS 50.0%
!! CCTTGGCTTGTTGTTGGCTT+GGG + chr7_4:45767964-45767983 Msa1157030:CDS 50.0%
TGATGCCCATGTCCACCTTT+AGG - chr7_4:45768831-45768850 None:intergenic 50.0%
GTGGACATGGGCATCACAAT+GGG + chr7_4:45768835-45768854 Msa1157030:intron 50.0%
CGTAGAGGCCAACCTCAAAA+GGG + chr7_4:45770321-45770340 Msa1157030:intron 50.0%
GTAGAGGCCAACCTCAAAAG+GGG + chr7_4:45770322-45770341 Msa1157030:intron 50.0%
TAGAGGCCAACCTCAAAAGG+GGG + chr7_4:45770323-45770342 Msa1157030:intron 50.0%
CAACCTCAAAAGGGGGATAG+CGG + chr7_4:45770330-45770349 Msa1157030:intron 50.0%
! AAACCGCTATCCCCCTTTTG+AGG - chr7_4:45770336-45770355 None:intergenic 50.0%
! TGCTATAGCGGAGCAGATAG+CGG - chr7_4:45770751-45770770 None:intergenic 50.0%
! ATGAGATAGCGGCGCTATAG+CGG - chr7_4:45770784-45770803 None:intergenic 50.0%
CGCTAATTGTCATAGCGGTG+CGG - chr7_4:45770808-45770827 None:intergenic 50.0%
TAGTCAATAGCGGCCGATAG+CGG - chr7_4:45770873-45770892 None:intergenic 50.0%
AATGCTCACTCTCCCTCACA+TGG + chr7_4:45771305-45771324 Msa1157030:three_prime_UTR 50.0%
CCCAAGCCAACAACAAGCCA+AGG - chr7_4:45767967-45767986 None:intergenic 55.0%
!! GTTGTTGGCTTGGGTAACCC+TGG + chr7_4:45767973-45767992 Msa1157030:CDS 55.0%
GGTGGACATGGGCATCACAA+TGG + chr7_4:45768834-45768853 Msa1157030:intron 55.0%
!! GGGCTTCTAGGATGTGTTGG+TGG + chr7_4:45769054-45769073 Msa1157030:intron 55.0%
GTAGGAATCGGAAACCCTCC+TGG + chr7_4:45769680-45769699 Msa1157030:intron 55.0%
CGGAAACCCTCCTGGAACTA+TGG + chr7_4:45769688-45769707 Msa1157030:CDS 55.0%
! TCTCGGATAGTGGTGCGTAG+AGG + chr7_4:45770306-45770325 Msa1157030:intron 55.0%
GCGTAGAGGCCAACCTCAAA+AGG + chr7_4:45770320-45770339 Msa1157030:intron 55.0%
!!! CGCTATCCCCCTTTTGAGGT+TGG - chr7_4:45770332-45770351 None:intergenic 55.0%
CTCCGCTATAGCAGCTGAAG+CGG + chr7_4:45770758-45770777 Msa1157030:intron 55.0%
AGCGGTGCGGTATGAGATAG+CGG - chr7_4:45770795-45770814 None:intergenic 55.0%
GGCCGCTTCAGCTGCTATAG+CGG - chr7_4:45770763-45770782 None:intergenic 60.0%
! TTGCGGATTGCGGCGCGTAG+CGG + chr7_4:45769986-45770005 Msa1157030:intron 65.0%
GGCCGCTATAGCGCCGCTAT+CGG + chr7_4:45770779-45770798 Msa1157030:intron 65.0%
! GGCCGATAGCGGCGCTATAG+CGG - chr7_4:45770862-45770881 None:intergenic 65.0%
TGTCGCCGCTACGCTACGCG+CGG + chr7_4:45770836-45770855 Msa1157030:intron 70.0%
AGCGGCCGCGCGTAGCGTAG+CGG - chr7_4:45770844-45770863 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 45767546 45771428 45767546 ID=Msa1157030;Name=Msa1157030
chr7_4 mRNA 45767546 45771428 45767546 ID=Msa1157030-mRNA-1;Parent=Msa1157030;Name=Msa1157030-mRNA-1;_AED=0.17;_eAED=0.17;_QI=154|0.85|0.87|1|0.57|0.37|8|213|196
chr7_4 exon 45767546 45767695 45767546 ID=Msa1157030-mRNA-1:exon:11880;Parent=Msa1157030-mRNA-1
chr7_4 exon 45767792 45768023 45767792 ID=Msa1157030-mRNA-1:exon:11881;Parent=Msa1157030-mRNA-1
chr7_4 exon 45768191 45768275 45768191 ID=Msa1157030-mRNA-1:exon:11882;Parent=Msa1157030-mRNA-1
chr7_4 exon 45768378 45768402 45768378 ID=Msa1157030-mRNA-1:exon:11883;Parent=Msa1157030-mRNA-1
chr7_4 exon 45769535 45769593 45769535 ID=Msa1157030-mRNA-1:exon:11884;Parent=Msa1157030-mRNA-1
chr7_4 exon 45769684 45769760 45769684 ID=Msa1157030-mRNA-1:exon:11885;Parent=Msa1157030-mRNA-1
chr7_4 exon 45771066 45771262 45771066 ID=Msa1157030-mRNA-1:exon:11886;Parent=Msa1157030-mRNA-1
chr7_4 exon 45771296 45771428 45771296 ID=Msa1157030-mRNA-1:exon:11887;Parent=Msa1157030-mRNA-1
chr7_4 five_prime_UTR 45767546 45767695 45767546 ID=Msa1157030-mRNA-1:five_prime_utr;Parent=Msa1157030-mRNA-1
chr7_4 five_prime_UTR 45767792 45767795 45767792 ID=Msa1157030-mRNA-1:five_prime_utr;Parent=Msa1157030-mRNA-1
chr7_4 CDS 45767796 45768023 45767796 ID=Msa1157030-mRNA-1:cds;Parent=Msa1157030-mRNA-1
chr7_4 CDS 45768191 45768275 45768191 ID=Msa1157030-mRNA-1:cds;Parent=Msa1157030-mRNA-1
chr7_4 CDS 45768378 45768402 45768378 ID=Msa1157030-mRNA-1:cds;Parent=Msa1157030-mRNA-1
chr7_4 CDS 45769535 45769593 45769535 ID=Msa1157030-mRNA-1:cds;Parent=Msa1157030-mRNA-1
chr7_4 CDS 45769684 45769760 45769684 ID=Msa1157030-mRNA-1:cds;Parent=Msa1157030-mRNA-1
chr7_4 CDS 45771066 45771182 45771066 ID=Msa1157030-mRNA-1:cds;Parent=Msa1157030-mRNA-1
chr7_4 three_prime_UTR 45771183 45771262 45771183 ID=Msa1157030-mRNA-1:three_prime_utr;Parent=Msa1157030-mRNA-1
chr7_4 three_prime_UTR 45771296 45771428 45771296 ID=Msa1157030-mRNA-1:three_prime_utr;Parent=Msa1157030-mRNA-1
Gene Sequence

>Msa1157030

ATGTTGCATCTTGCATCTTCTACAAGTCCAACCTTATCTTTAACCTATCCCAGAAGAAGGAACTTTCATTATCCTCGTTATTCACTTAAAACATCATCATCATTTTCCGTTCGTTGTTCGGTTCCACACACAAATAACAATGGAGATACTAATAAAGTGGAATATACTCCTTGGCTTGTTGTTGGCTTGGGTAACCCTGGAAATAAATACCATGGCACTAGACACAATGTTGGATTTGAAATAATTGACAGTCTTTCTCAGTCAGAAGGTATTCTGATGAATACAATACAGTCAAAAGCCTTGATTGGAATAGGTTCTATAGGAGAAGTACCAGTTTTATTGAAAAATGTGATTGGCCATTTGGATGGTTCTCGTGATTTTCCTCGACTTGCAATCGGAATCGGAAACCCTCCTGGAACTATGGATTTAAGAGCATTTCTTCTACAAAAGTTCAGTTCAGTGGAAAGAAAGCAGGTTGATGAGTCATTGGAGCAAGGAGTTCAAGCTGTTAAGACCTTAGTGCTCAATGGGTTTAACCATCATGTCAATAGATTCAATTTAGGGCAAAAATACAAGTACAATAAAGTTTAA

Protein sequence

>Msa1157030

MLHLASSTSPTLSLTYPRRRNFHYPRYSLKTSSSFSVRCSVPHTNNNGDTNKVEYTPWLVVGLGNPGNKYHGTRHNVGFEIIDSLSQSEGILMNTIQSKALIGIGSIGEVPVLLKNVIGHLDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQGVQAVKTLVLNGFNHHVNRFNLGQKYKYNKV*