AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1403700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403700 MtrunA17_Chr1g0150061 98.305 236 4 0 1 236 1 236 4.69e-172 473
Msa1403700 MtrunA17_Chr8g0386721 72.289 166 46 0 71 236 2 167 1.17e-86 254
Msa1403700 MtrunA17_Chr8g0391921 66.667 162 54 0 75 236 63 224 6.83e-79 236
Msa1403700 MtrunA17_Chr7g0259611 62.424 165 62 0 71 235 4 168 4.14e-76 227
Msa1403700 MtrunA17_Chr8g0386731 63.750 160 58 0 77 236 12 171 2.53e-73 220
Msa1403700 MtrunA17_Chr1g0185791 53.659 164 75 1 72 234 5 168 2.09e-63 195
Msa1403700 MtrunA17_Chr5g0397561 56.250 160 69 1 77 235 10 169 7.52e-61 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1403700 AT2G25080.1 69.863 219 65 1 18 236 19 236 1.50e-109 315
Msa1403700 AT4G31870.1 67.532 231 74 1 6 236 4 233 4.92e-106 306
Msa1403700 AT4G11600.1 74.214 159 41 0 77 235 71 229 3.67e-85 253
Msa1403700 AT2G43350.2 68.553 159 50 0 78 236 47 205 6.36e-78 233
Msa1403700 AT2G43350.1 68.553 159 50 0 78 236 47 205 6.36e-78 233
Msa1403700 AT2G31570.1 67.296 159 52 0 77 235 7 165 3.56e-77 230
Msa1403700 AT1G63460.1 60.759 158 62 0 77 234 7 164 8.90e-73 219
Msa1403700 AT3G63080.1 61.146 157 61 0 79 235 14 170 2.21e-68 208
Msa1403700 AT2G48150.1 56.790 162 70 0 73 234 6 167 3.62e-66 202
Msa1403700 AT2G48150.2 58.865 141 58 0 94 234 1 141 2.07e-59 184
Msa1403700 AT4G31870.2 49.618 131 65 1 6 136 4 133 1.15e-30 112

Find 51 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAACCTTATCGAAAAT+TGG 0.195624 tig0022974:+62792 None:intergenic
AACTGTACTTCCAAAATTAT+TGG 0.223112 tig0022974:+65849 None:intergenic
GTAGAACAGGTTGATGTAAA+TGG 0.227839 tig0022974:-62707 Msa1403700:intron
CTGAAATTTAACGAAAATTC+TGG 0.260514 tig0022974:+62023 None:intergenic
GCTTTCCCTTGCAATCAATT+TGG 0.263308 tig0022974:-62882 Msa1403700:CDS
CTTGACAGTAAAATCATAAA+TGG 0.263502 tig0022974:+65564 None:intergenic
ACAGTCTCTGCCACACAAAA+TGG 0.310443 tig0022974:-65815 Msa1403700:exon
TACTTGCTGCGTGAAAATTT+AGG 0.333296 tig0022974:-62221 Msa1403700:exon
AAAGGGAAAGTGTTCATATA+TGG 0.355645 tig0022974:-62046 Msa1403700:three_prime_UTR
TTCACGCAGCAAGTAACTTC+TGG 0.359704 tig0022974:+62229 None:intergenic
TCTATAGTGTAGTAGTGAAT+AGG 0.364533 tig0022974:+62101 None:intergenic
CAGTTTCTGAAGTCAAGTTC+TGG 0.365037 tig0022974:-62662 Msa1403700:CDS
GACTTCAGAAACTGGTATAC+TGG 0.374167 tig0022974:+62671 None:intergenic
TTAATTTCTTCATTTGATCC+AGG 0.410664 tig0022974:+62849 None:intergenic
TGGTATACTGGAGCAGTAAA+TGG 0.415807 tig0022974:+62683 None:intergenic
TTAGACTTCAAAACAGCCTT+AGG 0.415949 tig0022974:+65625 None:intergenic
CAGAACTTGACTTCAGAAAC+TGG 0.419102 tig0022974:+62663 None:intergenic
GTACCATGCTTTATCACTAA+AGG 0.425930 tig0022974:-62064 Msa1403700:three_prime_UTR
ATTTATATTCAAAAGTTTGA+AGG 0.429700 tig0022974:+61968 None:intergenic
TACCATGCTTTATCACTAAA+GGG 0.451711 tig0022974:-62063 Msa1403700:three_prime_UTR
TAACATACCTCAATTTGAAA+AGG 0.452584 tig0022974:+62545 None:intergenic
TTGCAATCAATTTGGCATGC+AGG 0.453941 tig0022974:-62874 Msa1403700:CDS
ATTTGAAAAGGAGAGGTTGT+TGG 0.461689 tig0022974:+62557 None:intergenic
CAATTTGGCATGCAGGAGCC+TGG 0.464234 tig0022974:-62867 Msa1403700:CDS
ACAAAAGGCAAAGAAATTGA+AGG 0.466437 tig0022974:+65721 None:intergenic
TTCCCCTTGAATTTGCTAAG+AGG 0.483787 tig0022974:+64786 None:intergenic
TGTGCCTCTTAGCAAATTCA+AGG 0.492645 tig0022974:-64790 Msa1403700:CDS
GCCACACAAAATGGTTTCCA+TGG 0.508212 tig0022974:-65806 Msa1403700:exon
TGAAAAGGAGAGGTTGTTGG+TGG 0.511106 tig0022974:+62560 None:intergenic
AAGAGGTGTGAAGAAGGTTG+TGG 0.519675 tig0022974:+65777 None:intergenic
TGGCAGAGACTGTGAATTGA+TGG 0.528046 tig0022974:+65825 None:intergenic
TGCATGCCAAATTGATTGCA+AGG 0.530005 tig0022974:+62876 None:intergenic
TTAAGAAATTTGCTTGCACT+AGG 0.553262 tig0022974:-62830 Msa1403700:CDS
ATCAGAGGCATGCTTGTACA+AGG 0.558429 tig0022974:-62188 Msa1403700:three_prime_UTR
GAAAAGGAGAGGTTGTTGGT+GGG 0.561717 tig0022974:+62561 None:intergenic
TTAGGAAAATCGAAAGAGGT+TGG 0.563898 tig0022974:+65643 None:intergenic
TTCCCTTTAGTGATAAAGCA+TGG 0.565314 tig0022974:+62061 None:intergenic
TACCTCAATTTGAAAAGGAG+AGG 0.573842 tig0022974:+62550 None:intergenic
GAAGGTTGTGGAAGAAGCCA+TGG 0.574467 tig0022974:+65789 None:intergenic
TTCTGAAGTCAAGTTCTGGA+GGG 0.576508 tig0022974:-62658 Msa1403700:CDS
TCTTAGCAAATTCAAGGGGA+AGG 0.578922 tig0022974:-64784 Msa1403700:CDS
TTGTCAATGTTGCTTCAAGA+TGG 0.580677 tig0022974:-64752 Msa1403700:intron
TTTCTGAAGTCAAGTTCTGG+AGG 0.598538 tig0022974:-62659 Msa1403700:CDS
GTGCCTCTTAGCAAATTCAA+GGG 0.601868 tig0022974:-64789 Msa1403700:CDS
AGCCTTAGGAAAATCGAAAG+AGG 0.607348 tig0022974:+65639 None:intergenic
GCATGCCAAATTGATTGCAA+GGG 0.608481 tig0022974:+62877 None:intergenic
ATTGTGAAGAGGTGTGAAGA+AGG 0.611184 tig0022974:+65771 None:intergenic
GCTTGATTGAAATTGTGAAG+AGG 0.664846 tig0022974:+65760 None:intergenic
TGCCTCTTAGCAAATTCAAG+GGG 0.679239 tig0022974:-64788 Msa1403700:CDS
TTAGGAATGAGCAAAATCAG+AGG 0.683872 tig0022974:-62203 Msa1403700:three_prime_UTR
TTTGACATCATCAAACTACA+CGG 0.712985 tig0022974:-64115 Msa1403700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAAAATAGAAG+GGG - tig0022974:63524-63543 Msa1403700:intron 10.0%
!!! ATTTCTTATATTTTTTATCA+TGG - tig0022974:63783-63802 Msa1403700:intron 10.0%
!!! GATAATTTGTTAATATGTAT+AGG - tig0022974:62328-62347 Msa1403700:intron 15.0%
!!! TTGTTTTTGTTTTTGTTTTT+TGG - tig0022974:62672-62691 Msa1403700:CDS 15.0%
!!! TTTTCTTCAATTCTAAAAAT+AGG + tig0022974:62942-62961 None:intergenic 15.0%
!! ATTTAAAAGATGTTATTATG+TGG - tig0022974:62970-62989 Msa1403700:intron 15.0%
!! ATTACAAATGAAAAAAAGAA+GGG + tig0022974:63112-63131 None:intergenic 15.0%
!!! TATGAAAATTTTAAAGACAA+AGG - tig0022974:63727-63746 Msa1403700:intron 15.0%
!! AACATAAAAAGTGAAAAATT+AGG - tig0022974:64454-64473 Msa1403700:intron 15.0%
!!! GATTAAGCAAAAAATATTTT+AGG + tig0022974:65520-65539 None:intergenic 15.0%
!! ATTTATATTCAAAAGTTTGA+AGG + tig0022974:65840-65859 None:intergenic 15.0%
!! AACAATTTATTTGTAGCTTA+TGG - tig0022974:62364-62383 Msa1403700:intron 20.0%
!! CATTACAAATGAAAAAAAGA+AGG + tig0022974:63113-63132 None:intergenic 20.0%
!!! TTTTTTCATTTGTAATGTTC+AGG - tig0022974:63116-63135 Msa1403700:intron 20.0%
!!! AAACAAATAGTTCTAAATTG+CGG - tig0022974:63182-63201 Msa1403700:intron 20.0%
!!! AATTTTGTATAACAAACTAG+AGG + tig0022974:63415-63434 None:intergenic 20.0%
!! TTGTTATACAAAATTAGAGT+CGG - tig0022974:63420-63439 Msa1403700:intron 20.0%
!!! ATATTTTTTATCATGGCTAT+TGG - tig0022974:63790-63809 Msa1403700:intron 20.0%
!!! TTATTCTGAATATCTACTTT+TGG - tig0022974:63845-63864 Msa1403700:intron 20.0%
!!! AAACACATGCATTTTATTTT+AGG + tig0022974:64275-64294 None:intergenic 20.0%
!! ATAATATCCTAAATTGCAAA+CGG + tig0022974:64353-64372 None:intergenic 20.0%
!! TAAAAAGTGAAAAATTAGGT+AGG - tig0022974:64458-64477 Msa1403700:intron 20.0%
!! AAAAAGTGAAAAATTAGGTA+GGG - tig0022974:64459-64478 Msa1403700:intron 20.0%
!!! CTTGTTTTGTTTTGTAATTT+GGG - tig0022974:64526-64545 Msa1403700:intron 20.0%
!!! TTGTTTTGTTTTGTAATTTG+GGG - tig0022974:64527-64546 Msa1403700:intron 20.0%
!! CAATGAATTATTAACTAGTT+AGG - tig0022974:65329-65348 Msa1403700:intron 20.0%
!! GTGGATAATGCAATATTTTT+GGG + tig0022974:61927-61946 None:intergenic 25.0%
!! TGTGGATAATGCAATATTTT+TGG + tig0022974:61928-61947 None:intergenic 25.0%
!!! AAATTATTGGTGTGTTTTTG+TGG + tig0022974:61946-61965 None:intergenic 25.0%
!! CAAAAACACACCAATAATTT+TGG - tig0022974:61946-61965 Msa1403700:three_prime_UTR 25.0%
! AACTGTACTTCCAAAATTAT+TGG + tig0022974:61959-61978 None:intergenic 25.0%
!!! AAATCACCTTTTTTTCAACA+TGG - tig0022974:62129-62148 Msa1403700:three_prime_UTR 25.0%
! CTTGACAGTAAAATCATAAA+TGG + tig0022974:62244-62263 None:intergenic 25.0%
!! CATTTATGATTTTACTGTCA+AGG - tig0022974:62242-62261 Msa1403700:intron 25.0%
!!! TAATATGTATAGGTCTTGTT+TGG - tig0022974:62338-62357 Msa1403700:intron 25.0%
! TATTTGTAGCTTATGGTATA+AGG - tig0022974:62371-62390 Msa1403700:intron 25.0%
! ATTTGTAGCTTATGGTATAA+GGG - tig0022974:62372-62391 Msa1403700:intron 25.0%
!!! TGTTGTTTTCATAAGCTATT+TGG - tig0022974:62458-62477 Msa1403700:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+GGG - tig0022974:62459-62478 Msa1403700:intron 25.0%
! CGTAAGTTGTTTATTATGAT+AGG - tig0022974:62524-62543 Msa1403700:intron 25.0%
!! GTTTATTATGATAGGTTTTG+TGG - tig0022974:62532-62551 Msa1403700:intron 25.0%
! AAAAAAATAGCCAATCCAAA+CGG + tig0022974:62652-62671 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG - tig0022974:62726-62745 Msa1403700:intron 25.0%
!!! TATTGACTTTATATTTGCGT+TGG - tig0022974:63086-63105 Msa1403700:intron 25.0%
! TATTCAAGAACAGTAAAACA+GGG + tig0022974:63294-63313 None:intergenic 25.0%
! ATATTCAAGAACAGTAAAAC+AGG + tig0022974:63295-63314 None:intergenic 25.0%
! AATTTGATGTCTTACATTAG+AGG + tig0022974:63375-63394 None:intergenic 25.0%
!! ATTGATTGATTTCCTTTGAA+TGG - tig0022974:63661-63680 Msa1403700:intron 25.0%
!! GAAATCTTTATGTTTTGTGT+TGG - tig0022974:63867-63886 Msa1403700:intron 25.0%
!!! GTTATTGGTATTTTTAGATG+TGG - tig0022974:63949-63968 Msa1403700:intron 25.0%
! TATTCGAAACATTTCTCTAT+AGG - tig0022974:64047-64066 Msa1403700:intron 25.0%
! TTTCCATATAAAGATACGTT+TGG + tig0022974:64073-64092 None:intergenic 25.0%
! TCAAAATGTGTTTGTCAATT+GGG + tig0022974:64168-64187 None:intergenic 25.0%
! TTCAAAATGTGTTTGTCAAT+TGG + tig0022974:64169-64188 None:intergenic 25.0%
!!! ATAAAATGCATGTGTTTTTG+TGG - tig0022974:64278-64297 Msa1403700:intron 25.0%
!!! TAAAATGCATGTGTTTTTGT+GGG - tig0022974:64279-64298 Msa1403700:intron 25.0%
! CCAAATTACAAAACAAAACA+AGG + tig0022974:64528-64547 None:intergenic 25.0%
!!! CCTTGTTTTGTTTTGTAATT+TGG - tig0022974:64525-64544 Msa1403700:intron 25.0%
!!! TTGCATTTTGATTACAATGT+TGG - tig0022974:64642-64661 Msa1403700:intron 25.0%
! ACAAGGAAATTAAAAATGTG+TGG + tig0022974:64874-64893 None:intergenic 25.0%
! TTAATTTCTTCATTTGATCC+AGG + tig0022974:64959-64978 None:intergenic 25.0%
!! AGAATTTCCAATTTTCGATA+AGG - tig0022974:65006-65025 Msa1403700:intron 25.0%
! TATCAAACCTTATCGAAAAT+TGG + tig0022974:65016-65035 None:intergenic 25.0%
! AAATTCTTGGTCGATAAAAA+TGG - tig0022974:65203-65222 Msa1403700:intron 25.0%
! TAACATACCTCAATTTGAAA+AGG + tig0022974:65263-65282 None:intergenic 25.0%
!!! AGTCTAGCTTCTAATTTTTA+TGG - tig0022974:65303-65322 Msa1403700:intron 25.0%
!! AGTATGTCAATATGATTTTC+CGG - tig0022974:65362-65381 Msa1403700:intron 25.0%
! TGAGAGTAATATATCTTTAG+TGG - tig0022974:65398-65417 Msa1403700:intron 25.0%
! TAAGCTGTATTTGATTACAT+CGG - tig0022974:65474-65493 Msa1403700:intron 25.0%
! CTGAAATTTAACGAAAATTC+TGG + tig0022974:65785-65804 None:intergenic 25.0%
ACAAAAGGCAAAGAAATTGA+AGG + tig0022974:62087-62106 None:intergenic 30.0%
! GCAATTGAGGATTTTACAAA+AGG + tig0022974:62102-62121 None:intergenic 30.0%
!! TGATTTTGAAGAAGCAATTG+AGG + tig0022974:62115-62134 None:intergenic 30.0%
GAAAAGCCATGTTGAAAAAA+AGG + tig0022974:62138-62157 None:intergenic 30.0%
TAAGGGTTTATCATGATAAG+TGG - tig0022974:62389-62408 Msa1403700:intron 30.0%
ATGATAAGTGGTTATGAATG+AGG - tig0022974:62401-62420 Msa1403700:intron 30.0%
! TGAATGAGGTGTTTATACAA+CGG - tig0022974:62415-62434 Msa1403700:intron 30.0%
AAAAAATAGCCAATCCAAAC+GGG + tig0022974:62651-62670 None:intergenic 30.0%
!!! CACATAGTTTTGTTGAAGAA+GGG - tig0022974:62914-62933 Msa1403700:intron 30.0%
TTTCATTTGTAATGTTCAGG+AGG - tig0022974:63119-63138 Msa1403700:intron 30.0%
TTCATTTGTAATGTTCAGGA+GGG - tig0022974:63120-63139 Msa1403700:intron 30.0%
! CTAAATCAAGAGCATGAATT+TGG - tig0022974:63466-63485 Msa1403700:intron 30.0%
! TTTCTCCTGCTATTTGAAAA+GGG - tig0022974:63586-63605 Msa1403700:intron 30.0%
GAAAGTTATGTCAAAGTTTC+TGG - tig0022974:63624-63643 Msa1403700:intron 30.0%
TTTGACATCATCAAACTACA+CGG - tig0022974:63690-63709 Msa1403700:intron 30.0%
TAGAGAAATGTTTCGAATAG+AGG + tig0022974:64046-64065 None:intergenic 30.0%
ATCTTTATATGGAAAGCTGT+TGG - tig0022974:64078-64097 Msa1403700:intron 30.0%
AAAATGTGTTTGTCAATTGG+GGG + tig0022974:64166-64185 None:intergenic 30.0%
CAAAATGTGTTTGTCAATTG+GGG + tig0022974:64167-64186 None:intergenic 30.0%
! AACACATTTTGAATCTTGAC+TGG - tig0022974:64176-64195 Msa1403700:intron 30.0%
!! ATAGGATTAGCTTCTGTATA+AGG - tig0022974:64235-64254 Msa1403700:intron 30.0%
!!! ATTTTATTTTAGGTTTCCCC+AGG + tig0022974:64265-64284 None:intergenic 30.0%
!!! TTTTTGGGCAGTTACTTTTA+GGG + tig0022974:64613-64632 None:intergenic 30.0%
ACTAACGTAAGTAGTATATC+AGG - tig0022974:64694-64713 Msa1403700:intron 30.0%
CTAACGTAAGTAGTATATCA+GGG - tig0022974:64695-64714 Msa1403700:intron 30.0%
AGTATATCAGGGTTACTATA+CGG - tig0022974:64706-64725 Msa1403700:intron 30.0%
!! TTGTTGTTTCTCTTTGAACA+TGG - tig0022974:64810-64829 Msa1403700:CDS 30.0%
! TTAAGAAATTTGCTTGCACT+AGG - tig0022974:64975-64994 Msa1403700:intron 30.0%
TGTAATCTATTCTGAACTAC+TGG + tig0022974:65051-65070 None:intergenic 30.0%
TTCTACAAAACTTCAGTACT+TGG + tig0022974:65084-65103 None:intergenic 30.0%
!! GTGGAATTTTGAGAAATTCT+TGG - tig0022974:65190-65209 Msa1403700:intron 30.0%
! CTAGCTTCTAATTTTTATGG+TGG - tig0022974:65306-65325 Msa1403700:intron 30.0%
TCTATAGTGTAGTAGTGAAT+AGG + tig0022974:65707-65726 None:intergenic 30.0%
TACCATGCTTTATCACTAAA+GGG - tig0022974:65742-65761 Msa1403700:CDS 30.0%
!! AAAGGGAAAGTGTTCATATA+TGG - tig0022974:65759-65778 Msa1403700:CDS 30.0%
GCTTGATTGAAATTGTGAAG+AGG + tig0022974:62048-62067 None:intergenic 35.0%
TTAGGAAAATCGAAAGAGGT+TGG + tig0022974:62165-62184 None:intergenic 35.0%
! AACCTCTTTCGATTTTCCTA+AGG - tig0022974:62164-62183 Msa1403700:three_prime_UTR 35.0%
TTAGACTTCAAAACAGCCTT+AGG + tig0022974:62183-62202 None:intergenic 35.0%
!!! GCACATAGTTTTGTTGAAGA+AGG - tig0022974:62913-62932 Msa1403700:intron 35.0%
AAGATGTTATTATGTGGTGC+AGG - tig0022974:62976-62995 Msa1403700:intron 35.0%
! TTGTCAATGTTGCTTCAAGA+TGG - tig0022974:63053-63072 Msa1403700:intron 35.0%
GCATACTTAATACCACTCAT+AGG + tig0022974:63160-63179 None:intergenic 35.0%
!!! AGTTTTAGAAGTTTACGCTG+TGG - tig0022974:63229-63248 Msa1403700:intron 35.0%
GCTCTATTTAAGCATACTTG+AGG - tig0022974:63550-63569 Msa1403700:intron 35.0%
! GTTTCTCCTGCTATTTGAAA+AGG - tig0022974:63585-63604 Msa1403700:intron 35.0%
! ATTAGCCCTTTTCAAATAGC+AGG + tig0022974:63594-63613 None:intergenic 35.0%
! AGACAAAGGTACGTTACTTA+TGG - tig0022974:63741-63760 Msa1403700:intron 35.0%
GTTGGATCCTGTATAAGATT+AGG - tig0022974:63885-63904 Msa1403700:intron 35.0%
CTTCTCTCCTAATCTTATAC+AGG + tig0022974:63895-63914 None:intergenic 35.0%
TGTGAATGAAGTTAACCAAC+TGG - tig0022974:63988-64007 Msa1403700:intron 35.0%
GTGAATGAAGTTAACCAACT+GGG - tig0022974:63989-64008 Msa1403700:intron 35.0%
AGGCCAAACGTATCTTTATA+TGG - tig0022974:64067-64086 Msa1403700:intron 35.0%
!! TGCATGTCCATTTTAACCAA+CGG - tig0022974:64114-64133 Msa1403700:CDS 35.0%
AAATGTGTTTGTCAATTGGG+GGG + tig0022974:64165-64184 None:intergenic 35.0%
TGTCTAATCGTGTCTCAAAT+AGG - tig0022974:64217-64236 Msa1403700:intron 35.0%
CTTCTGTATAAGGATATCCT+GGG - tig0022974:64245-64264 Msa1403700:intron 35.0%
TTCTGTATAAGGATATCCTG+GGG - tig0022974:64246-64265 Msa1403700:intron 35.0%
ATTTCCACCGTTTGCAATTT+AGG - tig0022974:64343-64362 Msa1403700:intron 35.0%
ATATCCTAAATTGCAAACGG+TGG + tig0022974:64350-64369 None:intergenic 35.0%
TAAATGCCAAACAGAAAGCA+GGG + tig0022974:64408-64427 None:intergenic 35.0%
TTAAATGCCAAACAGAAAGC+AGG + tig0022974:64409-64428 None:intergenic 35.0%
GCTTTCTGTTTGGCATTTAA+CGG - tig0022974:64409-64428 Msa1403700:intron 35.0%
AAGTGAACTAGTGAAGAAGA+TGG - tig0022974:64486-64505 Msa1403700:intron 35.0%
!!! TTTTGGGCAGTTACTTTTAG+GGG + tig0022974:64612-64631 None:intergenic 35.0%
!!! GTTTTTGGGCAGTTACTTTT+AGG + tig0022974:64614-64633 None:intergenic 35.0%
! ATGCAACTATGCACGTTTTT+GGG + tig0022974:64628-64647 None:intergenic 35.0%
! AATGCAACTATGCACGTTTT+TGG + tig0022974:64629-64648 None:intergenic 35.0%
GTATATCAGGGTTACTATAC+GGG - tig0022974:64707-64726 Msa1403700:intron 35.0%
!! GTACTGAAGTTTTGTAGAAC+AGG - tig0022974:65085-65104 Msa1403700:intron 35.0%
!! GTAGAACAGGTTGATGTAAA+TGG - tig0022974:65098-65117 Msa1403700:intron 35.0%
ATTTGAAAAGGAGAGGTTGT+TGG + tig0022974:65251-65270 None:intergenic 35.0%
! AACCTCTCCTTTTCAAATTG+AGG - tig0022974:65253-65272 Msa1403700:intron 35.0%
TACCTCAATTTGAAAAGGAG+AGG + tig0022974:65258-65277 None:intergenic 35.0%
! AGCTAGACTTTTGATGTTGT+TGG + tig0022974:65292-65311 None:intergenic 35.0%
! CTCTCATCTTCAATTTTGTC+CGG + tig0022974:65384-65403 None:intergenic 35.0%
CTTCTGCAAAAATGTGAAAC+GGG + tig0022974:65551-65570 None:intergenic 35.0%
CCTTCTGCAAAAATGTGAAA+CGG + tig0022974:65552-65571 None:intergenic 35.0%
! TACTTGCTGCGTGAAAATTT+AGG - tig0022974:65584-65603 Msa1403700:CDS 35.0%
TTAGGAATGAGCAAAATCAG+AGG - tig0022974:65602-65621 Msa1403700:CDS 35.0%
GTACCATGCTTTATCACTAA+AGG - tig0022974:65741-65760 Msa1403700:CDS 35.0%
TTCCCTTTAGTGATAAAGCA+TGG + tig0022974:65747-65766 None:intergenic 35.0%
! ATTGTGAAGAGGTGTGAAGA+AGG + tig0022974:62037-62056 None:intergenic 40.0%
AGCCTTAGGAAAATCGAAAG+AGG + tig0022974:62169-62188 None:intergenic 40.0%
!! GCTGTTTTCGTAAGCTATCT+TGG - tig0022974:62616-62635 Msa1403700:CDS 40.0%
GTAAGCTATCTTGGAGAACA+GGG - tig0022974:62625-62644 Msa1403700:CDS 40.0%
TAAACATTGCGAGACTGTCT+GGG + tig0022974:62856-62875 None:intergenic 40.0%
ATAAACATTGCGAGACTGTC+TGG + tig0022974:62857-62876 None:intergenic 40.0%
TGCAGATAAGCCAATCGAAA+CGG - tig0022974:62890-62909 Msa1403700:CDS 40.0%
TGTGCCTCTTAGCAAATTCA+AGG - tig0022974:63015-63034 Msa1403700:intron 40.0%
GTGCCTCTTAGCAAATTCAA+GGG - tig0022974:63016-63035 Msa1403700:intron 40.0%
TGCCTCTTAGCAAATTCAAG+GGG - tig0022974:63017-63036 Msa1403700:intron 40.0%
!! TTCCCCTTGAATTTGCTAAG+AGG + tig0022974:63022-63041 None:intergenic 40.0%
TCTTAGCAAATTCAAGGGGA+AGG - tig0022974:63021-63040 Msa1403700:intron 40.0%
TGTAATGTTCAGGAGGGATT+TGG - tig0022974:63126-63145 Msa1403700:intron 40.0%
TTAGAGGAGTGAGAAAGTGA+TGG + tig0022974:63359-63378 None:intergenic 40.0%
! TAGAGGTGTGTGTAACTAAG+GGG + tig0022974:63398-63417 None:intergenic 40.0%
! CTAGAGGTGTGTGTAACTAA+GGG + tig0022974:63399-63418 None:intergenic 40.0%
! ACTAGAGGTGTGTGTAACTA+AGG + tig0022974:63400-63419 None:intergenic 40.0%
CAAAATTAGAGTCGGTGACT+TGG - tig0022974:63428-63447 Msa1403700:intron 40.0%
! TTTGGTGCATCCAACAAGTT+AGG - tig0022974:63484-63503 Msa1403700:intron 40.0%
TTGGTGCATCCAACAAGTTA+GGG - tig0022974:63485-63504 Msa1403700:intron 40.0%
TGATTTCCTTTGAATGGCAG+CGG - tig0022974:63667-63686 Msa1403700:intron 40.0%
ATTGGTCACTACCTGTTATC+TGG - tig0022974:63808-63827 Msa1403700:intron 40.0%
AGCTACAAGATCCAGATAAC+AGG + tig0022974:63822-63841 None:intergenic 40.0%
CTGAGTTTCAATAGGAAGGA+AGG + tig0022974:63923-63942 None:intergenic 40.0%
CTTCCTTCCTATTGAAACTC+AGG - tig0022974:63921-63940 Msa1403700:intron 40.0%
ATGCCTGAGTTTCAATAGGA+AGG + tig0022974:63927-63946 None:intergenic 40.0%
TCCTATTGAAACTCAGGCAT+AGG - tig0022974:63927-63946 Msa1403700:intron 40.0%
ACCTATGCCTGAGTTTCAAT+AGG + tig0022974:63931-63950 None:intergenic 40.0%
GAAACTCAGGCATAGGTTAT+TGG - tig0022974:63934-63953 Msa1403700:intron 40.0%
CCATATCATCATATCCCAGT+TGG + tig0022974:64006-64025 None:intergenic 40.0%
CCAACTGGGATATGATGATA+TGG - tig0022974:64003-64022 Msa1403700:intron 40.0%
!! GCATGTCCATTTTAACCAAC+GGG - tig0022974:64115-64134 Msa1403700:CDS 40.0%
!! CATGTCCATTTTAACCAACG+GGG - tig0022974:64116-64135 Msa1403700:CDS 40.0%
GCTTCTGTATAAGGATATCC+TGG - tig0022974:64244-64263 Msa1403700:intron 40.0%
CGGTGGAAATAAAGCAAGAT+AGG + tig0022974:64333-64352 None:intergenic 40.0%
AAATGCCAAACAGAAAGCAG+GGG + tig0022974:64407-64426 None:intergenic 40.0%
! ATTTAACGGTGTGCTTGTTG+TGG - tig0022974:64423-64442 Msa1403700:intron 40.0%
!!! TTTGGGCAGTTACTTTTAGG+GGG + tig0022974:64611-64630 None:intergenic 40.0%
! GGTGCTGAAGAATTTGCAAA+AGG - tig0022974:64663-64682 Msa1403700:intron 40.0%
TCGCTTTCGAATGTATCGTT+TGG + tig0022974:64770-64789 None:intergenic 40.0%
! TCCTTGTGCATTTTCTTTCC+AGG - tig0022974:64887-64906 Msa1403700:intron 40.0%
ACCTGGAAAGAAAATGCACA+AGG + tig0022974:64891-64910 None:intergenic 40.0%
! GTGCATTTTCTTTCCAGGTT+TGG - tig0022974:64892-64911 Msa1403700:intron 40.0%
AAAGCTAGAATCTCCAAACC+TGG + tig0022974:64908-64927 None:intergenic 40.0%
GCTTTCCCTTGCAATCAATT+TGG - tig0022974:64923-64942 Msa1403700:intron 40.0%
GCATGCCAAATTGATTGCAA+GGG + tig0022974:64931-64950 None:intergenic 40.0%
TGCATGCCAAATTGATTGCA+AGG + tig0022974:64932-64951 None:intergenic 40.0%
TTGCAATCAATTTGGCATGC+AGG - tig0022974:64931-64950 Msa1403700:intron 40.0%
TGGTATACTGGAGCAGTAAA+TGG + tig0022974:65125-65144 None:intergenic 40.0%
GACTTCAGAAACTGGTATAC+TGG + tig0022974:65137-65156 None:intergenic 40.0%
CAGAACTTGACTTCAGAAAC+TGG + tig0022974:65145-65164 None:intergenic 40.0%
!! CAGTTTCTGAAGTCAAGTTC+TGG - tig0022974:65143-65162 Msa1403700:intron 40.0%
!! TTTCTGAAGTCAAGTTCTGG+AGG - tig0022974:65146-65165 Msa1403700:intron 40.0%
!! TTCTGAAGTCAAGTTCTGGA+GGG - tig0022974:65147-65166 Msa1403700:intron 40.0%
!!! TCAAGTTCTGGAGGGTTTTT+CGG - tig0022974:65155-65174 Msa1403700:intron 40.0%
! TTTTCGGTGATCTTGTCAAG+TGG - tig0022974:65171-65190 Msa1403700:intron 40.0%
! CCGTTTCACATTTTTGCAGA+AGG - tig0022974:65549-65568 Msa1403700:intron 40.0%
TGGCAGAGACTGTGAATTGA+TGG + tig0022974:61983-62002 None:intergenic 45.0%
ACAGTCTCTGCCACACAAAA+TGG - tig0022974:61990-62009 Msa1403700:three_prime_UTR 45.0%
GCCACACAAAATGGTTTCCA+TGG - tig0022974:61999-62018 Msa1403700:three_prime_UTR 45.0%
! GCCATGGAAACCATTTTGTG+TGG + tig0022974:62003-62022 None:intergenic 45.0%
! AAGAGGTGTGAAGAAGGTTG+TGG + tig0022974:62031-62050 None:intergenic 45.0%
CGTAAGCTATCTTGGAGAAC+AGG - tig0022974:62624-62643 Msa1403700:CDS 45.0%
GCTTATCTGCACTCATCTAC+TGG + tig0022974:62881-62900 None:intergenic 45.0%
GCAGATAAGCCAATCGAAAC+GGG - tig0022974:62891-62910 Msa1403700:CDS 45.0%
AACTATGTGCCCGTTTCGAT+TGG + tig0022974:62903-62922 None:intergenic 45.0%
TTGGACTCACTTCCTATGAG+TGG - tig0022974:63145-63164 Msa1403700:intron 45.0%
TGGTATCACAACCACAGTTG+TGG - tig0022974:63249-63268 Msa1403700:intron 45.0%
AGGGATAAATGCGACAGATG+CGG + tig0022974:63275-63294 None:intergenic 45.0%
! GACTCAACACCCTAACTTGT+TGG + tig0022974:63497-63516 None:intergenic 45.0%
! CTCAACCCCGTTGGTTAAAA+TGG + tig0022974:64124-64143 None:intergenic 45.0%
TCATTCCCCTGCTTTCTGTT+TGG - tig0022974:64399-64418 Msa1403700:intron 45.0%
!!! TTGGGCAGTTACTTTTAGGG+GGG + tig0022974:64610-64629 None:intergenic 45.0%
GAAAAGGAGAGGTTGTTGGT+GGG + tig0022974:65247-65266 None:intergenic 45.0%
TGAAAAGGAGAGGTTGTTGG+TGG + tig0022974:65248-65267 None:intergenic 45.0%
TTCACGCAGCAAGTAACTTC+TGG + tig0022974:65579-65598 None:intergenic 45.0%
! ATCAGAGGCATGCTTGTACA+AGG - tig0022974:65617-65636 Msa1403700:CDS 45.0%
!! TTAAAAAAATAAAAAATAGA+AGG - tig0022974:63522-63541 Msa1403700:intron 5.0%
!! TAAAAAAATAAAAAATAGAA+GGG - tig0022974:63523-63542 Msa1403700:intron 5.0%
GAAGGTTGTGGAAGAAGCCA+TGG + tig0022974:62019-62038 None:intergenic 50.0%
GTCAAACCGCTGCCATTCAA+AGG + tig0022974:63676-63695 None:intergenic 50.0%
GAACATGAGTGAGCTCTTGC+TGG - tig0022974:64729-64748 Msa1403700:intron 50.0%
AGAACAGGGCCCGTTTGGAT+TGG - tig0022974:62639-62658 Msa1403700:CDS 55.0%
TCTGCTAGACTCAACCCCGT+TGG + tig0022974:64133-64152 None:intergenic 55.0%
!! CGGTGTGCTTGTTGTGGAGA+TGG - tig0022974:64429-64448 Msa1403700:intron 55.0%
CAATTTGGCATGCAGGAGCC+TGG - tig0022974:64938-64957 Msa1403700:intron 55.0%
CTTGGAGAACAGGGCCCGTT+TGG - tig0022974:62634-62653 Msa1403700:CDS 60.0%
GACAGATGCGGCCACAACTG+TGG + tig0022974:63263-63282 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0022974 gene 61918 65909 61918 ID=Msa1403700;Name=Msa1403700
tig0022974 mRNA 61918 65909 61918 ID=Msa1403700-mRNA-1;Parent=Msa1403700;Name=Msa1403700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91|1|1|1|1|1|6|312|236
tig0022974 exon 61918 62259 61918 ID=Msa1403700-mRNA-1:exon:19424;Parent=Msa1403700-mRNA-1
tig0022974 exon 62553 62720 62553 ID=Msa1403700-mRNA-1:exon:19423;Parent=Msa1403700-mRNA-1
tig0022974 exon 62800 62918 62800 ID=Msa1403700-mRNA-1:exon:19422;Parent=Msa1403700-mRNA-1
tig0022974 exon 64079 64140 64079 ID=Msa1403700-mRNA-1:exon:19421;Parent=Msa1403700-mRNA-1
tig0022974 exon 64753 64829 64753 ID=Msa1403700-mRNA-1:exon:19420;Parent=Msa1403700-mRNA-1
tig0022974 exon 65564 65909 65564 ID=Msa1403700-mRNA-1:exon:19419;Parent=Msa1403700-mRNA-1
tig0022974 five_prime_UTR 65819 65909 65819 ID=Msa1403700-mRNA-1:five_prime_utr;Parent=Msa1403700-mRNA-1
tig0022974 CDS 65564 65818 65564 ID=Msa1403700-mRNA-1:cds;Parent=Msa1403700-mRNA-1
tig0022974 CDS 64753 64829 64753 ID=Msa1403700-mRNA-1:cds;Parent=Msa1403700-mRNA-1
tig0022974 CDS 64079 64140 64079 ID=Msa1403700-mRNA-1:cds;Parent=Msa1403700-mRNA-1
tig0022974 CDS 62800 62918 62800 ID=Msa1403700-mRNA-1:cds;Parent=Msa1403700-mRNA-1
tig0022974 CDS 62553 62720 62553 ID=Msa1403700-mRNA-1:cds;Parent=Msa1403700-mRNA-1
tig0022974 CDS 62230 62259 62230 ID=Msa1403700-mRNA-1:cds;Parent=Msa1403700-mRNA-1
tig0022974 three_prime_UTR 61918 62229 61918 ID=Msa1403700-mRNA-1:three_prime_utr;Parent=Msa1403700-mRNA-1
Gene Sequence

>Msa1403700

ATGGTTTCCATGGCTTCTTCCACAACCTTCTTCACACCTCTTCACAATTTCAATCAAGCTAGAACAAACTCAACACCTTCAATTTCTTTGCCTTTTGTAAAATCCTCAATTGCTTCTTCAAAATCACCTTTTTTTCAACATGGCTTTTCTCAACCAACCTCTTTCGATTTTCCTAAGGCTGTTTTGAAGTCTAAGTCTTTCTCAGTCAACGCTAGAGCTGTTACTGATAAATCCATTTATGATTTTACTGTCAAGGATATTGATAAGAAAGATGTGCCTCTTAGCAAATTCAAGGGGAAGGTTCTTTTGATTGTCAATGTTGCTTCAAGATGCGGTTTGACATCATCAAACTACACGGAACTCTCACACTTGTATGAAAATTTTAAAGACAAAGGTTTGGAGATTCTAGCTTTCCCTTGCAATCAATTTGGCATGCAGGAGCCTGGATCAAATGAAGAAATTAAGAAATTTGCTTGCACTAGGTTCAAAGCAGAATTTCCAATTTTCGATAAGGTTGATGTAAATGGACCATTTACTGCTCCAGTATACCAGTTTCTGAAGTCAAGTTCTGGAGGGTTTTTCGGTGATCTTGTCAAGTGGAATTTTGAGAAATTCTTGGTCGATAAAAATGGAAAAGTTGTTGAACGATACCCACCAACAACCTCTCCTTTTCAAATTGAGAAGGATATCCAGAAGTTACTTGCTGCGTGA

Protein sequence

>Msa1403700

MVSMASSTTFFTPLHNFNQARTNSTPSISLPFVKSSIASSKSPFFQHGFSQPTSFDFPKAVLKSKSFSVNARAVTDKSIYDFTVKDIDKKDVPLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKDKGLEILAFPCNQFGMQEPGSNEEIKKFACTRFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDLVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA*