AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0766900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766900 MtrunA17_Chr5g0422401 91.579 95 8 0 1 95 112 206 3.73e-53 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0766900 AT1G26090.1 67.347 98 31 1 1 97 129 226 1.17e-37 131

Find 123 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTCCGCGTCACGTTAT+TGG 0.149734 5_2:+29317861 Msa0766900:three_prime_UTR
AAGACTTCTGTCTTGGAATT+TGG 0.162457 5_2:-29319806 None:intergenic
CAGGCTGGTGCTCAAGTTTC+AGG 0.171579 5_2:+29317896 Msa0766900:three_prime_UTR
CTTTCGAATGATTCTGGTTT+TGG 0.183397 5_2:-29317944 None:intergenic
CAATTCCGCGTCACGTTATT+GGG 0.202878 5_2:+29317862 Msa0766900:three_prime_UTR
TTCTCAAATCCACAGAAATT+TGG 0.216274 5_2:+29317800 Msa0766900:three_prime_UTR
TTTGCTCTTTCGAATGATTC+TGG 0.223719 5_2:-29317950 None:intergenic
TCCTTCACTCCTGAGACTTT+TGG 0.231534 5_2:+29317517 Msa0766900:three_prime_UTR
GCTCAAGTTTCAGGCGCTTT+TGG 0.247175 5_2:+29317905 Msa0766900:three_prime_UTR
CTGCTTGCTTCAGAAGTGTT+AGG 0.257607 5_2:-29316979 None:intergenic
AACTGATGATGTCATATTAC+TGG 0.259593 5_2:-29318107 None:intergenic
TTGACAGAGGTTGGATTGTT+AGG 0.266572 5_2:-29317842 None:intergenic
GAGGAGCTTGGCATCCTTCC+TGG 0.301290 5_2:+29317196 Msa0766900:CDS
GGACACTTTGGATCAAATTC+TGG 0.320988 5_2:+29317604 Msa0766900:three_prime_UTR
CTTGCACTTGAGAGGCTTGT+AGG 0.332180 5_2:+29317241 Msa0766900:CDS
TTGGCTGAGAAAACTGAAAT+TGG 0.346531 5_2:+29317482 Msa0766900:three_prime_UTR
TGTTCGAACTAAACCCCTTT+TGG 0.351193 5_2:+29316434 Msa0766900:five_prime_UTR
TGCTTGCTTCAGAAGTGTTA+GGG 0.357253 5_2:-29316978 None:intergenic
TCGATTGGGCTATTTACTAT+AGG 0.359305 5_2:-29318013 None:intergenic
AATTTCGAGCTTCACATTTC+CGG 0.370043 5_2:+29316392 Msa0766900:five_prime_UTR
ATTTGATGTCATAAGAAAAT+CGG 0.374741 5_2:+29318132 Msa0766900:three_prime_UTR
TAGGGGAGGATCTGAGCTTT+TGG 0.374945 5_2:+29319717 Msa0766900:three_prime_UTR
GAGGCGTTTAAGATTAGCTT+TGG 0.376524 5_2:+29316356 Msa0766900:five_prime_UTR
GAAAAGATTGAGTCCATTCC+AGG 0.377962 5_2:-29317214 None:intergenic
CATCTACTCAATTGTAAGAT+TGG 0.384775 5_2:+29316808 Msa0766900:five_prime_UTR
AAAACTTTGTTCCAATCGAT+TGG 0.399214 5_2:-29318028 None:intergenic
AGCAGCAGATCTTATTTCAA+TGG 0.400613 5_2:+29317560 Msa0766900:three_prime_UTR
GAAGCAGTAAAGCAAGGTTT+TGG 0.422646 5_2:+29317362 Msa0766900:CDS
CGCCGCTATCTTCGCCGCTC+AGG 0.428635 5_2:+29316560 Msa0766900:five_prime_UTR
AAGATTAGCTTTGGATTGGA+TGG 0.430982 5_2:+29316365 Msa0766900:five_prime_UTR
CCTTGAATTTCTTGAGGCAA+AGG 0.436195 5_2:-29319769 None:intergenic
GAAAACTGAAATTGGTAGAT+TGG 0.441363 5_2:+29317490 Msa0766900:three_prime_UTR
CTTGAATTTCTTGAGGCAAA+GGG 0.442218 5_2:-29319768 None:intergenic
CGAGGAAACCTTGAGAATCA+TGG 0.447952 5_2:+29317336 Msa0766900:CDS
GCAAGAACCTTTCGGCCGTT+AGG 0.448068 5_2:+29316851 Msa0766900:five_prime_UTR
AAACTTTGTTCCAATCGATT+GGG 0.449252 5_2:-29318027 None:intergenic
TAATTACAAGACTTCTGTCT+TGG 0.456853 5_2:-29319813 None:intergenic
TGCCTTGAGTCATATTAAGC+TGG 0.456940 5_2:-29317006 None:intergenic
TTGCACTTGAGAGGCTTGTA+GGG 0.463616 5_2:+29317242 Msa0766900:CDS
TTCAGAAACATGGGACACTT+TGG 0.465064 5_2:+29317592 Msa0766900:three_prime_UTR
AGAAGAAGAAACTGCCAAAA+GGG 0.467348 5_2:-29316448 None:intergenic
GCAGCAGATCTTATTTCAAT+GGG 0.474876 5_2:+29317561 Msa0766900:three_prime_UTR
TCGGTTACTCTCTTCATGCC+AGG 0.479429 5_2:+29318151 Msa0766900:three_prime_UTR
GAAGTTGAACGACAAAGAAC+CGG 0.483634 5_2:-29316411 None:intergenic
GCCTCAAGAAATTCAAGGAA+AGG 0.484187 5_2:+29319774 Msa0766900:three_prime_UTR
CCTTTGCCTCAAGAAATTCA+AGG 0.489134 5_2:+29319769 Msa0766900:three_prime_UTR
GATGACACGCCTTTGATCTC+CGG 0.493928 5_2:-29319746 None:intergenic
AAGAAGAAGAAACTGCCAAA+AGG 0.494142 5_2:-29316449 None:intergenic
CTGCACATTTGTGCATGCAT+TGG 0.496408 5_2:+29319926 Msa0766900:three_prime_UTR
ATCTCTGATTTGTCAAAACC+TGG 0.497549 5_2:-29318169 None:intergenic
GTTTAAGATTAGCTTTGGAT+TGG 0.499217 5_2:+29316361 Msa0766900:five_prime_UTR
GAACCTTTCGGCCGTTAGGT+TGG 0.499333 5_2:+29316855 Msa0766900:five_prime_UTR
GACGCGGAATTGACAGAGGT+TGG 0.500792 5_2:-29317851 None:intergenic
TTACAATTGAGTAGATGTCT+TGG 0.501810 5_2:-29316802 None:intergenic
CATATAATAGATTGTGGGAG+AGG 0.504284 5_2:+29317177 Msa0766900:intron
AGCGGCGAAGATAGCGGCGG+TGG 0.504443 5_2:-29316556 None:intergenic
TGGCTTCATCCAAAAGTCTC+AGG 0.507497 5_2:-29317526 None:intergenic
GCTTGGCATCCTTCCTGGAA+TGG 0.510438 5_2:+29317201 Msa0766900:CDS
ATGATGTCATATTACTGGAT+TGG 0.518193 5_2:-29318102 None:intergenic
TGAGATGAAAGCAGAAGGCA+AGG 0.520256 5_2:-29317987 None:intergenic
AGATTAGCTTTGGATTGGAT+GGG 0.521247 5_2:+29316366 Msa0766900:five_prime_UTR
TGTGCCATATAATAGATTGT+GGG 0.522182 5_2:+29317172 Msa0766900:intron
ATGACTCAAGGCACACTTGG+AGG 0.523642 5_2:+29317016 Msa0766900:CDS
CCTCAGCATAAAAGATGAGA+AGG 0.525109 5_2:-29319869 None:intergenic
TTAAAATAAATGCAGTATAG+GGG 0.532352 5_2:+29319700 Msa0766900:intron
ACCTTTCCTTGAATTTCTTG+AGG 0.534279 5_2:-29319775 None:intergenic
CAAGAAATTCAAGGAAAGGT+TGG 0.534618 5_2:+29319778 Msa0766900:three_prime_UTR
TTTCTCGGAAAAGGTGGCTC+CGG 0.536110 5_2:+29316528 Msa0766900:five_prime_UTR
CGAATGCAGCAAGAACCTTT+CGG 0.536767 5_2:+29316843 Msa0766900:five_prime_UTR
AATTCCGCGTCACGTTATTG+GGG 0.540407 5_2:+29317863 Msa0766900:three_prime_UTR
TAGATTGTGGGAGAGGAGCT+TGG 0.544408 5_2:+29317184 Msa0766900:intron
TTTCGGTACTTGCACTTGAG+AGG 0.545250 5_2:+29317233 Msa0766900:CDS
GGTTCTTGCTGCATTCGACA+TGG 0.545604 5_2:-29316837 None:intergenic
TGGTAGAAGCCGGAGATCAA+AGG 0.547294 5_2:+29319737 Msa0766900:three_prime_UTR
ATTTGGTTGCCTCCTTGTGA+TGG 0.549573 5_2:+29317817 Msa0766900:three_prime_UTR
TTTGGTTGTTTCCAACCTAA+CGG 0.555342 5_2:-29316866 None:intergenic
TATTAATGTTACAGCAGTGG+TGG 0.559778 5_2:+29319894 Msa0766900:three_prime_UTR
TTTAGTTGAAGCAACATCCT+CGG 0.559944 5_2:-29316496 None:intergenic
TAGTAAATAGCCCAATCGAT+TGG 0.561225 5_2:+29318017 Msa0766900:three_prime_UTR
GCTTGCTTCAGAAGTGTTAG+GGG 0.561764 5_2:-29316977 None:intergenic
TGAAGCAACATCCTCGGAGG+AGG 0.562836 5_2:-29316490 None:intergenic
TGACTCAAGGCACACTTGGA+GGG 0.565824 5_2:+29317017 Msa0766900:CDS
GAGGAAACCTTGAGAATCAT+GGG 0.567213 5_2:+29317337 Msa0766900:CDS
TCCAAAAGTCTCAGGAGTGA+AGG 0.568803 5_2:-29317518 None:intergenic
GCCTTGAGTCATATTAAGCT+GGG 0.571410 5_2:-29317005 None:intergenic
GGAGGATGAGTTCAGAAACA+TGG 0.573634 5_2:+29317582 Msa0766900:three_prime_UTR
GAAATTCAAGGAAAGGTTGG+CGG 0.573892 5_2:+29319781 Msa0766900:three_prime_UTR
GCTTCCACCCATGATTCTCA+AGG 0.576164 5_2:-29317344 None:intergenic
TTCTTCTTCTTCCTCCTCCG+AGG 0.578831 5_2:+29316479 Msa0766900:five_prime_UTR
GACTCAAGGCACACTTGGAG+GGG 0.579696 5_2:+29317018 Msa0766900:CDS
AAATTTCTGTGGATTTGAGA+AGG 0.582017 5_2:-29317798 None:intergenic
AATATGACTCAAGGCACACT+TGG 0.591609 5_2:+29317013 Msa0766900:CDS
TTTAAAATATATCCGCACAT+TGG 0.592995 5_2:+29317463 Msa0766900:three_prime_UTR
GTTCTTGCTGCATTCGACAT+GGG 0.595430 5_2:-29316836 None:intergenic
ACACTGTGAATAAAGATGCT+AGG 0.598622 5_2:+29318056 Msa0766900:three_prime_UTR
ATTCCGCGTCACGTTATTGG+GGG 0.599288 5_2:+29317864 Msa0766900:three_prime_UTR
GCCCAGCTTAATATGACTCA+AGG 0.605769 5_2:+29317004 Msa0766900:CDS
TTTCCAACCTAACGGCCGAA+AGG 0.607432 5_2:-29316858 None:intergenic
CACTTTGGATCAAATTCTGG+AGG 0.608227 5_2:+29317607 Msa0766900:three_prime_UTR
GATTATTAATGTTACAGCAG+TGG 0.608996 5_2:+29319891 Msa0766900:three_prime_UTR
AGGAGGCAACCAAATTTCTG+TGG 0.612090 5_2:-29317809 None:intergenic
GCAGATCTTATTTCAATGGG+AGG 0.614942 5_2:+29317564 Msa0766900:three_prime_UTR
GGACTTGAGATGAAAGCAGA+AGG 0.618345 5_2:-29317992 None:intergenic
AAATAAATGCAGTATAGGGG+AGG 0.629069 5_2:+29319703 Msa0766900:intron
GAAGAAGAAACTGCCAAAAG+GGG 0.640038 5_2:-29316447 None:intergenic
CTCAGCATAAAAGATGAGAA+GGG 0.640897 5_2:-29319868 None:intergenic
GAGGATGAGTTCAGAAACAT+GGG 0.643942 5_2:+29317583 Msa0766900:three_prime_UTR
TCAAACGAAAGAAAATGTCA+AGG 0.645004 5_2:-29317418 None:intergenic
GAGATGAAAGCAGAAGGCAA+GGG 0.655584 5_2:-29317986 None:intergenic
GATTGTTAGGATCCATCACA+AGG 0.660209 5_2:-29317829 None:intergenic
TGGGTGGAAGCAGTAAAGCA+AGG 0.674055 5_2:+29317356 Msa0766900:CDS
TACCTGAGCGGCGAAGATAG+CGG 0.683068 5_2:-29316562 None:intergenic
AGATTGAGTCCATTCCAGGA+AGG 0.684195 5_2:-29317210 None:intergenic
GAAACCTTGAGAATCATGGG+TGG 0.699723 5_2:+29317340 Msa0766900:CDS
CTGAGCGGCGAAGATAGCGG+CGG 0.708358 5_2:-29316559 None:intergenic
TTTGACGTAATAATATACGA+TGG 0.709980 5_2:+29317304 Msa0766900:CDS
AGTTGAAGCAACATCCTCGG+AGG 0.711043 5_2:-29316493 None:intergenic
ACGTGACGCGGAATTGACAG+AGG 0.716716 5_2:-29317855 None:intergenic
TATATTGAATTGATGCAGTG+AGG 0.746530 5_2:+29316337 Msa0766900:five_prime_UTR
TAAAGTTGTACGTACCTGAG+CGG 0.748110 5_2:-29316574 None:intergenic
TGTTAGGATCCATCACAAGG+AGG 0.756186 5_2:-29317826 None:intergenic
ATACGATGGTGTCAGCAGCG+AGG 0.764567 5_2:+29317318 Msa0766900:CDS
GCATGCACAAATGTGCAGTG+AGG 0.791847 5_2:-29319921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTCTTTTGTTTTTAT+GGG - chr5_2:29318356-29318375 None:intergenic 10.0%
!!! TAATATTTCTTTTGTTTTTA+TGG - chr5_2:29318357-29318376 None:intergenic 10.0%
!! TAAACAAAAGAAAAAAAAAA+TGG - chr5_2:29319683-29319702 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319252-29319271 Msa0766900:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319252-29319271 Msa0766900:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319252-29319271 Msa0766900:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319252-29319271 Msa0766900:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319252-29319271 Msa0766900:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319252-29319271 Msa0766900:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+TGG + chr5_2:29319252-29319271 Msa0766900:intron 100.0%
!!! TTTTCTATCTATATTTATGA+TGG + chr5_2:29317069-29317088 Msa0766900:intron 15.0%
!! TTTCTATCTATATTTATGAT+GGG + chr5_2:29317070-29317089 Msa0766900:intron 15.0%
!!! TTTTCATCAAATTTTTATCA+AGG + chr5_2:29317102-29317121 Msa0766900:intron 15.0%
!! AAACAAAAGAAATATTACTA+AGG + chr5_2:29318360-29318379 Msa0766900:intron 15.0%
!!! TTTAAAATAAATGCAGTATA+GGG + chr5_2:29319699-29319718 Msa0766900:intron 15.0%
!! ATTTGATGTCATAAGAAAAT+CGG + chr5_2:29318132-29318151 Msa0766900:three_prime_UTR 20.0%
!! AAATATAAAATGCATGAGAA+AGG - chr5_2:29318222-29318241 None:intergenic 20.0%
!! ATATTCTATGAGAAATAAGA+TGG + chr5_2:29318286-29318305 Msa0766900:intron 20.0%
!!! ATATGTTTTTGTAAAATTCC+TGG + chr5_2:29318465-29318484 Msa0766900:intron 20.0%
!! AGTTAAGAAATTTATTTACC+AGG - chr5_2:29318486-29318505 None:intergenic 20.0%
!! AAATTTCTACTCAAGAAATA+TGG - chr5_2:29319451-29319470 None:intergenic 20.0%
!!! TATTTCTTGAGTAGAAATTT+TGG + chr5_2:29319451-29319470 Msa0766900:intron 20.0%
!! TGATCTTTAATGAAATTGAT+AGG - chr5_2:29319479-29319498 None:intergenic 20.0%
!!! GTTTAAAATAAATGCAGTAT+AGG + chr5_2:29319698-29319717 Msa0766900:intron 20.0%
!! TTAAAATAAATGCAGTATAG+GGG + chr5_2:29319700-29319719 Msa0766900:intron 20.0%
!!! ACTAAATTACTCACTTTTCT+CGG + chr5_2:29316513-29316532 Msa0766900:five_prime_UTR 25.0%
!!! TTCAATGATAGATTAGTCTT+GGG + chr5_2:29316601-29316620 Msa0766900:intron 25.0%
! ATTGCATAATATATGCTAGA+TGG + chr5_2:29316649-29316668 Msa0766900:intron 25.0%
! TTGCATAATATATGCTAGAT+GGG + chr5_2:29316650-29316669 Msa0766900:intron 25.0%
! TAGAAATTCACGTGAATAAA+TGG - chr5_2:29316693-29316712 None:intergenic 25.0%
! TTTGACGTAATAATATACGA+TGG + chr5_2:29317304-29317323 Msa0766900:CDS 25.0%
!! TTTAAAATATATCCGCACAT+TGG + chr5_2:29317463-29317482 Msa0766900:three_prime_UTR 25.0%
!!! CTTTTTTACCATATTCTTCA+TGG + chr5_2:29318250-29318269 Msa0766900:intron 25.0%
! AATAAGATGGTTCTTATCTT+TGG + chr5_2:29318299-29318318 Msa0766900:intron 25.0%
!! CTTTGGTTCAAATAAAATGA+TGG + chr5_2:29318316-29318335 Msa0766900:intron 25.0%
!!! TTAACTTGCAAAATAGATGT+TGG + chr5_2:29318500-29318519 Msa0766900:intron 25.0%
! GTTAGTTAGAAGAAGATTAT+GGG + chr5_2:29318616-29318635 Msa0766900:intron 25.0%
! ATCATTAGAGAATATTTGGT+GGG - chr5_2:29318876-29318895 None:intergenic 25.0%
! AATCATTAGAGAATATTTGG+TGG - chr5_2:29318877-29318896 None:intergenic 25.0%
! GTCAATCATTAGAGAATATT+TGG - chr5_2:29318880-29318899 None:intergenic 25.0%
!!! TGATTGACAATGATTAGTTT+AGG + chr5_2:29318892-29318911 Msa0766900:intron 25.0%
! TTTACATTTATCTCCCATAT+AGG + chr5_2:29319347-29319366 Msa0766900:intron 25.0%
! TTACATTTATCTCCCATATA+GGG + chr5_2:29319348-29319367 Msa0766900:intron 25.0%
! TCATTAAAGATCAAATTGCT+TGG + chr5_2:29319486-29319505 Msa0766900:intron 25.0%
!! AACATAGAATTCAAGTTATC+CGG - chr5_2:29319543-29319562 None:intergenic 25.0%
TATATTGAATTGATGCAGTG+AGG + chr5_2:29316337-29316356 Msa0766900:five_prime_UTR 30.0%
!! GTTTAAGATTAGCTTTGGAT+TGG + chr5_2:29316361-29316380 Msa0766900:five_prime_UTR 30.0%
!! GTTCAATGATAGATTAGTCT+TGG + chr5_2:29316600-29316619 Msa0766900:intron 30.0%
TGCATAATATATGCTAGATG+GGG + chr5_2:29316651-29316670 Msa0766900:intron 30.0%
TTACAATTGAGTAGATGTCT+TGG - chr5_2:29316805-29316824 None:intergenic 30.0%
CATCTACTCAATTGTAAGAT+TGG + chr5_2:29316808-29316827 Msa0766900:five_prime_UTR 30.0%
!!! CCTTGTGTACATTTTGATTT+CGG + chr5_2:29316904-29316923 Msa0766900:intron 30.0%
TTTATCAAGGTTTCAAACTG+CGG + chr5_2:29317115-29317134 Msa0766900:intron 30.0%
TCTATTATATGGCACAAAAG+AGG - chr5_2:29317168-29317187 None:intergenic 30.0%
TTGTGCCATATAATAGATTG+TGG + chr5_2:29317171-29317190 Msa0766900:intron 30.0%
TGTGCCATATAATAGATTGT+GGG + chr5_2:29317172-29317191 Msa0766900:intron 30.0%
TCAAACGAAAGAAAATGTCA+AGG - chr5_2:29317421-29317440 None:intergenic 30.0%
! GTTTGATACTTCGATTTTGT+AGG + chr5_2:29317435-29317454 Msa0766900:three_prime_UTR 30.0%
GAAAACTGAAATTGGTAGAT+TGG + chr5_2:29317490-29317509 Msa0766900:three_prime_UTR 30.0%
!! TCTGCTGCTATTTATTTTCA+TGG - chr5_2:29317549-29317568 None:intergenic 30.0%
! TGATTATGTGTTTTCCAGAA+AGG + chr5_2:29317767-29317786 Msa0766900:intron 30.0%
AAATTTCTGTGGATTTGAGA+AGG - chr5_2:29317801-29317820 None:intergenic 30.0%
TTCTCAAATCCACAGAAATT+TGG + chr5_2:29317800-29317819 Msa0766900:three_prime_UTR 30.0%
AAACTTTGTTCCAATCGATT+GGG - chr5_2:29318030-29318049 None:intergenic 30.0%
AAAACTTTGTTCCAATCGAT+TGG - chr5_2:29318031-29318050 None:intergenic 30.0%
ATGATGTCATATTACTGGAT+TGG - chr5_2:29318105-29318124 None:intergenic 30.0%
! AACTGATGATGTCATATTAC+TGG - chr5_2:29318110-29318129 None:intergenic 30.0%
TATAAAATGCATGAGAAAGG+AGG - chr5_2:29318219-29318238 None:intergenic 30.0%
! GGTTAGTTAGAAGAAGATTA+TGG + chr5_2:29318615-29318634 Msa0766900:intron 30.0%
ATGGGACTGTTATAAATAGT+AGG + chr5_2:29318634-29318653 Msa0766900:intron 30.0%
GACTGTTATAAATAGTAGGA+GGG + chr5_2:29318638-29318657 Msa0766900:intron 30.0%
GGGATTGTATACCTAAATTA+GGG - chr5_2:29318855-29318874 None:intergenic 30.0%
! TCATTAGAGAATATTTGGTG+GGG - chr5_2:29318875-29318894 None:intergenic 30.0%
!! GACAATGATTAGTTTAGGTA+CGG + chr5_2:29318897-29318916 Msa0766900:intron 30.0%
CAATTTATGCGGTAAAGTTT+GGG + chr5_2:29319210-29319229 Msa0766900:intron 30.0%
!! TAAAGAGCACTTACTTACAA+AGG + chr5_2:29319322-29319341 Msa0766900:intron 30.0%
TACATTTATCTCCCATATAG+GGG + chr5_2:29319349-29319368 Msa0766900:intron 30.0%
AAAACATGCATTAAACCAGA+AGG - chr5_2:29319391-29319410 None:intergenic 30.0%
TTTACGTATTCTTGTTCAAC+CGG + chr5_2:29319521-29319540 Msa0766900:intron 30.0%
TAATTACAAGACTTCTGTCT+TGG - chr5_2:29319816-29319835 None:intergenic 30.0%
GATTATTAATGTTACAGCAG+TGG + chr5_2:29319891-29319910 Msa0766900:three_prime_UTR 30.0%
!! AAGATTAGCTTTGGATTGGA+TGG + chr5_2:29316365-29316384 Msa0766900:five_prime_UTR 35.0%
!! AGATTAGCTTTGGATTGGAT+GGG + chr5_2:29316366-29316385 Msa0766900:five_prime_UTR 35.0%
AATTTCGAGCTTCACATTTC+CGG + chr5_2:29316392-29316411 Msa0766900:five_prime_UTR 35.0%
AGAAGAAGAAACTGCCAAAA+GGG - chr5_2:29316451-29316470 None:intergenic 35.0%
AAGAAGAAGAAACTGCCAAA+AGG - chr5_2:29316452-29316471 None:intergenic 35.0%
TTTAGTTGAAGCAACATCCT+CGG - chr5_2:29316499-29316518 None:intergenic 35.0%
!! TTACTCACTTTTCTCGGAAA+AGG + chr5_2:29316519-29316538 Msa0766900:five_prime_UTR 35.0%
! CACGTGAATTTCTAGACATT+AGG + chr5_2:29316699-29316718 Msa0766900:intron 35.0%
! CATGTTTCAGCATTTTGCAA+TGG + chr5_2:29316748-29316767 Msa0766900:intron 35.0%
! TTTGGTTGTTTCCAACCTAA+CGG - chr5_2:29316869-29316888 None:intergenic 35.0%
AGGAAAAGCAACACATACTT+TGG - chr5_2:29316887-29316906 None:intergenic 35.0%
CCGAAATCAAAATGTACACA+AGG - chr5_2:29316907-29316926 None:intergenic 35.0%
CTCTCCCACAATCTATTATA+TGG - chr5_2:29317179-29317198 None:intergenic 35.0%
CATATAATAGATTGTGGGAG+AGG + chr5_2:29317177-29317196 Msa0766900:intron 35.0%
!! TGGAATGGACTCAATCTTTT+CGG + chr5_2:29317216-29317235 Msa0766900:CDS 35.0%
TTGGCTGAGAAAACTGAAAT+TGG + chr5_2:29317482-29317501 Msa0766900:three_prime_UTR 35.0%
! AGCAGCAGATCTTATTTCAA+TGG + chr5_2:29317560-29317579 Msa0766900:three_prime_UTR 35.0%
! GCAGCAGATCTTATTTCAAT+GGG + chr5_2:29317561-29317580 Msa0766900:three_prime_UTR 35.0%
!!! CTTTCGAATGATTCTGGTTT+TGG - chr5_2:29317947-29317966 None:intergenic 35.0%
TTTGCTCTTTCGAATGATTC+TGG - chr5_2:29317953-29317972 None:intergenic 35.0%
TCGATTGGGCTATTTACTAT+AGG - chr5_2:29318016-29318035 None:intergenic 35.0%
TAGTAAATAGCCCAATCGAT+TGG + chr5_2:29318017-29318036 Msa0766900:three_prime_UTR 35.0%
! CGATTGGAACAAAGTTTTAC+TGG + chr5_2:29318033-29318052 Msa0766900:three_prime_UTR 35.0%
ACACTGTGAATAAAGATGCT+AGG + chr5_2:29318056-29318075 Msa0766900:three_prime_UTR 35.0%
! ATCTCTGATTTGTCAAAACC+TGG - chr5_2:29318172-29318191 None:intergenic 35.0%
AATGAGTGCCATGAAGAATA+TGG - chr5_2:29318261-29318280 None:intergenic 35.0%
ATTTCTGATAGACGCTTAGT+TGG + chr5_2:29318545-29318564 Msa0766900:intron 35.0%
TAACAAACTAACCATCTAGC+AGG + chr5_2:29318594-29318613 Msa0766900:intron 35.0%
GGACTGTTATAAATAGTAGG+AGG + chr5_2:29318637-29318656 Msa0766900:intron 35.0%
TCCATCCTTTCTCCATTTAT+AGG + chr5_2:29318788-29318807 Msa0766900:intron 35.0%
GGGGATTGTATACCTAAATT+AGG - chr5_2:29318856-29318875 None:intergenic 35.0%
! ATGTTGTGGCTTTTTGCATA+TGG + chr5_2:29318923-29318942 Msa0766900:intron 35.0%
AAACTGACCTTGACAAATGT+TGG - chr5_2:29319073-29319092 None:intergenic 35.0%
GCAATTTATGCGGTAAAGTT+TGG + chr5_2:29319209-29319228 Msa0766900:intron 35.0%
TGTGTTTGACACTTGTCATA+TGG + chr5_2:29319570-29319589 Msa0766900:intron 35.0%
GTGTTTGACACTTGTCATAT+GGG + chr5_2:29319571-29319590 Msa0766900:intron 35.0%
AAATAAATGCAGTATAGGGG+AGG + chr5_2:29319703-29319722 Msa0766900:intron 35.0%
CTTGAATTTCTTGAGGCAAA+GGG - chr5_2:29319771-29319790 None:intergenic 35.0%
ACCTTTCCTTGAATTTCTTG+AGG - chr5_2:29319778-29319797 None:intergenic 35.0%
CAAGAAATTCAAGGAAAGGT+TGG + chr5_2:29319778-29319797 Msa0766900:three_prime_UTR 35.0%
AAGACTTCTGTCTTGGAATT+TGG - chr5_2:29319809-29319828 None:intergenic 35.0%
CTCAGCATAAAAGATGAGAA+GGG - chr5_2:29319871-29319890 None:intergenic 35.0%
TATTAATGTTACAGCAGTGG+TGG + chr5_2:29319894-29319913 Msa0766900:three_prime_UTR 35.0%
!! GAGGCGTTTAAGATTAGCTT+TGG + chr5_2:29316356-29316375 Msa0766900:five_prime_UTR 40.0%
GAAGTTGAACGACAAAGAAC+CGG - chr5_2:29316414-29316433 None:intergenic 40.0%
! TGTTCGAACTAAACCCCTTT+TGG + chr5_2:29316434-29316453 Msa0766900:five_prime_UTR 40.0%
GAAGAAGAAACTGCCAAAAG+GGG - chr5_2:29316450-29316469 None:intergenic 40.0%
TAAAGTTGTACGTACCTGAG+CGG - chr5_2:29316577-29316596 None:intergenic 40.0%
CGTGAATAAATGGAGTGTAC+AGG - chr5_2:29316683-29316702 None:intergenic 40.0%
! TTTCAGCATTTTGCAATGGC+TGG + chr5_2:29316752-29316771 Msa0766900:intron 40.0%
!! TGCTTGCTTCAGAAGTGTTA+GGG - chr5_2:29316981-29317000 None:intergenic 40.0%
GCCTTGAGTCATATTAAGCT+GGG - chr5_2:29317008-29317027 None:intergenic 40.0%
TGCCTTGAGTCATATTAAGC+TGG - chr5_2:29317009-29317028 None:intergenic 40.0%
AATATGACTCAAGGCACACT+TGG + chr5_2:29317013-29317032 Msa0766900:CDS 40.0%
GAAAAGATTGAGTCCATTCC+AGG - chr5_2:29317217-29317236 None:intergenic 40.0%
GAGGAAACCTTGAGAATCAT+GGG + chr5_2:29317337-29317356 Msa0766900:CDS 40.0%
! GAAGCAGTAAAGCAAGGTTT+TGG + chr5_2:29317362-29317381 Msa0766900:CDS 40.0%
! GCAGATCTTATTTCAATGGG+AGG + chr5_2:29317564-29317583 Msa0766900:three_prime_UTR 40.0%
GAGGATGAGTTCAGAAACAT+GGG + chr5_2:29317583-29317602 Msa0766900:three_prime_UTR 40.0%
TTCAGAAACATGGGACACTT+TGG + chr5_2:29317592-29317611 Msa0766900:three_prime_UTR 40.0%
GGACACTTTGGATCAAATTC+TGG + chr5_2:29317604-29317623 Msa0766900:three_prime_UTR 40.0%
CACTTTGGATCAAATTCTGG+AGG + chr5_2:29317607-29317626 Msa0766900:three_prime_UTR 40.0%
CGATCTTTATCCACTGTGTA+GGG - chr5_2:29317705-29317724 None:intergenic 40.0%
CCTACACAGTGGATAAAGAT+CGG + chr5_2:29317703-29317722 Msa0766900:intron 40.0%
GATTGTTAGGATCCATCACA+AGG - chr5_2:29317832-29317851 None:intergenic 40.0%
TTGACAGAGGTTGGATTGTT+AGG - chr5_2:29317845-29317864 None:intergenic 40.0%
CTTCTAACTAACCTGCTAGA+TGG - chr5_2:29318608-29318627 None:intergenic 40.0%
TAAATAGTAGGAGGGAAGAG+AGG + chr5_2:29318646-29318665 Msa0766900:intron 40.0%
CTTGTCTGCAAAACAAGTCT+AGG + chr5_2:29318686-29318705 Msa0766900:intron 40.0%
GCCTATAAATGGAGAAAGGA+TGG - chr5_2:29318792-29318811 None:intergenic 40.0%
GAACGCCTATAAATGGAGAA+AGG - chr5_2:29318796-29318815 None:intergenic 40.0%
AGAATCGGAACGCCTATAAA+TGG - chr5_2:29318803-29318822 None:intergenic 40.0%
TTTATAGGCGTTCCGATTCT+AGG + chr5_2:29318803-29318822 Msa0766900:intron 40.0%
TTATAGGCGTTCCGATTCTA+GGG + chr5_2:29318804-29318823 Msa0766900:intron 40.0%
TTTAGGTACGGAAGATGTTG+TGG + chr5_2:29318909-29318928 Msa0766900:intron 40.0%
GGAAAGTTCCAACGGTAAAA+AGG - chr5_2:29318955-29318974 None:intergenic 40.0%
ATAATTGTTCAGTGCTCAGC+CGG - chr5_2:29318983-29319002 None:intergenic 40.0%
!! GCTGAGCACTGAACAATTAT+GGG + chr5_2:29318983-29319002 Msa0766900:intron 40.0%
!! CTGAGCACTGAACAATTATG+GGG + chr5_2:29318984-29319003 Msa0766900:intron 40.0%
!! AGTTTCTAGTCTAGTGATCC+TGG + chr5_2:29319088-29319107 Msa0766900:intron 40.0%
!! TTAAAGTGCCTTCGCCTTTT+AGG - chr5_2:29319151-29319170 None:intergenic 40.0%
TAACTGGGTGTCCAAACATT+TGG + chr5_2:29319168-29319187 Msa0766900:intron 40.0%
GCTATTCGGAACCAAATGTT+TGG - chr5_2:29319182-29319201 None:intergenic 40.0%
! AACATTTGGTTCCGAATAGC+AGG + chr5_2:29319182-29319201 Msa0766900:intron 40.0%
! ACATTTGGTTCCGAATAGCA+GGG + chr5_2:29319183-29319202 Msa0766900:intron 40.0%
AAATTGCCTACCCTGCTATT+CGG - chr5_2:29319196-29319215 None:intergenic 40.0%
ATTTATCTCCCATATAGGGG+AGG + chr5_2:29319352-29319371 Msa0766900:intron 40.0%
GCATTAAACCAGAAGGTTTC+AGG - chr5_2:29319384-29319403 None:intergenic 40.0%
TTACCACTAGACCAAACCAT+TGG + chr5_2:29319411-29319430 Msa0766900:intron 40.0%
! AGAAGTGCAGAATTTGTGAG+AGG - chr5_2:29319607-29319626 None:intergenic 40.0%
CAAATTCTGCACTTCTCACA+TGG + chr5_2:29319611-29319630 Msa0766900:intron 40.0%
CCTTGAATTTCTTGAGGCAA+AGG - chr5_2:29319772-29319791 None:intergenic 40.0%
CCTTTGCCTCAAGAAATTCA+AGG + chr5_2:29319769-29319788 Msa0766900:three_prime_UTR 40.0%
GCCTCAAGAAATTCAAGGAA+AGG + chr5_2:29319774-29319793 Msa0766900:three_prime_UTR 40.0%
GAAATTCAAGGAAAGGTTGG+CGG + chr5_2:29319781-29319800 Msa0766900:three_prime_UTR 40.0%
CCTCAGCATAAAAGATGAGA+AGG - chr5_2:29319872-29319891 None:intergenic 40.0%
! CCTTCTCATCTTTTATGCTG+AGG + chr5_2:29319869-29319888 Msa0766900:three_prime_UTR 40.0%
!! CTCACTTTTCTCGGAAAAGG+TGG + chr5_2:29316522-29316541 Msa0766900:five_prime_UTR 45.0%
! TTGGGACCTCCAATTTTCGT+TGG + chr5_2:29316619-29316638 Msa0766900:intron 45.0%
! ACCTCCAATTTTCGTTGGCA+GGG + chr5_2:29316624-29316643 Msa0766900:intron 45.0%
ATGTCCCTGCCAACGAAAAT+TGG - chr5_2:29316631-29316650 None:intergenic 45.0%
GTTCTTGCTGCATTCGACAT+GGG - chr5_2:29316839-29316858 None:intergenic 45.0%
CGAATGCAGCAAGAACCTTT+CGG + chr5_2:29316843-29316862 Msa0766900:five_prime_UTR 45.0%
!! GCTTGCTTCAGAAGTGTTAG+GGG - chr5_2:29316980-29316999 None:intergenic 45.0%
!! CTGCTTGCTTCAGAAGTGTT+AGG - chr5_2:29316982-29317001 None:intergenic 45.0%
GCCCAGCTTAATATGACTCA+AGG + chr5_2:29317004-29317023 Msa0766900:CDS 45.0%
AAGGTTTCAAACTGCGGTTG+CGG + chr5_2:29317121-29317140 Msa0766900:intron 45.0%
AGATTGAGTCCATTCCAGGA+AGG - chr5_2:29317213-29317232 None:intergenic 45.0%
TTTCGGTACTTGCACTTGAG+AGG + chr5_2:29317233-29317252 Msa0766900:CDS 45.0%
TTGCACTTGAGAGGCTTGTA+GGG + chr5_2:29317242-29317261 Msa0766900:CDS 45.0%
! TGAGAGGCTTGTAGGGTTTT+TGG + chr5_2:29317249-29317268 Msa0766900:CDS 45.0%
! GAGAGGCTTGTAGGGTTTTT+GGG + chr5_2:29317250-29317269 Msa0766900:CDS 45.0%
! AGAGGCTTGTAGGGTTTTTG+GGG + chr5_2:29317251-29317270 Msa0766900:CDS 45.0%
!! CTTGTAGGGTTTTTGGGGAT+GGG + chr5_2:29317256-29317275 Msa0766900:CDS 45.0%
CGAGGAAACCTTGAGAATCA+TGG + chr5_2:29317336-29317355 Msa0766900:CDS 45.0%
GAAACCTTGAGAATCATGGG+TGG + chr5_2:29317340-29317359 Msa0766900:CDS 45.0%
! CAGTTTTCTCAGCCAATGTG+CGG - chr5_2:29317478-29317497 None:intergenic 45.0%
! TCCTTCACTCCTGAGACTTT+TGG + chr5_2:29317517-29317536 Msa0766900:three_prime_UTR 45.0%
TCCAAAAGTCTCAGGAGTGA+AGG - chr5_2:29317521-29317540 None:intergenic 45.0%
TGGCTTCATCCAAAAGTCTC+AGG - chr5_2:29317529-29317548 None:intergenic 45.0%
GGAGGATGAGTTCAGAAACA+TGG + chr5_2:29317582-29317601 Msa0766900:three_prime_UTR 45.0%
CTTTATCCACTGTGTAGGGT+TGG - chr5_2:29317701-29317720 None:intergenic 45.0%
CCGATCTTTATCCACTGTGT+AGG - chr5_2:29317706-29317725 None:intergenic 45.0%
ACACAGTGGATAAAGATCGG+TGG + chr5_2:29317706-29317725 Msa0766900:intron 45.0%
CACAGTGGATAAAGATCGGT+GGG + chr5_2:29317707-29317726 Msa0766900:intron 45.0%
AGAAGGCAGAAGATCCTTTC+TGG - chr5_2:29317784-29317803 None:intergenic 45.0%
AGGAGGCAACCAAATTTCTG+TGG - chr5_2:29317812-29317831 None:intergenic 45.0%
ATTTGGTTGCCTCCTTGTGA+TGG + chr5_2:29317817-29317836 Msa0766900:three_prime_UTR 45.0%
TGTTAGGATCCATCACAAGG+AGG - chr5_2:29317829-29317848 None:intergenic 45.0%
TCAATTCCGCGTCACGTTAT+TGG + chr5_2:29317861-29317880 Msa0766900:three_prime_UTR 45.0%
CAATTCCGCGTCACGTTATT+GGG + chr5_2:29317862-29317881 Msa0766900:three_prime_UTR 45.0%
AATTCCGCGTCACGTTATTG+GGG + chr5_2:29317863-29317882 Msa0766900:three_prime_UTR 45.0%
! TTATTGGGGGTGTGCAATTC+AGG + chr5_2:29317877-29317896 Msa0766900:three_prime_UTR 45.0%
!!! TTCTGGTTTTGGTTGCTGAG+AGG - chr5_2:29317936-29317955 None:intergenic 45.0%
GAGATGAAAGCAGAAGGCAA+GGG - chr5_2:29317989-29318008 None:intergenic 45.0%
TGAGATGAAAGCAGAAGGCA+AGG - chr5_2:29317990-29318009 None:intergenic 45.0%
GGACTTGAGATGAAAGCAGA+AGG - chr5_2:29317995-29318014 None:intergenic 45.0%
AATTCACCCTATCCACTCAC+AGG - chr5_2:29318571-29318590 None:intergenic 45.0%
ACAAGTCTAGGTTGCCATCA+AGG + chr5_2:29318698-29318717 Msa0766900:intron 45.0%
CAAGTCTAGGTTGCCATCAA+GGG + chr5_2:29318699-29318718 Msa0766900:intron 45.0%
! GGCCAATGGTTGGTCAAATT+GGG + chr5_2:29318720-29318739 Msa0766900:intron 45.0%
CTCCCAATTTGACCAACCAT+TGG - chr5_2:29318725-29318744 None:intergenic 45.0%
! GGAAGAAGCCTTTTTACCGT+TGG + chr5_2:29318944-29318963 Msa0766900:intron 45.0%
!! GGCTGAGCACTGAACAATTA+TGG + chr5_2:29318982-29319001 Msa0766900:intron 45.0%
! AGCACTGAACAATTATGGGG+AGG + chr5_2:29318987-29319006 Msa0766900:intron 45.0%
TAAAGGGGTAGGACAACCTA+CGG - chr5_2:29319020-29319039 None:intergenic 45.0%
AAGCTTTACGCAAACAGGAG+GGG - chr5_2:29319048-29319067 None:intergenic 45.0%
CAAGCTTTACGCAAACAGGA+GGG - chr5_2:29319049-29319068 None:intergenic 45.0%
AGCTTGGCCAACATTTGTCA+AGG + chr5_2:29319063-29319082 Msa0766900:intron 45.0%
! CTTTTAGGCTTGACACTCAG+GGG - chr5_2:29319136-29319155 None:intergenic 45.0%
! CCTTTTAGGCTTGACACTCA+GGG - chr5_2:29319137-29319156 None:intergenic 45.0%
!! AAAGGCGAAGGCACTTTAAC+TGG + chr5_2:29319152-29319171 Msa0766900:intron 45.0%
!! AAGGCGAAGGCACTTTAACT+GGG + chr5_2:29319153-29319172 Msa0766900:intron 45.0%
AGCAGGGTAGGCAATTTATG+CGG + chr5_2:29319199-29319218 Msa0766900:intron 45.0%
AAGTTTGGGAGCCAGTTATG+TGG + chr5_2:29319224-29319243 Msa0766900:intron 45.0%
AGTTTGGGAGCCAGTTATGT+GGG + chr5_2:29319225-29319244 Msa0766900:intron 45.0%
!! ACTCCAATGGTTTGGTCTAG+TGG - chr5_2:29319417-29319436 None:intergenic 45.0%
GCAACTCAACTCCAATGGTT+TGG - chr5_2:29319425-29319444 None:intergenic 45.0%
! TCTGAGCTTTTGGTAGAAGC+CGG + chr5_2:29319727-29319746 Msa0766900:three_prime_UTR 45.0%
CTGCACATTTGTGCATGCAT+TGG + chr5_2:29319926-29319945 Msa0766900:three_prime_UTR 45.0%
TTCTTCTTCTTCCTCCTCCG+AGG + chr5_2:29316479-29316498 Msa0766900:five_prime_UTR 50.0%
AGTTGAAGCAACATCCTCGG+AGG - chr5_2:29316496-29316515 None:intergenic 50.0%
TTTCTCGGAAAAGGTGGCTC+CGG + chr5_2:29316528-29316547 Msa0766900:five_prime_UTR 50.0%
! GACCTCCAATTTTCGTTGGC+AGG + chr5_2:29316623-29316642 Msa0766900:intron 50.0%
TCCCTGCCAACGAAAATTGG+AGG - chr5_2:29316628-29316647 None:intergenic 50.0%
GGTTCTTGCTGCATTCGACA+TGG - chr5_2:29316840-29316859 None:intergenic 50.0%
TTTCCAACCTAACGGCCGAA+AGG - chr5_2:29316861-29316880 None:intergenic 50.0%
ATGACTCAAGGCACACTTGG+AGG + chr5_2:29317016-29317035 Msa0766900:CDS 50.0%
TGACTCAAGGCACACTTGGA+GGG + chr5_2:29317017-29317036 Msa0766900:CDS 50.0%
! TCAAACTGCGGTTGCGGTTT+TGG + chr5_2:29317127-29317146 Msa0766900:intron 50.0%
TAGATTGTGGGAGAGGAGCT+TGG + chr5_2:29317184-29317203 Msa0766900:intron 50.0%
CTTGCACTTGAGAGGCTTGT+AGG + chr5_2:29317241-29317260 Msa0766900:CDS 50.0%
!! GCTTGTAGGGTTTTTGGGGA+TGG + chr5_2:29317255-29317274 Msa0766900:CDS 50.0%
GCTTCCACCCATGATTCTCA+AGG - chr5_2:29317347-29317366 None:intergenic 50.0%
TGGGTGGAAGCAGTAAAGCA+AGG + chr5_2:29317356-29317375 Msa0766900:CDS 50.0%
ATGTAGCCAACCCTACACAG+TGG + chr5_2:29317692-29317711 Msa0766900:intron 50.0%
ATTCCGCGTCACGTTATTGG+GGG + chr5_2:29317864-29317883 Msa0766900:three_prime_UTR 50.0%
! GCTCAAGTTTCAGGCGCTTT+TGG + chr5_2:29317905-29317924 Msa0766900:three_prime_UTR 50.0%
TCGGTTACTCTCTTCATGCC+AGG + chr5_2:29318151-29318170 Msa0766900:three_prime_UTR 50.0%
! TAGTTGGCCTGTGAGTGGAT+AGG + chr5_2:29318561-29318580 Msa0766900:intron 50.0%
! AGTTGGCCTGTGAGTGGATA+GGG + chr5_2:29318562-29318581 Msa0766900:intron 50.0%
! GGGCCAATGGTTGGTCAAAT+TGG + chr5_2:29318719-29318738 Msa0766900:intron 50.0%
TAGGGTCGAGCCTGACAAAA+GGG - chr5_2:29318837-29318856 None:intergenic 50.0%
TTAGGGTCGAGCCTGACAAA+AGG - chr5_2:29318838-29318857 None:intergenic 50.0%
GTCAGGCTCGACCCTAATTT+AGG + chr5_2:29318841-29318860 Msa0766900:intron 50.0%
CGGCTCAAGGAAAGTTCCAA+CGG - chr5_2:29318963-29318982 None:intergenic 50.0%
CGTTGGAACTTTCCTTGAGC+CGG + chr5_2:29318961-29318980 Msa0766900:intron 50.0%
AACAGGAGGGGTGGCTTAAA+GGG - chr5_2:29319036-29319055 None:intergenic 50.0%
AAACAGGAGGGGTGGCTTAA+AGG - chr5_2:29319037-29319056 None:intergenic 50.0%
CCAAGCTTTACGCAAACAGG+AGG - chr5_2:29319050-29319069 None:intergenic 50.0%
CCTCCTGTTTGCGTAAAGCT+TGG + chr5_2:29319047-29319066 Msa0766900:intron 50.0%
TGGCCAAGCTTTACGCAAAC+AGG - chr5_2:29319053-29319072 None:intergenic 50.0%
ATCCTGGTCAGTCATCCTCA+GGG + chr5_2:29319104-29319123 Msa0766900:intron 50.0%
CCCTGAGTGTCAAGCCTAAA+AGG + chr5_2:29319134-29319153 Msa0766900:intron 50.0%
! GCCTTTTAGGCTTGACACTC+AGG - chr5_2:29319138-29319157 None:intergenic 50.0%
GTGTCAAGCCTAAAAGGCGA+AGG + chr5_2:29319140-29319159 Msa0766900:intron 50.0%
TTGGTTCCGAATAGCAGGGT+AGG + chr5_2:29319187-29319206 Msa0766900:intron 50.0%
GTTTGGGAGCCAGTTATGTG+GGG + chr5_2:29319226-29319245 Msa0766900:intron 50.0%
TTTGGGAGCCAGTTATGTGG+GGG + chr5_2:29319227-29319246 Msa0766900:intron 50.0%
GGTTCGATCCTCCCCTATAT+GGG - chr5_2:29319363-29319382 None:intergenic 50.0%
AGGTTCGATCCTCCCCTATA+TGG - chr5_2:29319364-29319383 None:intergenic 50.0%
GGATCGAACCTGAAACCTTC+TGG + chr5_2:29319373-29319392 Msa0766900:intron 50.0%
GGACAGCAACTCAACTCCAA+TGG - chr5_2:29319430-29319449 None:intergenic 50.0%
! TAGGGGAGGATCTGAGCTTT+TGG + chr5_2:29319717-29319736 Msa0766900:three_prime_UTR 50.0%
TGGTAGAAGCCGGAGATCAA+AGG + chr5_2:29319737-29319756 Msa0766900:three_prime_UTR 50.0%
GATGACACGCCTTTGATCTC+CGG - chr5_2:29319749-29319768 None:intergenic 50.0%
GCATGCACAAATGTGCAGTG+AGG - chr5_2:29319924-29319943 None:intergenic 50.0%
TGAAGCAACATCCTCGGAGG+AGG - chr5_2:29316493-29316512 None:intergenic 55.0%
TACCTGAGCGGCGAAGATAG+CGG - chr5_2:29316565-29316584 None:intergenic 55.0%
GCAAGAACCTTTCGGCCGTT+AGG + chr5_2:29316851-29316870 Msa0766900:five_prime_UTR 55.0%
GAACCTTTCGGCCGTTAGGT+TGG + chr5_2:29316855-29316874 Msa0766900:five_prime_UTR 55.0%
GACTCAAGGCACACTTGGAG+GGG + chr5_2:29317018-29317037 Msa0766900:CDS 55.0%
GCTTGGCATCCTTCCTGGAA+TGG + chr5_2:29317201-29317220 Msa0766900:CDS 55.0%
! ATACGATGGTGTCAGCAGCG+AGG + chr5_2:29317318-29317337 Msa0766900:CDS 55.0%
GACGCGGAATTGACAGAGGT+TGG - chr5_2:29317854-29317873 None:intergenic 55.0%
ACGTGACGCGGAATTGACAG+AGG - chr5_2:29317858-29317877 None:intergenic 55.0%
ACACCCCCAATAACGTGACG+CGG - chr5_2:29317870-29317889 None:intergenic 55.0%
CAGGCTGGTGCTCAAGTTTC+AGG + chr5_2:29317896-29317915 Msa0766900:three_prime_UTR 55.0%
! ACGCTTAGTTGGCCTGTGAG+TGG + chr5_2:29318556-29318575 Msa0766900:intron 55.0%
AGTAGGAGGGAAGAGAGGAG+AGG + chr5_2:29318651-29318670 Msa0766900:intron 55.0%
GGAAGAGAGGAGAGGATGCT+TGG + chr5_2:29318659-29318678 Msa0766900:intron 55.0%
AGGTTGCCATCAAGGGCCAA+TGG + chr5_2:29318706-29318725 Msa0766900:intron 55.0%
TGCCATCAAGGGCCAATGGT+TGG + chr5_2:29318710-29318729 Msa0766900:intron 55.0%
GACCAACCATTGGCCCTTGA+TGG - chr5_2:29318715-29318734 None:intergenic 55.0%
AGGGGACCAGACCCTAGAAT+CGG - chr5_2:29318818-29318837 None:intergenic 55.0%
AGGGTCGAGCCTGACAAAAG+GGG - chr5_2:29318836-29318855 None:intergenic 55.0%
ATGGGGAGGATTGTGACCGT+AGG + chr5_2:29319001-29319020 Msa0766900:intron 55.0%
ACAGGAGGGGTGGCTTAAAG+GGG - chr5_2:29319035-29319054 None:intergenic 55.0%
CTTTACGCAAACAGGAGGGG+TGG - chr5_2:29319045-29319064 None:intergenic 55.0%
GATCCTGGTCAGTCATCCTC+AGG + chr5_2:29319103-29319122 Msa0766900:intron 55.0%
TCCTGGTCAGTCATCCTCAG+GGG + chr5_2:29319105-29319124 Msa0766900:intron 55.0%
TTGGGAGCCAGTTATGTGGG+GGG + chr5_2:29319228-29319247 Msa0766900:intron 55.0%
ATCTTCCCTGCCTTCGACTG+GGG - chr5_2:29319300-29319319 None:intergenic 55.0%
GATCTTCCCTGCCTTCGACT+GGG - chr5_2:29319301-29319320 None:intergenic 55.0%
AGATCTTCCCTGCCTTCGAC+TGG - chr5_2:29319302-29319321 None:intergenic 55.0%
!! GATAGCGGCGGTGGTTTTGC+CGG - chr5_2:29316550-29316569 None:intergenic 60.0%
TCAAGGCACACTTGGAGGGG+TGG + chr5_2:29317021-29317040 Msa0766900:intron 60.0%
CAAGGCACACTTGGAGGGGT+GGG + chr5_2:29317022-29317041 Msa0766900:intron 60.0%
GAGGAGCTTGGCATCCTTCC+TGG + chr5_2:29317196-29317215 Msa0766900:CDS 60.0%
! TGGGGGTGTGCAATTCAGGC+TGG + chr5_2:29317881-29317900 Msa0766900:three_prime_UTR 60.0%
!! GGCGTTCCGATTCTAGGGTC+TGG + chr5_2:29318809-29318828 Msa0766900:intron 60.0%
! GGGTCTGGTCCCCTTTTGTC+AGG + chr5_2:29318824-29318843 Msa0766900:intron 60.0%
! TTCAGTGCTCAGCCGGCTCA+AGG - chr5_2:29318976-29318995 None:intergenic 60.0%
GAGGGGTGGCTTAAAGGGGT+AGG - chr5_2:29319031-29319050 None:intergenic 60.0%
CCTGGTCAGTCATCCTCAGG+GGG + chr5_2:29319106-29319125 Msa0766900:intron 60.0%
CTGGTCAGTCATCCTCAGGG+GGG + chr5_2:29319107-29319126 Msa0766900:intron 60.0%
GAGCCAGTTATGTGGGGGGT+GGG + chr5_2:29319232-29319251 Msa0766900:intron 60.0%
AGCCAGTTATGTGGGGGGTG+GGG + chr5_2:29319233-29319252 Msa0766900:intron 60.0%
! CTGAGCGGCGAAGATAGCGG+CGG - chr5_2:29316562-29316581 None:intergenic 65.0%
CCCCCTGAGGATGACTGACC+AGG - chr5_2:29319109-29319128 None:intergenic 65.0%
ACTCAGGGGATACCCCCCTG+AGG - chr5_2:29319122-29319141 None:intergenic 65.0%
GGAGCCAGTTATGTGGGGGG+TGG + chr5_2:29319231-29319250 Msa0766900:intron 65.0%
GCCAGTTATGTGGGGGGTGG+GGG + chr5_2:29319234-29319253 Msa0766900:intron 65.0%
CCAGTTATGTGGGGGGTGGG+GGG + chr5_2:29319235-29319254 Msa0766900:intron 65.0%
CAGTTATGTGGGGGGTGGGG+GGG + chr5_2:29319236-29319255 Msa0766900:intron 65.0%
AGTTATGTGGGGGGTGGGGG+GGG + chr5_2:29319237-29319256 Msa0766900:intron 65.0%
! GGTGATGGTGCCCCAGTCGA+AGG + chr5_2:29319287-29319306 Msa0766900:intron 65.0%
ATGGTGCCCCAGTCGAAGGC+AGG + chr5_2:29319291-29319310 Msa0766900:intron 65.0%
TGGTGCCCCAGTCGAAGGCA+GGG + chr5_2:29319292-29319311 Msa0766900:intron 65.0%
! AGCGGCGAAGATAGCGGCGG+TGG - chr5_2:29316559-29316578 None:intergenic 70.0%
CGCCGCTATCTTCGCCGCTC+AGG + chr5_2:29316560-29316579 Msa0766900:five_prime_UTR 70.0%
CCCCCCACCCCCCACATAAC+TGG - chr5_2:29319238-29319257 None:intergenic 70.0%
GTTATGTGGGGGGTGGGGGG+GGG + chr5_2:29319238-29319257 Msa0766900:intron 70.0%
TTATGTGGGGGGTGGGGGGG+GGG + chr5_2:29319239-29319258 Msa0766900:intron 70.0%
TATGTGGGGGGTGGGGGGGG+GGG + chr5_2:29319240-29319259 Msa0766900:intron 75.0%
! ATGTGGGGGGTGGGGGGGGG+GGG + chr5_2:29319241-29319260 Msa0766900:intron 80.0%
! GGGGGGGGTGGAGGGGGTGA+TGG + chr5_2:29319272-29319291 Msa0766900:intron 80.0%
! TGTGGGGGGTGGGGGGGGGG+GGG + chr5_2:29319242-29319261 Msa0766900:intron 85.0%
! GTGGGGGGTGGGGGGGGGGG+GGG + chr5_2:29319243-29319262 Msa0766900:intron 90.0%
! TGGGGGGTGGGGGGGGGGGG+GGG + chr5_2:29319244-29319263 Msa0766900:intron 90.0%
! GGGGGGGGGGGGGGGGTGGA+GGG + chr5_2:29319264-29319283 Msa0766900:intron 90.0%
! GGGGGGGGGGGGGGGTGGAG+GGG + chr5_2:29319265-29319284 Msa0766900:intron 90.0%
! GGGGGGGGGGGGGGTGGAGG+GGG + chr5_2:29319266-29319285 Msa0766900:intron 90.0%
! GGGGGGTGGGGGGGGGGGGG+GGG + chr5_2:29319245-29319264 Msa0766900:intron 95.0%
! GGGGGTGGGGGGGGGGGGGG+GGG + chr5_2:29319246-29319265 Msa0766900:intron 95.0%
! GGGGTGGGGGGGGGGGGGGG+GGG + chr5_2:29319247-29319266 Msa0766900:intron 95.0%
! GGGTGGGGGGGGGGGGGGGG+GGG + chr5_2:29319248-29319267 Msa0766900:intron 95.0%
! GGTGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319249-29319268 Msa0766900:intron 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319250-29319269 Msa0766900:intron 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr5_2:29319251-29319270 Msa0766900:intron 95.0%
! GGGGGGGGGGGGGGGGGTGG+AGG + chr5_2:29319263-29319282 Msa0766900:intron 95.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 29316313 29319966 29316313 ID=Msa0766900;Name=Msa0766900
chr5_2 mRNA 29316313 29319966 29316313 ID=Msa0766900-mRNA-1;Parent=Msa0766900;Name=Msa0766900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=400|1|1|1|0.8|0.66|6|877|103
chr5_2 exon 29316313 29316581 29316313 ID=Msa0766900-mRNA-1:exon:11181;Parent=Msa0766900-mRNA-1
chr5_2 exon 29316758 29316888 29316758 ID=Msa0766900-mRNA-1:exon:11182;Parent=Msa0766900-mRNA-1
chr5_2 exon 29316965 29317039 29316965 ID=Msa0766900-mRNA-1:exon:11183;Parent=Msa0766900-mRNA-1
chr5_2 exon 29317187 29317628 29317187 ID=Msa0766900-mRNA-1:exon:11184;Parent=Msa0766900-mRNA-1
chr5_2 exon 29317785 29318204 29317785 ID=Msa0766900-mRNA-1:exon:11185;Parent=Msa0766900-mRNA-1
chr5_2 exon 29319715 29319966 29319715 ID=Msa0766900-mRNA-1:exon:11186;Parent=Msa0766900-mRNA-1
chr5_2 five_prime_UTR 29316313 29316581 29316313 ID=Msa0766900-mRNA-1:five_prime_utr;Parent=Msa0766900-mRNA-1
chr5_2 five_prime_UTR 29316758 29316888 29316758 ID=Msa0766900-mRNA-1:five_prime_utr;Parent=Msa0766900-mRNA-1
chr5_2 CDS 29316965 29317039 29316965 ID=Msa0766900-mRNA-1:cds;Parent=Msa0766900-mRNA-1
chr5_2 CDS 29317187 29317423 29317187 ID=Msa0766900-mRNA-1:cds;Parent=Msa0766900-mRNA-1
chr5_2 three_prime_UTR 29317424 29317628 29317424 ID=Msa0766900-mRNA-1:three_prime_utr;Parent=Msa0766900-mRNA-1
chr5_2 three_prime_UTR 29317785 29318204 29317785 ID=Msa0766900-mRNA-1:three_prime_utr;Parent=Msa0766900-mRNA-1
chr5_2 three_prime_UTR 29319715 29319966 29319715 ID=Msa0766900-mRNA-1:three_prime_utr;Parent=Msa0766900-mRNA-1
Gene Sequence

>Msa0766900

ATGCTTCTTGAACCCCTAACACTTCTGAAGCAAGCAGATGCCCAGCTTAATATGACTCAAGGCACACTTGGAGGGATTGTGGGAGAGGAGCTTGGCATCCTTCCTGGAATGGACTCAATCTTTTCGGTACTTGCACTTGAGAGGCTTGTAGGGTTTTTGGGGATGGGATCTTCAAAGAGTCAACAAGATAAATTTGACGTAATAATATACGATGGTGTCAGCAGCGAGGAAACCTTGAGAATCATGGGTGGAAGCAGTAAAGCAAGGTTTTGGAATTGCTACTTTTTATCTAACAGACAAACATATCCTTGA

Protein sequence

>Msa0766900

MLLEPLTLLKQADAQLNMTQGTLGGIVGEELGILPGMDSIFSVLALERLVGFLGMGSSKSQQDKFDVIIYDGVSSEETLRIMGGSSKARFWNCYFLSNRQTYP*