AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1194300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194300 MtrunA17_Chr8g0364551 91.908 173 12 2 1 172 1 172 5.56e-100 285
Msa1194300 MtrunA17_Chr8g0364581 50.000 118 56 1 51 165 60 177 5.31e-36 123
Msa1194300 MtrunA17_Chr2g0329721 97.619 42 1 0 131 172 1 42 3.95e-26 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194300 AT1G10522.1 60.976 164 55 3 7 169 24 179 1.14e-66 201
Msa1194300 AT1G10522.2 60.976 164 55 3 7 169 24 179 1.14e-66 201

Find 47 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAACGAGAGACACTTTAT+TGG 0.303926 8_1:+41487334 None:intergenic
GAATCAGCAAATTGAGGAAT+TGG 0.320907 8_1:+41489875 None:intergenic
TTTGCATTTGGTAGTGGTTT+GGG 0.340802 8_1:+41490003 None:intergenic
ACATTCTTACATTCTGAGTA+TGG 0.355591 8_1:-41487516 Msa1194300:CDS
CTGCGCGTACTGCTATCAAT+TGG 0.368089 8_1:-41487410 Msa1194300:CDS
TGAGAAACGTTGTTTGCATT+TGG 0.378977 8_1:+41489991 None:intergenic
GTTTGCATTTGGTAGTGGTT+TGG 0.391225 8_1:+41490002 None:intergenic
GAATCAGTTGAAGAAGTTGT+TGG 0.395209 8_1:-41489712 Msa1194300:CDS
GTGACCTTTCTGTTTATTGA+AGG 0.403119 8_1:+41489965 None:intergenic
GAAGAAGAAGGAATGAGAAA+TGG 0.412245 8_1:+41490049 None:intergenic
CGCGCAGCTTGCGGTCCTCC+AGG 0.421440 8_1:+41487426 None:intergenic
AACTCTTTGGAGTTAGCTAT+AGG 0.437242 8_1:-41490125 Msa1194300:five_prime_UTR
GAAGAATGGCTTCATCTACT+TGG 0.441198 8_1:-41490081 Msa1194300:exon
GCAAATTGAGGAATTGGGTC+AGG 0.441374 8_1:+41489881 None:intergenic
AACATAGTGCTCGAAGCATT+TGG 0.442267 8_1:-41487149 Msa1194300:three_prime_UTR
TGGAGGTCCTGGCACACTCT+TGG 0.449320 8_1:-41487496 Msa1194300:CDS
GCACTGCAAACTTTGAAGAA+TGG 0.454550 8_1:-41490095 Msa1194300:exon
GGTTGATCCTTTCGTTGACA+TGG 0.470818 8_1:-41487475 Msa1194300:CDS
CATTCTGAGTATGGAGGTCC+TGG 0.481112 8_1:-41487507 Msa1194300:CDS
GGATCAACCAAGAGTGTGCC+AGG 0.491950 8_1:+41487489 None:intergenic
CCTACGATCATTCTAAACTA+AGG 0.494622 8_1:+41487217 None:intergenic
ACGTTGTTTGCATTTGGTAG+TGG 0.495989 8_1:+41489997 None:intergenic
AATCAGCAAATTGAGGAATT+GGG 0.496618 8_1:+41489876 None:intergenic
TGCGCGTACTGCTATCAATT+GGG 0.497209 8_1:-41487409 Msa1194300:CDS
CATTCCAGTCCTTGTCAACA+TGG 0.498066 8_1:+41487379 None:intergenic
GAAGGAATTGAAGAAGAAGA+AGG 0.506922 8_1:+41490037 None:intergenic
AAGCCCATGTTGACAAGGAC+TGG 0.508359 8_1:-41487383 Msa1194300:CDS
ATTTCCTTCAATAAACAGAA+AGG 0.515763 8_1:-41489969 Msa1194300:CDS
CTCAGCAGCAGCTCTAGTAA+TGG 0.525497 8_1:+41489913 None:intergenic
GCTGATATTGTAAACGAAAG+AGG 0.526912 8_1:-41487453 Msa1194300:CDS
TTGAAAGCTTATTGAGAAGG+TGG 0.544406 8_1:+41489752 None:intergenic
CTTACGGAATCAGCAAATTG+AGG 0.550268 8_1:+41489869 None:intergenic
TTGACAAGGACTGGAATGAA+TGG 0.551690 8_1:-41487374 Msa1194300:CDS
TCTTTGAAAGCTTATTGAGA+AGG 0.554547 8_1:+41489749 None:intergenic
GTAAACGAAAGAGGATTGCC+TGG 0.563165 8_1:-41487444 Msa1194300:CDS
ATTCCAGTCCTTGTCAACAT+GGG 0.576970 8_1:+41487380 None:intergenic
GGCACAAGCCCATGTTGACA+AGG 0.594589 8_1:-41487388 Msa1194300:CDS
ATAGCAGTACGCGCAGCTTG+CGG 0.618963 8_1:+41487417 None:intergenic
CAAATTGAGGAATTGGGTCA+GGG 0.622665 8_1:+41489882 None:intergenic
ATATCAGCCATGTCAACGAA+AGG 0.624747 8_1:+41487468 None:intergenic
CCTTAGTTTAGAATGATCGT+AGG 0.641280 8_1:-41487217 Msa1194300:three_prime_UTR
GACTGGAATGAATGGACAGG+TGG 0.643824 8_1:-41487366 Msa1194300:CDS
TTCTTACATTCTGAGTATGG+AGG 0.645387 8_1:-41487513 Msa1194300:CDS
AAGGACTGGAATGAATGGAC+AGG 0.650369 8_1:-41487369 Msa1194300:CDS
GTTTGGGAGAAGCATAGCGA+AGG 0.664504 8_1:+41490019 None:intergenic
AACGAAAGAGGATTGCCTGG+AGG 0.721934 8_1:-41487441 Msa1194300:CDS
AGTTGTTGGAGTTTGCACTG+AGG 0.736052 8_1:-41489698 Msa1194300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAAAAAATAAAAAGT+GGG + chr8_1:41487423-41487442 None:intergenic 10.0%
!!! TATTTTCAAAAAATAAAAAG+TGG + chr8_1:41487424-41487443 None:intergenic 10.0%
!!! CTATAATTTAAAATTAGTTT+TGG - chr8_1:41488507-41488526 Msa1194300:intron 10.0%
!!! ATAAATAATCTTTTTGTTTG+TGG - chr8_1:41487441-41487460 Msa1194300:CDS 15.0%
!!! TAAATAATCTTTTTGTTTGT+GGG - chr8_1:41487442-41487461 Msa1194300:CDS 15.0%
!!! TATATAAGTATATTTTCGTA+AGG + chr8_1:41487725-41487744 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+TGG + chr8_1:41488238-41488257 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr8_1:41488146-41488165 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - chr8_1:41488046-41488065 Msa1194300:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr8_1:41488237-41488256 Msa1194300:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr8_1:41488238-41488257 Msa1194300:intron 15.0%
!! AAAATCATAAACATAAATGA+AGG + chr8_1:41488902-41488921 None:intergenic 15.0%
!! AAAAAAAGAGAGAAAACTTA+CGG + chr8_1:41487393-41487412 None:intergenic 20.0%
!! ATTACTAAACAAAAGAAAGA+GGG + chr8_1:41487627-41487646 None:intergenic 20.0%
!! AATTACTAAACAAAAGAAAG+AGG + chr8_1:41487628-41487647 None:intergenic 20.0%
!!! ATGTATTTTGTTTGTCATTT+TGG - chr8_1:41487744-41487763 Msa1194300:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - chr8_1:41488081-41488100 Msa1194300:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr8_1:41488175-41488194 Msa1194300:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr8_1:41488176-41488195 Msa1194300:intron 20.0%
!!! TTTGGAATCTCAATATATTT+AGG - chr8_1:41488427-41488446 Msa1194300:intron 20.0%
!! TTGGAATCTCAATATATTTA+GGG - chr8_1:41488428-41488447 Msa1194300:intron 20.0%
!! TTCTTTCAATCAACTAATTA+AGG - chr8_1:41489072-41489091 Msa1194300:intron 20.0%
! ATTTCCTTCAATAAACAGAA+AGG - chr8_1:41487274-41487293 Msa1194300:three_prime_UTR 25.0%
!!! TTTTGTTTGTCATTTTGGTT+AGG - chr8_1:41487749-41487768 Msa1194300:intron 25.0%
!!! TTTGTTTGTCATTTTGGTTA+GGG - chr8_1:41487750-41487769 Msa1194300:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr8_1:41487886-41487905 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr8_1:41487887-41487906 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG - chr8_1:41488209-41488228 Msa1194300:intron 25.0%
!! AGAAACATAATTAACCCTTT+TGG - chr8_1:41488295-41488314 Msa1194300:intron 25.0%
! CATGTATTAGCAAAATCTAT+AGG - chr8_1:41488990-41489009 Msa1194300:intron 25.0%
!! TAGTACACCTAAACTATTTT+TGG - chr8_1:41489616-41489635 Msa1194300:intron 25.0%
AATCAGCAAATTGAGGAATT+GGG + chr8_1:41487370-41487389 None:intergenic 30.0%
! TCTTTGAAAGCTTATTGAGA+AGG + chr8_1:41487497-41487516 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr8_1:41488268-41488287 None:intergenic 30.0%
! AAGTATGGACTAAACTTACA+AGG + chr8_1:41487809-41487828 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr8_1:41487949-41487968 Msa1194300:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG - chr8_1:41488208-41488227 Msa1194300:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr8_1:41488268-41488287 Msa1194300:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr8_1:41488269-41488288 Msa1194300:intron 30.0%
TCATGCATTAAACTGACTAA+GGG + chr8_1:41488376-41488395 None:intergenic 30.0%
TTCATGCATTAAACTGACTA+AGG + chr8_1:41488377-41488396 None:intergenic 30.0%
TATAGAGTAAACAGTTACCA+TGG + chr8_1:41488492-41488511 None:intergenic 30.0%
GGAAAGATGTCATATTTGAA+GGG - chr8_1:41488529-41488548 Msa1194300:intron 30.0%
GAAAGATGTCATATTTGAAG+GGG - chr8_1:41488530-41488549 Msa1194300:intron 30.0%
ATACTTCAGTGACTTAGAAA+TGG + chr8_1:41488699-41488718 None:intergenic 30.0%
! TGAAGTATTTCCCTATTTGA+AGG - chr8_1:41488711-41488730 Msa1194300:intron 30.0%
! GAAGTATTTCCCTATTTGAA+GGG - chr8_1:41488712-41488731 Msa1194300:intron 30.0%
TGTTCATCAAAGTCATAGAA+AGG + chr8_1:41488741-41488760 None:intergenic 30.0%
TCTATGACTTTGATGAACAT+AGG - chr8_1:41488742-41488761 Msa1194300:intron 30.0%
CTATGACTTTGATGAACATA+GGG - chr8_1:41488743-41488762 Msa1194300:intron 30.0%
ATGAAGGATCATTCACATAA+CGG + chr8_1:41488886-41488905 None:intergenic 30.0%
TTTCCAAATAGCAGTTATAG+TGG - chr8_1:41489249-41489268 Msa1194300:intron 30.0%
TTGCAAAATTTGATCAACCA+GGG - chr8_1:41489290-41489309 Msa1194300:intron 30.0%
TGAAGCTCCAAAAATAGTTT+AGG + chr8_1:41489626-41489645 None:intergenic 30.0%
ACATTCTTACATTCTGAGTA+TGG - chr8_1:41489727-41489746 Msa1194300:CDS 30.0%
!! AACTCTTTGGAGTTAGCTAT+AGG - chr8_1:41487118-41487137 Msa1194300:three_prime_UTR 35.0%
GAAGAAGAAGGAATGAGAAA+TGG + chr8_1:41487197-41487216 None:intergenic 35.0%
GAAGGAATTGAAGAAGAAGA+AGG + chr8_1:41487209-41487228 None:intergenic 35.0%
!! TTTGCATTTGGTAGTGGTTT+GGG + chr8_1:41487243-41487262 None:intergenic 35.0%
TGAGAAACGTTGTTTGCATT+TGG + chr8_1:41487255-41487274 None:intergenic 35.0%
GTGACCTTTCTGTTTATTGA+AGG + chr8_1:41487281-41487300 None:intergenic 35.0%
GAATCAGCAAATTGAGGAAT+TGG + chr8_1:41487371-41487390 None:intergenic 35.0%
!! TCTTTTTGTTTGTGGGTTTC+AGG - chr8_1:41487449-41487468 Msa1194300:CDS 35.0%
TTGAAAGCTTATTGAGAAGG+TGG + chr8_1:41487494-41487513 None:intergenic 35.0%
GAATCAGTTGAAGAAGTTGT+TGG - chr8_1:41487531-41487550 Msa1194300:intron 35.0%
!! TTATGAGTAGCCTGTCATTT+TGG - chr8_1:41487698-41487717 Msa1194300:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr8_1:41488253-41488272 Msa1194300:intron 35.0%
TACACTCACGATAACCAAAA+GGG + chr8_1:41488312-41488331 None:intergenic 35.0%
! AAACACTCTTGCAGAGTTTT+TGG - chr8_1:41488409-41488428 Msa1194300:intron 35.0%
GGGAAAGATGTCATATTTGA+AGG - chr8_1:41488528-41488547 Msa1194300:intron 35.0%
TCATATTTGAAGGGGATACA+GGG - chr8_1:41488538-41488557 Msa1194300:intron 35.0%
TCATCAAAGTCATAGAAAGG+AGG + chr8_1:41488738-41488757 None:intergenic 35.0%
GAAACAAAAGTGATCTGTTC+AGG + chr8_1:41489144-41489163 None:intergenic 35.0%
TGTTTCGTGATCCACTATTT+AGG - chr8_1:41489158-41489177 Msa1194300:intron 35.0%
CAACACTTTGTCCTAAATAG+TGG + chr8_1:41489172-41489191 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+TGG - chr8_1:41489189-41489208 Msa1194300:intron 35.0%
GTTGCAAAATTTGATCAACC+AGG - chr8_1:41489289-41489308 Msa1194300:intron 35.0%
TTCTTACATTCTGAGTATGG+AGG - chr8_1:41489730-41489749 Msa1194300:CDS 35.0%
GCTGATATTGTAAACGAAAG+AGG - chr8_1:41489790-41489809 Msa1194300:intron 35.0%
TACAACGAGAGACACTTTAT+TGG + chr8_1:41489912-41489931 None:intergenic 35.0%
CCTACGATCATTCTAAACTA+AGG + chr8_1:41490029-41490048 None:intergenic 35.0%
! CCTTAGTTTAGAATGATCGT+AGG - chr8_1:41490026-41490045 Msa1194300:CDS 35.0%
! GCACTGCAAACTTTGAAGAA+TGG - chr8_1:41487148-41487167 Msa1194300:three_prime_UTR 40.0%
GAAGAATGGCTTCATCTACT+TGG - chr8_1:41487162-41487181 Msa1194300:three_prime_UTR 40.0%
!! GTTTGCATTTGGTAGTGGTT+TGG + chr8_1:41487244-41487263 None:intergenic 40.0%
ACGTTGTTTGCATTTGGTAG+TGG + chr8_1:41487249-41487268 None:intergenic 40.0%
! GAGCGTTTTGTGGATGAAAA+GGG + chr8_1:41487311-41487330 None:intergenic 40.0%
!! TCTAGTAATGGAGCGTTTTG+TGG + chr8_1:41487321-41487340 None:intergenic 40.0%
CAAATTGAGGAATTGGGTCA+GGG + chr8_1:41487364-41487383 None:intergenic 40.0%
CTTACGGAATCAGCAAATTG+AGG + chr8_1:41487377-41487396 None:intergenic 40.0%
TTCGTAAGGACCAAAATGAC+AGG + chr8_1:41487711-41487730 None:intergenic 40.0%
GTACACTCACGATAACCAAA+AGG + chr8_1:41488313-41488332 None:intergenic 40.0%
TGGTTCCTAAATGTGTGACA+CGG + chr8_1:41488472-41488491 None:intergenic 40.0%
TGTCACACATTTAGGAACCA+TGG - chr8_1:41488472-41488491 Msa1194300:intron 40.0%
GTCATATTTGAAGGGGATAC+AGG - chr8_1:41488537-41488556 Msa1194300:intron 40.0%
!! TGACTTAGAAATGGTGCCAT+TGG + chr8_1:41488690-41488709 None:intergenic 40.0%
AGTTGAACACATCCAAAGCA+GGG + chr8_1:41488856-41488875 None:intergenic 40.0%
AAGTTGAACACATCCAAAGC+AGG + chr8_1:41488857-41488876 None:intergenic 40.0%
GCACCACTATAACTGCTATT+TGG + chr8_1:41489255-41489274 None:intergenic 40.0%
ATGACAACATGTGGACATAG+CGG + chr8_1:41489382-41489401 None:intergenic 40.0%
CTACTCTACATGACAACATG+TGG + chr8_1:41489391-41489410 None:intergenic 40.0%
GTCATGTAGAGTAGAGTCTA+TGG - chr8_1:41489397-41489416 Msa1194300:intron 40.0%
ATGTAGAGTAGAGTCTATGG+TGG - chr8_1:41489400-41489419 Msa1194300:intron 40.0%
GTTATAGAACTGTAGCGTAG+CGG - chr8_1:41489424-41489443 Msa1194300:intron 40.0%
!! AAACCAAAGGTAGTGGAGAA+AGG + chr8_1:41489548-41489567 None:intergenic 40.0%
TGCATGAAAACCAAAGGTAG+TGG + chr8_1:41489555-41489574 None:intergenic 40.0%
AGTCGTTGCATGAAAACCAA+AGG + chr8_1:41489561-41489580 None:intergenic 40.0%
! CATACTTACCTTGTTTCCTG+CGG - chr8_1:41489667-41489686 Msa1194300:intron 40.0%
ATATCAGCCATGTCAACGAA+AGG + chr8_1:41489778-41489797 None:intergenic 40.0%
ATTCCAGTCCTTGTCAACAT+GGG + chr8_1:41489866-41489885 None:intergenic 40.0%
TTGACAAGGACTGGAATGAA+TGG - chr8_1:41489869-41489888 Msa1194300:intron 40.0%
! AACATAGTGCTCGAAGCATT+TGG - chr8_1:41490094-41490113 Msa1194300:exon 40.0%
!! GGAGCGTTTTGTGGATGAAA+AGG + chr8_1:41487312-41487331 None:intergenic 45.0%
GCAAATTGAGGAATTGGGTC+AGG + chr8_1:41487365-41487384 None:intergenic 45.0%
TGTTTGTGGGTTTCAGGAGA+CGG - chr8_1:41487455-41487474 Msa1194300:CDS 45.0%
AGTTGTTGGAGTTTGCACTG+AGG - chr8_1:41487545-41487564 Msa1194300:intron 45.0%
TGACACCGTGTCACACATTT+AGG - chr8_1:41488464-41488483 Msa1194300:intron 45.0%
!! TTCCACTTTGGTGCCATCAA+TGG - chr8_1:41488561-41488580 Msa1194300:intron 45.0%
!! ATGGAATTGGATGGTGCCAT+TGG + chr8_1:41488589-41488608 None:intergenic 45.0%
GAAAGGAGGCCCTTCAAATA+GGG + chr8_1:41488724-41488743 None:intergenic 45.0%
AGAAAGGAGGCCCTTCAAAT+AGG + chr8_1:41488725-41488744 None:intergenic 45.0%
CGCAGGAAACAAGGTAAGTA+TGG + chr8_1:41489669-41489688 None:intergenic 45.0%
ATCATAGTCACAGAATCCGC+AGG + chr8_1:41489686-41489705 None:intergenic 45.0%
GGTTGATCCTTTCGTTGACA+TGG - chr8_1:41489768-41489787 Msa1194300:CDS 45.0%
GTAAACGAAAGAGGATTGCC+TGG - chr8_1:41489799-41489818 Msa1194300:intron 45.0%
TGCGCGTACTGCTATCAATT+GGG - chr8_1:41489834-41489853 Msa1194300:intron 45.0%
CATTCCAGTCCTTGTCAACA+TGG + chr8_1:41489867-41489886 None:intergenic 45.0%
AAGGACTGGAATGAATGGAC+AGG - chr8_1:41489874-41489893 Msa1194300:CDS 45.0%
!!! TAAGTAATTTTTTTTTTATA+GGG + chr8_1:41487853-41487872 None:intergenic 5.0%
!!! ATAAGTAATTTTTTTTTTAT+AGG + chr8_1:41487854-41487873 None:intergenic 5.0%
!!! TATAATTTAAAATTAGTTTT+GGG - chr8_1:41488508-41488527 Msa1194300:intron 5.0%
! GTTTGGGAGAAGCATAGCGA+AGG + chr8_1:41487227-41487246 None:intergenic 50.0%
! CTCAGCAGCAGCTCTAGTAA+TGG + chr8_1:41487333-41487352 None:intergenic 50.0%
GTTGGAGTTTGCACTGAGGT+CGG - chr8_1:41487549-41487568 Msa1194300:intron 50.0%
! TGCCATTGATGGCACCAAAG+TGG + chr8_1:41488566-41488585 None:intergenic 50.0%
! GTGGTGGAGATGGAATTGGA+TGG + chr8_1:41488598-41488617 None:intergenic 50.0%
! GTGTGTGGTGGAGATGGAAT+TGG + chr8_1:41488602-41488621 None:intergenic 50.0%
! ATGTGTGTGTGTGGTGGAGA+TGG + chr8_1:41488608-41488627 None:intergenic 50.0%
TGTGTGATGTGTGTGTGTGG+TGG + chr8_1:41488614-41488633 None:intergenic 50.0%
GTGTGTGTGATGTGTGTGTG+TGG + chr8_1:41488617-41488636 None:intergenic 50.0%
GATCTCTGCTATGGCACCAA+TGG - chr8_1:41488671-41488690 Msa1194300:intron 50.0%
CATTCCTTGTCACCCTGCTT+TGG - chr8_1:41488841-41488860 Msa1194300:intron 50.0%
ACATCCAAAGCAGGGTGACA+AGG + chr8_1:41488848-41488867 None:intergenic 50.0%
CAGCAGCTATTTGACATCCC+TGG + chr8_1:41489310-41489329 None:intergenic 50.0%
GTGTTGTCAATCGCAGATCG+CGG + chr8_1:41489472-41489491 None:intergenic 50.0%
CAGCCTTTCTCCACTACCTT+TGG - chr8_1:41489542-41489561 Msa1194300:intron 50.0%
CACAGAATCCGCAGGAAACA+AGG + chr8_1:41489678-41489697 None:intergenic 50.0%
CATTCTGAGTATGGAGGTCC+TGG - chr8_1:41489736-41489755 Msa1194300:CDS 50.0%
AACGAAAGAGGATTGCCTGG+AGG - chr8_1:41489802-41489821 Msa1194300:intron 50.0%
CTGCGCGTACTGCTATCAAT+TGG - chr8_1:41489833-41489852 Msa1194300:intron 50.0%
AAGCCCATGTTGACAAGGAC+TGG - chr8_1:41489860-41489879 Msa1194300:intron 50.0%
GACTGGAATGAATGGACAGG+TGG - chr8_1:41489877-41489896 Msa1194300:CDS 50.0%
GGGGATACAGGGTTCCACTT+TGG - chr8_1:41488549-41488568 Msa1194300:intron 55.0%
! GGTGCCATCAATGGCACCAA+TGG - chr8_1:41488570-41488589 Msa1194300:intron 55.0%
!! GGTGCCATTGGTGCCATTGA+TGG + chr8_1:41488577-41488596 None:intergenic 55.0%
ATCACACACACATCCCCACG+CGG - chr8_1:41488626-41488645 Msa1194300:intron 55.0%
TCCTGGCCGTTGATGTGTGT+GGG + chr8_1:41488653-41488672 None:intergenic 55.0%
ATCCTGGCCGTTGATGTGTG+TGG + chr8_1:41488654-41488673 None:intergenic 55.0%
AACGGCCAGGATCTCTGCTA+TGG - chr8_1:41488662-41488681 Msa1194300:intron 55.0%
!! TGGTGCCATAGCAGAGATCC+TGG + chr8_1:41488670-41488689 None:intergenic 55.0%
AGCGGATCGCGGAACAATAG+TGG + chr8_1:41489364-41489383 None:intergenic 55.0%
!! CATGTGGACATAGCGGATCG+CGG + chr8_1:41489375-41489394 None:intergenic 55.0%
TCGCAGATCGCGGAAGATAG+CGG + chr8_1:41489462-41489481 None:intergenic 55.0%
GGAGAAAGGCTGCGTCTAGA+TGG + chr8_1:41489534-41489553 None:intergenic 55.0%
! GGATCAACCAAGAGTGTGCC+AGG + chr8_1:41489757-41489776 None:intergenic 55.0%
ATAGCAGTACGCGCAGCTTG+CGG + chr8_1:41489829-41489848 None:intergenic 55.0%
GGCACAAGCCCATGTTGACA+AGG - chr8_1:41489855-41489874 Msa1194300:intron 55.0%
TGATGTGTGTGGGTCCGCGT+GGG + chr8_1:41488643-41488662 None:intergenic 60.0%
TTGATGTGTGTGGGTCCGCG+TGG + chr8_1:41488644-41488663 None:intergenic 60.0%
CGCGGACCCACACACATCAA+CGG - chr8_1:41488644-41488663 Msa1194300:intron 60.0%
ACCCACACACATCAACGGCC+AGG - chr8_1:41488649-41488668 Msa1194300:intron 60.0%
TGGAGGTCCTGGCACACTCT+TGG - chr8_1:41489747-41489766 Msa1194300:CDS 60.0%
GATGTGTGTGGGTCCGCGTG+GGG + chr8_1:41488642-41488661 None:intergenic 65.0%
CGCGCAGCTTGCGGTCCTCC+AGG + chr8_1:41489820-41489839 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 41487117 41490148 41487117 ID=Msa1194300;Name=Msa1194300
chr8_1 mRNA 41487117 41490148 41487117 ID=Msa1194300-mRNA-1;Parent=Msa1194300;Name=Msa1194300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|1|1|3|233|172
chr8_1 exon 41487117 41487547 41487117 ID=Msa1194300-mRNA-1:exon:13404;Parent=Msa1194300-mRNA-1
chr8_1 exon 41489699 41489794 41489699 ID=Msa1194300-mRNA-1:exon:13403;Parent=Msa1194300-mRNA-1
chr8_1 exon 41489874 41490148 41489874 ID=Msa1194300-mRNA-1:exon:13402;Parent=Msa1194300-mRNA-1
chr8_1 five_prime_UTR 41490099 41490148 41490099 ID=Msa1194300-mRNA-1:five_prime_utr;Parent=Msa1194300-mRNA-1
chr8_1 CDS 41489874 41490098 41489874 ID=Msa1194300-mRNA-1:cds;Parent=Msa1194300-mRNA-1
chr8_1 CDS 41489699 41489794 41489699 ID=Msa1194300-mRNA-1:cds;Parent=Msa1194300-mRNA-1
chr8_1 CDS 41487350 41487547 41487350 ID=Msa1194300-mRNA-1:cds;Parent=Msa1194300-mRNA-1
chr8_1 three_prime_UTR 41487117 41487349 41487117 ID=Msa1194300-mRNA-1:three_prime_utr;Parent=Msa1194300-mRNA-1
Gene Sequence

>Msa1194300

ATGGCTTCATCTACTTGGTGTCTTGTACCATTTCTCATTCCTTCTTCTTCTTCAATTCCTTCGCTATGCTTCTCCCAAACCACTACCAAATGCAAACAACGTTTCTCATTTCCTTCAATAAACAGAAAGGTCACAACTTTACCCTTTTCATCCACAAAACGCTCCATTACTAGAGCTGCTGCTGAGTACAAATTCCCTGACCCAATTCCTCAATTTGCTGATTCCGAGACGGAAAAATTTCAAAACCACCTTCTCAATAAGCTTTCAAAGAAAGATATCTTTGAAGAATCAGTTGAAGAAGTTGTTGGAGTTTGCACTGAGATTTTCAGCACATTCTTACATTCTGAGTATGGAGGTCCTGGCACACTCTTGGTTGATCCTTTCGTTGACATGGCTGATATTGTAAACGAAAGAGGATTGCCTGGAGGACCGCAAGCTGCGCGTACTGCTATCAATTGGGCACAAGCCCATGTTGACAAGGACTGGAATGAATGGACAGGTGGTAATAGCAACCAATAA

Protein sequence

>Msa1194300

MASSTWCLVPFLIPSSSSIPSLCFSQTTTKCKQRFSFPSINRKVTTLPFSSTKRSITRAAAEYKFPDPIPQFADSETEKFQNHLLNKLSKKDIFEESVEEVVGVCTEIFSTFLHSEYGGPGTLLVDPFVDMADIVNERGLPGGPQAARTAINWAQAHVDKDWNEWTGGNSNQ*