AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0633720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633720 MtrunA17_Chr4g0025891 96.277 188 7 0 1 188 1 188 2.68e-130 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633720 AT2G27290.1 62.304 191 56 4 4 181 3 190 4.79e-62 191

Find 46 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGTCATTGTTGGGTACT+TGG 0.268842 4_3:+19499786 None:intergenic
TACTTCTTGGTTACTTCTTC+AGG 0.280999 4_3:+19499592 None:intergenic
ACAAAGCTGCATCTCCAATT+AGG 0.288679 4_3:-19498327 Msa0633720:CDS
AGCTATTGTTGACAGTAATA+TGG 0.296152 4_3:+19498117 None:intergenic
TTGATTATCAAGATTGTATA+GGG 0.301442 4_3:+19499846 None:intergenic
AAGGAGTTGCTGGCAAAATA+TGG 0.314060 4_3:-19498610 Msa0633720:CDS
ATCTTTCTTTCTTTCTCTGT+TGG 0.335428 4_3:-19499890 Msa0633720:five_prime_UTR
AGCTTCAAGACCATACTTCT+TGG 0.339383 4_3:+19499579 None:intergenic
ATGGTCTTGAAGCTGGTCTT+TGG 0.345812 4_3:-19499570 Msa0633720:CDS
GGAGATGAAAATATGATTAC+AGG 0.350066 4_3:+19498183 None:intergenic
TTTGATTATCAAGATTGTAT+AGG 0.354084 4_3:+19499845 None:intergenic
ACTGTGGGTGGAAACCTAAT+TGG 0.379765 4_3:+19498313 None:intergenic
AAAAGTCGGTACCTTTGCTT+TGG 0.406424 4_3:-19498362 Msa0633720:CDS
TGATCAAGCCAAGGAGTTGC+TGG 0.407305 4_3:-19498620 Msa0633720:CDS
CAATCCAACCAGCTACGATT+GGG 0.413841 4_3:+19498281 None:intergenic
GAAGAAGTAACCAAGAAGTA+TGG 0.441811 4_3:-19499589 Msa0633720:CDS
ATTAGATTTACGTGACTGAA+TGG 0.446882 4_3:+19499687 None:intergenic
CCAATCCAACCAGCTACGAT+TGG 0.459512 4_3:+19498280 None:intergenic
TGTTATGTATTAATCAATGC+TGG 0.464473 4_3:-19498535 Msa0633720:CDS
CCAATCGTAGCTGGTTGGAT+TGG 0.470086 4_3:-19498280 Msa0633720:CDS
TTCAGGTGAAGAATTCTTTG+AGG 0.474321 4_3:+19499609 None:intergenic
AAGAAGTATGGTCTTGAAGC+TGG 0.499317 4_3:-19499577 Msa0633720:CDS
TGTTCAAACTTTGCTTCAGA+AGG 0.506472 4_3:-19498506 Msa0633720:intron
GCTCTTACCCCAATCGTAGC+TGG 0.519207 4_3:-19498289 Msa0633720:CDS
GGGGAACAACAGAAATCAAA+AGG 0.520589 4_3:-19498643 Msa0633720:CDS
GGAATCACTACTGATGCAAC+CGG 0.523755 4_3:-19498388 Msa0633720:CDS
TAAAGATAAGTAGCTAATAG+TGG 0.534351 4_3:-19498245 Msa0633720:exon
TTACCCCAATCGTAGCTGGT+TGG 0.540207 4_3:-19498285 Msa0633720:CDS
CTCAGAAAAGAAGCATAAGA+AGG 0.548373 4_3:+19499745 None:intergenic
TTTCAGTTCAAAGGAAGAAG+GGG 0.549822 4_3:-19498662 Msa0633720:CDS
AGAGATCAATGACAGAGTAA+TGG 0.554810 4_3:+19498567 None:intergenic
TCTTGAAGCTGGTCTTTGGA+AGG 0.564484 4_3:-19499566 Msa0633720:intron
GAATATTGTTTCCACAGTCG+TGG 0.574282 4_3:-19498150 Msa0633720:three_prime_UTR
GATTTACATGTCCACGACTG+TGG 0.584978 4_3:+19498139 None:intergenic
AAAGAAGCATAAGAAGGTGA+TGG 0.588002 4_3:+19499751 None:intergenic
CAATGACAGAGTAATGGAAG+TGG 0.589427 4_3:+19498573 None:intergenic
AAACAATATTCCTCTGCCAA+TGG 0.600004 4_3:+19498162 None:intergenic
ATCAAAAGGTGATCAAGCCA+AGG 0.614436 4_3:-19498629 Msa0633720:CDS
GGGGTAAGAGCTACTGTGGG+TGG 0.621082 4_3:+19498301 None:intergenic
TGCAGCATATGCCAAAGCAA+AGG 0.641846 4_3:+19498351 None:intergenic
GATTGGGGTAAGAGCTACTG+TGG 0.646696 4_3:+19498297 None:intergenic
AATCCAACCAGCTACGATTG+GGG 0.648062 4_3:+19498282 None:intergenic
ATTATACTACAATCAAACAC+TGG 0.651914 4_3:+19498210 None:intergenic
GAGTTGCTGGCAAAATATGG+AGG 0.682334 4_3:-19498607 Msa0633720:CDS
ATTGGGGTAAGAGCTACTGT+GGG 0.725389 4_3:+19498298 None:intergenic
AGCTGTTAAAGAGAAAACTG+AGG 0.740712 4_3:-19499644 Msa0633720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATGAAATTTCTCAATT+TGG + chr4_3:19498526-19498545 None:intergenic 15.0%
!!! ATTGAGAAATTTCATATTTT+TGG - chr4_3:19498527-19498546 Msa0633720:CDS 15.0%
!!! TTGAGAAATTTCATATTTTT+GGG - chr4_3:19498528-19498547 Msa0633720:CDS 15.0%
!! TCTAAATTTCTACTTTAAAT+TGG + chr4_3:19498963-19498982 None:intergenic 15.0%
!!! AAATATAAGTTGAGTTTTTA+AGG - chr4_3:19499089-19499108 Msa0633720:intron 15.0%
!! TGTTTGTAAAATGAAAATTA+TGG - chr4_3:19499295-19499314 Msa0633720:intron 15.0%
!! AAATATGAAATTTCTCAATT+TGG + chr4_3:19498526-19498545 None:intergenic 15.0%
!!! ATTGAGAAATTTCATATTTT+TGG - chr4_3:19498527-19498546 Msa0633720:CDS 15.0%
!!! TTGAGAAATTTCATATTTTT+GGG - chr4_3:19498528-19498547 Msa0633720:CDS 15.0%
!! TCTAAATTTCTACTTTAAAT+TGG + chr4_3:19498963-19498982 None:intergenic 15.0%
!!! AAATATAAGTTGAGTTTTTA+AGG - chr4_3:19499089-19499108 Msa0633720:intron 15.0%
!! TGTTTGTAAAATGAAAATTA+TGG - chr4_3:19499295-19499314 Msa0633720:intron 15.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_3:19498149-19498168 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_3:19498150-19498169 None:intergenic 20.0%
!! AATAAACAAGAGAAAGAAAT+GGG + chr4_3:19498454-19498473 None:intergenic 20.0%
!! AAATAAACAAGAGAAAGAAA+TGG + chr4_3:19498455-19498474 None:intergenic 20.0%
!!! TTTCTTTCTCTTGTTTATTT+TGG - chr4_3:19498455-19498474 Msa0633720:intron 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_3:19498474-19498493 Msa0633720:intron 20.0%
!! TTAGTATAGAGTATATATGA+AGG - chr4_3:19498570-19498589 Msa0633720:CDS 20.0%
!!! TTTTATTACTGAAATTTGCA+GGG - chr4_3:19498609-19498628 Msa0633720:CDS 20.0%
!!! ATGTCACTTTATCAATTATT+TGG - chr4_3:19498747-19498766 Msa0633720:intron 20.0%
!!! TGTCACTTTATCAATTATTT+GGG - chr4_3:19498748-19498767 Msa0633720:intron 20.0%
!!! TTACCATTGAGTTTTATTTT+AGG - chr4_3:19498774-19498793 Msa0633720:intron 20.0%
!! AAACCTAAAATAAAACTCAA+TGG + chr4_3:19498780-19498799 None:intergenic 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_3:19499530-19499549 None:intergenic 20.0%
!!! CTATAATTGTTTTGAATGAT+TGG - chr4_3:19499939-19499958 Msa0633720:five_prime_UTR 20.0%
!! TTGATTATCAAGATTGTATA+GGG + chr4_3:19498149-19498168 None:intergenic 20.0%
!! TTTGATTATCAAGATTGTAT+AGG + chr4_3:19498150-19498169 None:intergenic 20.0%
!! AATAAACAAGAGAAAGAAAT+GGG + chr4_3:19498454-19498473 None:intergenic 20.0%
!! AAATAAACAAGAGAAAGAAA+TGG + chr4_3:19498455-19498474 None:intergenic 20.0%
!!! TTTCTTTCTCTTGTTTATTT+TGG - chr4_3:19498455-19498474 Msa0633720:intron 20.0%
!! TTGGTTTAATTATGATTATG+TGG - chr4_3:19498474-19498493 Msa0633720:intron 20.0%
!! TTAGTATAGAGTATATATGA+AGG - chr4_3:19498570-19498589 Msa0633720:CDS 20.0%
!!! TTTTATTACTGAAATTTGCA+GGG - chr4_3:19498609-19498628 Msa0633720:CDS 20.0%
!!! ATGTCACTTTATCAATTATT+TGG - chr4_3:19498747-19498766 Msa0633720:intron 20.0%
!!! TGTCACTTTATCAATTATTT+GGG - chr4_3:19498748-19498767 Msa0633720:intron 20.0%
!!! TTACCATTGAGTTTTATTTT+AGG - chr4_3:19498774-19498793 Msa0633720:intron 20.0%
!! AAACCTAAAATAAAACTCAA+TGG + chr4_3:19498780-19498799 None:intergenic 20.0%
!! ATTATACTTAAATCCACATT+GGG + chr4_3:19499530-19499549 None:intergenic 20.0%
! TATGAAGGATATTCAAAGAT+AGG - chr4_3:19498585-19498604 Msa0633720:CDS 25.0%
!! CTTTTATTACTGAAATTTGC+AGG - chr4_3:19498608-19498627 Msa0633720:CDS 25.0%
!! ATTTGTTTCCTTGATTTTTG+CGG - chr4_3:19499119-19499138 Msa0633720:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_3:19499221-19499240 None:intergenic 25.0%
! TGTTATGTATTAATCAATGC+TGG - chr4_3:19499457-19499476 Msa0633720:intron 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_3:19499531-19499550 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_3:19499747-19499766 Msa0633720:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_3:19499785-19499804 None:intergenic 25.0%
!! AATCATATTTTCATCTCCAT+TGG - chr4_3:19499814-19499833 Msa0633720:five_prime_UTR 25.0%
! TATGAAGGATATTCAAAGAT+AGG - chr4_3:19498585-19498604 Msa0633720:CDS 25.0%
!! CTTTTATTACTGAAATTTGC+AGG - chr4_3:19498608-19498627 Msa0633720:CDS 25.0%
!! ATTTGTTTCCTTGATTTTTG+CGG - chr4_3:19499119-19499138 Msa0633720:intron 25.0%
! ACTAATGATTGAAAATCGTT+TGG + chr4_3:19499221-19499240 None:intergenic 25.0%
! TGTTATGTATTAATCAATGC+TGG - chr4_3:19499457-19499476 Msa0633720:intron 25.0%
! CATTATACTTAAATCCACAT+TGG + chr4_3:19499531-19499550 None:intergenic 25.0%
! TAAAGATAAGTAGCTAATAG+TGG - chr4_3:19499747-19499766 Msa0633720:CDS 25.0%
! ATTATACTACAATCAAACAC+TGG + chr4_3:19499785-19499804 None:intergenic 25.0%
!! AATCATATTTTCATCTCCAT+TGG - chr4_3:19499814-19499833 Msa0633720:five_prime_UTR 25.0%
ATCTTTCTTTCTTTCTCTGT+TGG - chr4_3:19498102-19498121 Msa0633720:three_prime_UTR 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_3:19498308-19498327 None:intergenic 30.0%
CAGTATGCTAAAACAAGAAA+TGG + chr4_3:19498808-19498827 None:intergenic 30.0%
TTTGAACGACATTCAAACAT+TGG + chr4_3:19498921-19498940 None:intergenic 30.0%
TATCTCAGCTGTAAAATTGT+TGG + chr4_3:19498997-19499016 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_3:19499171-19499190 Msa0633720:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_3:19499172-19499191 Msa0633720:intron 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_3:19499321-19499340 Msa0633720:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_3:19499328-19499347 Msa0633720:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_3:19499329-19499348 Msa0633720:intron 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_3:19499812-19499831 None:intergenic 30.0%
AGCTATTGTTGACAGTAATA+TGG + chr4_3:19499878-19499897 None:intergenic 30.0%
ATCTTTCTTTCTTTCTCTGT+TGG - chr4_3:19498102-19498121 Msa0633720:three_prime_UTR 30.0%
ATTAGATTTACGTGACTGAA+TGG + chr4_3:19498308-19498327 None:intergenic 30.0%
CAGTATGCTAAAACAAGAAA+TGG + chr4_3:19498808-19498827 None:intergenic 30.0%
TTTGAACGACATTCAAACAT+TGG + chr4_3:19498921-19498940 None:intergenic 30.0%
TATCTCAGCTGTAAAATTGT+TGG + chr4_3:19498997-19499016 None:intergenic 30.0%
!! TGACATGGGTTTTATACTTA+TGG - chr4_3:19499171-19499190 Msa0633720:intron 30.0%
!! GACATGGGTTTTATACTTAT+GGG - chr4_3:19499172-19499191 Msa0633720:intron 30.0%
! TTTGCAGATTTTCAGTTCAA+AGG - chr4_3:19499321-19499340 Msa0633720:intron 30.0%
! ATTTTCAGTTCAAAGGAAGA+AGG - chr4_3:19499328-19499347 Msa0633720:intron 30.0%
! TTTTCAGTTCAAAGGAAGAA+GGG - chr4_3:19499329-19499348 Msa0633720:intron 30.0%
GGAGATGAAAATATGATTAC+AGG + chr4_3:19499812-19499831 None:intergenic 30.0%
AGCTATTGTTGACAGTAATA+TGG + chr4_3:19499878-19499897 None:intergenic 30.0%
GCAAAAACGTTGTCATTGTT+GGG + chr4_3:19498216-19498235 None:intergenic 35.0%
AGCAAAAACGTTGTCATTGT+TGG + chr4_3:19498217-19498236 None:intergenic 35.0%
! AAAGAAGCATAAGAAGGTGA+TGG + chr4_3:19498244-19498263 None:intergenic 35.0%
! CTCAGAAAAGAAGCATAAGA+AGG + chr4_3:19498250-19498269 None:intergenic 35.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_3:19498348-19498367 Msa0633720:CDS 35.0%
TTCAGGTGAAGAATTCTTTG+AGG + chr4_3:19498386-19498405 None:intergenic 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_3:19498403-19498422 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_3:19498403-19498422 Msa0633720:intron 35.0%
! TGGGTTGCTTCTTATTTATG+TGG - chr4_3:19498547-19498566 Msa0633720:CDS 35.0%
TTACTGAAATTTGCAGGGAA+AGG - chr4_3:19498614-19498633 Msa0633720:CDS 35.0%
! CTTTTGTTCCCCTAAAATCA+GGG + chr4_3:19498838-19498857 None:intergenic 35.0%
! TCTTTTGTTCCCCTAAAATC+AGG + chr4_3:19498839-19498858 None:intergenic 35.0%
CAGTACAGAACATTTCTTGA+AGG + chr4_3:19498883-19498902 None:intergenic 35.0%
GCTGTAAAATTGTTGGAACT+TGG + chr4_3:19498990-19499009 None:intergenic 35.0%
!! TTTGCGGACTATCGTTTTAA+TGG - chr4_3:19499135-19499154 Msa0633720:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_3:19499157-19499176 Msa0633720:intron 35.0%
TTTACAAACAACGAAAAGCG+CGG + chr4_3:19499285-19499304 None:intergenic 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_3:19499330-19499349 Msa0633720:intron 35.0%
AGAGATCAATGACAGAGTAA+TGG + chr4_3:19499428-19499447 None:intergenic 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_3:19499486-19499505 Msa0633720:intron 35.0%
CATTATGTCTGTATATCTGC+AGG - chr4_3:19499579-19499598 Msa0633720:CDS 35.0%
AAACAATATTCCTCTGCCAA+TGG + chr4_3:19499833-19499852 None:intergenic 35.0%
GCAAAAACGTTGTCATTGTT+GGG + chr4_3:19498216-19498235 None:intergenic 35.0%
AGCAAAAACGTTGTCATTGT+TGG + chr4_3:19498217-19498236 None:intergenic 35.0%
! AAAGAAGCATAAGAAGGTGA+TGG + chr4_3:19498244-19498263 None:intergenic 35.0%
! CTCAGAAAAGAAGCATAAGA+AGG + chr4_3:19498250-19498269 None:intergenic 35.0%
AGCTGTTAAAGAGAAAACTG+AGG - chr4_3:19498348-19498367 Msa0633720:CDS 35.0%
TTCAGGTGAAGAATTCTTTG+AGG + chr4_3:19498386-19498405 None:intergenic 35.0%
TACTTCTTGGTTACTTCTTC+AGG + chr4_3:19498403-19498422 None:intergenic 35.0%
GAAGAAGTAACCAAGAAGTA+TGG - chr4_3:19498403-19498422 Msa0633720:intron 35.0%
! TGGGTTGCTTCTTATTTATG+TGG - chr4_3:19498547-19498566 Msa0633720:CDS 35.0%
TTACTGAAATTTGCAGGGAA+AGG - chr4_3:19498614-19498633 Msa0633720:CDS 35.0%
! CTTTTGTTCCCCTAAAATCA+GGG + chr4_3:19498838-19498857 None:intergenic 35.0%
! TCTTTTGTTCCCCTAAAATC+AGG + chr4_3:19498839-19498858 None:intergenic 35.0%
CAGTACAGAACATTTCTTGA+AGG + chr4_3:19498883-19498902 None:intergenic 35.0%
GCTGTAAAATTGTTGGAACT+TGG + chr4_3:19498990-19499009 None:intergenic 35.0%
!! TTTGCGGACTATCGTTTTAA+TGG - chr4_3:19499135-19499154 Msa0633720:intron 35.0%
GAGAGGATGAATAATGACAT+GGG - chr4_3:19499157-19499176 Msa0633720:intron 35.0%
TTTACAAACAACGAAAAGCG+CGG + chr4_3:19499285-19499304 None:intergenic 35.0%
TTTCAGTTCAAAGGAAGAAG+GGG - chr4_3:19499330-19499349 Msa0633720:intron 35.0%
AGAGATCAATGACAGAGTAA+TGG + chr4_3:19499428-19499447 None:intergenic 35.0%
TGTTCAAACTTTGCTTCAGA+AGG - chr4_3:19499486-19499505 Msa0633720:intron 35.0%
CATTATGTCTGTATATCTGC+AGG - chr4_3:19499579-19499598 Msa0633720:CDS 35.0%
AAACAATATTCCTCTGCCAA+TGG + chr4_3:19499833-19499852 None:intergenic 35.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_3:19498416-19498435 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_3:19498415-19498434 Msa0633720:intron 40.0%
TGCTTGTCCATGTAGAACTT+AGG - chr4_3:19498687-19498706 Msa0633720:intron 40.0%
! TGCATCGTTCCCTGATTTTA+GGG - chr4_3:19498826-19498845 Msa0633720:intron 40.0%
GGGAACAAAAGATGTGTTGT+GGG - chr4_3:19498847-19498866 Msa0633720:intron 40.0%
AAATTGGCGACACAAGTCAT+CGG + chr4_3:19498947-19498966 None:intergenic 40.0%
ACGATAGTCCGCAAAAATCA+AGG + chr4_3:19499130-19499149 None:intergenic 40.0%
!! GGACTATCGTTTTAATGGAG+AGG - chr4_3:19499140-19499159 Msa0633720:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_3:19499156-19499175 Msa0633720:intron 40.0%
GGGGAACAACAGAAATCAAA+AGG - chr4_3:19499349-19499368 Msa0633720:intron 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_3:19499363-19499382 Msa0633720:intron 40.0%
! ATATTTTGCCAGCAACTCCT+TGG + chr4_3:19499383-19499402 None:intergenic 40.0%
AAGGAGTTGCTGGCAAAATA+TGG - chr4_3:19499382-19499401 Msa0633720:intron 40.0%
! CAATGACAGAGTAATGGAAG+TGG + chr4_3:19499422-19499441 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_3:19499514-19499533 Msa0633720:intron 40.0%
ATGTCTGTATATCTGCAGGT+CGG - chr4_3:19499583-19499602 Msa0633720:CDS 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_3:19499630-19499649 Msa0633720:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_3:19499665-19499684 Msa0633720:CDS 40.0%
! ATTTTCATCTCCATTGGCAG+AGG - chr4_3:19499820-19499839 Msa0633720:five_prime_UTR 40.0%
GAATATTGTTTCCACAGTCG+TGG - chr4_3:19499842-19499861 Msa0633720:five_prime_UTR 40.0%
AGCTTCAAGACCATACTTCT+TGG + chr4_3:19498416-19498435 None:intergenic 40.0%
! AAGAAGTATGGTCTTGAAGC+TGG - chr4_3:19498415-19498434 Msa0633720:intron 40.0%
TGCTTGTCCATGTAGAACTT+AGG - chr4_3:19498687-19498706 Msa0633720:intron 40.0%
! TGCATCGTTCCCTGATTTTA+GGG - chr4_3:19498826-19498845 Msa0633720:intron 40.0%
GGGAACAAAAGATGTGTTGT+GGG - chr4_3:19498847-19498866 Msa0633720:intron 40.0%
AAATTGGCGACACAAGTCAT+CGG + chr4_3:19498947-19498966 None:intergenic 40.0%
ACGATAGTCCGCAAAAATCA+AGG + chr4_3:19499130-19499149 None:intergenic 40.0%
!! GGACTATCGTTTTAATGGAG+AGG - chr4_3:19499140-19499159 Msa0633720:intron 40.0%
GGAGAGGATGAATAATGACA+TGG - chr4_3:19499156-19499175 Msa0633720:intron 40.0%
GGGGAACAACAGAAATCAAA+AGG - chr4_3:19499349-19499368 Msa0633720:intron 40.0%
ATCAAAAGGTGATCAAGCCA+AGG - chr4_3:19499363-19499382 Msa0633720:intron 40.0%
! ATATTTTGCCAGCAACTCCT+TGG + chr4_3:19499383-19499402 None:intergenic 40.0%
AAGGAGTTGCTGGCAAAATA+TGG - chr4_3:19499382-19499401 Msa0633720:intron 40.0%
! CAATGACAGAGTAATGGAAG+TGG + chr4_3:19499422-19499441 None:intergenic 40.0%
TGCTCATACATAACCCAATG+TGG - chr4_3:19499514-19499533 Msa0633720:intron 40.0%
ATGTCTGTATATCTGCAGGT+CGG - chr4_3:19499583-19499602 Msa0633720:CDS 40.0%
AAAAGTCGGTACCTTTGCTT+TGG - chr4_3:19499630-19499649 Msa0633720:CDS 40.0%
ACAAAGCTGCATCTCCAATT+AGG - chr4_3:19499665-19499684 Msa0633720:CDS 40.0%
! ATTTTCATCTCCATTGGCAG+AGG - chr4_3:19499820-19499839 Msa0633720:five_prime_UTR 40.0%
GAATATTGTTTCCACAGTCG+TGG - chr4_3:19499842-19499861 Msa0633720:five_prime_UTR 40.0%
CGTTGTCATTGTTGGGTACT+TGG + chr4_3:19498209-19498228 None:intergenic 45.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_3:19498422-19498441 Msa0633720:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_3:19498426-19498445 Msa0633720:intron 45.0%
GAGACAGCCTAAGTTCTACA+TGG + chr4_3:19498697-19498716 None:intergenic 45.0%
! CTGCATCGTTCCCTGATTTT+AGG - chr4_3:19498825-19498844 Msa0633720:intron 45.0%
! GCATCGTTCCCTGATTTTAG+GGG - chr4_3:19498827-19498846 Msa0633720:intron 45.0%
GGGGAACAAAAGATGTGTTG+TGG - chr4_3:19498846-19498865 Msa0633720:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_3:19499188-19499207 Msa0633720:intron 45.0%
! AAAGCGCGGCTTTGACTTTA+GGG + chr4_3:19499271-19499290 None:intergenic 45.0%
! AAAAGCGCGGCTTTGACTTT+AGG + chr4_3:19499272-19499291 None:intergenic 45.0%
GAGTTGCTGGCAAAATATGG+AGG - chr4_3:19499385-19499404 Msa0633720:intron 45.0%
GGAATCACTACTGATGCAAC+CGG - chr4_3:19499604-19499623 Msa0633720:CDS 45.0%
!!! AAAGGTACCGACTTTTTCGC+CGG + chr4_3:19499626-19499645 None:intergenic 45.0%
TGCAGCATATGCCAAAGCAA+AGG + chr4_3:19499644-19499663 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_3:19499682-19499701 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_3:19499697-19499716 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_3:19499713-19499732 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_3:19499714-19499733 None:intergenic 45.0%
GATTTACATGTCCACGACTG+TGG + chr4_3:19499856-19499875 None:intergenic 45.0%
CGTTGTCATTGTTGGGTACT+TGG + chr4_3:19498209-19498228 None:intergenic 45.0%
!! ATGGTCTTGAAGCTGGTCTT+TGG - chr4_3:19498422-19498441 Msa0633720:intron 45.0%
!! TCTTGAAGCTGGTCTTTGGA+AGG - chr4_3:19498426-19498445 Msa0633720:intron 45.0%
GAGACAGCCTAAGTTCTACA+TGG + chr4_3:19498697-19498716 None:intergenic 45.0%
! CTGCATCGTTCCCTGATTTT+AGG - chr4_3:19498825-19498844 Msa0633720:intron 45.0%
! GCATCGTTCCCTGATTTTAG+GGG - chr4_3:19498827-19498846 Msa0633720:intron 45.0%
GGGGAACAAAAGATGTGTTG+TGG - chr4_3:19498846-19498865 Msa0633720:intron 45.0%
!! TTATGGGAGTGTCATCGTGT+CGG - chr4_3:19499188-19499207 Msa0633720:intron 45.0%
! AAAGCGCGGCTTTGACTTTA+GGG + chr4_3:19499271-19499290 None:intergenic 45.0%
! AAAAGCGCGGCTTTGACTTT+AGG + chr4_3:19499272-19499291 None:intergenic 45.0%
GAGTTGCTGGCAAAATATGG+AGG - chr4_3:19499385-19499404 Msa0633720:intron 45.0%
GGAATCACTACTGATGCAAC+CGG - chr4_3:19499604-19499623 Msa0633720:CDS 45.0%
!!! AAAGGTACCGACTTTTTCGC+CGG + chr4_3:19499626-19499645 None:intergenic 45.0%
TGCAGCATATGCCAAAGCAA+AGG + chr4_3:19499644-19499663 None:intergenic 45.0%
ACTGTGGGTGGAAACCTAAT+TGG + chr4_3:19499682-19499701 None:intergenic 45.0%
ATTGGGGTAAGAGCTACTGT+GGG + chr4_3:19499697-19499716 None:intergenic 45.0%
AATCCAACCAGCTACGATTG+GGG + chr4_3:19499713-19499732 None:intergenic 45.0%
CAATCCAACCAGCTACGATT+GGG + chr4_3:19499714-19499733 None:intergenic 45.0%
GATTTACATGTCCACGACTG+TGG + chr4_3:19499856-19499875 None:intergenic 45.0%
TGATCAAGCCAAGGAGTTGC+TGG - chr4_3:19499372-19499391 Msa0633720:intron 50.0%
GATGCAACCGGCGAAAAAGT+CGG - chr4_3:19499616-19499635 Msa0633720:CDS 50.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_3:19499698-19499717 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_3:19499707-19499726 Msa0633720:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_3:19499715-19499734 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_3:19499712-19499731 Msa0633720:CDS 50.0%
TGATCAAGCCAAGGAGTTGC+TGG - chr4_3:19499372-19499391 Msa0633720:intron 50.0%
GATGCAACCGGCGAAAAAGT+CGG - chr4_3:19499616-19499635 Msa0633720:CDS 50.0%
GATTGGGGTAAGAGCTACTG+TGG + chr4_3:19499698-19499717 None:intergenic 50.0%
TTACCCCAATCGTAGCTGGT+TGG - chr4_3:19499707-19499726 Msa0633720:CDS 50.0%
CCAATCCAACCAGCTACGAT+TGG + chr4_3:19499715-19499734 None:intergenic 50.0%
CCAATCGTAGCTGGTTGGAT+TGG - chr4_3:19499712-19499731 Msa0633720:CDS 50.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_3:19499703-19499722 Msa0633720:CDS 55.0%
GCTCTTACCCCAATCGTAGC+TGG - chr4_3:19499703-19499722 Msa0633720:CDS 55.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_3:19499694-19499713 None:intergenic 60.0%
GGGGTAAGAGCTACTGTGGG+TGG + chr4_3:19499694-19499713 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 19498054 19499960 19498054 ID=Msa0633720;Name=Msa0633720
chr4_3 mRNA 19498054 19499960 19498054 ID=Msa0633720-mRNA-1;Parent=Msa0633720;Name=Msa0633720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=166|1|1|1|1|1|3|201|188
chr4_3 exon 19498054 19498413 19498054 ID=Msa0633720-mRNA-1:exon:5343;Parent=Msa0633720-mRNA-1
chr4_3 exon 19498507 19498686 19498507 ID=Msa0633720-mRNA-1:exon:5342;Parent=Msa0633720-mRNA-1
chr4_3 exon 19499567 19499960 19499567 ID=Msa0633720-mRNA-1:exon:5341;Parent=Msa0633720-mRNA-1
chr4_3 five_prime_UTR 19499795 19499960 19499795 ID=Msa0633720-mRNA-1:five_prime_utr;Parent=Msa0633720-mRNA-1
chr4_3 CDS 19499567 19499794 19499567 ID=Msa0633720-mRNA-1:cds;Parent=Msa0633720-mRNA-1
chr4_3 CDS 19498507 19498686 19498507 ID=Msa0633720-mRNA-1:cds;Parent=Msa0633720-mRNA-1
chr4_3 CDS 19498255 19498413 19498255 ID=Msa0633720-mRNA-1:cds;Parent=Msa0633720-mRNA-1
chr4_3 three_prime_UTR 19498054 19498254 19498054 ID=Msa0633720-mRNA-1:three_prime_utr;Parent=Msa0633720-mRNA-1
Gene Sequence

>Msa0633720

ATGACAACGTTTTTGCTGCTACCATCACCTTCTTATGCTTCTTTTCTGAGCAACAAGAAGAGTTCAAGATTATGCAGTCTTGCTTCCATTCAGTCACGTAAATCTAATGTTAAAGTGTTCAGAGTTAGAGCTGTTAAAGAGAAAACTGAGGAAATCAAAAGCTCCTCAAAGAATTCTTCACCTGAAGAAGTAACCAAGAAGTATGGTCTTGAAGCTGGTCTTTGGAAGATTTTCAGTTCAAAGGAAGAAGGGGAACAACAGAAATCAAAAGGTGATCAAGCCAAGGAGTTGCTGGCAAAATATGGAGGAGCATACTTAGCCACTTCCATTACTCTGTCATTGATCTCTTTCGCTCTTTGTTATGTATTAATCAATGCTGGAGTAGATGTTCAAACTTTGCTTCAGAAGGTCGGAATCACTACTGATGCAACCGGCGAAAAAGTCGGTACCTTTGCTTTGGCATATGCTGCACACAAAGCTGCATCTCCAATTAGGTTTCCACCCACAGTAGCTCTTACCCCAATCGTAGCTGGTTGGATTGGAAAGAAAGCTGATAAAGATAAGTAG

Protein sequence

>Msa0633720

MTTFLLLPSPSYASFLSNKKSSRLCSLASIQSRKSNVKVFRVRAVKEKTEEIKSSSKNSSPEEVTKKYGLEAGLWKIFSSKEEGEQQKSKGDQAKELLAKYGGAYLATSITLSLISFALCYVLINAGVDVQTLLQKVGITTDATGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWIGKKADKDK*