AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1194330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194330 MtrunA17_Chr8g0364551 91.908 173 12 2 1 172 1 172 5.56e-100 285
Msa1194330 MtrunA17_Chr8g0364581 50.000 118 56 1 51 165 60 177 5.31e-36 123
Msa1194330 MtrunA17_Chr2g0329721 97.619 42 1 0 131 172 1 42 3.95e-26 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1194330 AT1G10522.1 60.976 164 55 3 7 169 24 179 1.14e-66 201
Msa1194330 AT1G10522.2 60.976 164 55 3 7 169 24 179 1.14e-66 201

Find 47 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAACGAGAGACACTTTAT+TGG 0.303926 8_1:+41514217 None:intergenic
GAATCAGCAAATTGAGGAAT+TGG 0.320907 8_1:+41516759 None:intergenic
TTTGCATTTGGTAGTGGTTT+GGG 0.340802 8_1:+41516887 None:intergenic
ACATTCTTACATTCTGAGTA+TGG 0.355591 8_1:-41514399 Msa1194330:CDS
CTGCGCGTACTGCTATCAAT+TGG 0.368089 8_1:-41514293 Msa1194330:CDS
TGAGAAACGTTGTTTGCATT+TGG 0.378977 8_1:+41516875 None:intergenic
GTTTGCATTTGGTAGTGGTT+TGG 0.391225 8_1:+41516886 None:intergenic
GAATCAGTTGAAGAAGTTGT+TGG 0.395209 8_1:-41516595 Msa1194330:CDS
GTGACCTTTCTGTTTATTGA+AGG 0.403119 8_1:+41516849 None:intergenic
GAAGAAGAAGGAATGAGAAA+TGG 0.412245 8_1:+41516933 None:intergenic
CGCGCAGCTTGCGGTCCTCC+AGG 0.421440 8_1:+41514309 None:intergenic
AACTCTTTGGAGTTAGCTAT+AGG 0.437242 8_1:-41517009 Msa1194330:five_prime_UTR
GAAGAATGGCTTCATCTACT+TGG 0.441198 8_1:-41516965 Msa1194330:exon
GCAAATTGAGGAATTGGGTC+AGG 0.441374 8_1:+41516765 None:intergenic
AACATAGTGCTCGAAGCATT+TGG 0.442267 8_1:-41514032 Msa1194330:three_prime_UTR
TGGAGGTCCTGGCACACTCT+TGG 0.449320 8_1:-41514379 Msa1194330:CDS
GCACTGCAAACTTTGAAGAA+TGG 0.454550 8_1:-41516979 Msa1194330:exon
GGTTGATCCTTTCGTTGACA+TGG 0.470818 8_1:-41514358 Msa1194330:CDS
CATTCTGAGTATGGAGGTCC+TGG 0.481112 8_1:-41514390 Msa1194330:CDS
GGATCAACCAAGAGTGTGCC+AGG 0.491950 8_1:+41514372 None:intergenic
CCTACGATCATTCTAAACTA+AGG 0.494622 8_1:+41514100 None:intergenic
ACGTTGTTTGCATTTGGTAG+TGG 0.495989 8_1:+41516881 None:intergenic
AATCAGCAAATTGAGGAATT+GGG 0.496618 8_1:+41516760 None:intergenic
TGCGCGTACTGCTATCAATT+GGG 0.497209 8_1:-41514292 Msa1194330:CDS
CATTCCAGTCCTTGTCAACA+TGG 0.498066 8_1:+41514262 None:intergenic
GAAGGAATTGAAGAAGAAGA+AGG 0.506922 8_1:+41516921 None:intergenic
AAGCCCATGTTGACAAGGAC+TGG 0.508359 8_1:-41514266 Msa1194330:CDS
ATTTCCTTCAATAAACAGAA+AGG 0.515763 8_1:-41516853 Msa1194330:CDS
CTCAGCAGCAGCTCTAGTAA+TGG 0.525497 8_1:+41516797 None:intergenic
GCTGATATTGTAAACGAAAG+AGG 0.526912 8_1:-41514336 Msa1194330:CDS
TTGAAAGCTTATTGAGAAGG+TGG 0.544406 8_1:+41516635 None:intergenic
CTTACGGAATCAGCAAATTG+AGG 0.550268 8_1:+41516753 None:intergenic
TTGACAAGGACTGGAATGAA+TGG 0.551690 8_1:-41514257 Msa1194330:CDS
TCTTTGAAAGCTTATTGAGA+AGG 0.554547 8_1:+41516632 None:intergenic
GTAAACGAAAGAGGATTGCC+TGG 0.563165 8_1:-41514327 Msa1194330:CDS
ATTCCAGTCCTTGTCAACAT+GGG 0.576970 8_1:+41514263 None:intergenic
GGCACAAGCCCATGTTGACA+AGG 0.594589 8_1:-41514271 Msa1194330:CDS
ATAGCAGTACGCGCAGCTTG+CGG 0.618963 8_1:+41514300 None:intergenic
CAAATTGAGGAATTGGGTCA+GGG 0.622665 8_1:+41516766 None:intergenic
ATATCAGCCATGTCAACGAA+AGG 0.624747 8_1:+41514351 None:intergenic
CCTTAGTTTAGAATGATCGT+AGG 0.641280 8_1:-41514100 Msa1194330:three_prime_UTR
GACTGGAATGAATGGACAGG+TGG 0.643824 8_1:-41514249 Msa1194330:CDS
TTCTTACATTCTGAGTATGG+AGG 0.645387 8_1:-41514396 Msa1194330:CDS
AAGGACTGGAATGAATGGAC+AGG 0.650369 8_1:-41514252 Msa1194330:CDS
GTTTGGGAGAAGCATAGCGA+AGG 0.664504 8_1:+41516903 None:intergenic
AACGAAAGAGGATTGCCTGG+AGG 0.721934 8_1:-41514324 Msa1194330:CDS
AGTTGTTGGAGTTTGCACTG+AGG 0.736052 8_1:-41516581 Msa1194330:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAAAAAATAAAAAGT+GGG + chr8_1:41514332-41514351 None:intergenic 10.0%
!!! TATTTTCAAAAAATAAAAAG+TGG + chr8_1:41514333-41514352 None:intergenic 10.0%
!!! CTATAATTTAAAATTAGTTT+TGG - chr8_1:41515416-41515435 Msa1194330:intron 10.0%
!!! ATAAATAATCTTTTTGTTTG+TGG - chr8_1:41514350-41514369 Msa1194330:CDS 15.0%
!!! TAAATAATCTTTTTGTTTGT+GGG - chr8_1:41514351-41514370 Msa1194330:CDS 15.0%
!!! TATATAAGTATATTTTCGTA+AGG + chr8_1:41514634-41514653 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+TGG + chr8_1:41515147-41515166 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr8_1:41515055-41515074 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - chr8_1:41514955-41514974 Msa1194330:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr8_1:41515146-41515165 Msa1194330:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr8_1:41515147-41515166 Msa1194330:intron 15.0%
!! AAAATCATAAACATAAATGA+AGG + chr8_1:41515811-41515830 None:intergenic 15.0%
!!! TTTTTTATAAAGCAACTCTT+TGG - chr8_1:41514013-41514032 Msa1194330:three_prime_UTR 20.0%
!! AAAAAAAGAGAGAAAACTTA+CGG + chr8_1:41514301-41514320 None:intergenic 20.0%
!! ATTACTAAACAAAAGAAAGA+GGG + chr8_1:41514536-41514555 None:intergenic 20.0%
!! AATTACTAAACAAAAGAAAG+AGG + chr8_1:41514537-41514556 None:intergenic 20.0%
!!! ATGTATTTTGTTTGTCATTT+TGG - chr8_1:41514653-41514672 Msa1194330:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - chr8_1:41514990-41515009 Msa1194330:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr8_1:41515084-41515103 Msa1194330:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr8_1:41515085-41515104 Msa1194330:intron 20.0%
!!! TTTGGAATCTCAATATATTT+AGG - chr8_1:41515336-41515355 Msa1194330:intron 20.0%
!! TTGGAATCTCAATATATTTA+GGG - chr8_1:41515337-41515356 Msa1194330:intron 20.0%
!! TTCTTTCAATCAACTAATTA+AGG - chr8_1:41515981-41516000 Msa1194330:intron 20.0%
! ATTTCCTTCAATAAACAGAA+AGG - chr8_1:41514182-41514201 Msa1194330:three_prime_UTR 25.0%
!!! TTTTGTTTGTCATTTTGGTT+AGG - chr8_1:41514658-41514677 Msa1194330:intron 25.0%
!!! TTTGTTTGTCATTTTGGTTA+GGG - chr8_1:41514659-41514678 Msa1194330:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr8_1:41514795-41514814 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr8_1:41514796-41514815 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG - chr8_1:41515118-41515137 Msa1194330:intron 25.0%
!! AGAAACATAATTAACCCTTT+TGG - chr8_1:41515204-41515223 Msa1194330:intron 25.0%
! CATGTATTAGCAAAATCTAT+AGG - chr8_1:41515899-41515918 Msa1194330:intron 25.0%
!! TAGTACACCTAAACTATTTT+TGG - chr8_1:41516525-41516544 Msa1194330:intron 25.0%
AATCAGCAAATTGAGGAATT+GGG + chr8_1:41514278-41514297 None:intergenic 30.0%
! TCTTTGAAAGCTTATTGAGA+AGG + chr8_1:41514406-41514425 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr8_1:41515177-41515196 None:intergenic 30.0%
! AAGTATGGACTAAACTTACA+AGG + chr8_1:41514718-41514737 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr8_1:41514858-41514877 Msa1194330:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG - chr8_1:41515117-41515136 Msa1194330:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr8_1:41515177-41515196 Msa1194330:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr8_1:41515178-41515197 Msa1194330:intron 30.0%
TCATGCATTAAACTGACTAA+GGG + chr8_1:41515285-41515304 None:intergenic 30.0%
TTCATGCATTAAACTGACTA+AGG + chr8_1:41515286-41515305 None:intergenic 30.0%
TATAGAGTAAACAGTTACCA+TGG + chr8_1:41515401-41515420 None:intergenic 30.0%
GGAAAGATGTCATATTTGAA+GGG - chr8_1:41515438-41515457 Msa1194330:intron 30.0%
GAAAGATGTCATATTTGAAG+GGG - chr8_1:41515439-41515458 Msa1194330:intron 30.0%
ATACTTCAGTGACTTAGAAA+TGG + chr8_1:41515608-41515627 None:intergenic 30.0%
! TGAAGTATTTCCCTATTTGA+AGG - chr8_1:41515620-41515639 Msa1194330:intron 30.0%
! GAAGTATTTCCCTATTTGAA+GGG - chr8_1:41515621-41515640 Msa1194330:intron 30.0%
TGTTCATCAAAGTCATAGAA+AGG + chr8_1:41515650-41515669 None:intergenic 30.0%
TCTATGACTTTGATGAACAT+AGG - chr8_1:41515651-41515670 Msa1194330:intron 30.0%
CTATGACTTTGATGAACATA+GGG - chr8_1:41515652-41515671 Msa1194330:intron 30.0%
ATGAAGGATCATTCACATAA+CGG + chr8_1:41515795-41515814 None:intergenic 30.0%
TTTCCAAATAGCAGTTATAG+TGG - chr8_1:41516158-41516177 Msa1194330:intron 30.0%
TTGCAAAATTTGATCAACCA+GGG - chr8_1:41516199-41516218 Msa1194330:intron 30.0%
TGAAGCTCCAAAAATAGTTT+AGG + chr8_1:41516535-41516554 None:intergenic 30.0%
ACATTCTTACATTCTGAGTA+TGG - chr8_1:41516636-41516655 Msa1194330:CDS 30.0%
!! AACTCTTTGGAGTTAGCTAT+AGG - chr8_1:41514026-41514045 Msa1194330:three_prime_UTR 35.0%
GAAGAAGAAGGAATGAGAAA+TGG + chr8_1:41514105-41514124 None:intergenic 35.0%
GAAGGAATTGAAGAAGAAGA+AGG + chr8_1:41514117-41514136 None:intergenic 35.0%
!! TTTGCATTTGGTAGTGGTTT+GGG + chr8_1:41514151-41514170 None:intergenic 35.0%
TGAGAAACGTTGTTTGCATT+TGG + chr8_1:41514163-41514182 None:intergenic 35.0%
GTGACCTTTCTGTTTATTGA+AGG + chr8_1:41514189-41514208 None:intergenic 35.0%
GAATCAGCAAATTGAGGAAT+TGG + chr8_1:41514279-41514298 None:intergenic 35.0%
!! TCTTTTTGTTTGTGGGTTTC+AGG - chr8_1:41514358-41514377 Msa1194330:CDS 35.0%
TTGAAAGCTTATTGAGAAGG+TGG + chr8_1:41514403-41514422 None:intergenic 35.0%
GAATCAGTTGAAGAAGTTGT+TGG - chr8_1:41514440-41514459 Msa1194330:intron 35.0%
!! TTATGAGTAGCCTGTCATTT+TGG - chr8_1:41514607-41514626 Msa1194330:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr8_1:41515162-41515181 Msa1194330:intron 35.0%
TACACTCACGATAACCAAAA+GGG + chr8_1:41515221-41515240 None:intergenic 35.0%
! AAACACTCTTGCAGAGTTTT+TGG - chr8_1:41515318-41515337 Msa1194330:intron 35.0%
GGGAAAGATGTCATATTTGA+AGG - chr8_1:41515437-41515456 Msa1194330:intron 35.0%
TCATATTTGAAGGGGATACA+GGG - chr8_1:41515447-41515466 Msa1194330:intron 35.0%
TCATCAAAGTCATAGAAAGG+AGG + chr8_1:41515647-41515666 None:intergenic 35.0%
GAAACAAAAGTGATCTGTTC+AGG + chr8_1:41516053-41516072 None:intergenic 35.0%
TGTTTCGTGATCCACTATTT+AGG - chr8_1:41516067-41516086 Msa1194330:intron 35.0%
CAACACTTTGTCCTAAATAG+TGG + chr8_1:41516081-41516100 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+TGG - chr8_1:41516098-41516117 Msa1194330:intron 35.0%
GTTGCAAAATTTGATCAACC+AGG - chr8_1:41516198-41516217 Msa1194330:intron 35.0%
TTCTTACATTCTGAGTATGG+AGG - chr8_1:41516639-41516658 Msa1194330:CDS 35.0%
GCTGATATTGTAAACGAAAG+AGG - chr8_1:41516699-41516718 Msa1194330:intron 35.0%
TACAACGAGAGACACTTTAT+TGG + chr8_1:41516821-41516840 None:intergenic 35.0%
CCTACGATCATTCTAAACTA+AGG + chr8_1:41516938-41516957 None:intergenic 35.0%
! CCTTAGTTTAGAATGATCGT+AGG - chr8_1:41516935-41516954 Msa1194330:CDS 35.0%
! GCACTGCAAACTTTGAAGAA+TGG - chr8_1:41514056-41514075 Msa1194330:three_prime_UTR 40.0%
GAAGAATGGCTTCATCTACT+TGG - chr8_1:41514070-41514089 Msa1194330:three_prime_UTR 40.0%
!! GTTTGCATTTGGTAGTGGTT+TGG + chr8_1:41514152-41514171 None:intergenic 40.0%
ACGTTGTTTGCATTTGGTAG+TGG + chr8_1:41514157-41514176 None:intergenic 40.0%
! GAGCGTTTTGTGGATGAAAA+GGG + chr8_1:41514219-41514238 None:intergenic 40.0%
!! TCTAGTAATGGAGCGTTTTG+TGG + chr8_1:41514229-41514248 None:intergenic 40.0%
CAAATTGAGGAATTGGGTCA+GGG + chr8_1:41514272-41514291 None:intergenic 40.0%
CTTACGGAATCAGCAAATTG+AGG + chr8_1:41514285-41514304 None:intergenic 40.0%
TTCGTAAGGACCAAAATGAC+AGG + chr8_1:41514620-41514639 None:intergenic 40.0%
GTACACTCACGATAACCAAA+AGG + chr8_1:41515222-41515241 None:intergenic 40.0%
TGGTTCCTAAATGTGTGACA+CGG + chr8_1:41515381-41515400 None:intergenic 40.0%
TGTCACACATTTAGGAACCA+TGG - chr8_1:41515381-41515400 Msa1194330:intron 40.0%
GTCATATTTGAAGGGGATAC+AGG - chr8_1:41515446-41515465 Msa1194330:intron 40.0%
!! TGACTTAGAAATGGTGCCAT+TGG + chr8_1:41515599-41515618 None:intergenic 40.0%
AGTTGAACACATCCAAAGCA+GGG + chr8_1:41515765-41515784 None:intergenic 40.0%
AAGTTGAACACATCCAAAGC+AGG + chr8_1:41515766-41515785 None:intergenic 40.0%
GCACCACTATAACTGCTATT+TGG + chr8_1:41516164-41516183 None:intergenic 40.0%
ATGACAACATGTGGACATAG+CGG + chr8_1:41516291-41516310 None:intergenic 40.0%
CTACTCTACATGACAACATG+TGG + chr8_1:41516300-41516319 None:intergenic 40.0%
GTCATGTAGAGTAGAGTCTA+TGG - chr8_1:41516306-41516325 Msa1194330:intron 40.0%
ATGTAGAGTAGAGTCTATGG+TGG - chr8_1:41516309-41516328 Msa1194330:intron 40.0%
GTTATAGAACTGTAGCGTAG+CGG - chr8_1:41516333-41516352 Msa1194330:intron 40.0%
!! AAACCAAAGGTAGTGGAGAA+AGG + chr8_1:41516457-41516476 None:intergenic 40.0%
TGCATGAAAACCAAAGGTAG+TGG + chr8_1:41516464-41516483 None:intergenic 40.0%
AGTCGTTGCATGAAAACCAA+AGG + chr8_1:41516470-41516489 None:intergenic 40.0%
! CATACTTACCTTGTTTCCTG+CGG - chr8_1:41516576-41516595 Msa1194330:intron 40.0%
ATATCAGCCATGTCAACGAA+AGG + chr8_1:41516687-41516706 None:intergenic 40.0%
ATTCCAGTCCTTGTCAACAT+GGG + chr8_1:41516775-41516794 None:intergenic 40.0%
TTGACAAGGACTGGAATGAA+TGG - chr8_1:41516778-41516797 Msa1194330:CDS 40.0%
! AACATAGTGCTCGAAGCATT+TGG - chr8_1:41517003-41517022 Msa1194330:five_prime_UTR 40.0%
!! GGAGCGTTTTGTGGATGAAA+AGG + chr8_1:41514220-41514239 None:intergenic 45.0%
GCAAATTGAGGAATTGGGTC+AGG + chr8_1:41514273-41514292 None:intergenic 45.0%
TGTTTGTGGGTTTCAGGAGA+CGG - chr8_1:41514364-41514383 Msa1194330:CDS 45.0%
AGTTGTTGGAGTTTGCACTG+AGG - chr8_1:41514454-41514473 Msa1194330:intron 45.0%
TGACACCGTGTCACACATTT+AGG - chr8_1:41515373-41515392 Msa1194330:intron 45.0%
!! TTCCACTTTGGTGCCATCAA+TGG - chr8_1:41515470-41515489 Msa1194330:intron 45.0%
!! ATGGAATTGGATGGTGCCAT+TGG + chr8_1:41515498-41515517 None:intergenic 45.0%
GAAAGGAGGCCCTTCAAATA+GGG + chr8_1:41515633-41515652 None:intergenic 45.0%
AGAAAGGAGGCCCTTCAAAT+AGG + chr8_1:41515634-41515653 None:intergenic 45.0%
CGCAGGAAACAAGGTAAGTA+TGG + chr8_1:41516578-41516597 None:intergenic 45.0%
ATCATAGTCACAGAATCCGC+AGG + chr8_1:41516595-41516614 None:intergenic 45.0%
GGTTGATCCTTTCGTTGACA+TGG - chr8_1:41516677-41516696 Msa1194330:intron 45.0%
GTAAACGAAAGAGGATTGCC+TGG - chr8_1:41516708-41516727 Msa1194330:intron 45.0%
TGCGCGTACTGCTATCAATT+GGG - chr8_1:41516743-41516762 Msa1194330:intron 45.0%
CATTCCAGTCCTTGTCAACA+TGG + chr8_1:41516776-41516795 None:intergenic 45.0%
AAGGACTGGAATGAATGGAC+AGG - chr8_1:41516783-41516802 Msa1194330:CDS 45.0%
!!! TAAGTAATTTTTTTTTTATA+GGG + chr8_1:41514762-41514781 None:intergenic 5.0%
!!! ATAAGTAATTTTTTTTTTAT+AGG + chr8_1:41514763-41514782 None:intergenic 5.0%
!!! TATAATTTAAAATTAGTTTT+GGG - chr8_1:41515417-41515436 Msa1194330:intron 5.0%
! GTTTGGGAGAAGCATAGCGA+AGG + chr8_1:41514135-41514154 None:intergenic 50.0%
! CTCAGCAGCAGCTCTAGTAA+TGG + chr8_1:41514241-41514260 None:intergenic 50.0%
GTTGGAGTTTGCACTGAGGT+CGG - chr8_1:41514458-41514477 Msa1194330:intron 50.0%
! TGCCATTGATGGCACCAAAG+TGG + chr8_1:41515475-41515494 None:intergenic 50.0%
! GTGGTGGAGATGGAATTGGA+TGG + chr8_1:41515507-41515526 None:intergenic 50.0%
! GTGTGTGGTGGAGATGGAAT+TGG + chr8_1:41515511-41515530 None:intergenic 50.0%
! ATGTGTGTGTGTGGTGGAGA+TGG + chr8_1:41515517-41515536 None:intergenic 50.0%
TGTGTGATGTGTGTGTGTGG+TGG + chr8_1:41515523-41515542 None:intergenic 50.0%
GTGTGTGTGATGTGTGTGTG+TGG + chr8_1:41515526-41515545 None:intergenic 50.0%
GATCTCTGCTATGGCACCAA+TGG - chr8_1:41515580-41515599 Msa1194330:intron 50.0%
CATTCCTTGTCACCCTGCTT+TGG - chr8_1:41515750-41515769 Msa1194330:intron 50.0%
ACATCCAAAGCAGGGTGACA+AGG + chr8_1:41515757-41515776 None:intergenic 50.0%
CAGCAGCTATTTGACATCCC+TGG + chr8_1:41516219-41516238 None:intergenic 50.0%
GTGTTGTCAATCGCAGATCG+CGG + chr8_1:41516381-41516400 None:intergenic 50.0%
CAGCCTTTCTCCACTACCTT+TGG - chr8_1:41516451-41516470 Msa1194330:intron 50.0%
CACAGAATCCGCAGGAAACA+AGG + chr8_1:41516587-41516606 None:intergenic 50.0%
CATTCTGAGTATGGAGGTCC+TGG - chr8_1:41516645-41516664 Msa1194330:CDS 50.0%
AACGAAAGAGGATTGCCTGG+AGG - chr8_1:41516711-41516730 Msa1194330:intron 50.0%
CTGCGCGTACTGCTATCAAT+TGG - chr8_1:41516742-41516761 Msa1194330:intron 50.0%
AAGCCCATGTTGACAAGGAC+TGG - chr8_1:41516769-41516788 Msa1194330:CDS 50.0%
GACTGGAATGAATGGACAGG+TGG - chr8_1:41516786-41516805 Msa1194330:CDS 50.0%
GGGGATACAGGGTTCCACTT+TGG - chr8_1:41515458-41515477 Msa1194330:intron 55.0%
! GGTGCCATCAATGGCACCAA+TGG - chr8_1:41515479-41515498 Msa1194330:intron 55.0%
!! GGTGCCATTGGTGCCATTGA+TGG + chr8_1:41515486-41515505 None:intergenic 55.0%
ATCACACACACATCCCCACG+CGG - chr8_1:41515535-41515554 Msa1194330:intron 55.0%
TCCTGGCCGTTGATGTGTGT+GGG + chr8_1:41515562-41515581 None:intergenic 55.0%
ATCCTGGCCGTTGATGTGTG+TGG + chr8_1:41515563-41515582 None:intergenic 55.0%
AACGGCCAGGATCTCTGCTA+TGG - chr8_1:41515571-41515590 Msa1194330:intron 55.0%
!! TGGTGCCATAGCAGAGATCC+TGG + chr8_1:41515579-41515598 None:intergenic 55.0%
AGCGGATCGCGGAACAATAG+TGG + chr8_1:41516273-41516292 None:intergenic 55.0%
!! CATGTGGACATAGCGGATCG+CGG + chr8_1:41516284-41516303 None:intergenic 55.0%
TCGCAGATCGCGGAAGATAG+CGG + chr8_1:41516371-41516390 None:intergenic 55.0%
GGAGAAAGGCTGCGTCTAGA+TGG + chr8_1:41516443-41516462 None:intergenic 55.0%
! GGATCAACCAAGAGTGTGCC+AGG + chr8_1:41516666-41516685 None:intergenic 55.0%
ATAGCAGTACGCGCAGCTTG+CGG + chr8_1:41516738-41516757 None:intergenic 55.0%
GGCACAAGCCCATGTTGACA+AGG - chr8_1:41516764-41516783 Msa1194330:CDS 55.0%
TGATGTGTGTGGGTCCGCGT+GGG + chr8_1:41515552-41515571 None:intergenic 60.0%
TTGATGTGTGTGGGTCCGCG+TGG + chr8_1:41515553-41515572 None:intergenic 60.0%
CGCGGACCCACACACATCAA+CGG - chr8_1:41515553-41515572 Msa1194330:intron 60.0%
ACCCACACACATCAACGGCC+AGG - chr8_1:41515558-41515577 Msa1194330:intron 60.0%
TGGAGGTCCTGGCACACTCT+TGG - chr8_1:41516656-41516675 Msa1194330:CDS 60.0%
GATGTGTGTGGGTCCGCGTG+GGG + chr8_1:41515551-41515570 None:intergenic 65.0%
CGCGCAGCTTGCGGTCCTCC+AGG + chr8_1:41516729-41516748 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 41514000 41517057 41514000 ID=Msa1194330;Name=Msa1194330
chr8_1 mRNA 41514000 41517057 41514000 ID=Msa1194330-mRNA-1;Parent=Msa1194330;Name=Msa1194330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=75|1|1|1|1|1|3|233|172
chr8_1 exon 41514000 41514430 41514000 ID=Msa1194330-mRNA-1:exon:13417;Parent=Msa1194330-mRNA-1
chr8_1 exon 41516582 41516677 41516582 ID=Msa1194330-mRNA-1:exon:13416;Parent=Msa1194330-mRNA-1
chr8_1 exon 41516758 41517057 41516758 ID=Msa1194330-mRNA-1:exon:13415;Parent=Msa1194330-mRNA-1
chr8_1 five_prime_UTR 41516983 41517057 41516983 ID=Msa1194330-mRNA-1:five_prime_utr;Parent=Msa1194330-mRNA-1
chr8_1 CDS 41516758 41516982 41516758 ID=Msa1194330-mRNA-1:cds;Parent=Msa1194330-mRNA-1
chr8_1 CDS 41516582 41516677 41516582 ID=Msa1194330-mRNA-1:cds;Parent=Msa1194330-mRNA-1
chr8_1 CDS 41514233 41514430 41514233 ID=Msa1194330-mRNA-1:cds;Parent=Msa1194330-mRNA-1
chr8_1 three_prime_UTR 41514000 41514232 41514000 ID=Msa1194330-mRNA-1:three_prime_utr;Parent=Msa1194330-mRNA-1
Gene Sequence

>Msa1194330

ATGGCTTCATCTACTTGGTGTCTTGTACCATTTCTCATTCCTTCTTCTTCTTCAATTCCTTCGCTATGCTTCTCCCAAACCACTACCAAATGCAAACAACGTTTCTCATTTCCTTCAATAAACAGAAAGGTCACAACTTTACCCTTTTCATCCACAAAACGCTCCATTACTAGAGCTGCTGCTGAGTACAAATTCCCTGACCCAATTCCTCAATTTGCTGATTCCGAGACGGAAAAATTTCAAAACCACCTTCTCAATAAGCTTTCAAAGAAAGATATCTTTGAAGAATCAGTTGAAGAAGTTGTTGGAGTTTGCACTGAGATTTTCAGCACATTCTTACATTCTGAGTATGGAGGTCCTGGCACACTCTTGGTTGATCCTTTCGTTGACATGGCTGATATTGTAAACGAAAGAGGATTGCCTGGAGGACCGCAAGCTGCGCGTACTGCTATCAATTGGGCACAAGCCCATGTTGACAAGGACTGGAATGAATGGACAGGTGGTAATAGCAACCAATAA

Protein sequence

>Msa1194330

MASSTWCLVPFLIPSSSSIPSLCFSQTTTKCKQRFSFPSINRKVTTLPFSSTKRSITRAAAEYKFPDPIPQFADSETEKFQNHLLNKLSKKDIFEESVEEVVGVCTEIFSTFLHSEYGGPGTLLVDPFVDMADIVNERGLPGGPQAARTAINWAQAHVDKDWNEWTGGNSNQ*