AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648900 MtrunA17_Chr4g0040541 96.127 284 11 0 12 295 1 284 0.0 574
Msa0648900 MtrunA17_Chr2g0324961 79.211 279 52 4 12 288 1 275 1.41e-151 425
Msa0648900 MtrunA17_Chr4g0046431 66.790 271 76 7 24 288 32 294 2.11e-119 345
Msa0648900 MtrunA17_Chr2g0282871 60.140 286 95 8 12 285 1 279 1.95e-111 324
Msa0648900 MtrunA17_Chr8g0367761 73.239 213 50 4 24 231 32 242 3.62e-107 312
Msa0648900 MtrunA17_Chr8g0389661 73.846 195 40 4 37 225 30 219 2.93e-94 286
Msa0648900 MtrunA17_Chr5g0422431 52.968 219 92 4 8 226 16 223 5.22e-70 223
Msa0648900 MtrunA17_Chr1g0198751 56.771 192 78 2 35 226 37 223 4.44e-69 222
Msa0648900 MtrunA17_Chr7g0227071 54.054 185 82 1 35 219 34 215 7.36e-64 209
Msa0648900 MtrunA17_Chr1g0198741 56.637 113 48 1 114 226 7 118 5.53e-34 125
Msa0648900 MtrunA17_Chr3g0091921 28.512 242 144 6 59 293 16 235 6.32e-16 76.6
Msa0648900 MtrunA17_Chr1g0147421 33.333 165 87 7 59 217 27 174 2.47e-15 75.5
Msa0648900 MtrunA17_Chr7g0217711 32.432 148 82 4 54 200 14 144 2.56e-15 72.4
Msa0648900 MtrunA17_Chr7g0217721 29.500 200 98 7 61 240 21 197 7.47e-15 73.9
Msa0648900 MtrunA17_Chr6g0453451 34.722 144 74 5 59 200 20 145 2.50e-14 72.0
Msa0648900 MtrunA17_Chr4g0060931 33.333 144 76 5 59 200 17 142 9.16e-14 70.9
Msa0648900 MtrunA17_Chr7g0214071 32.653 147 76 7 59 202 15 141 1.52e-13 68.9
Msa0648900 MtrunA17_Chr3g0124761 28.641 206 105 8 59 257 7 177 2.54e-13 68.9
Msa0648900 MtrunA17_Chr5g0400461 30.769 169 89 8 59 216 6 157 6.04e-13 68.2
Msa0648900 MtrunA17_Chr6g0484441 32.168 143 79 4 59 200 5 130 6.13e-13 68.2
Msa0648900 MtrunA17_Chr5g0405211 29.310 174 82 8 59 217 8 155 1.38e-12 67.4
Msa0648900 MtrunA17_Chr3g0128151 28.395 162 88 6 44 198 7 147 2.63e-12 67.0
Msa0648900 MtrunA17_Chr8g0359921 31.469 143 80 4 59 200 14 139 9.22e-12 64.7
Msa0648900 MtrunA17_Chr4g0056541 29.480 173 95 7 53 217 1 154 1.03e-11 64.7
Msa0648900 MtrunA17_Chr2g0318101 32.237 152 81 7 57 204 13 146 1.09e-11 64.7
Msa0648900 MtrunA17_Chr5g0398971 29.714 175 94 8 53 217 1 156 1.14e-11 64.7
Msa0648900 MtrunA17_Chr3g0144271 33.557 149 78 6 58 202 22 153 1.38e-11 64.7
Msa0648900 MtrunA17_Chr8g0385991 30.000 150 83 7 54 200 9 139 1.50e-11 63.2
Msa0648900 MtrunA17_Chr8g0384721 30.345 145 82 5 59 202 7 133 2.01e-11 63.2
Msa0648900 MtrunA17_Chr8g0364791 29.143 175 98 7 56 222 3 159 2.71e-11 63.9
Msa0648900 MtrunA17_Chr7g0263931 32.877 146 76 7 59 200 11 138 6.03e-11 62.4
Msa0648900 MtrunA17_Chr3g0092671 32.121 165 84 8 62 217 8 153 6.41e-11 62.8
Msa0648900 MtrunA17_Chr5g0417791 30.769 143 81 5 59 200 3 128 7.54e-11 61.2
Msa0648900 MtrunA17_Chr2g0318081 32.639 144 77 5 59 200 16 141 7.86e-11 62.0
Msa0648900 MtrunA17_Chr1g0183741 29.480 173 99 8 52 219 2 156 8.50e-11 61.2
Msa0648900 MtrunA17_Chr4g0017921 29.448 163 97 6 58 217 7 154 9.63e-11 61.6
Msa0648900 MtrunA17_Chr3g0109821 33.766 154 76 8 58 206 5 137 9.82e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648900 AT4G28500.1 78.680 197 41 1 32 228 33 228 1.29e-113 330
Msa0648900 AT1G28470.1 78.462 195 39 2 34 226 50 243 1.06e-107 315
Msa0648900 AT4G29230.3 70.297 202 48 2 35 229 29 225 1.81e-97 294
Msa0648900 AT4G29230.1 70.297 202 48 2 35 229 29 225 7.99e-97 294
Msa0648900 AT4G29230.2 69.802 202 48 2 35 229 29 224 5.93e-96 292
Msa0648900 AT5G56620.3 65.025 203 57 4 37 229 25 223 4.78e-89 271
Msa0648900 AT5G56620.2 65.025 203 57 4 37 229 25 223 5.23e-89 271
Msa0648900 AT5G56620.1 65.025 203 57 4 37 229 25 223 1.06e-88 270
Msa0648900 AT1G25580.1 57.368 190 70 4 35 224 37 215 2.61e-66 214
Msa0648900 AT5G14490.2 50.532 188 88 3 37 224 36 218 1.38e-54 179
Msa0648900 AT5G14490.4 50.532 188 88 3 37 224 36 218 2.94e-54 180
Msa0648900 AT5G14490.1 50.532 188 88 3 37 224 39 221 3.77e-54 180
Msa0648900 AT5G14490.3 50.532 188 88 3 37 224 39 221 4.92e-54 180
Msa0648900 AT3G01600.1 45.972 211 98 4 26 221 7 216 6.72e-50 169
Msa0648900 AT3G04060.1 31.667 180 98 6 51 222 12 174 4.14e-15 75.1
Msa0648900 AT5G61430.1 34.965 143 75 5 59 200 16 141 4.94e-15 74.7
Msa0648900 AT5G18270.2 32.778 180 94 7 52 222 14 175 1.62e-14 73.2
Msa0648900 AT5G53950.1 31.959 194 97 9 48 229 9 179 7.46e-14 71.6
Msa0648900 AT5G39610.1 34.722 144 74 5 59 200 20 145 7.97e-14 70.9
Msa0648900 AT1G02230.1 31.638 177 95 7 60 229 4 161 9.53e-14 71.2
Msa0648900 AT1G01720.1 32.000 150 83 5 53 201 1 132 1.24e-13 70.1
Msa0648900 AT5G07680.2 30.769 169 93 5 59 220 3 154 1.38e-13 70.5
Msa0648900 AT5G07680.1 30.769 169 93 5 59 220 17 168 1.49e-13 70.5
Msa0648900 AT4G36160.1 32.738 168 86 7 58 217 9 157 2.17e-13 70.1
Msa0648900 AT4G36160.3 32.738 168 86 7 58 217 9 157 2.17e-13 70.1
Msa0648900 AT4G36160.2 32.738 168 86 7 58 217 13 161 2.20e-13 70.1
Msa0648900 AT5G04410.1 30.539 167 90 6 59 217 9 157 4.25e-13 69.7
Msa0648900 AT1G02220.1 33.566 143 74 6 60 199 4 128 6.80e-13 68.9
Msa0648900 AT1G12260.2 30.058 173 94 8 53 217 1 154 1.89e-12 67.4
Msa0648900 AT1G12260.1 30.058 173 94 8 53 217 1 154 1.93e-12 67.4
Msa0648900 AT5G46590.1 29.697 165 94 7 59 216 6 155 2.77e-12 66.2
Msa0648900 AT2G33480.2 29.878 164 92 7 59 219 15 158 6.76e-12 65.1
Msa0648900 AT2G33480.1 30.872 149 82 6 59 206 15 143 6.90e-12 65.1
Msa0648900 AT5G08790.1 31.250 144 80 5 59 201 7 132 8.35e-12 64.7
Msa0648900 AT5G46590.2 31.081 148 85 6 59 204 6 138 1.00e-11 64.7
Msa0648900 AT5G13180.1 31.548 168 87 9 59 219 14 160 1.83e-11 63.5
Msa0648900 AT1G34190.1 31.293 147 79 6 62 204 19 147 3.18e-11 64.3
Msa0648900 AT1G62700.1 29.480 173 95 7 53 217 1 154 3.40e-11 63.9
Msa0648900 AT1G62700.2 29.480 173 95 7 53 217 1 154 3.40e-11 63.9
Msa0648900 AT1G61110.1 32.877 146 79 6 57 200 14 142 3.96e-11 63.2
Msa0648900 AT1G76420.1 29.834 181 94 8 58 227 21 179 4.11e-11 63.2
Msa0648900 AT3G12977.1 25.103 243 123 9 59 287 18 215 4.32e-11 62.8
Msa0648900 AT1G34180.1 31.544 149 78 7 62 206 19 147 4.40e-11 63.5
Msa0648900 AT1G34180.3 31.544 149 78 7 62 206 19 147 6.06e-11 63.2

Find 98 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTCTCATTTCACTAAT+TGG 0.156652 4_3:-55441173 None:intergenic
CAGTAGTTCAAGATTGCTTT+AGG 0.212119 4_3:+55441250 Msa0648900:three_prime_UTR
TTCTGAGTGCATAATATTAA+AGG 0.213571 4_3:+55441148 Msa0648900:three_prime_UTR
ATTATGAAAGACTCTATTCT+TGG 0.244819 4_3:+55440600 Msa0648900:CDS
CCTACTCTTGAAGGAGAAAA+TGG 0.244985 4_3:+55436738 Msa0648900:CDS
AGAAAAGATATCTCTATAAA+TGG 0.286637 4_3:+55436089 Msa0648900:five_prime_UTR
CTTGTACTTTACACAAACTA+TGG 0.313224 4_3:+55440435 Msa0648900:CDS
TTCATTTGAAAACTATACTA+TGG 0.315540 4_3:+55441004 Msa0648900:three_prime_UTR
TCAAGAGATTCTTGAACATT+TGG 0.316828 4_3:+55436659 Msa0648900:CDS
GAAAATGGTGGGGAAGAATT+AGG 0.326347 4_3:+55440972 Msa0648900:three_prime_UTR
GAAAGGCAGAGAAAACAAAT+TGG 0.326530 4_3:+55440466 Msa0648900:CDS
TAAAACTTGTATGAAGAAAA+AGG 0.335452 4_3:+55441209 Msa0648900:three_prime_UTR
TATATACCTGGTAGTTTCTC+TGG 0.365477 4_3:-55436777 None:intergenic
GCTCTAGTTAGGATGGAAAA+TGG 0.378110 4_3:+55440957 Msa0648900:three_prime_UTR
CCATCCTAACTAGAGCATAT+AGG 0.392802 4_3:-55440950 None:intergenic
GGTGAAAGAAATGGCGGATC+AGG 0.399922 4_3:-55440266 None:intergenic
AGTAGTTCAAGATTGCTTTA+GGG 0.400028 4_3:+55441251 Msa0648900:three_prime_UTR
ATTGAAGGGTAATTATTAAG+AGG 0.400064 4_3:+55440829 Msa0648900:three_prime_UTR
TTCACTCCAGCTGGCAATCC+AGG 0.423620 4_3:-55436621 None:intergenic
CACTTGAATCAAGGATTGAA+TGG 0.428533 4_3:-55440783 None:intergenic
CATAGTTTGTGTAAAGTACA+AGG 0.433161 4_3:-55440434 None:intergenic
ATAACCTATATGCTCTAGTT+AGG 0.436331 4_3:+55440946 Msa0648900:three_prime_UTR
TTAAAGTGAAGATTCGTCAT+TGG 0.437408 4_3:-55441115 None:intergenic
GAGTTCATCCCTACTCTTGA+AGG 0.437508 4_3:+55436729 Msa0648900:CDS
GCTATAGAAGATTAAATTGA+AGG 0.437520 4_3:+55440814 Msa0648900:three_prime_UTR
TAAGAGGCCAATAATTGAAA+AGG 0.437585 4_3:+55440845 Msa0648900:three_prime_UTR
TGATCCGCCATTTCTTTCAC+CGG 0.439231 4_3:+55440268 Msa0648900:CDS
CTTGTCCACCACTTGAATCA+AGG 0.444328 4_3:-55440792 None:intergenic
TGTTCCTGTTGTGTATGCCT+TGG 0.446215 4_3:-55440295 None:intergenic
CTATTGCTATATAAAACAAA+TGG 0.460148 4_3:-55436048 None:intergenic
GAAACCCGTTGGCATAAAAC+AGG 0.460349 4_3:+55440360 Msa0648900:CDS
AACTTGGAATTGTTGTAGAC+TGG 0.461374 4_3:-55440393 None:intergenic
TCTTCAGGAGTAAGCAAAGA+TGG 0.468322 4_3:+55440243 Msa0648900:intron
CCATCCAAGGCATACACAAC+AGG 0.469431 4_3:+55440291 Msa0648900:CDS
AATAAAAGTGTTCCTCTCGC+TGG 0.479328 4_3:-55441077 None:intergenic
CTCTATAAATGGAATGATTG+AGG 0.481258 4_3:+55436100 Msa0648900:exon
GAATTACCACCACACTGTCT+TGG 0.486516 4_3:-55440573 None:intergenic
TTGTGTATGCCTTGGATGGC+CGG 0.487616 4_3:-55440287 None:intergenic
GACTTACCTGGATTGCCAGC+TGG 0.488076 4_3:+55436615 Msa0648900:CDS
AATTTCATATCATTTGATCA+AGG 0.491183 4_3:+55440708 Msa0648900:CDS
TCTTGAACATTTGGAAGCAA+AGG 0.493075 4_3:+55436668 Msa0648900:CDS
AAAGGCAGAGAAAACAAATT+GGG 0.493263 4_3:+55440467 Msa0648900:CDS
GTGATGCATCAGTATCATCT+TGG 0.493893 4_3:+55440489 Msa0648900:CDS
CCTATATGCTCTAGTTAGGA+TGG 0.494711 4_3:+55440950 Msa0648900:three_prime_UTR
TTGAGTTTGATAGAAAACTT+TGG 0.497854 4_3:-55440550 None:intergenic
ATTTCATATCATTTGATCAA+GGG 0.503525 4_3:+55440709 Msa0648900:CDS
TAATAAAAGTGATAGAGAAA+AGG 0.506987 4_3:-55435951 None:intergenic
TGATGCATCAGTATCATCTT+GGG 0.507024 4_3:+55440490 Msa0648900:CDS
TCATATCAAAGGGCAAGATC+AGG 0.513679 4_3:+55436238 Msa0648900:CDS
GGATCAAACTTCACTCCAGC+TGG 0.519384 4_3:-55436630 None:intergenic
AGAACGGTTGAGTTAAGAGA+AGG 0.519523 4_3:-55435997 None:intergenic
TAGTTAGGATGGAAAATGGT+GGG 0.521369 4_3:+55440961 Msa0648900:three_prime_UTR
CATTCAATCCTTGATTCAAG+TGG 0.522358 4_3:+55440784 Msa0648900:exon
AATAATAGCATCACAGTGGA+TGG 0.523592 4_3:+55436173 Msa0648900:CDS
GAGCATTGCTAGACCTATGT+TGG 0.524291 4_3:-55440734 None:intergenic
GGGATGAACTCATCAATTAG+AGG 0.528142 4_3:-55436717 None:intergenic
TACAACAATTCCAAGTTGAA+AGG 0.529222 4_3:+55440399 Msa0648900:CDS
AAACTATGGAAAACAAAGAA+AGG 0.529627 4_3:+55440449 Msa0648900:CDS
ACATGTGGTCATCATATCAA+AGG 0.530280 4_3:+55436227 Msa0648900:CDS
TTGATCAAGGGAACCAACAT+AGG 0.533507 4_3:+55440721 Msa0648900:CDS
TCAAGAATCTCTTGATCTGT+AGG 0.534425 4_3:-55436651 None:intergenic
TGGATGGCCGGTGAAAGAAA+TGG 0.540700 4_3:-55440275 None:intergenic
CATCACAGTGGATGGAAGAA+AGG 0.544845 4_3:+55436181 Msa0648900:CDS
GGTGGAATTAATGACTTACC+TGG 0.548384 4_3:+55436603 Msa0648900:CDS
TCAATCCTTGATTCAAGTGG+TGG 0.549183 4_3:+55440787 Msa0648900:exon
CCTGTTGTGTATGCCTTGGA+TGG 0.549971 4_3:-55440291 None:intergenic
CATGTGGTCATCATATCAAA+GGG 0.557094 4_3:+55436228 Msa0648900:CDS
AGTGATGAAGAAGAGAAAGA+AGG 0.559824 4_3:+55440513 Msa0648900:CDS
GGAACAGAAACTAAAAGAGA+AGG 0.560294 4_3:-55436027 None:intergenic
TTTCTTTCACCGGCCATCCA+AGG 0.565155 4_3:+55440278 Msa0648900:CDS
GAAGGGTCAAAGTGGGAATG+AGG 0.565748 4_3:+55440632 Msa0648900:CDS
AAGAGAAGGGACAGAGAGAA+CGG 0.572639 4_3:-55436013 None:intergenic
AAACTATGAAGGGTCAAAGT+GGG 0.577178 4_3:+55440625 Msa0648900:CDS
AGTGGGAATGAGGTAATCAA+TGG 0.579023 4_3:+55440642 Msa0648900:CDS
CTATAGAAGATTAAATTGAA+GGG 0.588583 4_3:+55440815 Msa0648900:three_prime_UTR
TGCAACTACTTGTTGAAGTG+TGG 0.591394 4_3:-55435887 None:intergenic
GAACAGAAACTAAAAGAGAA+GGG 0.591832 4_3:-55436026 None:intergenic
ACTCATCCAGAGAAACTACC+AGG 0.603901 4_3:+55436771 Msa0648900:CDS
AAAACTATGAAGGGTCAAAG+TGG 0.604850 4_3:+55440624 Msa0648900:CDS
GTACATTCGGATCACGAGGA+CGG 0.605336 4_3:+55440333 Msa0648900:CDS
TTCAACAAGTAGTTGCATGA+GGG 0.606047 4_3:+55435893 Msa0648900:five_prime_UTR
AGTTAGGATGGAAAATGGTG+GGG 0.615663 4_3:+55440962 Msa0648900:three_prime_UTR
GGATGAACTCATCAATTAGA+GGG 0.619021 4_3:-55436716 None:intergenic
AACATTTGGAAGCAAAGGTG+AGG 0.627859 4_3:+55436673 Msa0648900:CDS
TCAACAAGTAGTTGCATGAG+GGG 0.632583 4_3:+55435894 Msa0648900:five_prime_UTR
GCAACTACTTGTTGAAGTGT+GGG 0.633027 4_3:-55435886 None:intergenic
ATTAGAACTTGTCTCACATG+TGG 0.635438 4_3:+55436212 Msa0648900:CDS
TTGTTGAAGACTCCAGCGAG+AGG 0.639755 4_3:+55441065 Msa0648900:three_prime_UTR
CTACTTGTTGAAGTGTGGGA+AGG 0.641423 4_3:-55435882 None:intergenic
CTAGTTAGGATGGAAAATGG+TGG 0.641734 4_3:+55440960 Msa0648900:three_prime_UTR
AGGACGGAAGCGAAACCCGT+TGG 0.648723 4_3:+55440349 Msa0648900:CDS
CTTCAACAAGTAGTTGCATG+AGG 0.652525 4_3:+55435892 Msa0648900:five_prime_UTR
CAAAGTATATATTAATACTG+AGG 0.662016 4_3:+55440875 Msa0648900:three_prime_UTR
AAAAGTACATTCGGATCACG+AGG 0.691199 4_3:+55440329 Msa0648900:CDS
AAACAATAATAGCATCACAG+TGG 0.704092 4_3:+55436169 Msa0648900:CDS
ATGGCCGGTGAAAGAAATGG+CGG 0.706386 4_3:-55440272 None:intergenic
CAAACTCAACCAAGACAGTG+TGG 0.711030 4_3:+55440564 Msa0648900:CDS
ACTCAACCAAGACAGTGTGG+TGG 0.739755 4_3:+55440567 Msa0648900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+AGG - chr4_3:55436943-55436962 None:intergenic 0.0%
!! ATATCAATGAAAAATAATTA+GGG + chr4_3:55436579-55436598 Msa0648900:intron 10.0%
!! TTTCAAGATAAATTAATAAA+AGG + chr4_3:55438229-55438248 Msa0648900:intron 10.0%
!!! AAAACTATTTTTCAATAAAT+TGG - chr4_3:55438306-55438325 None:intergenic 10.0%
!!! ATTTAATTTACTCAAAAAAT+TGG + chr4_3:55439953-55439972 Msa0648900:intron 10.0%
!! ATGATAAATAATGTTTATCA+TGG - chr4_3:55436287-55436306 None:intergenic 15.0%
!!! AGTCCTTATTTTAATTTTAT+AGG + chr4_3:55436370-55436389 Msa0648900:intron 15.0%
!!! GTCCTTATTTTAATTTTATA+GGG + chr4_3:55436371-55436390 Msa0648900:intron 15.0%
!!! AAAAAAAGTTATTAGTTTCT+AGG - chr4_3:55436517-55436536 None:intergenic 15.0%
!!! AACTTTTTTTTCTTTTAGTT+TGG + chr4_3:55436527-55436546 Msa0648900:intron 15.0%
!! GATATCAATGAAAAATAATT+AGG + chr4_3:55436578-55436597 Msa0648900:intron 15.0%
!!! ATAAGTTTACCTTTTATTTT+AGG + chr4_3:55436900-55436919 Msa0648900:intron 15.0%
!! CATATTTAACCTAAAATAAA+AGG - chr4_3:55436912-55436931 None:intergenic 15.0%
!! ACATTAAAATATACATAAGT+TGG - chr4_3:55437155-55437174 None:intergenic 15.0%
!!! AAAGTGAAATTTATTTTTAG+AGG + chr4_3:55437411-55437430 Msa0648900:intron 15.0%
!!! AAGTGAAATTTATTTTTAGA+GGG + chr4_3:55437412-55437431 Msa0648900:intron 15.0%
!!! TTTATTTTCATTGAATAACA+TGG + chr4_3:55437487-55437506 Msa0648900:intron 15.0%
!! AAATTAACATTTCAATATTC+AGG + chr4_3:55437657-55437676 Msa0648900:intron 15.0%
!!! AATTGATGATGTTTTTTTTA+AGG + chr4_3:55437704-55437723 Msa0648900:intron 15.0%
!!! ATTGATGATGTTTTTTTTAA+GGG + chr4_3:55437705-55437724 Msa0648900:intron 15.0%
!! CTAAGATTATAAGAATTATT+AGG - chr4_3:55438283-55438302 None:intergenic 15.0%
!!! TTTTTATTAAGTAAGATACA+TGG - chr4_3:55438380-55438399 None:intergenic 15.0%
!! TGAAAATAAAATTGTAATGT+TGG - chr4_3:55438834-55438853 None:intergenic 15.0%
!! CAATATTCATATAAACTTAA+TGG - chr4_3:55439023-55439042 None:intergenic 15.0%
!! CATTAAGTTTATATGAATAT+TGG + chr4_3:55439021-55439040 Msa0648900:intron 15.0%
!! TTGCAATTAAAAAAATTGAA+TGG - chr4_3:55439101-55439120 None:intergenic 15.0%
!!! AGTTTTATTTATCTTAGTTT+GGG - chr4_3:55439524-55439543 None:intergenic 15.0%
!!! TAGTTTTATTTATCTTAGTT+TGG - chr4_3:55439525-55439544 None:intergenic 15.0%
!! AGATAAATAAAACTAAAGAA+TGG + chr4_3:55439530-55439549 Msa0648900:intron 15.0%
!! GATAAATAAAACTAAAGAAT+GGG + chr4_3:55439531-55439550 Msa0648900:intron 15.0%
!! ATAAATAAAACTAAAGAATG+GGG + chr4_3:55439532-55439551 Msa0648900:intron 15.0%
!!! TTATGTATTTAATTTGAGTT+CGG + chr4_3:55439806-55439825 Msa0648900:intron 15.0%
!! AAATTGAATTATATTTCTTC+AGG + chr4_3:55440228-55440247 Msa0648900:intron 15.0%
!! TAATAAAAGTGATAGAGAAA+AGG - chr4_3:55435954-55435973 None:intergenic 20.0%
!! CTATTGCTATATAAAACAAA+TGG - chr4_3:55436051-55436070 None:intergenic 20.0%
!! AGAAAAGATATCTCTATAAA+TGG + chr4_3:55436089-55436108 Msa0648900:five_prime_UTR 20.0%
!! GTCCCTATAAAATTAAAATA+AGG - chr4_3:55436376-55436395 None:intergenic 20.0%
!! TATTGTATGTAATATATACC+TGG - chr4_3:55436792-55436811 None:intergenic 20.0%
!!! ATGGTGATTGAAAATTTTAT+AGG - chr4_3:55437112-55437131 None:intergenic 20.0%
!! TTAAAAATAGGGACAAAAAA+TGG - chr4_3:55437131-55437150 None:intergenic 20.0%
!! TATGAGTTTACTTAAAATGA+TGG + chr4_3:55437353-55437372 Msa0648900:intron 20.0%
!! TGTGATTTAATTAGCATAAA+TGG - chr4_3:55437604-55437623 None:intergenic 20.0%
!! TGAAATTAAAATGATAGAGA+AGG - chr4_3:55437632-55437651 None:intergenic 20.0%
!! AATATTCAGGCTAATAATAA+TGG + chr4_3:55437670-55437689 Msa0648900:intron 20.0%
!! AAACATCAAAAGAAAATGAA+TGG - chr4_3:55437790-55437809 None:intergenic 20.0%
!! ACAACTACTTTAATAGATTA+TGG - chr4_3:55437896-55437915 None:intergenic 20.0%
!! TGCGAATTTAATGATAAATA+AGG + chr4_3:55437934-55437953 Msa0648900:intron 20.0%
!! AAGATTCATTGATATAAACT+AGG + chr4_3:55438558-55438577 Msa0648900:intron 20.0%
!! AGATTCATTGATATAAACTA+GGG + chr4_3:55438559-55438578 Msa0648900:intron 20.0%
!!! TTTTAACTCGATTTTAATGT+TGG - chr4_3:55438757-55438776 None:intergenic 20.0%
!! GTTTACATTTCTTACATTAT+AGG - chr4_3:55438899-55438918 None:intergenic 20.0%
!! ATTAAAAAAATTGAATGGAG+AGG - chr4_3:55439096-55439115 None:intergenic 20.0%
!! ATTATTAAAAGGGTAACTAA+AGG + chr4_3:55439130-55439149 Msa0648900:intron 20.0%
!!! TTCTTTTTTATACAACTGTA+TGG - chr4_3:55439311-55439330 None:intergenic 20.0%
!! AGTTATGGGTTTATAATTTA+GGG - chr4_3:55439431-55439450 None:intergenic 20.0%
!! CAAACTCTAATATCAAATTA+GGG - chr4_3:55439499-55439518 None:intergenic 20.0%
!! ACAAACTCTAATATCAAATT+AGG - chr4_3:55439500-55439519 None:intergenic 20.0%
!! TAAATAAAACTAAAGAATGG+GGG + chr4_3:55439533-55439552 Msa0648900:intron 20.0%
!!! ATGAATTTGATAACAAATCT+GGG - chr4_3:55439622-55439641 None:intergenic 20.0%
!!! ATTTGTTATCAAATTCATCA+CGG + chr4_3:55439624-55439643 Msa0648900:intron 20.0%
!!! AATATTGACATTTTACTATG+TGG + chr4_3:55439743-55439762 Msa0648900:intron 20.0%
!!! TATGTATTTAATTTGAGTTC+GGG + chr4_3:55439807-55439826 Msa0648900:intron 20.0%
!! TTGAGTAAATTAAATGAGTT+CGG - chr4_3:55439948-55439967 None:intergenic 20.0%
!!! TTTTTTGTCTAATTGTGAAT+TGG - chr4_3:55440045-55440064 None:intergenic 20.0%
!!! AAAAAGAAGAAAAGTACATT+CGG + chr4_3:55440320-55440339 Msa0648900:CDS 20.0%
!! AATTTCATATCATTTGATCA+AGG + chr4_3:55440708-55440727 Msa0648900:CDS 20.0%
!! ATTTCATATCATTTGATCAA+GGG + chr4_3:55440709-55440728 Msa0648900:CDS 20.0%
!! CTATAGAAGATTAAATTGAA+GGG + chr4_3:55440815-55440834 Msa0648900:three_prime_UTR 20.0%
!! CAAAGTATATATTAATACTG+AGG + chr4_3:55440875-55440894 Msa0648900:three_prime_UTR 20.0%
!! TTCATTTGAAAACTATACTA+TGG + chr4_3:55441004-55441023 Msa0648900:three_prime_UTR 20.0%
!! TAAAACTTGTATGAAGAAAA+AGG + chr4_3:55441209-55441228 Msa0648900:three_prime_UTR 20.0%
! GGAAAAAAAGAGGAAAAAAA+AGG + chr4_3:55436121-55436140 Msa0648900:CDS 25.0%
!!! TGATGCTATTATTGTTTTGA+GGG - chr4_3:55436166-55436185 None:intergenic 25.0%
! GTAGAGACTAAATTAAAAAG+TGG + chr4_3:55436479-55436498 Msa0648900:intron 25.0%
! TCAATGAAAAATAATTAGGG+TGG + chr4_3:55436582-55436601 Msa0648900:intron 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - chr4_3:55437083-55437102 None:intergenic 25.0%
! TTATAGGTACTAAAAGTTGA+AGG - chr4_3:55437096-55437115 None:intergenic 25.0%
!! CATAAGTTGGCTTAAAAATA+GGG - chr4_3:55437142-55437161 None:intergenic 25.0%
!! ACATAAGTTGGCTTAAAAAT+AGG - chr4_3:55437143-55437162 None:intergenic 25.0%
! TGGCAGTTAAAAATTGATAT+TGG - chr4_3:55437216-55437235 None:intergenic 25.0%
!!! TGAAAACGGAAATTTTTTGA+AGG + chr4_3:55437384-55437403 Msa0648900:intron 25.0%
!!! GAAAACGGAAATTTTTTGAA+GGG + chr4_3:55437385-55437404 Msa0648900:intron 25.0%
! GCTAATAATAATGGTTAAGA+GGG + chr4_3:55437679-55437698 Msa0648900:intron 25.0%
! ATCAAAAGAAAATGAATGGA+GGG - chr4_3:55437786-55437805 None:intergenic 25.0%
!! CACTAAAACATCAAAAGTTT+TGG - chr4_3:55437831-55437850 None:intergenic 25.0%
!! ATTAAAGTAGTTGTGACTTT+TGG + chr4_3:55437902-55437921 Msa0648900:intron 25.0%
! AGCTAAAACATCAAAAGAAA+AGG + chr4_3:55438021-55438040 Msa0648900:intron 25.0%
! AAACATCAAAAGAAAAGGAA+TGG + chr4_3:55438026-55438045 Msa0648900:intron 25.0%
! GTGCTTATAAAAATAGACAA+GGG - chr4_3:55438078-55438097 None:intergenic 25.0%
! AGTGCTTATAAAAATAGACA+AGG - chr4_3:55438079-55438098 None:intergenic 25.0%
! AACATTGCATATATTATGCA+AGG + chr4_3:55438504-55438523 Msa0648900:intron 25.0%
! GATTCATTGATATAAACTAG+GGG + chr4_3:55438560-55438579 Msa0648900:intron 25.0%
! AAATTCAAACCAAACAAATG+CGG + chr4_3:55438680-55438699 Msa0648900:intron 25.0%
! TAGAGACTAAATTAAAAACG+TGG + chr4_3:55438862-55438881 Msa0648900:intron 25.0%
!! GTTTATATGAATATTGGTCT+AGG + chr4_3:55439027-55439046 Msa0648900:intron 25.0%
!! ATTTTTCTTATGTTGCAGTT+TGG + chr4_3:55439238-55439257 Msa0648900:intron 25.0%
!! TTTTATACAACTGTATGGTT+TGG - chr4_3:55439306-55439325 None:intergenic 25.0%
! GTTATGGGTTTATAATTTAG+GGG - chr4_3:55439430-55439449 None:intergenic 25.0%
! GAGTTATGGGTTTATAATTT+AGG - chr4_3:55439432-55439451 None:intergenic 25.0%
!! TCTACACTTTCAAACATTTT+TGG + chr4_3:55439450-55439469 Msa0648900:intron 25.0%
!! GTTTTGTCAAATATCAATGA+GGG + chr4_3:55439585-55439604 Msa0648900:intron 25.0%
!! GATGAATTTGATAACAAATC+TGG - chr4_3:55439623-55439642 None:intergenic 25.0%
!!! TGACTTTCTGTTGATTTTAT+AGG - chr4_3:55439699-55439718 None:intergenic 25.0%
! AATCAACAGAAAGTCAATAT+TGG + chr4_3:55439703-55439722 Msa0648900:intron 25.0%
! ATGTGGCAAAAAAAATCTAA+CGG + chr4_3:55439885-55439904 Msa0648900:intron 25.0%
! ATCTAACGGTTAAGTATAAA+TGG + chr4_3:55439899-55439918 Msa0648900:intron 25.0%
! TGAGTAAATTAAATGAGTTC+GGG - chr4_3:55439947-55439966 None:intergenic 25.0%
!! TTTCTATTAGTTTGAACTCA+AGG - chr4_3:55440005-55440024 None:intergenic 25.0%
! GAGTTCAAACTAATAGAAAA+AGG + chr4_3:55440006-55440025 Msa0648900:intron 25.0%
! TAGTACAAGACAAATAGTTT+AGG + chr4_3:55440093-55440112 Msa0648900:intron 25.0%
!!! ATAGTTTAGGATGCTTTTTA+AGG + chr4_3:55440106-55440125 Msa0648900:intron 25.0%
!!! TTTTTTGTAACCTTTCAACT+TGG - chr4_3:55440412-55440431 None:intergenic 25.0%
! AAACTATGGAAAACAAAGAA+AGG + chr4_3:55440449-55440468 Msa0648900:CDS 25.0%
! TTGAGTTTGATAGAAAACTT+TGG - chr4_3:55440553-55440572 None:intergenic 25.0%
! ATTATGAAAGACTCTATTCT+TGG + chr4_3:55440600-55440619 Msa0648900:CDS 25.0%
! TATTCTTGGAAAAACTATGA+AGG + chr4_3:55440614-55440633 Msa0648900:CDS 25.0%
! ATTCTTGGAAAAACTATGAA+GGG + chr4_3:55440615-55440634 Msa0648900:CDS 25.0%
! GCTATAGAAGATTAAATTGA+AGG + chr4_3:55440814-55440833 Msa0648900:three_prime_UTR 25.0%
! ATTGAAGGGTAATTATTAAG+AGG + chr4_3:55440829-55440848 Msa0648900:three_prime_UTR 25.0%
!! TTCATCTCCTTTTCAATTAT+TGG - chr4_3:55440855-55440874 None:intergenic 25.0%
! TTCTGAGTGCATAATATTAA+AGG + chr4_3:55441148-55441167 Msa0648900:three_prime_UTR 25.0%
GAACAGAAACTAAAAGAGAA+GGG - chr4_3:55436029-55436048 None:intergenic 30.0%
CTCTATAAATGGAATGATTG+AGG + chr4_3:55436100-55436119 Msa0648900:exon 30.0%
GAATGATTGAGGAAAAAAAG+AGG + chr4_3:55436111-55436130 Msa0648900:exon 30.0%
!! GTGATGCTATTATTGTTTTG+AGG - chr4_3:55436167-55436186 None:intergenic 30.0%
AAACAATAATAGCATCACAG+TGG + chr4_3:55436169-55436188 Msa0648900:CDS 30.0%
CAGGTTCCTTAATTAAAACT+TGG + chr4_3:55436257-55436276 Msa0648900:intron 30.0%
!!! GGCAAACCAAGTTTTAATTA+AGG - chr4_3:55436266-55436285 None:intergenic 30.0%
AGGGACTAAATTTAATGACT+AGG + chr4_3:55436390-55436409 Msa0648900:intron 30.0%
ATGAAAAATAATTAGGGTGG+TGG + chr4_3:55436585-55436604 Msa0648900:intron 30.0%
TCAAGAGATTCTTGAACATT+TGG + chr4_3:55436659-55436678 Msa0648900:CDS 30.0%
! TTCTATTTTCTTTTTGTGCG+TGG + chr4_3:55437274-55437293 Msa0648900:intron 30.0%
TGATGGAACAAAAGTGAAAA+CGG + chr4_3:55437370-55437389 Msa0648900:intron 30.0%
! CGTTGAAGTAACATTTTTGT+AGG + chr4_3:55437567-55437586 Msa0648900:intron 30.0%
GGCTAATAATAATGGTTAAG+AGG + chr4_3:55437678-55437697 Msa0648900:intron 30.0%
!!! AATGGATTAGAACTTTTGAC+CGG - chr4_3:55437750-55437769 None:intergenic 30.0%
CATCAAAAGAAAATGAATGG+AGG - chr4_3:55437787-55437806 None:intergenic 30.0%
! ATTATGGTGTTTTCCAACAA+GGG - chr4_3:55437880-55437899 None:intergenic 30.0%
!!! TCTTTTGATGTTTTAGCTCT+TGG - chr4_3:55438019-55438038 None:intergenic 30.0%
ATCAAAAGAAAAGGAATGGA+GGG + chr4_3:55438030-55438049 Msa0648900:intron 30.0%
!!! TGTTTTTTCATCTTGCAGTT+CGG - chr4_3:55438629-55438648 None:intergenic 30.0%
! TATATGAATATTGGTCTAGG+TGG + chr4_3:55439030-55439049 Msa0648900:intron 30.0%
! ATATGAATATTGGTCTAGGT+GGG + chr4_3:55439031-55439050 Msa0648900:intron 30.0%
!!! GTTTTTCTATTGGATTGGTT+CGG + chr4_3:55439395-55439414 Msa0648900:intron 30.0%
! GTTTGAAAGTGTAGAGTTAT+GGG - chr4_3:55439445-55439464 None:intergenic 30.0%
! TGTTTGAAAGTGTAGAGTTA+TGG - chr4_3:55439446-55439465 None:intergenic 30.0%
!! GGTTTTGTCAAATATCAATG+AGG + chr4_3:55439584-55439603 Msa0648900:intron 30.0%
! AATTTGATAACAAATCTGGG+TGG - chr4_3:55439619-55439638 None:intergenic 30.0%
CATTAAAATAGCAATGCCAT+GGG - chr4_3:55439676-55439695 None:intergenic 30.0%
!! TAAATGGAGATTAGCCTAAA+TGG - chr4_3:55439839-55439858 None:intergenic 30.0%
ATCTCCATTTACTCCATTTA+AGG + chr4_3:55439848-55439867 Msa0648900:intron 30.0%
CAAACCTTAAATGGAGTAAA+TGG - chr4_3:55439855-55439874 None:intergenic 30.0%
! CATTTACTCCATTTAAGGTT+TGG + chr4_3:55439853-55439872 Msa0648900:intron 30.0%
AGCTTGATAAATAAGAAGCT+AGG - chr4_3:55440167-55440186 None:intergenic 30.0%
! TTTTACCTGTTTTATGCCAA+CGG - chr4_3:55440368-55440387 None:intergenic 30.0%
! TACAACAATTCCAAGTTGAA+AGG + chr4_3:55440399-55440418 Msa0648900:CDS 30.0%
! CATAGTTTGTGTAAAGTACA+AGG - chr4_3:55440437-55440456 None:intergenic 30.0%
CTTGTACTTTACACAAACTA+TGG + chr4_3:55440435-55440454 Msa0648900:CDS 30.0%
AAAGGCAGAGAAAACAAATT+GGG + chr4_3:55440467-55440486 Msa0648900:CDS 30.0%
TAAGAGGCCAATAATTGAAA+AGG + chr4_3:55440845-55440864 Msa0648900:three_prime_UTR 30.0%
ATAACCTATATGCTCTAGTT+AGG + chr4_3:55440946-55440965 Msa0648900:three_prime_UTR 30.0%
! ATGGATCAGATTCTTTTGTT+AGG + chr4_3:55441023-55441042 Msa0648900:three_prime_UTR 30.0%
TTAAAGTGAAGATTCGTCAT+TGG - chr4_3:55441118-55441137 None:intergenic 30.0%
TGTTGTCTCATTTCACTAAT+TGG - chr4_3:55441176-55441195 None:intergenic 30.0%
AGTAGTTCAAGATTGCTTTA+GGG + chr4_3:55441251-55441270 Msa0648900:three_prime_UTR 30.0%
TTCAACAAGTAGTTGCATGA+GGG + chr4_3:55435893-55435912 Msa0648900:five_prime_UTR 35.0%
GGAACAGAAACTAAAAGAGA+AGG - chr4_3:55436030-55436049 None:intergenic 35.0%
AATAATAGCATCACAGTGGA+TGG + chr4_3:55436173-55436192 Msa0648900:CDS 35.0%
ATTAGAACTTGTCTCACATG+TGG + chr4_3:55436212-55436231 Msa0648900:CDS 35.0%
ACATGTGGTCATCATATCAA+AGG + chr4_3:55436227-55436246 Msa0648900:CDS 35.0%
CATGTGGTCATCATATCAAA+GGG + chr4_3:55436228-55436247 Msa0648900:CDS 35.0%
TCAAGAATCTCTTGATCTGT+AGG - chr4_3:55436654-55436673 None:intergenic 35.0%
TCTTGAACATTTGGAAGCAA+AGG + chr4_3:55436668-55436687 Msa0648900:CDS 35.0%
GGATGAACTCATCAATTAGA+GGG - chr4_3:55436719-55436738 None:intergenic 35.0%
! CATTTTCTCCTTCAAGAGTA+GGG - chr4_3:55436740-55436759 None:intergenic 35.0%
TATATACCTGGTAGTTTCTC+TGG - chr4_3:55436780-55436799 None:intergenic 35.0%
TTGAATAACATGGTCAGAAG+TGG + chr4_3:55437497-55437516 Msa0648900:intron 35.0%
TTCATGTTGCTGAAGTCTAA+AGG - chr4_3:55437527-55437546 None:intergenic 35.0%
! CATTTTTGTAGGAGAAGATG+TGG + chr4_3:55437578-55437597 Msa0648900:intron 35.0%
! TTTTGACCGGTTGTTTAAAG+GGG - chr4_3:55437737-55437756 None:intergenic 35.0%
! CTTTTGACCGGTTGTTTAAA+GGG - chr4_3:55437738-55437757 None:intergenic 35.0%
! ACTTTTGACCGGTTGTTTAA+AGG - chr4_3:55437739-55437758 None:intergenic 35.0%
! GAGGGAGTAGTTTTTAACAA+TGG - chr4_3:55437768-55437787 None:intergenic 35.0%
TTTCTCAAGTTTACCCTTGT+TGG + chr4_3:55437864-55437883 Msa0648900:intron 35.0%
! GATTATGGTGTTTTCCAACA+AGG - chr4_3:55437881-55437900 None:intergenic 35.0%
CATCAAAAGAAAAGGAATGG+AGG + chr4_3:55438029-55438048 Msa0648900:intron 35.0%
ATGTATTCGTGTCAGATACA+TGG - chr4_3:55438421-55438440 None:intergenic 35.0%
!!! CATCACTCATTTTGAAGTGT+CGG + chr4_3:55438438-55438457 Msa0648900:intron 35.0%
!!! ATCACTCATTTTGAAGTGTC+GGG + chr4_3:55438439-55438458 Msa0648900:intron 35.0%
!!! GGGTTCATAGATTTTTTTGG+TGG + chr4_3:55438461-55438480 Msa0648900:intron 35.0%
CTGCAAGATGAAAAAACATG+TGG + chr4_3:55438631-55438650 Msa0648900:intron 35.0%
ACCAAACAAATGCGGTTTAT+TGG + chr4_3:55438688-55438707 Msa0648900:intron 35.0%
TCCAATAAACCGCATTTGTT+TGG - chr4_3:55438692-55438711 None:intergenic 35.0%
ACAAATGCGGTTTATTGGAT+TGG + chr4_3:55438693-55438712 Msa0648900:intron 35.0%
!! GTTTATTGGATTGGTTTGTG+CGG + chr4_3:55438702-55438721 Msa0648900:intron 35.0%
!! TTTATTGGATTGGTTTGTGC+GGG + chr4_3:55438703-55438722 Msa0648900:intron 35.0%
TCTTATGTTGCAGTTTGGTT+CGG + chr4_3:55439243-55439262 Msa0648900:intron 35.0%
!! TACAACTGTATGGTTTGGTT+CGG - chr4_3:55439301-55439320 None:intergenic 35.0%
!! GCATTTGGTTTGGATGTATT+CGG - chr4_3:55439336-55439355 None:intergenic 35.0%
GAATACATCCAAACCAAATG+CGG + chr4_3:55439335-55439354 Msa0648900:intron 35.0%
ACAAAAAACCGCATTTGGTT+TGG - chr4_3:55439346-55439365 None:intergenic 35.0%
!!! AAACCAAATGCGGTTTTTTG+TGG + chr4_3:55439345-55439364 Msa0648900:intron 35.0%
AAACCACAAAAAACCGCATT+TGG - chr4_3:55439351-55439370 None:intergenic 35.0%
!!! AATGCGGTTTTTTGTGGTTT+CGG + chr4_3:55439351-55439370 Msa0648900:intron 35.0%
! TTTGTGGTTTCGGTTTGAAT+TGG + chr4_3:55439361-55439380 Msa0648900:intron 35.0%
! TTGCGGTTTTTCTATTGGAT+TGG + chr4_3:55439390-55439409 Msa0648900:intron 35.0%
ATGGGGGATAAATTCTAAAC+CGG + chr4_3:55439549-55439568 Msa0648900:intron 35.0%
CTTAGCTTCAAATATACCCA+TGG + chr4_3:55439657-55439676 Msa0648900:intron 35.0%
GCATTAAAATAGCAATGCCA+TGG - chr4_3:55439677-55439696 None:intergenic 35.0%
TCTTGCATCCAAACCTTAAA+TGG - chr4_3:55439864-55439883 None:intergenic 35.0%
TAAATGGAGCTTAGCCTAAA+TGG + chr4_3:55439915-55439934 Msa0648900:intron 35.0%
AACTCAAGGAATCAAGTCTT+TGG - chr4_3:55439991-55440010 None:intergenic 35.0%
!!! AGGATGCTTTTTAAGGTTGA+TGG + chr4_3:55440113-55440132 Msa0648900:intron 35.0%
GAAGCTAGGTACAAAGTTAT+GGG - chr4_3:55440153-55440172 None:intergenic 35.0%
AGAAGCTAGGTACAAAGTTA+TGG - chr4_3:55440154-55440173 None:intergenic 35.0%
TGTTAATTCACTACTGCAGA+TGG - chr4_3:55440205-55440224 None:intergenic 35.0%
! TTTACCTGTTTTATGCCAAC+GGG - chr4_3:55440367-55440386 None:intergenic 35.0%
AACTTGGAATTGTTGTAGAC+TGG - chr4_3:55440396-55440415 None:intergenic 35.0%
GAAAGGCAGAGAAAACAAAT+TGG + chr4_3:55440466-55440485 Msa0648900:CDS 35.0%
TGATGCATCAGTATCATCTT+GGG + chr4_3:55440490-55440509 Msa0648900:CDS 35.0%
AGTGATGAAGAAGAGAAAGA+AGG + chr4_3:55440513-55440532 Msa0648900:CDS 35.0%
AAAACTATGAAGGGTCAAAG+TGG + chr4_3:55440624-55440643 Msa0648900:CDS 35.0%
AAACTATGAAGGGTCAAAGT+GGG + chr4_3:55440625-55440644 Msa0648900:CDS 35.0%
AATGGCAAAAACAGTACTAG+TGG + chr4_3:55440660-55440679 Msa0648900:CDS 35.0%
CACTTGAATCAAGGATTGAA+TGG - chr4_3:55440786-55440805 None:intergenic 35.0%
CATTCAATCCTTGATTCAAG+TGG + chr4_3:55440784-55440803 Msa0648900:exon 35.0%
TAGTTAGGATGGAAAATGGT+GGG + chr4_3:55440961-55440980 Msa0648900:three_prime_UTR 35.0%
CAGTAGTTCAAGATTGCTTT+AGG + chr4_3:55441250-55441269 Msa0648900:three_prime_UTR 35.0%
! GCAACTACTTGTTGAAGTGT+GGG - chr4_3:55435889-55435908 None:intergenic 40.0%
! TGCAACTACTTGTTGAAGTG+TGG - chr4_3:55435890-55435909 None:intergenic 40.0%
CTTCAACAAGTAGTTGCATG+AGG + chr4_3:55435892-55435911 Msa0648900:five_prime_UTR 40.0%
TCAACAAGTAGTTGCATGAG+GGG + chr4_3:55435894-55435913 Msa0648900:five_prime_UTR 40.0%
AGAACGGTTGAGTTAAGAGA+AGG - chr4_3:55436000-55436019 None:intergenic 40.0%
TCATATCAAAGGGCAAGATC+AGG + chr4_3:55436238-55436257 Msa0648900:CDS 40.0%
GGTGGAATTAATGACTTACC+TGG + chr4_3:55436603-55436622 Msa0648900:CDS 40.0%
AACATTTGGAAGCAAAGGTG+AGG + chr4_3:55436673-55436692 Msa0648900:CDS 40.0%
GGGATGAACTCATCAATTAG+AGG - chr4_3:55436720-55436739 None:intergenic 40.0%
! CCATTTTCTCCTTCAAGAGT+AGG - chr4_3:55436741-55436760 None:intergenic 40.0%
CCTACTCTTGAAGGAGAAAA+TGG + chr4_3:55436738-55436757 Msa0648900:CDS 40.0%
ATCAGACCCCTTTAAACAAC+CGG + chr4_3:55437728-55437747 Msa0648900:intron 40.0%
! AGCTCTTGGCACAAGTTTTA+AGG - chr4_3:55438005-55438024 None:intergenic 40.0%
!!! TCACTCATTTTGAAGTGTCG+GGG + chr4_3:55438440-55438459 Msa0648900:intron 40.0%
!!! CGGGGGTTCATAGATTTTTT+TGG + chr4_3:55438458-55438477 Msa0648900:intron 40.0%
! TGAACTTAGCTCAGTTGGTA+GGG - chr4_3:55438531-55438550 None:intergenic 40.0%
!! ATATAAACTAGGGGTGTTCG+CGG + chr4_3:55438569-55438588 Msa0648900:intron 40.0%
!! CAGTTTGGTTCGGTTTAGTT+CGG + chr4_3:55439253-55439272 Msa0648900:intron 40.0%
! GGTTTCGGTTTGAATTGGTT+CGG + chr4_3:55439366-55439385 Msa0648900:intron 40.0%
!! GTTTGAATTGGTTCGGTTTG+CGG + chr4_3:55439373-55439392 Msa0648900:intron 40.0%
!! TCGGTTTGCGGTTTTTCTAT+TGG + chr4_3:55439385-55439404 Msa0648900:intron 40.0%
!! GATCTTTAGAGCATAGACGT+CGG - chr4_3:55439477-55439496 None:intergenic 40.0%
CAAAACCAAGTTTCAGTGAC+CGG - chr4_3:55439571-55439590 None:intergenic 40.0%
TGATAACAAATCTGGGTGGA+GGG - chr4_3:55439615-55439634 None:intergenic 40.0%
! TTGATAACAAATCTGGGTGG+AGG - chr4_3:55439616-55439635 None:intergenic 40.0%
TCTTCAGGAGTAAGCAAAGA+TGG + chr4_3:55440243-55440262 Msa0648900:intron 40.0%
! AAAAGTACATTCGGATCACG+AGG + chr4_3:55440329-55440348 Msa0648900:CDS 40.0%
GTGATGCATCAGTATCATCT+TGG + chr4_3:55440489-55440508 Msa0648900:CDS 40.0%
AGTGGGAATGAGGTAATCAA+TGG + chr4_3:55440642-55440661 Msa0648900:CDS 40.0%
TTGATCAAGGGAACCAACAT+AGG + chr4_3:55440721-55440740 Msa0648900:CDS 40.0%
TCAATCCTTGATTCAAGTGG+TGG + chr4_3:55440787-55440806 Msa0648900:exon 40.0%
CCATCCTAACTAGAGCATAT+AGG - chr4_3:55440953-55440972 None:intergenic 40.0%
CCTATATGCTCTAGTTAGGA+TGG + chr4_3:55440950-55440969 Msa0648900:three_prime_UTR 40.0%
GCTCTAGTTAGGATGGAAAA+TGG + chr4_3:55440957-55440976 Msa0648900:three_prime_UTR 40.0%
CTAGTTAGGATGGAAAATGG+TGG + chr4_3:55440960-55440979 Msa0648900:three_prime_UTR 40.0%
AGTTAGGATGGAAAATGGTG+GGG + chr4_3:55440962-55440981 Msa0648900:three_prime_UTR 40.0%
! GAAAATGGTGGGGAAGAATT+AGG + chr4_3:55440972-55440991 Msa0648900:three_prime_UTR 40.0%
!! AATAAAAGTGTTCCTCTCGC+TGG - chr4_3:55441080-55441099 None:intergenic 40.0%
! CTACTTGTTGAAGTGTGGGA+AGG - chr4_3:55435885-55435904 None:intergenic 45.0%
AAGAGAAGGGACAGAGAGAA+CGG - chr4_3:55436016-55436035 None:intergenic 45.0%
CATCACAGTGGATGGAAGAA+AGG + chr4_3:55436181-55436200 Msa0648900:CDS 45.0%
GAGTTCATCCCTACTCTTGA+AGG + chr4_3:55436729-55436748 Msa0648900:CDS 45.0%
ACTCATCCAGAGAAACTACC+AGG + chr4_3:55436771-55436790 Msa0648900:CDS 45.0%
!!! CACTCATTTTGAAGTGTCGG+GGG + chr4_3:55438441-55438460 Msa0648900:intron 45.0%
GTGAACTTAGCTCAGTTGGT+AGG - chr4_3:55438532-55438551 None:intergenic 45.0%
ACCAACTGAGCTAAGTTCAC+AGG + chr4_3:55438532-55438551 Msa0648900:intron 45.0%
CCAACTGAGCTAAGTTCACA+GGG + chr4_3:55438533-55438552 Msa0648900:intron 45.0%
!! TGCGGTTTAGTTCGGTTTTG+AGG + chr4_3:55438592-55438611 Msa0648900:intron 45.0%
! TGAATATTGGTCTAGGTGGG+AGG + chr4_3:55439034-55439053 Msa0648900:intron 45.0%
! GAATATTGGTCTAGGTGGGA+GGG + chr4_3:55439035-55439054 Msa0648900:intron 45.0%
! AATATTGGTCTAGGTGGGAG+GGG + chr4_3:55439036-55439055 Msa0648900:intron 45.0%
TTGAATGGAGAGGATCTCAC+TGG - chr4_3:55439086-55439105 None:intergenic 45.0%
GCATCCAGTGAAATTCTCAC+TGG + chr4_3:55439172-55439191 Msa0648900:intron 45.0%
CTCTCCAGTGAGAATTTCAC+TGG - chr4_3:55439179-55439198 None:intergenic 45.0%
CAGTGAAATTCTCACTGGAG+AGG + chr4_3:55439177-55439196 Msa0648900:intron 45.0%
GAACATATGTCACCTAGACC+AGG - chr4_3:55439211-55439230 None:intergenic 45.0%
!! GTATGGTTTGGTTCGGTTTG+CGG - chr4_3:55439294-55439313 None:intergenic 45.0%
CTAAACCGGTCACTGAAACT+TGG + chr4_3:55439563-55439582 Msa0648900:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG + chr4_3:55439822-55439841 Msa0648900:intron 45.0%
AGGTTTGGATGCAAGACATG+TGG + chr4_3:55439868-55439887 Msa0648900:intron 45.0%
AGTTCGGGTATGCTCCATTT+AGG - chr4_3:55439822-55439841 None:intergenic 45.0%
TGATCCGCCATTTCTTTCAC+CGG + chr4_3:55440268-55440287 Msa0648900:CDS 45.0%
TGTTCCTGTTGTGTATGCCT+TGG - chr4_3:55440298-55440317 None:intergenic 45.0%
GAAACCCGTTGGCATAAAAC+AGG + chr4_3:55440360-55440379 Msa0648900:CDS 45.0%
CAAACTCAACCAAGACAGTG+TGG + chr4_3:55440564-55440583 Msa0648900:CDS 45.0%
GAATTACCACCACACTGTCT+TGG - chr4_3:55440576-55440595 None:intergenic 45.0%
! GAGCATTGCTAGACCTATGT+TGG - chr4_3:55440737-55440756 None:intergenic 45.0%
CTTGTCCACCACTTGAATCA+AGG - chr4_3:55440795-55440814 None:intergenic 45.0%
!!! AATATGAATTTTTATATTTT+TGG - chr4_3:55437236-55437255 None:intergenic 5.0%
!!! TAATTTATAAATGATATTTT+AGG - chr4_3:55438177-55438196 None:intergenic 5.0%
!! AAACATTTATAATTATTAAA+AGG + chr4_3:55439119-55439138 Msa0648900:intron 5.0%
!! AACATTTATAATTATTAAAA+GGG + chr4_3:55439120-55439139 Msa0648900:intron 5.0%
GGATCAAACTTCACTCCAGC+TGG - chr4_3:55436633-55436652 None:intergenic 50.0%
CCCTGTGAACTTAGCTCAGT+TGG - chr4_3:55438536-55438555 None:intergenic 50.0%
ATGTCACCTAGACCAGGACT+TGG - chr4_3:55439205-55439224 None:intergenic 50.0%
!! GGTGAAAGAAATGGCGGATC+AGG - chr4_3:55440269-55440288 None:intergenic 50.0%
ATGGCCGGTGAAAGAAATGG+CGG - chr4_3:55440275-55440294 None:intergenic 50.0%
TGGATGGCCGGTGAAAGAAA+TGG - chr4_3:55440278-55440297 None:intergenic 50.0%
TTTCTTTCACCGGCCATCCA+AGG + chr4_3:55440278-55440297 Msa0648900:CDS 50.0%
TTGTGTATGCCTTGGATGGC+CGG - chr4_3:55440290-55440309 None:intergenic 50.0%
CCTGTTGTGTATGCCTTGGA+TGG - chr4_3:55440294-55440313 None:intergenic 50.0%
CCATCCAAGGCATACACAAC+AGG + chr4_3:55440291-55440310 Msa0648900:CDS 50.0%
GTACATTCGGATCACGAGGA+CGG + chr4_3:55440333-55440352 Msa0648900:CDS 50.0%
ACTCAACCAAGACAGTGTGG+TGG + chr4_3:55440567-55440586 Msa0648900:CDS 50.0%
GAAGGGTCAAAGTGGGAATG+AGG + chr4_3:55440632-55440651 Msa0648900:CDS 50.0%
TTGTTGAAGACTCCAGCGAG+AGG + chr4_3:55441065-55441084 Msa0648900:three_prime_UTR 50.0%
GACTTACCTGGATTGCCAGC+TGG + chr4_3:55436615-55436634 Msa0648900:CDS 55.0%
TTCACTCCAGCTGGCAATCC+AGG - chr4_3:55436624-55436643 None:intergenic 55.0%
GTTCGCGGTGCGGTTTAGTT+CGG + chr4_3:55438584-55438603 Msa0648900:intron 55.0%
AGGGGATTCTCTCCTGTGAC+TGG + chr4_3:55439054-55439073 Msa0648900:intron 55.0%
CACTGGAACTCTCCAGTCAC+AGG - chr4_3:55439069-55439088 None:intergenic 55.0%
ACTGGAGAGGATCCAAGTCC+TGG + chr4_3:55439190-55439209 Msa0648900:intron 55.0%
GAGGATCCAAGTCCTGGTCT+AGG + chr4_3:55439196-55439215 Msa0648900:intron 55.0%
!! AACTAGGGGTGTTCGCGGTG+CGG + chr4_3:55438574-55438593 Msa0648900:intron 60.0%
AGGACGGAAGCGAAACCCGT+TGG + chr4_3:55440349-55440368 Msa0648900:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55435875 55441288 55435875 ID=Msa0648900;Name=Msa0648900
chr4_3 mRNA 55435875 55441288 55435875 ID=Msa0648900-mRNA-1;Parent=Msa0648900;Name=Msa0648900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=238|1|1|1|1|1|3|491|295
chr4_3 exon 55435875 55436259 55435875 ID=Msa0648900-mRNA-1:exon:14174;Parent=Msa0648900-mRNA-1
chr4_3 exon 55436600 55436792 55436600 ID=Msa0648900-mRNA-1:exon:14175;Parent=Msa0648900-mRNA-1
chr4_3 exon 55440250 55441288 55440250 ID=Msa0648900-mRNA-1:exon:14176;Parent=Msa0648900-mRNA-1
chr4_3 five_prime_UTR 55435875 55436112 55435875 ID=Msa0648900-mRNA-1:five_prime_utr;Parent=Msa0648900-mRNA-1
chr4_3 CDS 55436113 55436259 55436113 ID=Msa0648900-mRNA-1:cds;Parent=Msa0648900-mRNA-1
chr4_3 CDS 55436600 55436792 55436600 ID=Msa0648900-mRNA-1:cds;Parent=Msa0648900-mRNA-1
chr4_3 CDS 55440250 55440797 55440250 ID=Msa0648900-mRNA-1:cds;Parent=Msa0648900-mRNA-1
chr4_3 three_prime_UTR 55440798 55441288 55440798 ID=Msa0648900-mRNA-1:three_prime_utr;Parent=Msa0648900-mRNA-1
Gene Sequence

>Msa0648900

ATGATTGAGGAAAAAAAGAGGAAAAAAAAGGAAATGACTCAGTGCAGTGACCCTCAAAACAATAATAGCATCACAGTGGATGGAAGAAAGGACAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAAGGGCAAGATCAGGGTGGTGGAATTAATGACTTACCTGGATTGCCAGCTGGAGTGAAGTTTGATCCTACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAGGTGAGGTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAAAATGGAATCTGCTATACTCATCCAGAGAAACTACCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGGCCATCCAAGGCATACACAACAGGAACAAGAAAAAGAAGAAAAGTACATTCGGATCACGAGGACGGAAGCGAAACCCGTTGGCATAAAACAGGTAAAACTAGACCAGTCTACAACAATTCCAAGTTGAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAACAAAGAAAGGCAGAGAAAACAAATTGGGTGATGCATCAGTATCATCTTGGGAGTGATGAAGAAGAGAAAGAAGGAGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAGTGTGGTGGTAATTCATTGATTATGAAAGACTCTATTCTTGGAAAAACTATGAAGGGTCAAAGTGGGAATGAGGTAATCAATGGCAAAAACAGTACTAGTGGATCATTTGTTGAATATTATCAATCAAATTTCATATCATTTGATCAAGGGAACCAACATAGGTCTAGCAATGCTCAAGTAATTTCACATTTTGAAAGTGTTCCATTCAATCCTTGA
Protein sequence

>Msa0648900

MIEEKKRKKKEMTQCSDPQNNNSITVDGRKDSLIRTCLTCGHHIKGQDQGGGINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKAEKTNWVMHQYHLGSDEEEKEGVLVVSKVFYQTQPRQCGGNSLIMKDSILGKTMKGQSGNEVINGKNSTSGSFVEYYQSNFISFDQGNQHRSSNAQVISHFESVPFNP*