Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692310 | XP_003607732.3 | 96.316 | 190 | 7 | 0 | 22 | 211 | 25 | 214 | 7.15e-128 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692310 | sp|G7JG80|CASP2_MEDTR | 96.296 | 189 | 7 | 0 | 23 | 211 | 1 | 189 | 5.46e-130 | 366 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692310 | A0A396IGM0 | 96.316 | 190 | 7 | 0 | 22 | 211 | 30 | 219 | 6.25e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0609720 | Msa0692310 | 0.930866 | 8.762799e-94 | -8.615850e-47 |
| Msa0631700 | Msa0692310 | 0.827048 | 1.939375e-54 | -8.615850e-47 |
| Msa0650310 | Msa0692310 | 0.935304 | 1.046509e-96 | -8.615850e-47 |
| Msa0650440 | Msa0692310 | 0.924883 | 3.878318e-90 | -8.615850e-47 |
| Msa0259110 | Msa0692310 | 0.809639 | 1.712909e-50 | -8.615850e-47 |
| Msa0259300 | Msa0692310 | 0.812829 | 3.481039e-51 | -8.615850e-47 |
| Msa0342130 | Msa0692310 | 0.805498 | 1.296794e-49 | -8.615850e-47 |
| Msa0342160 | Msa0692310 | 0.800875 | 1.174056e-48 | -8.615850e-47 |
| Msa0535570 | Msa0692310 | 0.809597 | 1.748764e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692310 | MtrunA17_Chr4g0042551 | 96.316 | 190 | 7 | 0 | 22 | 211 | 30 | 219 | 1.20e-131 | 369 |
| Msa0692310 | MtrunA17_Chr5g0417761 | 65.241 | 187 | 64 | 1 | 23 | 209 | 1 | 186 | 3.21e-77 | 229 |
| Msa0692310 | MtrunA17_Chr7g0217691 | 56.216 | 185 | 79 | 1 | 24 | 208 | 3 | 185 | 3.67e-69 | 209 |
| Msa0692310 | MtrunA17_Chr1g0178181 | 39.698 | 199 | 113 | 1 | 10 | 208 | 3 | 194 | 1.04e-38 | 132 |
| Msa0692310 | MtrunA17_Chr2g0321671 | 42.614 | 176 | 101 | 0 | 34 | 209 | 45 | 220 | 3.62e-37 | 129 |
| Msa0692310 | MtrunA17_Chr1g0178191 | 42.328 | 189 | 104 | 1 | 25 | 208 | 5 | 193 | 7.05e-36 | 125 |
| Msa0692310 | MtrunA17_Chr1g0178161 | 40.462 | 173 | 103 | 0 | 36 | 208 | 23 | 195 | 1.44e-35 | 124 |
| Msa0692310 | MtrunA17_Chr4g0021111 | 35.220 | 159 | 94 | 2 | 44 | 202 | 1 | 150 | 5.81e-18 | 77.4 |
| Msa0692310 | MtrunA17_Chr7g0268681 | 30.519 | 154 | 102 | 3 | 49 | 199 | 27 | 178 | 1.11e-17 | 77.4 |
| Msa0692310 | MtrunA17_Chr7g0251531 | 32.716 | 162 | 104 | 3 | 32 | 191 | 11 | 169 | 1.89e-14 | 68.9 |
| Msa0692310 | MtrunA17_Chr4g0066721 | 27.273 | 143 | 95 | 2 | 52 | 186 | 34 | 175 | 7.93e-14 | 67.4 |
| Msa0692310 | MtrunA17_Chr8g0381001 | 29.412 | 187 | 107 | 6 | 37 | 202 | 2 | 184 | 5.20e-13 | 65.1 |
| Msa0692310 | MtrunA17_Chr5g0433491 | 29.487 | 156 | 101 | 3 | 48 | 202 | 34 | 181 | 1.87e-12 | 63.9 |
| Msa0692310 | MtrunA17_Chr4g0066711 | 31.481 | 162 | 95 | 8 | 52 | 206 | 29 | 181 | 1.75e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692310 | AT5G15290.1 | 56.548 | 168 | 70 | 2 | 23 | 189 | 1 | 166 | 7.04e-62 | 191 |
| Msa0692310 | AT1G14160.1 | 47.449 | 196 | 92 | 2 | 21 | 208 | 16 | 208 | 2.41e-59 | 186 |
| Msa0692310 | AT2G27370.1 | 48.503 | 167 | 86 | 0 | 43 | 209 | 54 | 220 | 1.39e-47 | 156 |
| Msa0692310 | AT2G36100.1 | 44.767 | 172 | 95 | 0 | 37 | 208 | 34 | 205 | 2.14e-41 | 139 |
| Msa0692310 | AT5G06200.1 | 50.000 | 166 | 83 | 0 | 43 | 208 | 36 | 201 | 3.54e-40 | 136 |
| Msa0692310 | AT3G11550.1 | 43.523 | 193 | 107 | 1 | 16 | 208 | 13 | 203 | 4.73e-37 | 128 |
| Msa0692310 | AT4G15620.1 | 30.688 | 189 | 105 | 6 | 32 | 206 | 13 | 189 | 2.69e-18 | 79.3 |
| Msa0692310 | AT4G15630.1 | 28.856 | 201 | 114 | 6 | 20 | 206 | 4 | 189 | 8.84e-17 | 75.5 |
| Msa0692310 | AT1G03700.1 | 32.895 | 152 | 87 | 3 | 54 | 202 | 12 | 151 | 2.92e-16 | 73.6 |
| Msa0692310 | AT4G03540.1 | 38.095 | 105 | 52 | 2 | 90 | 191 | 46 | 140 | 8.77e-14 | 67.0 |
| Msa0692310 | AT3G06390.1 | 28.467 | 137 | 93 | 2 | 51 | 182 | 37 | 173 | 4.62e-11 | 60.1 |
Find 40 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCTGCGGACGCATTTC+CGG | 0.160143 | 4_4:+60758365 | Msa0692310:CDS |
| ACTTGGAAGTGCATTGAGTA+TGG | 0.314679 | 4_4:+60757500 | Msa0692310:CDS |
| GAATATAAGAGAATCAAATT+TGG | 0.317707 | 4_4:+60757347 | Msa0692310:CDS |
| GTCTCCACTATTTCAATGCT+TGG | 0.317947 | 4_4:-60758465 | None:intergenic |
| ATGTTTGGTCTTCTTACATC+TGG | 0.318237 | 4_4:+60758257 | Msa0692310:CDS |
| TGTCATTCTTCCACATTGTA+AGG | 0.389122 | 4_4:+60757749 | Msa0692310:CDS |
| GGACTATTTCAGTGAAAAGT+AGG | 0.406947 | 4_4:+60757770 | Msa0692310:CDS |
| CGCATTTCCGGTTCACTCGT+TGG | 0.423380 | 4_4:+60758377 | Msa0692310:CDS |
| ATGATACTTATTCTCATGTC+AGG | 0.427186 | 4_4:+60758425 | Msa0692310:CDS |
| GTAGCCACATACAATAGAAT+TGG | 0.428984 | 4_4:-60757707 | None:intergenic |
| ATTGTTTATGTAGCTCACTA+TGG | 0.441275 | 4_4:+60758299 | Msa0692310:CDS |
| GGAGCATCATCCCAAAGAAA+AGG | 0.450818 | 4_4:+60757417 | Msa0692310:CDS |
| TCTCTTGGTCTTTCTTGATA+CGG | 0.450983 | 4_4:+60757795 | Msa0692310:CDS |
| GAACTTGTGAAGGTTATGTT+TGG | 0.469308 | 4_4:+60758242 | Msa0692310:intron |
| GAAGAGAGGGCTTTCAATAG+TGG | 0.469842 | 4_4:+60757443 | Msa0692310:CDS |
| ATGGAAATCCCAGTGCCAAT+TGG | 0.476221 | 4_4:+60758318 | Msa0692310:CDS |
| GAAAGAGCCAACGAGTGAAC+CGG | 0.477626 | 4_4:-60758384 | None:intergenic |
| CTAACAAAACGTGTGGCAAA+AGG | 0.478599 | 4_4:-60757543 | None:intergenic |
| AGTGAAAAGTAGGATTCTCT+TGG | 0.484716 | 4_4:+60757780 | Msa0692310:CDS |
| GAAAGGAAACCAATTGGCAC+TGG | 0.490083 | 4_4:-60758327 | None:intergenic |
| CGCAGAAGGAGTTGTATTGT+TGG | 0.495681 | 4_4:-60758352 | None:intergenic |
| TTGGCAGAAAGGAAACCAAT+TGG | 0.505370 | 4_4:-60758333 | None:intergenic |
| GAGAGCGGTGAAATTTCAAA+AGG | 0.513548 | 4_4:+60757396 | Msa0692310:CDS |
| GAGTTGTATTGTTGGCAGAA+AGG | 0.513691 | 4_4:-60758344 | None:intergenic |
| GAGCATCATCCCAAAGAAAA+GGG | 0.519493 | 4_4:+60757418 | Msa0692310:CDS |
| AACAATGGCTGCTGCTGCTG+AGG | 0.545248 | 4_4:-60758282 | None:intergenic |
| ACCGGAAATGCGTCCGCAGA+AGG | 0.551171 | 4_4:-60758366 | None:intergenic |
| TTTGCAGCTATAAGCACACT+TGG | 0.563238 | 4_4:+60757483 | Msa0692310:CDS |
| TTACAATGTGGAAGAATGAC+AGG | 0.568556 | 4_4:-60757747 | None:intergenic |
| CTTGGAAGTGCATTGAGTAT+GGG | 0.582334 | 4_4:+60757501 | Msa0692310:CDS |
| AAAGAAAAGGGATGAAGAGA+GGG | 0.589149 | 4_4:+60757430 | Msa0692310:CDS |
| ACTACCAATTCTATTGTATG+TGG | 0.592296 | 4_4:+60757703 | Msa0692310:CDS |
| AAAGGAAACCAATTGGCACT+GGG | 0.608159 | 4_4:-60758326 | None:intergenic |
| CAAAGAAAAGGGATGAAGAG+AGG | 0.610616 | 4_4:+60757429 | Msa0692310:CDS |
| CAACAATACAACTCCTTCTG+CGG | 0.614837 | 4_4:+60758353 | Msa0692310:CDS |
| AGAGTGAACAAGTATCAGAA+TGG | 0.617085 | 4_4:-60757319 | None:intergenic |
| CTGAAATAGTCCTTACAATG+TGG | 0.618479 | 4_4:-60757759 | None:intergenic |
| TTTGAATCTAACAAAACGTG+TGG | 0.624264 | 4_4:-60757550 | None:intergenic |
| ATAGTGAGCTACATAAACAA+TGG | 0.652493 | 4_4:-60758297 | None:intergenic |
| AAGGTGAGTACAATTGAGAG+CGG | 0.725157 | 4_4:+60757381 | Msa0692310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATTTGATTAATTTC+AGG | + | chr4_4:60757671-60757690 | Msa0692310:intron | 15.0% |
| !! | ATTCATATTTGATTAATTTC+AGG | + | chr4_4:60757671-60757690 | Msa0692310:intron | 15.0% |
| !! | GAATATAAGAGAATCAAATT+TGG | + | chr4_4:60757347-60757366 | Msa0692310:CDS | 20.0% |
| !!! | AAATTTGGAACAAAAAATGA+AGG | + | chr4_4:60757362-60757381 | Msa0692310:CDS | 20.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | - | chr4_4:60757633-60757652 | None:intergenic | 20.0% |
| !! | TTATATATCTGTTTGGTTAA+TGG | + | chr4_4:60757870-60757889 | Msa0692310:intron | 20.0% |
| !! | TATATATCTGTTTGGTTAAT+GGG | + | chr4_4:60757871-60757890 | Msa0692310:intron | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | - | chr4_4:60757977-60757996 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | - | chr4_4:60758134-60758153 | None:intergenic | 20.0% |
| !! | GAATATAAGAGAATCAAATT+TGG | + | chr4_4:60757347-60757366 | Msa0692310:CDS | 20.0% |
| !!! | AAATTTGGAACAAAAAATGA+AGG | + | chr4_4:60757362-60757381 | Msa0692310:CDS | 20.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | - | chr4_4:60757633-60757652 | None:intergenic | 20.0% |
| !! | TTATATATCTGTTTGGTTAA+TGG | + | chr4_4:60757870-60757889 | Msa0692310:intron | 20.0% |
| !! | TATATATCTGTTTGGTTAAT+GGG | + | chr4_4:60757871-60757890 | Msa0692310:intron | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | - | chr4_4:60757977-60757996 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | - | chr4_4:60758134-60758153 | None:intergenic | 20.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | - | chr4_4:60757594-60757613 | None:intergenic | 25.0% |
| ! | TCCAAAGTTATATATCTGTT+TGG | + | chr4_4:60757863-60757882 | Msa0692310:intron | 25.0% |
| ! | ACCAAACAGATATATAACTT+TGG | - | chr4_4:60757867-60757886 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | - | chr4_4:60757928-60757947 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | - | chr4_4:60758013-60758032 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | - | chr4_4:60758027-60758046 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | - | chr4_4:60758109-60758128 | None:intergenic | 25.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | - | chr4_4:60757594-60757613 | None:intergenic | 25.0% |
| ! | TCCAAAGTTATATATCTGTT+TGG | + | chr4_4:60757863-60757882 | Msa0692310:intron | 25.0% |
| ! | ACCAAACAGATATATAACTT+TGG | - | chr4_4:60757867-60757886 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | - | chr4_4:60757928-60757947 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | - | chr4_4:60758013-60758032 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | - | chr4_4:60758027-60758046 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | - | chr4_4:60758109-60758128 | None:intergenic | 25.0% |
| TTTGAATCTAACAAAACGTG+TGG | - | chr4_4:60757553-60757572 | None:intergenic | 30.0% | |
| TGACTTACAAAAATGTTGGA+AGG | - | chr4_4:60757590-60757609 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | + | chr4_4:60757703-60757722 | Msa0692310:CDS | 30.0% | |
| GTTTAACGACTATGTACTAA+CGG | - | chr4_4:60758087-60758106 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | - | chr4_4:60758110-60758129 | None:intergenic | 30.0% | |
| GGAAAATTTCCTACATAAAC+TGG | + | chr4_4:60758177-60758196 | Msa0692310:intron | 30.0% | |
| CTAAAATGTCCAGTTTATGT+AGG | - | chr4_4:60758189-60758208 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGA+AGG | + | chr4_4:60758232-60758251 | Msa0692310:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | - | chr4_4:60758300-60758319 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | + | chr4_4:60758299-60758318 | Msa0692310:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | + | chr4_4:60758425-60758444 | Msa0692310:CDS | 30.0% | |
| TTTGAATCTAACAAAACGTG+TGG | - | chr4_4:60757553-60757572 | None:intergenic | 30.0% | |
| TGACTTACAAAAATGTTGGA+AGG | - | chr4_4:60757590-60757609 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | + | chr4_4:60757703-60757722 | Msa0692310:CDS | 30.0% | |
| GTTTAACGACTATGTACTAA+CGG | - | chr4_4:60758087-60758106 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | - | chr4_4:60758110-60758129 | None:intergenic | 30.0% | |
| GGAAAATTTCCTACATAAAC+TGG | + | chr4_4:60758177-60758196 | Msa0692310:intron | 30.0% | |
| CTAAAATGTCCAGTTTATGT+AGG | - | chr4_4:60758189-60758208 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGA+AGG | + | chr4_4:60758232-60758251 | Msa0692310:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | - | chr4_4:60758300-60758319 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | + | chr4_4:60758299-60758318 | Msa0692310:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | + | chr4_4:60758425-60758444 | Msa0692310:CDS | 30.0% | |
| AGAGTGAACAAGTATCAGAA+TGG | - | chr4_4:60757322-60757341 | None:intergenic | 35.0% | |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | - | chr4_4:60757430-60757449 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | + | chr4_4:60757430-60757449 | Msa0692310:CDS | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | - | chr4_4:60757710-60757729 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | - | chr4_4:60757750-60757769 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | + | chr4_4:60757749-60757768 | Msa0692310:CDS | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | - | chr4_4:60757762-60757781 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | + | chr4_4:60757770-60757789 | Msa0692310:CDS | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | + | chr4_4:60757780-60757799 | Msa0692310:CDS | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | + | chr4_4:60757795-60757814 | Msa0692310:CDS | 35.0% |
| !! | TCTGTTTGGTTAATGGGTTA+AGG | + | chr4_4:60757877-60757896 | Msa0692310:intron | 35.0% |
| !! | CTGTTTGGTTAATGGGTTAA+GGG | + | chr4_4:60757878-60757897 | Msa0692310:intron | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | + | chr4_4:60757879-60757898 | Msa0692310:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | - | chr4_4:60758162-60758181 | None:intergenic | 35.0% | |
| GAACTTGTGAAGGTTATGTT+TGG | + | chr4_4:60758242-60758261 | Msa0692310:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | + | chr4_4:60758257-60758276 | Msa0692310:CDS | 35.0% |
| AGAGTGAACAAGTATCAGAA+TGG | - | chr4_4:60757322-60757341 | None:intergenic | 35.0% | |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | - | chr4_4:60757430-60757449 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | + | chr4_4:60757430-60757449 | Msa0692310:CDS | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | - | chr4_4:60757710-60757729 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | - | chr4_4:60757750-60757769 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | + | chr4_4:60757749-60757768 | Msa0692310:CDS | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | - | chr4_4:60757762-60757781 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | + | chr4_4:60757770-60757789 | Msa0692310:CDS | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | + | chr4_4:60757780-60757799 | Msa0692310:CDS | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | + | chr4_4:60757795-60757814 | Msa0692310:CDS | 35.0% |
| !! | TCTGTTTGGTTAATGGGTTA+AGG | + | chr4_4:60757877-60757896 | Msa0692310:intron | 35.0% |
| !! | CTGTTTGGTTAATGGGTTAA+GGG | + | chr4_4:60757878-60757897 | Msa0692310:intron | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | + | chr4_4:60757879-60757898 | Msa0692310:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | - | chr4_4:60758162-60758181 | None:intergenic | 35.0% | |
| GAACTTGTGAAGGTTATGTT+TGG | + | chr4_4:60758242-60758261 | Msa0692310:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | + | chr4_4:60758257-60758276 | Msa0692310:CDS | 35.0% |
| AAGGTGAGTACAATTGAGAG+CGG | + | chr4_4:60757381-60757400 | Msa0692310:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | + | chr4_4:60757396-60757415 | Msa0692310:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | + | chr4_4:60757418-60757437 | Msa0692310:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | - | chr4_4:60757431-60757450 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | + | chr4_4:60757429-60757448 | Msa0692310:CDS | 40.0% | |
| TTTGCAGCTATAAGCACACT+TGG | + | chr4_4:60757483-60757502 | Msa0692310:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | + | chr4_4:60757500-60757519 | Msa0692310:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | + | chr4_4:60757501-60757520 | Msa0692310:CDS | 40.0% |
| CTAACAAAACGTGTGGCAAA+AGG | - | chr4_4:60757546-60757565 | None:intergenic | 40.0% | |
| TAACGACTATGTACTAACGG+TGG | - | chr4_4:60758084-60758103 | None:intergenic | 40.0% | |
| ! | AAAACTCGGTGACAAATAGC+AGG | - | chr4_4:60758120-60758139 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | + | chr4_4:60758145-60758164 | Msa0692310:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | + | chr4_4:60758156-60758175 | Msa0692310:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | - | chr4_4:60758329-60758348 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | - | chr4_4:60758336-60758355 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | - | chr4_4:60758347-60758366 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | + | chr4_4:60758353-60758372 | Msa0692310:CDS | 40.0% | |
| AAGGTGAGTACAATTGAGAG+CGG | + | chr4_4:60757381-60757400 | Msa0692310:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | + | chr4_4:60757396-60757415 | Msa0692310:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | + | chr4_4:60757418-60757437 | Msa0692310:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | - | chr4_4:60757431-60757450 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | + | chr4_4:60757429-60757448 | Msa0692310:CDS | 40.0% | |
| TTTGCAGCTATAAGCACACT+TGG | + | chr4_4:60757483-60757502 | Msa0692310:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | + | chr4_4:60757500-60757519 | Msa0692310:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | + | chr4_4:60757501-60757520 | Msa0692310:CDS | 40.0% |
| CTAACAAAACGTGTGGCAAA+AGG | - | chr4_4:60757546-60757565 | None:intergenic | 40.0% | |
| TAACGACTATGTACTAACGG+TGG | - | chr4_4:60758084-60758103 | None:intergenic | 40.0% | |
| ! | AAAACTCGGTGACAAATAGC+AGG | - | chr4_4:60758120-60758139 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | + | chr4_4:60758145-60758164 | Msa0692310:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | + | chr4_4:60758156-60758175 | Msa0692310:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | - | chr4_4:60758329-60758348 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | - | chr4_4:60758336-60758355 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | - | chr4_4:60758347-60758366 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | + | chr4_4:60758353-60758372 | Msa0692310:CDS | 40.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | + | chr4_4:60757417-60757436 | Msa0692310:CDS | 45.0% |
| GAAGAGAGGGCTTTCAATAG+TGG | + | chr4_4:60757443-60757462 | Msa0692310:CDS | 45.0% | |
| CTAAAGCTAGTCCTTAGAGG+TGG | + | chr4_4:60758148-60758167 | Msa0692310:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | + | chr4_4:60758318-60758337 | Msa0692310:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | - | chr4_4:60758330-60758349 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | - | chr4_4:60758355-60758374 | None:intergenic | 45.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | + | chr4_4:60757417-60757436 | Msa0692310:CDS | 45.0% |
| GAAGAGAGGGCTTTCAATAG+TGG | + | chr4_4:60757443-60757462 | Msa0692310:CDS | 45.0% | |
| CTAAAGCTAGTCCTTAGAGG+TGG | + | chr4_4:60758148-60758167 | Msa0692310:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | + | chr4_4:60758318-60758337 | Msa0692310:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | - | chr4_4:60758330-60758349 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | - | chr4_4:60758355-60758374 | None:intergenic | 45.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | - | chr4_4:60758387-60758406 | None:intergenic | 50.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | - | chr4_4:60758387-60758406 | None:intergenic | 50.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | - | chr4_4:60758285-60758304 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | + | chr4_4:60758365-60758384 | Msa0692310:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | + | chr4_4:60758377-60758396 | Msa0692310:CDS | 55.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | - | chr4_4:60758285-60758304 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | + | chr4_4:60758365-60758384 | Msa0692310:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | + | chr4_4:60758377-60758396 | Msa0692310:CDS | 55.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | - | chr4_4:60758369-60758388 | None:intergenic | 60.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | - | chr4_4:60758369-60758388 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60757312 | 60758475 | 60757312 | ID=Msa0692310;Name=Msa0692310 |
| chr4_4 | mRNA | 60757312 | 60758475 | 60757312 | ID=Msa0692310-mRNA-1;Parent=Msa0692310;Name=Msa0692310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|211 |
| chr4_4 | exon | 60757312 | 60757601 | 60757312 | ID=Msa0692310-mRNA-1:exon:16686;Parent=Msa0692310-mRNA-1 |
| chr4_4 | exon | 60757693 | 60757816 | 60757693 | ID=Msa0692310-mRNA-1:exon:16687;Parent=Msa0692310-mRNA-1 |
| chr4_4 | exon | 60758254 | 60758475 | 60758254 | ID=Msa0692310-mRNA-1:exon:16688;Parent=Msa0692310-mRNA-1 |
| chr4_4 | CDS | 60757312 | 60757601 | 60757312 | ID=Msa0692310-mRNA-1:cds;Parent=Msa0692310-mRNA-1 |
| chr4_4 | CDS | 60757693 | 60757816 | 60757693 | ID=Msa0692310-mRNA-1:cds;Parent=Msa0692310-mRNA-1 |
| chr4_4 | CDS | 60758254 | 60758475 | 60758254 | ID=Msa0692310-mRNA-1:cds;Parent=Msa0692310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
