Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259300 | ADD71138.1 | 97.664 | 428 | 6 | 1 | 1 | 428 | 25 | 448 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259300 | sp|Q9SJE8|ALMT2_ARATH | 49.490 | 392 | 186 | 3 | 8 | 394 | 12 | 396 | 2.32e-141 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259300 | D4NZK1 | 97.664 | 428 | 6 | 1 | 1 | 428 | 25 | 448 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0259300 | 0.830592 | 2.692561e-55 | -8.615850e-47 |
| Msa0034620 | Msa0259300 | 0.824435 | 8.082599e-54 | -8.615850e-47 |
| Msa0034770 | Msa0259300 | 0.805495 | 1.298868e-49 | -8.615850e-47 |
| Msa0038010 | Msa0259300 | 0.805383 | 1.370774e-49 | -8.615850e-47 |
| Msa0046390 | Msa0259300 | 0.832034 | 1.190033e-55 | -8.615850e-47 |
| Msa0048950 | Msa0259300 | 0.840528 | 8.235158e-58 | -8.615850e-47 |
| Msa0059880 | Msa0259300 | 0.850362 | 1.783101e-60 | -8.615850e-47 |
| Msa0085110 | Msa0259300 | 0.818336 | 2.066893e-52 | -8.615850e-47 |
| Msa0099890 | Msa0259300 | 0.809484 | 1.850035e-50 | -8.615850e-47 |
| Msa0112620 | Msa0259300 | 0.826203 | 3.086546e-54 | -8.615850e-47 |
| Msa0129850 | Msa0259300 | 0.848091 | 7.643527e-60 | -8.615850e-47 |
| Msa0131460 | Msa0259300 | 0.803283 | 3.753298e-49 | -8.615850e-47 |
| Msa0143680 | Msa0259300 | 0.802097 | 6.592842e-49 | -8.615850e-47 |
| Msa0143710 | Msa0259300 | 0.816084 | 6.636176e-52 | -8.615850e-47 |
| Msa0143740 | Msa0259300 | 0.808527 | 2.964929e-50 | -8.615850e-47 |
| Msa0143770 | Msa0259300 | 0.810366 | 1.194814e-50 | -8.615850e-47 |
| Msa0150910 | Msa0259300 | 0.837895 | 3.967338e-57 | -8.615850e-47 |
| Msa0155850 | Msa0259300 | 0.835734 | 1.411981e-56 | -8.615850e-47 |
| Msa0163340 | Msa0259300 | 0.801336 | 9.448288e-49 | -8.615850e-47 |
| Msa0177550 | Msa0259300 | 0.848549 | 5.711209e-60 | -8.615850e-47 |
| Msa0190670 | Msa0259300 | 0.803278 | 3.762092e-49 | -8.615850e-47 |
| Msa0197020 | Msa0259300 | 0.808275 | 3.355502e-50 | -8.615850e-47 |
| Msa0207640 | Msa0259300 | 0.800298 | 1.539185e-48 | -8.615850e-47 |
| Msa0219210 | Msa0259300 | 0.809985 | 1.443144e-50 | -8.615850e-47 |
| Msa0252930 | Msa0259300 | 0.800430 | 1.446294e-48 | -8.615850e-47 |
| Msa0259110 | Msa0259300 | 0.941499 | 3.736242e-101 | -8.615850e-47 |
| Msa0259300 | Msa0274250 | 0.802401 | 5.708472e-49 | -8.615850e-47 |
| Msa0259300 | Msa0274260 | 0.802306 | 5.971748e-49 | -8.615850e-47 |
| Msa0259300 | Msa0276580 | 0.801855 | 7.394877e-49 | -8.615850e-47 |
| Msa0259300 | Msa0298270 | 0.808260 | 3.379148e-50 | -8.615850e-47 |
| Msa0259300 | Msa0316600 | 0.810066 | 1.386232e-50 | -8.615850e-47 |
| Msa0259300 | Msa0342130 | 0.937035 | 6.656038e-98 | -8.615850e-47 |
| Msa0259300 | Msa0342160 | 0.918198 | 2.093703e-86 | -8.615850e-47 |
| Msa0259300 | Msa0349910 | 0.817703 | 2.873614e-52 | -8.615850e-47 |
| Msa0259300 | Msa0366510 | 0.818041 | 2.411269e-52 | -8.615850e-47 |
| Msa0259300 | Msa0374040 | 0.807099 | 5.962590e-50 | -8.615850e-47 |
| Msa0259300 | Msa0397190 | 0.806005 | 1.015029e-49 | -8.615850e-47 |
| Msa0259300 | Msa0401440 | 0.800217 | 1.598595e-48 | -8.615850e-47 |
| Msa0259300 | Msa0414480 | 0.834441 | 2.991209e-56 | -8.615850e-47 |
| Msa0259300 | Msa0464310 | 0.806768 | 7.007548e-50 | -8.615850e-47 |
| Msa0259300 | Msa0491770 | 0.823551 | 1.303154e-53 | -8.615850e-47 |
| Msa0259300 | Msa0515130 | 0.823355 | 1.448584e-53 | -8.615850e-47 |
| Msa0259300 | Msa0515150 | 0.818283 | 2.124781e-52 | -8.615850e-47 |
| Msa0259300 | Msa0535570 | 0.846372 | 2.263456e-59 | -8.615850e-47 |
| Msa0259300 | Msa0538650 | 0.806034 | 1.000765e-49 | -8.615850e-47 |
| Msa0259300 | Msa0548820 | 0.803936 | 2.747842e-49 | -8.615850e-47 |
| Msa0259300 | Msa0579530 | 0.814317 | 1.638881e-51 | -8.615850e-47 |
| Msa0259300 | Msa0591490 | 0.828777 | 7.443317e-55 | -8.615850e-47 |
| Msa0259300 | Msa0597820 | 0.805738 | 1.155038e-49 | -8.615850e-47 |
| Msa0259300 | Msa0605410 | 0.801921 | 7.167302e-49 | -8.615850e-47 |
| Msa0259300 | Msa0605470 | 0.821747 | 3.426308e-53 | -8.615850e-47 |
| Msa0259300 | Msa0624050 | 0.807025 | 6.184106e-50 | -8.615850e-47 |
| Msa0259300 | Msa0631700 | 0.855932 | 4.526565e-62 | -8.615850e-47 |
| Msa0259300 | Msa0643840 | 0.801425 | 9.060738e-49 | -8.615850e-47 |
| Msa0259300 | Msa0645150 | 0.835262 | 1.858794e-56 | -8.615850e-47 |
| Msa0259300 | Msa0646210 | 0.809594 | 1.751494e-50 | -8.615850e-47 |
| Msa0259300 | Msa0650310 | 0.849721 | 2.696235e-60 | -8.615850e-47 |
| Msa0259300 | Msa0650440 | 0.841439 | 4.749356e-58 | -8.615850e-47 |
| Msa0259300 | Msa0670260 | 0.808422 | 3.121826e-50 | -8.615850e-47 |
| Msa0259300 | Msa0670360 | 0.856083 | 4.087099e-62 | -8.615850e-47 |
| Msa0259300 | Msa0671490 | 0.836733 | 7.870277e-57 | -8.615850e-47 |
| Msa0259300 | Msa0671640 | 0.801002 | 1.105877e-48 | -8.615850e-47 |
| Msa0259300 | Msa0676190 | 0.809478 | 1.854916e-50 | -8.615850e-47 |
| Msa0259300 | Msa0678620 | 0.828158 | 1.050502e-54 | -8.615850e-47 |
| Msa0259300 | Msa0692310 | 0.812829 | 3.481039e-51 | -8.615850e-47 |
| Msa0259300 | Msa0711240 | 0.817812 | 2.716199e-52 | -8.615850e-47 |
| Msa0259300 | Msa0727480 | 0.808101 | 3.654276e-50 | -8.615850e-47 |
| Msa0259300 | Msa0735340 | 0.820606 | 6.275246e-53 | -8.615850e-47 |
| Msa0259300 | Msa0738410 | 0.803918 | 2.772056e-49 | -8.615850e-47 |
| Msa0259300 | Msa0768670 | 0.803523 | 3.347828e-49 | -8.615850e-47 |
| Msa0259300 | Msa0777210 | 0.816576 | 5.150399e-52 | -8.615850e-47 |
| Msa0259300 | Msa0787860 | 0.804584 | 2.013674e-49 | -8.615850e-47 |
| Msa0259300 | Msa0792330 | 0.812497 | 4.115575e-51 | -8.615850e-47 |
| Msa0259300 | Msa0798240 | 0.801301 | 9.603042e-49 | -8.615850e-47 |
| Msa0259300 | Msa0799110 | 0.801232 | 9.920432e-49 | -8.615850e-47 |
| Msa0259300 | Msa0814350 | 0.806340 | 8.627071e-50 | -8.615850e-47 |
| Msa0259300 | Msa0824850 | 0.801176 | 1.018582e-48 | -8.615850e-47 |
| Msa0259300 | Msa0824860 | 0.820392 | 7.026678e-53 | -8.615850e-47 |
| Msa0259300 | Msa0854840 | 0.803911 | 2.781200e-49 | -8.615850e-47 |
| Msa0259300 | Msa0863840 | 0.823247 | 1.534615e-53 | -8.615850e-47 |
| Msa0259300 | Msa0864160 | 0.811749 | 5.991020e-51 | -8.615850e-47 |
| Msa0259300 | Msa0871420 | 0.802423 | 5.649901e-49 | -8.615850e-47 |
| Msa0259300 | Msa0883640 | 0.827495 | 1.515823e-54 | -8.615850e-47 |
| Msa0259300 | Msa0893840 | 0.800541 | 1.372897e-48 | -8.615850e-47 |
| Msa0259300 | Msa0902340 | 0.832456 | 9.354792e-56 | -8.615850e-47 |
| Msa0259300 | Msa0910830 | 0.836502 | 9.012154e-57 | -8.615850e-47 |
| Msa0259300 | Msa0936630 | 0.806618 | 7.537362e-50 | -8.615850e-47 |
| Msa0259300 | Msa0941120 | 0.824626 | 7.287834e-54 | -8.615850e-47 |
| Msa0259300 | Msa0960090 | 0.826683 | 2.371453e-54 | -8.615850e-47 |
| Msa0259300 | Msa0985700 | 0.830532 | 2.784583e-55 | -8.615850e-47 |
| Msa0259300 | Msa1021620 | 0.805304 | 1.424101e-49 | -8.615850e-47 |
| Msa0259300 | Msa1022510 | 0.805185 | 1.508158e-49 | -8.615850e-47 |
| Msa0259300 | Msa1024350 | 0.808886 | 2.483905e-50 | -8.615850e-47 |
| Msa0259300 | Msa1026050 | 0.821531 | 3.842178e-53 | -8.615850e-47 |
| Msa0259300 | Msa1041630 | 0.805674 | 1.191230e-49 | -8.615850e-47 |
| Msa0259300 | Msa1061670 | 0.848429 | 6.165638e-60 | -8.615850e-47 |
| Msa0259300 | Msa1064940 | 0.807556 | 4.770382e-50 | -8.615850e-47 |
| Msa0259300 | Msa1076830 | 0.814711 | 1.340222e-51 | -8.615850e-47 |
| Msa0259300 | Msa1081610 | 0.854592 | 1.110835e-61 | -8.615850e-47 |
| Msa0259300 | Msa1087380 | 0.817020 | 4.094600e-52 | -8.615850e-47 |
| Msa0259300 | Msa1098100 | 0.816003 | 6.918573e-52 | -8.615850e-47 |
| Msa0259300 | Msa1106680 | 0.804817 | 1.800646e-49 | -8.615850e-47 |
| Msa0259300 | Msa1106960 | 0.849584 | 2.943356e-60 | -8.615850e-47 |
| Msa0259300 | Msa1109880 | 0.823863 | 1.101557e-53 | -8.615850e-47 |
| Msa0259300 | Msa1109890 | 0.841692 | 4.072682e-58 | -8.615850e-47 |
| Msa0259300 | Msa1138110 | 0.801941 | 7.100889e-49 | -8.615850e-47 |
| Msa0259300 | Msa1166530 | 0.812657 | 3.797521e-51 | -8.615850e-47 |
| Msa0259300 | Msa1252630 | 0.800435 | 1.443482e-48 | -8.615850e-47 |
| Msa0259300 | Msa1286420 | 0.823876 | 1.093726e-53 | -8.615850e-47 |
| Msa0259300 | Msa1300610 | 0.801726 | 7.858727e-49 | -8.615850e-47 |
| Msa0259300 | Msa1311070 | 0.817477 | 3.231034e-52 | -8.615850e-47 |
| Msa0259300 | Msa1316960 | 0.802614 | 5.159864e-49 | -8.615850e-47 |
| Msa0259300 | Msa1323030 | 0.807414 | 5.114988e-50 | -8.615850e-47 |
| Msa0259300 | Msa1341030 | 0.835971 | 1.229569e-56 | -8.615850e-47 |
| Msa0259300 | Msa1355340 | 0.807581 | 4.713913e-50 | -8.615850e-47 |
| Msa0259300 | Msa1357750 | 0.818738 | 1.676009e-52 | -8.615850e-47 |
| Msa0259300 | Msa1373560 | 0.814767 | 1.303090e-51 | -8.615850e-47 |
| Msa0259300 | Msa1376070 | 0.821030 | 5.013735e-53 | -8.615850e-47 |
| Msa0259300 | Msa1377520 | 0.816112 | 6.540359e-52 | -8.615850e-47 |
| Msa0259300 | Msa1378400 | 0.808240 | 3.412761e-50 | -8.615850e-47 |
| Msa0259300 | Msa1395150 | 0.843101 | 1.723490e-58 | -8.615850e-47 |
| Msa0259300 | Msa1411550 | 0.815136 | 1.078809e-51 | -8.615850e-47 |
| Msa0259300 | Msa1420020 | 0.820157 | 7.954358e-53 | -8.615850e-47 |
| Msa0259300 | Msa1421130 | 0.827047 | 1.940494e-54 | -8.615850e-47 |
| Msa0259300 | Msa1456600 | 0.821419 | 4.078709e-53 | -8.615850e-47 |
| Msa0259300 | Msa1459610 | 0.812559 | 3.988094e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259300 | MtrunA17_Chr2g0321971 | 95.794 | 428 | 14 | 1 | 1 | 428 | 29 | 452 | 0.0 | 846 |
| Msa0259300 | MtrunA17_Chr7g0267471 | 50.114 | 437 | 206 | 4 | 1 | 432 | 34 | 463 | 9.98e-150 | 434 |
| Msa0259300 | MtrunA17_Chr4g0025591 | 49.771 | 436 | 201 | 6 | 8 | 433 | 40 | 467 | 9.28e-146 | 424 |
| Msa0259300 | MtrunA17_Chr2g0321961 | 44.780 | 431 | 222 | 5 | 1 | 428 | 29 | 446 | 2.60e-134 | 394 |
| Msa0259300 | MtrunA17_Chr1g0188881 | 41.050 | 419 | 220 | 4 | 9 | 409 | 52 | 461 | 5.87e-111 | 335 |
| Msa0259300 | MtrunA17_Chr1g0188871 | 41.860 | 430 | 230 | 6 | 9 | 426 | 46 | 467 | 2.82e-110 | 333 |
| Msa0259300 | MtrunA17_Chr1g0212201 | 40.432 | 324 | 189 | 2 | 3 | 325 | 35 | 355 | 1.69e-81 | 261 |
| Msa0259300 | MtrunA17_Chr7g0259731 | 36.829 | 391 | 233 | 7 | 14 | 399 | 61 | 442 | 7.40e-78 | 248 |
| Msa0259300 | MtrunA17_Chr1g0212251 | 39.873 | 316 | 187 | 1 | 10 | 325 | 38 | 350 | 2.66e-77 | 249 |
| Msa0259300 | MtrunA17_Chr4g0054741 | 36.253 | 411 | 243 | 6 | 9 | 413 | 49 | 446 | 9.98e-76 | 246 |
| Msa0259300 | MtrunA17_Chr1g0212291 | 41.956 | 317 | 180 | 2 | 9 | 324 | 38 | 351 | 5.16e-72 | 236 |
| Msa0259300 | MtrunA17_Chr6g0484691 | 38.272 | 324 | 190 | 5 | 9 | 325 | 84 | 404 | 6.71e-61 | 208 |
| Msa0259300 | MtrunA17_Chr1g0210101 | 36.254 | 331 | 190 | 7 | 6 | 325 | 110 | 430 | 1.39e-59 | 204 |
| Msa0259300 | MtrunA17_Chr8g0390931 | 35.737 | 319 | 193 | 6 | 9 | 325 | 59 | 367 | 2.38e-58 | 201 |
| Msa0259300 | MtrunA17_Chr8g0390921 | 34.663 | 326 | 197 | 7 | 9 | 325 | 60 | 378 | 1.04e-54 | 191 |
| Msa0259300 | MtrunA17_Chr5g0400471 | 37.631 | 287 | 150 | 5 | 65 | 324 | 3 | 287 | 6.61e-54 | 186 |
| Msa0259300 | MtrunA17_Chr8g0390901 | 34.686 | 271 | 162 | 6 | 64 | 325 | 10 | 274 | 4.08e-44 | 160 |
| Msa0259300 | MtrunA17_Chr4g0054771 | 34.025 | 241 | 144 | 4 | 115 | 351 | 4 | 233 | 1.26e-43 | 157 |
| Msa0259300 | MtrunA17_Chr5g0400481 | 58.621 | 58 | 24 | 0 | 10 | 67 | 58 | 115 | 1.81e-16 | 75.5 |
| Msa0259300 | MtrunA17_Chr4g0054761 | 58.462 | 65 | 27 | 0 | 9 | 73 | 49 | 113 | 1.01e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0259300 | AT1G08440.1 | 49.490 | 392 | 186 | 3 | 8 | 394 | 12 | 396 | 2.36e-142 | 416 |
| Msa0259300 | AT2G27240.2 | 49.497 | 398 | 187 | 4 | 8 | 399 | 12 | 401 | 7.00e-142 | 414 |
| Msa0259300 | AT2G27240.1 | 47.381 | 420 | 189 | 4 | 8 | 399 | 12 | 427 | 8.87e-140 | 410 |
| Msa0259300 | AT1G08430.1 | 46.867 | 399 | 195 | 5 | 10 | 399 | 14 | 404 | 2.01e-139 | 409 |
| Msa0259300 | AT3G11680.2 | 48.762 | 404 | 195 | 6 | 7 | 406 | 36 | 431 | 2.95e-125 | 372 |
| Msa0259300 | AT3G11680.1 | 48.762 | 404 | 195 | 6 | 7 | 406 | 34 | 429 | 3.80e-125 | 372 |
| Msa0259300 | AT4G00910.1 | 38.337 | 433 | 239 | 4 | 4 | 412 | 53 | 481 | 3.12e-103 | 316 |
| Msa0259300 | AT4G17970.1 | 40.720 | 361 | 198 | 6 | 6 | 360 | 36 | 386 | 1.60e-86 | 275 |
| Msa0259300 | AT5G46600.1 | 38.462 | 364 | 214 | 4 | 3 | 360 | 36 | 395 | 3.02e-79 | 255 |
| Msa0259300 | AT5G46610.1 | 39.319 | 323 | 192 | 2 | 3 | 324 | 35 | 354 | 1.01e-78 | 254 |
| Msa0259300 | AT5G46610.2 | 35.913 | 323 | 179 | 3 | 3 | 324 | 35 | 330 | 3.43e-65 | 218 |
| Msa0259300 | AT5G46610.3 | 34.385 | 317 | 157 | 2 | 9 | 324 | 41 | 307 | 2.67e-60 | 204 |
| Msa0259300 | AT3G18440.1 | 33.151 | 365 | 225 | 9 | 9 | 359 | 79 | 438 | 3.38e-59 | 204 |
| Msa0259300 | AT1G18420.1 | 34.036 | 332 | 206 | 5 | 2 | 325 | 76 | 402 | 4.35e-59 | 203 |
| Msa0259300 | AT1G18420.2 | 34.259 | 324 | 200 | 5 | 10 | 325 | 1 | 319 | 1.10e-58 | 200 |
| Msa0259300 | AT1G68600.1 | 36.585 | 328 | 194 | 7 | 6 | 325 | 45 | 366 | 1.35e-57 | 198 |
| Msa0259300 | AT1G25480.1 | 36.747 | 332 | 196 | 7 | 2 | 325 | 52 | 377 | 2.21e-57 | 198 |
| Msa0259300 | AT2G17470.1 | 35.671 | 328 | 197 | 7 | 6 | 325 | 28 | 349 | 4.14e-56 | 194 |
| Msa0259300 | AT2G17470.2 | 35.671 | 328 | 197 | 7 | 6 | 325 | 50 | 371 | 7.20e-56 | 194 |
| Msa0259300 | AT4G17585.1 | 56.604 | 53 | 23 | 0 | 6 | 58 | 36 | 88 | 1.40e-13 | 68.6 |
Find 72 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAATGAATGACCCTTCT+AGG | 0.191366 | 2_2:-56279652 | None:intergenic |
| ATAATTGAACCTATACTTCT+TGG | 0.239685 | 2_2:+56280433 | Msa0259300:CDS |
| GATATTGTTGCCAAGGATAT+TGG | 0.241933 | 2_2:-56281465 | None:intergenic |
| AGTTGTTAAGGAAGCCATTA+AGG | 0.268610 | 2_2:-56281534 | None:intergenic |
| TATCGGATTGATGCCCTTAA+TGG | 0.282687 | 2_2:+56281520 | Msa0259300:CDS |
| TGTACAAAATTGACACATAA+TGG | 0.288079 | 2_2:+56282076 | Msa0259300:CDS |
| AAACCTCTCTATGATAGTTT+TGG | 0.300107 | 2_2:+56279721 | Msa0259300:CDS |
| TTGGCTGGTGTTCTTGGACT+TGG | 0.319754 | 2_2:+56280370 | Msa0259300:CDS |
| ATGAAGGCTAGATATGATTA+TGG | 0.325434 | 2_2:+56280616 | Msa0259300:CDS |
| GATAAGCACATTGCCTTGAT+AGG | 0.359354 | 2_2:-56281501 | None:intergenic |
| CTTGGAAAAGGTTTAAATAG+AGG | 0.383071 | 2_2:+56280334 | Msa0259300:CDS |
| TCATATCTAGCCTTCATTAG+AGG | 0.384146 | 2_2:-56280610 | None:intergenic |
| TTCTTGTGCCCTGTTTGGGC+TGG | 0.387615 | 2_2:+56280772 | Msa0259300:CDS |
| TATCAAGGCAATGTGCTTAT+CGG | 0.393258 | 2_2:+56281503 | Msa0259300:CDS |
| GATCATGGACCTTAGGTTTG+TGG | 0.393496 | 2_2:-56281813 | None:intergenic |
| TGGCAACAATATCAAAAGAT+TGG | 0.402570 | 2_2:+56281475 | Msa0259300:CDS |
| GTACCTTAGTGAAGTTGTTA+AGG | 0.410620 | 2_2:-56281546 | None:intergenic |
| TGGGAAAAGAAGATCCTAGA+AGG | 0.411010 | 2_2:+56279638 | Msa0259300:CDS |
| TAATTGACACTGCACAAGAT+AGG | 0.418272 | 2_2:+56280701 | Msa0259300:CDS |
| CTACTATCACTGCATGTTTG+TGG | 0.427671 | 2_2:-56282019 | None:intergenic |
| AAACTTGCCTACAGAGAATT+CGG | 0.429274 | 2_2:-56279785 | None:intergenic |
| TTGTGCCCTGTTTGGGCTGG+TGG | 0.433334 | 2_2:+56280775 | Msa0259300:CDS |
| ATTATGATTCCAAGAAGTAT+AGG | 0.433596 | 2_2:-56280442 | None:intergenic |
| AGATCACCACCAGCCCAAAC+AGG | 0.433992 | 2_2:-56280781 | None:intergenic |
| GTACAAAATTGACACATAAT+GGG | 0.436412 | 2_2:+56282077 | Msa0259300:CDS |
| GGCTAGATATGATTATGGTT+TGG | 0.440433 | 2_2:+56280621 | Msa0259300:CDS |
| GAATCTGAAACGACCATGGC+AGG | 0.446207 | 2_2:-56281443 | None:intergenic |
| GATGTTGCAGCTGAAAGAAT+TGG | 0.448481 | 2_2:+56279618 | Msa0259300:CDS |
| GTTGTTAAGGAAGCCATTAA+GGG | 0.460812 | 2_2:-56281533 | None:intergenic |
| AGTAGCATTTGCTATTACAT+TGG | 0.462751 | 2_2:+56279678 | Msa0259300:CDS |
| GTTTCAGATTCCAATATCCT+TGG | 0.467661 | 2_2:+56281455 | Msa0259300:CDS |
| ATTAAGATGAGCATAGAAAC+AGG | 0.468944 | 2_2:+56281701 | Msa0259300:CDS |
| AATGAAGCCACGGTTACAAC+AGG | 0.480765 | 2_2:-56281878 | None:intergenic |
| TTTGAATTATTTCAGCTGCA+GGG | 0.486846 | 2_2:+56280566 | Msa0259300:intron |
| TCGATTTATACCTCTAATGA+AGG | 0.491939 | 2_2:+56280600 | Msa0259300:CDS |
| CATGATCAAAACAAAATTGT+GGG | 0.502020 | 2_2:+56281829 | Msa0259300:CDS |
| TCTATGCTCATCTTAATGCA+TGG | 0.508658 | 2_2:-56281695 | None:intergenic |
| GTGCAGTGTCAATTATCTCA+TGG | 0.511026 | 2_2:-56280693 | None:intergenic |
| GCAGGAGCAACACTTGGAAA+AGG | 0.511844 | 2_2:+56280322 | Msa0259300:intron |
| TGGACTTGGATCTTATTACA+TGG | 0.514673 | 2_2:+56280384 | Msa0259300:CDS |
| TGGTGGATTAATTTCTGTGT+TGG | 0.515117 | 2_2:+56280741 | Msa0259300:CDS |
| GTAACAACAATTCTAGTTGG+TGG | 0.515822 | 2_2:+56280724 | Msa0259300:CDS |
| CTTCCTTAACAACTTCACTA+AGG | 0.516652 | 2_2:+56281543 | Msa0259300:CDS |
| ATGTTGCAGCTGAAAGAATT+GGG | 0.527158 | 2_2:+56279619 | Msa0259300:CDS |
| TGAGTTTCTGCTGAGGTTGG+TGG | 0.528304 | 2_2:-56281767 | None:intergenic |
| AAAAGATTGGAAACCTATCA+AGG | 0.530845 | 2_2:+56281488 | Msa0259300:CDS |
| AGGGTAACAACAATTCTAGT+TGG | 0.536338 | 2_2:+56280721 | Msa0259300:CDS |
| CCATGATCAAAACAAAATTG+TGG | 0.536457 | 2_2:+56281828 | Msa0259300:CDS |
| AATTGACACTGCACAAGATA+GGG | 0.540293 | 2_2:+56280702 | Msa0259300:CDS |
| GGAAGACACAAATTTGTTTG+AGG | 0.543623 | 2_2:+56281850 | Msa0259300:CDS |
| AAAACAAGTCGAAGATAACT+TGG | 0.544545 | 2_2:+56281046 | Msa0259300:CDS |
| CTTAGCAAAATTTAAGAACA+AGG | 0.557015 | 2_2:+56281961 | Msa0259300:CDS |
| TTGAATTATTTCAGCTGCAG+GGG | 0.563412 | 2_2:+56280567 | Msa0259300:intron |
| GTTGTCTCCGAATTCTCTGT+AGG | 0.565117 | 2_2:+56279778 | Msa0259300:CDS |
| GCACATGCAGGAGCAACACT+TGG | 0.568214 | 2_2:+56280316 | Msa0259300:intron |
| ATGTGAGTTTCTGCTGAGGT+TGG | 0.568552 | 2_2:-56281770 | None:intergenic |
| GCAAGGTGGGAACCCTGCCA+TGG | 0.570019 | 2_2:+56281430 | Msa0259300:CDS |
| TCAAATAAATCATTTATGCA+AGG | 0.574471 | 2_2:+56281002 | Msa0259300:CDS |
| ATGGTTCATACAATTTCAAG+AGG | 0.574977 | 2_2:+56280403 | Msa0259300:CDS |
| AGATTTATGCCACAAACCTA+AGG | 0.581612 | 2_2:+56281804 | Msa0259300:CDS |
| ATCAAGCAATAATGAAGCCA+CGG | 0.596047 | 2_2:-56281888 | None:intergenic |
| TTAATTATAATAACATGTTG+TGG | 0.607316 | 2_2:-56282046 | None:intergenic |
| GGGAAAAGAAGATCCTAGAA+GGG | 0.628854 | 2_2:+56279639 | Msa0259300:CDS |
| GATGAGCATAGAAACAGGAA+AGG | 0.631774 | 2_2:+56281706 | Msa0259300:CDS |
| CAAACATGCAGTGATAGTAG+TGG | 0.633845 | 2_2:+56282022 | Msa0259300:CDS |
| GAACCAAAACTATCATAGAG+AGG | 0.635110 | 2_2:-56279724 | None:intergenic |
| TGCAATGTGAGTTTCTGCTG+AGG | 0.637883 | 2_2:-56281774 | None:intergenic |
| TGATTCTGCAAGTTTCTCAG+TGG | 0.649200 | 2_2:-56281921 | None:intergenic |
| ATTGGAATCTGAAACGACCA+TGG | 0.657737 | 2_2:-56281447 | None:intergenic |
| AATCTGAAACGACCATGGCA+GGG | 0.657967 | 2_2:-56281442 | None:intergenic |
| GGTTGTTCCTGTTGTAACCG+TGG | 0.667584 | 2_2:+56281871 | Msa0259300:CDS |
| GATCACCACCAGCCCAAACA+GGG | 0.679414 | 2_2:-56280780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTACATAGAAAAAA+TGG | + | chr2_2:56279954-56279973 | Msa0259300:intron | 10.0% |
| !!! | AATTTACAATAACATAATTT+TGG | - | chr2_2:56281086-56281105 | None:intergenic | 10.0% |
| !!! | AATTTTGTAAATTGTGATTA+TGG | + | chr2_2:56280869-56280888 | Msa0259300:intron | 15.0% |
| !! | TTAATTATAATAACATGTTG+TGG | - | chr2_2:56282049-56282068 | None:intergenic | 15.0% |
| !!! | TTATTCTATGTTTCTACAAT+CGG | - | chr2_2:56280176-56280195 | None:intergenic | 20.0% |
| !!! | GAATAAATAGTATTTTGTAG+AGG | + | chr2_2:56280190-56280209 | Msa0259300:intron | 20.0% |
| !!! | TATTTGATAATTTCACTAGT+AGG | + | chr2_2:56280500-56280519 | Msa0259300:intron | 20.0% |
| !! | TCAAAAAACATTGAAAAACT+TGG | + | chr2_2:56280817-56280836 | Msa0259300:CDS | 20.0% |
| !! | TGTTGAAATTGATTAATTCT+TGG | + | chr2_2:56280928-56280947 | Msa0259300:intron | 20.0% |
| !! | ATTAATTCTTGGAAAATTGT+AGG | + | chr2_2:56280939-56280958 | Msa0259300:intron | 20.0% |
| !! | TCAAATAAATCATTTATGCA+AGG | + | chr2_2:56281002-56281021 | Msa0259300:CDS | 20.0% |
| !! | ATATATTGAGAAATATTCCA+TGG | - | chr2_2:56281135-56281154 | None:intergenic | 20.0% |
| !!! | ATTAGTTTAATACCTTTTGT+AGG | + | chr2_2:56281399-56281418 | Msa0259300:intron | 20.0% |
| !! | ATCAATATCAATCCAAAAAA+CGG | + | chr2_2:56281742-56281761 | Msa0259300:CDS | 20.0% |
| !!! | GTTTTGTTTGTTGTTTTCTT+TGG | + | chr2_2:56279804-56279823 | Msa0259300:intron | 25.0% |
| !!! | GTTTTAATCATGCATGTTTT+TGG | + | chr2_2:56279826-56279845 | Msa0259300:intron | 25.0% |
| ! | TAGTAGACACTAAACTTAAA+TGG | - | chr2_2:56279857-56279876 | None:intergenic | 25.0% |
| !!! | TTTTTCTCTAGTCTTAACTT+TGG | + | chr2_2:56279879-56279898 | Msa0259300:intron | 25.0% |
| ! | ATCTTAATTCCAAAAATGCA+TGG | + | chr2_2:56280051-56280070 | Msa0259300:intron | 25.0% |
| ! | ATAATTGAACCTATACTTCT+TGG | + | chr2_2:56280433-56280452 | Msa0259300:CDS | 25.0% |
| !! | ATTATGATTCCAAGAAGTAT+AGG | - | chr2_2:56280445-56280464 | None:intergenic | 25.0% |
| !! | GTTTATCTTGACATTTTGTT+TGG | + | chr2_2:56280648-56280667 | Msa0259300:CDS | 25.0% |
| ! | TCTACTACGATTTACATATA+CGG | + | chr2_2:56281319-56281338 | Msa0259300:intron | 25.0% |
| !! | AAGTTTAGTAGAGTATTTCT+TGG | + | chr2_2:56281594-56281613 | Msa0259300:intron | 25.0% |
| !!! | ACTTTTTTTATAGACACCAA+AGG | + | chr2_2:56281649-56281668 | Msa0259300:intron | 25.0% |
| !!! | ATTTTGCTTTTGATTTCCTT+TGG | - | chr2_2:56281668-56281687 | None:intergenic | 25.0% |
| ! | CATGATCAAAACAAAATTGT+GGG | + | chr2_2:56281829-56281848 | Msa0259300:CDS | 25.0% |
| !! | CTTGTTCTTAAATTTTGCTA+AGG | - | chr2_2:56281963-56281982 | None:intergenic | 25.0% |
| ! | CTTAGCAAAATTTAAGAACA+AGG | + | chr2_2:56281961-56281980 | Msa0259300:CDS | 25.0% |
| !! | TTATGTGTCAATTTTGTACA+AGG | - | chr2_2:56282076-56282095 | None:intergenic | 25.0% |
| ! | TGTACAAAATTGACACATAA+TGG | + | chr2_2:56282076-56282095 | Msa0259300:CDS | 25.0% |
| ! | GTACAAAATTGACACATAAT+GGG | + | chr2_2:56282077-56282096 | Msa0259300:CDS | 25.0% |
| !! | AGTAGCATTTGCTATTACAT+TGG | + | chr2_2:56279678-56279697 | Msa0259300:CDS | 30.0% |
| ! | AAACCTCTCTATGATAGTTT+TGG | + | chr2_2:56279721-56279740 | Msa0259300:CDS | 30.0% |
| !! | CATATTATTTTGCCACTTGT+TGG | + | chr2_2:56279914-56279933 | Msa0259300:intron | 30.0% |
| TTAATTCCAAAAATGCATGG+TGG | + | chr2_2:56280054-56280073 | Msa0259300:intron | 30.0% | |
| !!! | ATCGGTCATAGATTTTTTTG+TGG | - | chr2_2:56280158-56280177 | None:intergenic | 30.0% |
| !! | ATGCGAACTTGAATTTTAAC+TGG | + | chr2_2:56280270-56280289 | Msa0259300:intron | 30.0% |
| CTTGGAAAAGGTTTAAATAG+AGG | + | chr2_2:56280334-56280353 | Msa0259300:CDS | 30.0% | |
| ! | TAGAGGTTTAGCAACATTTT+TGG | + | chr2_2:56280351-56280370 | Msa0259300:CDS | 30.0% |
| ATGGTTCATACAATTTCAAG+AGG | + | chr2_2:56280403-56280422 | Msa0259300:CDS | 30.0% | |
| ! | TTTTGAATTATTTCAGCTGC+AGG | + | chr2_2:56280565-56280584 | Msa0259300:intron | 30.0% |
| TTTGAATTATTTCAGCTGCA+GGG | + | chr2_2:56280566-56280585 | Msa0259300:intron | 30.0% | |
| TCGATTTATACCTCTAATGA+AGG | + | chr2_2:56280600-56280619 | Msa0259300:CDS | 30.0% | |
| ATGAAGGCTAGATATGATTA+TGG | + | chr2_2:56280616-56280635 | Msa0259300:CDS | 30.0% | |
| ! | AAACTTGGCAACTTTTTAGA+AGG | + | chr2_2:56280832-56280851 | Msa0259300:CDS | 30.0% |
| ! | TCTTGGAAAATTGTAGGTTT+TGG | + | chr2_2:56280945-56280964 | Msa0259300:intron | 30.0% |
| !!! | GGTTTTGGAGATGAATATTT+TGG | + | chr2_2:56280960-56280979 | Msa0259300:intron | 30.0% |
| AAAACAAGTCGAAGATAACT+TGG | + | chr2_2:56281046-56281065 | Msa0259300:CDS | 30.0% | |
| TCATCAAATCAAAATGTCCA+TGG | + | chr2_2:56281115-56281134 | Msa0259300:intron | 30.0% | |
| TCAAATATGTTGAAAAGTCG+TGG | - | chr2_2:56281291-56281310 | None:intergenic | 30.0% | |
| CTACTACGATTTACATATAC+GGG | + | chr2_2:56281320-56281339 | Msa0259300:intron | 30.0% | |
| TTGCAAAATTGACCTACAAA+AGG | - | chr2_2:56281414-56281433 | None:intergenic | 30.0% | |
| ! | TTTTGTAGGTCAATTTTGCA+AGG | + | chr2_2:56281413-56281432 | Msa0259300:intron | 30.0% |
| ! | ATCTTTTGATATTGTTGCCA+AGG | - | chr2_2:56281475-56281494 | None:intergenic | 30.0% |
| TGGCAACAATATCAAAAGAT+TGG | + | chr2_2:56281475-56281494 | Msa0259300:CDS | 30.0% | |
| AAAAGATTGGAAACCTATCA+AGG | + | chr2_2:56281488-56281507 | Msa0259300:CDS | 30.0% | |
| ATTAAGATGAGCATAGAAAC+AGG | + | chr2_2:56281701-56281720 | Msa0259300:CDS | 30.0% | |
| !!! | CCACAATTTTGTTTTGATCA+TGG | - | chr2_2:56281831-56281850 | None:intergenic | 30.0% |
| CCATGATCAAAACAAAATTG+TGG | + | chr2_2:56281828-56281847 | Msa0259300:CDS | 30.0% | |
| ! | GTTCTTAAATTTTGCTAAGG+TGG | - | chr2_2:56281960-56281979 | None:intergenic | 30.0% |
| ATGTTGCAGCTGAAAGAATT+GGG | + | chr2_2:56279619-56279638 | Msa0259300:CDS | 35.0% | |
| AAAGAATGAATGACCCTTCT+AGG | - | chr2_2:56279655-56279674 | None:intergenic | 35.0% | |
| GAACCAAAACTATCATAGAG+AGG | - | chr2_2:56279727-56279746 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTCTTCTGCAATGT+GGG | + | chr2_2:56279738-56279757 | Msa0259300:CDS | 35.0% |
| AAACTTGCCTACAGAGAATT+CGG | - | chr2_2:56279788-56279807 | None:intergenic | 35.0% | |
| TATGATCTTGATCCAACAAG+TGG | - | chr2_2:56279929-56279948 | None:intergenic | 35.0% | |
| CTTGTTGGATCAAGATCATA+CGG | + | chr2_2:56279929-56279948 | Msa0259300:intron | 35.0% | |
| TTGTGGACATACGTAAATGT+TGG | - | chr2_2:56280141-56280160 | None:intergenic | 35.0% | |
| !!! | CGAACTTGAATTTTAACTGG+TGG | + | chr2_2:56280273-56280292 | Msa0259300:intron | 35.0% |
| TTTGATTATGTTGCACATGC+AGG | + | chr2_2:56280304-56280323 | Msa0259300:intron | 35.0% | |
| TGGACTTGGATCTTATTACA+TGG | + | chr2_2:56280384-56280403 | Msa0259300:CDS | 35.0% | |
| TTGAATTATTTCAGCTGCAG+GGG | + | chr2_2:56280567-56280586 | Msa0259300:intron | 35.0% | |
| ! | TCATATCTAGCCTTCATTAG+AGG | - | chr2_2:56280613-56280632 | None:intergenic | 35.0% |
| GGCTAGATATGATTATGGTT+TGG | + | chr2_2:56280621-56280640 | Msa0259300:CDS | 35.0% | |
| TAATTGACACTGCACAAGAT+AGG | + | chr2_2:56280701-56280720 | Msa0259300:CDS | 35.0% | |
| AATTGACACTGCACAAGATA+GGG | + | chr2_2:56280702-56280721 | Msa0259300:CDS | 35.0% | |
| AGGGTAACAACAATTCTAGT+TGG | + | chr2_2:56280721-56280740 | Msa0259300:CDS | 35.0% | |
| ! | GTAACAACAATTCTAGTTGG+TGG | + | chr2_2:56280724-56280743 | Msa0259300:CDS | 35.0% |
| !! | TGGTGGATTAATTTCTGTGT+TGG | + | chr2_2:56280741-56280760 | Msa0259300:CDS | 35.0% |
| !!! | TATTTTGGAACACTAGATGC+TGG | + | chr2_2:56280975-56280994 | Msa0259300:CDS | 35.0% |
| AGACATGTCAATGTTCAACT+AGG | - | chr2_2:56281189-56281208 | None:intergenic | 35.0% | |
| ! | TGTCTCCAATTTAGTTCATG+TGG | + | chr2_2:56281204-56281223 | Msa0259300:intron | 35.0% |
| ! | GTCTCCAATTTAGTTCATGT+GGG | + | chr2_2:56281205-56281224 | Msa0259300:intron | 35.0% |
| ! | TCTCCAATTTAGTTCATGTG+GGG | + | chr2_2:56281206-56281225 | Msa0259300:intron | 35.0% |
| TAAGTCAGAGTAGACAAAGA+CGG | - | chr2_2:56281376-56281395 | None:intergenic | 35.0% | |
| GTTTCAGATTCCAATATCCT+TGG | + | chr2_2:56281455-56281474 | Msa0259300:CDS | 35.0% | |
| GATATTGTTGCCAAGGATAT+TGG | - | chr2_2:56281468-56281487 | None:intergenic | 35.0% | |
| TATCAAGGCAATGTGCTTAT+CGG | + | chr2_2:56281503-56281522 | Msa0259300:CDS | 35.0% | |
| GTTGTTAAGGAAGCCATTAA+GGG | - | chr2_2:56281536-56281555 | None:intergenic | 35.0% | |
| AGTTGTTAAGGAAGCCATTA+AGG | - | chr2_2:56281537-56281556 | None:intergenic | 35.0% | |
| CTTCCTTAACAACTTCACTA+AGG | + | chr2_2:56281543-56281562 | Msa0259300:CDS | 35.0% | |
| GTACCTTAGTGAAGTTGTTA+AGG | - | chr2_2:56281549-56281568 | None:intergenic | 35.0% | |
| TCTATGCTCATCTTAATGCA+TGG | - | chr2_2:56281698-56281717 | None:intergenic | 35.0% | |
| AGATTTATGCCACAAACCTA+AGG | + | chr2_2:56281804-56281823 | Msa0259300:CDS | 35.0% | |
| !!! | TTGTTTTGATCATGGACCTT+AGG | - | chr2_2:56281823-56281842 | None:intergenic | 35.0% |
| ! | GGAAGACACAAATTTGTTTG+AGG | + | chr2_2:56281850-56281869 | Msa0259300:CDS | 35.0% |
| ATCAAGCAATAATGAAGCCA+CGG | - | chr2_2:56281891-56281910 | None:intergenic | 35.0% | |
| GATGTTGCAGCTGAAAGAAT+TGG | + | chr2_2:56279618-56279637 | Msa0259300:CDS | 40.0% | |
| TGGGAAAAGAAGATCCTAGA+AGG | + | chr2_2:56279638-56279657 | Msa0259300:CDS | 40.0% | |
| GGGAAAAGAAGATCCTAGAA+GGG | + | chr2_2:56279639-56279658 | Msa0259300:CDS | 40.0% | |
| !!! | GTTTTGGTTCTTCTGCAATG+TGG | + | chr2_2:56279737-56279756 | Msa0259300:CDS | 40.0% |
| TCACGCATTCAACACATTGA+TGG | - | chr2_2:56280003-56280022 | None:intergenic | 40.0% | |
| ! | TAAGTGCCACCATGCATTTT+TGG | - | chr2_2:56280063-56280082 | None:intergenic | 40.0% |
| !!! | GGTTTAGCAACATTTTTGGC+TGG | + | chr2_2:56280355-56280374 | Msa0259300:CDS | 40.0% |
| !!! | ACATTTTTGGCTGGTGTTCT+TGG | + | chr2_2:56280364-56280383 | Msa0259300:CDS | 40.0% |
| GTGCAGTGTCAATTATCTCA+TGG | - | chr2_2:56280696-56280715 | None:intergenic | 40.0% | |
| ! | ACATTTTCTTGTGCCCTGTT+TGG | + | chr2_2:56280767-56280786 | Msa0259300:CDS | 40.0% |
| ! | CATTTTCTTGTGCCCTGTTT+GGG | + | chr2_2:56280768-56280787 | Msa0259300:CDS | 40.0% |
| ! | AAGTCGAAGATAACTTGGTG+AGG | + | chr2_2:56281051-56281070 | Msa0259300:intron | 40.0% |
| AGTCCCCACATGAACTAAAT+TGG | - | chr2_2:56281212-56281231 | None:intergenic | 40.0% | |
| ! | TGTAGGTCAATTTTGCAAGG+TGG | + | chr2_2:56281416-56281435 | Msa0259300:intron | 40.0% |
| ! | GTAGGTCAATTTTGCAAGGT+GGG | + | chr2_2:56281417-56281436 | Msa0259300:intron | 40.0% |
| ! | ATTGGAATCTGAAACGACCA+TGG | - | chr2_2:56281450-56281469 | None:intergenic | 40.0% |
| GATAAGCACATTGCCTTGAT+AGG | - | chr2_2:56281504-56281523 | None:intergenic | 40.0% | |
| TATCGGATTGATGCCCTTAA+TGG | + | chr2_2:56281520-56281539 | Msa0259300:CDS | 40.0% | |
| GATGAGCATAGAAACAGGAA+AGG | + | chr2_2:56281706-56281725 | Msa0259300:CDS | 40.0% | |
| TGATTCTGCAAGTTTCTCAG+TGG | - | chr2_2:56281924-56281943 | None:intergenic | 40.0% | |
| CTACTATCACTGCATGTTTG+TGG | - | chr2_2:56282022-56282041 | None:intergenic | 40.0% | |
| CAAACATGCAGTGATAGTAG+TGG | + | chr2_2:56282022-56282041 | Msa0259300:CDS | 40.0% | |
| ! | GTGTCAATTTTGTACAAGGC+TGG | - | chr2_2:56282072-56282091 | None:intergenic | 40.0% |
| GTTGTCTCCGAATTCTCTGT+AGG | + | chr2_2:56279778-56279797 | Msa0259300:CDS | 45.0% | |
| !! | TTTTTAGAAGGTGCGCAAGC+AGG | + | chr2_2:56280844-56280863 | Msa0259300:CDS | 45.0% |
| ! | AATCTGAAACGACCATGGCA+GGG | - | chr2_2:56281445-56281464 | None:intergenic | 45.0% |
| !!! | AGGTTGGTGGAACCGTTTTT+TGG | - | chr2_2:56281757-56281776 | None:intergenic | 45.0% |
| ATGTGAGTTTCTGCTGAGGT+TGG | - | chr2_2:56281773-56281792 | None:intergenic | 45.0% | |
| TGCAATGTGAGTTTCTGCTG+AGG | - | chr2_2:56281777-56281796 | None:intergenic | 45.0% | |
| GATCATGGACCTTAGGTTTG+TGG | - | chr2_2:56281816-56281835 | None:intergenic | 45.0% | |
| AATGAAGCCACGGTTACAAC+AGG | - | chr2_2:56281881-56281900 | None:intergenic | 45.0% | |
| !! | TAAATAAATACTAAAAAAAA+TGG | - | chr2_2:56280232-56280251 | None:intergenic | 5.0% |
| !! | AAAAAAAATAAAAATTGTAT+TGG | - | chr2_2:56280547-56280566 | None:intergenic | 5.0% |
| GCAGGAGCAACACTTGGAAA+AGG | + | chr2_2:56280322-56280341 | Msa0259300:intron | 50.0% | |
| TTGGCTGGTGTTCTTGGACT+TGG | + | chr2_2:56280370-56280389 | Msa0259300:CDS | 50.0% | |
| ! | GAATCTGAAACGACCATGGC+AGG | - | chr2_2:56281446-56281465 | None:intergenic | 50.0% |
| TGAGTTTCTGCTGAGGTTGG+TGG | - | chr2_2:56281770-56281789 | None:intergenic | 50.0% | |
| GGTTGTTCCTGTTGTAACCG+TGG | + | chr2_2:56281871-56281890 | Msa0259300:CDS | 50.0% | |
| GCACATGCAGGAGCAACACT+TGG | + | chr2_2:56280316-56280335 | Msa0259300:intron | 55.0% | |
| TTCTTGTGCCCTGTTTGGGC+TGG | + | chr2_2:56280772-56280791 | Msa0259300:CDS | 55.0% | |
| GATCACCACCAGCCCAAACA+GGG | - | chr2_2:56280783-56280802 | None:intergenic | 55.0% | |
| AGATCACCACCAGCCCAAAC+AGG | - | chr2_2:56280784-56280803 | None:intergenic | 55.0% | |
| ! | TTGTGCCCTGTTTGGGCTGG+TGG | + | chr2_2:56280775-56280794 | Msa0259300:CDS | 60.0% |
| GCAAGGTGGGAACCCTGCCA+TGG | + | chr2_2:56281430-56281449 | Msa0259300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 56279610 | 56282108 | 56279610 | ID=Msa0259300;Name=Msa0259300 |
| chr2_2 | mRNA | 56279610 | 56282108 | 56279610 | ID=Msa0259300-mRNA-1;Parent=Msa0259300;Name=Msa0259300-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|6|0|440 |
| chr2_2 | exon | 56279610 | 56279799 | 56279610 | ID=Msa0259300-mRNA-1:exon:17034;Parent=Msa0259300-mRNA-1 |
| chr2_2 | exon | 56280326 | 56280475 | 56280326 | ID=Msa0259300-mRNA-1:exon:17035;Parent=Msa0259300-mRNA-1 |
| chr2_2 | exon | 56280581 | 56280865 | 56280581 | ID=Msa0259300-mRNA-1:exon:17036;Parent=Msa0259300-mRNA-1 |
| chr2_2 | exon | 56280961 | 56281067 | 56280961 | ID=Msa0259300-mRNA-1:exon:17037;Parent=Msa0259300-mRNA-1 |
| chr2_2 | exon | 56281421 | 56281564 | 56281421 | ID=Msa0259300-mRNA-1:exon:17038;Parent=Msa0259300-mRNA-1 |
| chr2_2 | exon | 56281662 | 56282108 | 56281662 | ID=Msa0259300-mRNA-1:exon:17039;Parent=Msa0259300-mRNA-1 |
| chr2_2 | CDS | 56279610 | 56279799 | 56279610 | ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1 |
| chr2_2 | CDS | 56280326 | 56280475 | 56280326 | ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1 |
| chr2_2 | CDS | 56280581 | 56280865 | 56280581 | ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1 |
| chr2_2 | CDS | 56280961 | 56281067 | 56280961 | ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1 |
| chr2_2 | CDS | 56281421 | 56281564 | 56281421 | ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1 |
| chr2_2 | CDS | 56281662 | 56282108 | 56281662 | ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
