AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259300 MtrunA17_Chr2g0321971 95.794 428 14 1 1 428 29 452 0.0 846
Msa0259300 MtrunA17_Chr7g0267471 50.114 437 206 4 1 432 34 463 9.98e-150 434
Msa0259300 MtrunA17_Chr4g0025591 49.771 436 201 6 8 433 40 467 9.28e-146 424
Msa0259300 MtrunA17_Chr2g0321961 44.780 431 222 5 1 428 29 446 2.60e-134 394
Msa0259300 MtrunA17_Chr1g0188881 41.050 419 220 4 9 409 52 461 5.87e-111 335
Msa0259300 MtrunA17_Chr1g0188871 41.860 430 230 6 9 426 46 467 2.82e-110 333
Msa0259300 MtrunA17_Chr1g0212201 40.432 324 189 2 3 325 35 355 1.69e-81 261
Msa0259300 MtrunA17_Chr7g0259731 36.829 391 233 7 14 399 61 442 7.40e-78 248
Msa0259300 MtrunA17_Chr1g0212251 39.873 316 187 1 10 325 38 350 2.66e-77 249
Msa0259300 MtrunA17_Chr4g0054741 36.253 411 243 6 9 413 49 446 9.98e-76 246
Msa0259300 MtrunA17_Chr1g0212291 41.956 317 180 2 9 324 38 351 5.16e-72 236
Msa0259300 MtrunA17_Chr6g0484691 38.272 324 190 5 9 325 84 404 6.71e-61 208
Msa0259300 MtrunA17_Chr1g0210101 36.254 331 190 7 6 325 110 430 1.39e-59 204
Msa0259300 MtrunA17_Chr8g0390931 35.737 319 193 6 9 325 59 367 2.38e-58 201
Msa0259300 MtrunA17_Chr8g0390921 34.663 326 197 7 9 325 60 378 1.04e-54 191
Msa0259300 MtrunA17_Chr5g0400471 37.631 287 150 5 65 324 3 287 6.61e-54 186
Msa0259300 MtrunA17_Chr8g0390901 34.686 271 162 6 64 325 10 274 4.08e-44 160
Msa0259300 MtrunA17_Chr4g0054771 34.025 241 144 4 115 351 4 233 1.26e-43 157
Msa0259300 MtrunA17_Chr5g0400481 58.621 58 24 0 10 67 58 115 1.81e-16 75.5
Msa0259300 MtrunA17_Chr4g0054761 58.462 65 27 0 9 73 49 113 1.01e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259300 AT1G08440.1 49.490 392 186 3 8 394 12 396 2.36e-142 416
Msa0259300 AT2G27240.2 49.497 398 187 4 8 399 12 401 7.00e-142 414
Msa0259300 AT2G27240.1 47.381 420 189 4 8 399 12 427 8.87e-140 410
Msa0259300 AT1G08430.1 46.867 399 195 5 10 399 14 404 2.01e-139 409
Msa0259300 AT3G11680.2 48.762 404 195 6 7 406 36 431 2.95e-125 372
Msa0259300 AT3G11680.1 48.762 404 195 6 7 406 34 429 3.80e-125 372
Msa0259300 AT4G00910.1 38.337 433 239 4 4 412 53 481 3.12e-103 316
Msa0259300 AT4G17970.1 40.720 361 198 6 6 360 36 386 1.60e-86 275
Msa0259300 AT5G46600.1 38.462 364 214 4 3 360 36 395 3.02e-79 255
Msa0259300 AT5G46610.1 39.319 323 192 2 3 324 35 354 1.01e-78 254
Msa0259300 AT5G46610.2 35.913 323 179 3 3 324 35 330 3.43e-65 218
Msa0259300 AT5G46610.3 34.385 317 157 2 9 324 41 307 2.67e-60 204
Msa0259300 AT3G18440.1 33.151 365 225 9 9 359 79 438 3.38e-59 204
Msa0259300 AT1G18420.1 34.036 332 206 5 2 325 76 402 4.35e-59 203
Msa0259300 AT1G18420.2 34.259 324 200 5 10 325 1 319 1.10e-58 200
Msa0259300 AT1G68600.1 36.585 328 194 7 6 325 45 366 1.35e-57 198
Msa0259300 AT1G25480.1 36.747 332 196 7 2 325 52 377 2.21e-57 198
Msa0259300 AT2G17470.1 35.671 328 197 7 6 325 28 349 4.14e-56 194
Msa0259300 AT2G17470.2 35.671 328 197 7 6 325 50 371 7.20e-56 194
Msa0259300 AT4G17585.1 56.604 53 23 0 6 58 36 88 1.40e-13 68.6

Find 72 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAATGAATGACCCTTCT+AGG 0.191366 2_2:-56279652 None:intergenic
ATAATTGAACCTATACTTCT+TGG 0.239685 2_2:+56280433 Msa0259300:CDS
GATATTGTTGCCAAGGATAT+TGG 0.241933 2_2:-56281465 None:intergenic
AGTTGTTAAGGAAGCCATTA+AGG 0.268610 2_2:-56281534 None:intergenic
TATCGGATTGATGCCCTTAA+TGG 0.282687 2_2:+56281520 Msa0259300:CDS
TGTACAAAATTGACACATAA+TGG 0.288079 2_2:+56282076 Msa0259300:CDS
AAACCTCTCTATGATAGTTT+TGG 0.300107 2_2:+56279721 Msa0259300:CDS
TTGGCTGGTGTTCTTGGACT+TGG 0.319754 2_2:+56280370 Msa0259300:CDS
ATGAAGGCTAGATATGATTA+TGG 0.325434 2_2:+56280616 Msa0259300:CDS
GATAAGCACATTGCCTTGAT+AGG 0.359354 2_2:-56281501 None:intergenic
CTTGGAAAAGGTTTAAATAG+AGG 0.383071 2_2:+56280334 Msa0259300:CDS
TCATATCTAGCCTTCATTAG+AGG 0.384146 2_2:-56280610 None:intergenic
TTCTTGTGCCCTGTTTGGGC+TGG 0.387615 2_2:+56280772 Msa0259300:CDS
TATCAAGGCAATGTGCTTAT+CGG 0.393258 2_2:+56281503 Msa0259300:CDS
GATCATGGACCTTAGGTTTG+TGG 0.393496 2_2:-56281813 None:intergenic
TGGCAACAATATCAAAAGAT+TGG 0.402570 2_2:+56281475 Msa0259300:CDS
GTACCTTAGTGAAGTTGTTA+AGG 0.410620 2_2:-56281546 None:intergenic
TGGGAAAAGAAGATCCTAGA+AGG 0.411010 2_2:+56279638 Msa0259300:CDS
TAATTGACACTGCACAAGAT+AGG 0.418272 2_2:+56280701 Msa0259300:CDS
CTACTATCACTGCATGTTTG+TGG 0.427671 2_2:-56282019 None:intergenic
AAACTTGCCTACAGAGAATT+CGG 0.429274 2_2:-56279785 None:intergenic
TTGTGCCCTGTTTGGGCTGG+TGG 0.433334 2_2:+56280775 Msa0259300:CDS
ATTATGATTCCAAGAAGTAT+AGG 0.433596 2_2:-56280442 None:intergenic
AGATCACCACCAGCCCAAAC+AGG 0.433992 2_2:-56280781 None:intergenic
GTACAAAATTGACACATAAT+GGG 0.436412 2_2:+56282077 Msa0259300:CDS
GGCTAGATATGATTATGGTT+TGG 0.440433 2_2:+56280621 Msa0259300:CDS
GAATCTGAAACGACCATGGC+AGG 0.446207 2_2:-56281443 None:intergenic
GATGTTGCAGCTGAAAGAAT+TGG 0.448481 2_2:+56279618 Msa0259300:CDS
GTTGTTAAGGAAGCCATTAA+GGG 0.460812 2_2:-56281533 None:intergenic
AGTAGCATTTGCTATTACAT+TGG 0.462751 2_2:+56279678 Msa0259300:CDS
GTTTCAGATTCCAATATCCT+TGG 0.467661 2_2:+56281455 Msa0259300:CDS
ATTAAGATGAGCATAGAAAC+AGG 0.468944 2_2:+56281701 Msa0259300:CDS
AATGAAGCCACGGTTACAAC+AGG 0.480765 2_2:-56281878 None:intergenic
TTTGAATTATTTCAGCTGCA+GGG 0.486846 2_2:+56280566 Msa0259300:intron
TCGATTTATACCTCTAATGA+AGG 0.491939 2_2:+56280600 Msa0259300:CDS
CATGATCAAAACAAAATTGT+GGG 0.502020 2_2:+56281829 Msa0259300:CDS
TCTATGCTCATCTTAATGCA+TGG 0.508658 2_2:-56281695 None:intergenic
GTGCAGTGTCAATTATCTCA+TGG 0.511026 2_2:-56280693 None:intergenic
GCAGGAGCAACACTTGGAAA+AGG 0.511844 2_2:+56280322 Msa0259300:intron
TGGACTTGGATCTTATTACA+TGG 0.514673 2_2:+56280384 Msa0259300:CDS
TGGTGGATTAATTTCTGTGT+TGG 0.515117 2_2:+56280741 Msa0259300:CDS
GTAACAACAATTCTAGTTGG+TGG 0.515822 2_2:+56280724 Msa0259300:CDS
CTTCCTTAACAACTTCACTA+AGG 0.516652 2_2:+56281543 Msa0259300:CDS
ATGTTGCAGCTGAAAGAATT+GGG 0.527158 2_2:+56279619 Msa0259300:CDS
TGAGTTTCTGCTGAGGTTGG+TGG 0.528304 2_2:-56281767 None:intergenic
AAAAGATTGGAAACCTATCA+AGG 0.530845 2_2:+56281488 Msa0259300:CDS
AGGGTAACAACAATTCTAGT+TGG 0.536338 2_2:+56280721 Msa0259300:CDS
CCATGATCAAAACAAAATTG+TGG 0.536457 2_2:+56281828 Msa0259300:CDS
AATTGACACTGCACAAGATA+GGG 0.540293 2_2:+56280702 Msa0259300:CDS
GGAAGACACAAATTTGTTTG+AGG 0.543623 2_2:+56281850 Msa0259300:CDS
AAAACAAGTCGAAGATAACT+TGG 0.544545 2_2:+56281046 Msa0259300:CDS
CTTAGCAAAATTTAAGAACA+AGG 0.557015 2_2:+56281961 Msa0259300:CDS
TTGAATTATTTCAGCTGCAG+GGG 0.563412 2_2:+56280567 Msa0259300:intron
GTTGTCTCCGAATTCTCTGT+AGG 0.565117 2_2:+56279778 Msa0259300:CDS
GCACATGCAGGAGCAACACT+TGG 0.568214 2_2:+56280316 Msa0259300:intron
ATGTGAGTTTCTGCTGAGGT+TGG 0.568552 2_2:-56281770 None:intergenic
GCAAGGTGGGAACCCTGCCA+TGG 0.570019 2_2:+56281430 Msa0259300:CDS
TCAAATAAATCATTTATGCA+AGG 0.574471 2_2:+56281002 Msa0259300:CDS
ATGGTTCATACAATTTCAAG+AGG 0.574977 2_2:+56280403 Msa0259300:CDS
AGATTTATGCCACAAACCTA+AGG 0.581612 2_2:+56281804 Msa0259300:CDS
ATCAAGCAATAATGAAGCCA+CGG 0.596047 2_2:-56281888 None:intergenic
TTAATTATAATAACATGTTG+TGG 0.607316 2_2:-56282046 None:intergenic
GGGAAAAGAAGATCCTAGAA+GGG 0.628854 2_2:+56279639 Msa0259300:CDS
GATGAGCATAGAAACAGGAA+AGG 0.631774 2_2:+56281706 Msa0259300:CDS
CAAACATGCAGTGATAGTAG+TGG 0.633845 2_2:+56282022 Msa0259300:CDS
GAACCAAAACTATCATAGAG+AGG 0.635110 2_2:-56279724 None:intergenic
TGCAATGTGAGTTTCTGCTG+AGG 0.637883 2_2:-56281774 None:intergenic
TGATTCTGCAAGTTTCTCAG+TGG 0.649200 2_2:-56281921 None:intergenic
ATTGGAATCTGAAACGACCA+TGG 0.657737 2_2:-56281447 None:intergenic
AATCTGAAACGACCATGGCA+GGG 0.657967 2_2:-56281442 None:intergenic
GGTTGTTCCTGTTGTAACCG+TGG 0.667584 2_2:+56281871 Msa0259300:CDS
GATCACCACCAGCCCAAACA+GGG 0.679414 2_2:-56280780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATTACATAGAAAAAA+TGG + chr2_2:56279954-56279973 Msa0259300:intron 10.0%
!!! AATTTACAATAACATAATTT+TGG - chr2_2:56281086-56281105 None:intergenic 10.0%
!!! AATTTTGTAAATTGTGATTA+TGG + chr2_2:56280869-56280888 Msa0259300:intron 15.0%
!! TTAATTATAATAACATGTTG+TGG - chr2_2:56282049-56282068 None:intergenic 15.0%
!!! TTATTCTATGTTTCTACAAT+CGG - chr2_2:56280176-56280195 None:intergenic 20.0%
!!! GAATAAATAGTATTTTGTAG+AGG + chr2_2:56280190-56280209 Msa0259300:intron 20.0%
!!! TATTTGATAATTTCACTAGT+AGG + chr2_2:56280500-56280519 Msa0259300:intron 20.0%
!! TCAAAAAACATTGAAAAACT+TGG + chr2_2:56280817-56280836 Msa0259300:CDS 20.0%
!! TGTTGAAATTGATTAATTCT+TGG + chr2_2:56280928-56280947 Msa0259300:intron 20.0%
!! ATTAATTCTTGGAAAATTGT+AGG + chr2_2:56280939-56280958 Msa0259300:intron 20.0%
!! TCAAATAAATCATTTATGCA+AGG + chr2_2:56281002-56281021 Msa0259300:CDS 20.0%
!! ATATATTGAGAAATATTCCA+TGG - chr2_2:56281135-56281154 None:intergenic 20.0%
!!! ATTAGTTTAATACCTTTTGT+AGG + chr2_2:56281399-56281418 Msa0259300:intron 20.0%
!! ATCAATATCAATCCAAAAAA+CGG + chr2_2:56281742-56281761 Msa0259300:CDS 20.0%
!!! GTTTTGTTTGTTGTTTTCTT+TGG + chr2_2:56279804-56279823 Msa0259300:intron 25.0%
!!! GTTTTAATCATGCATGTTTT+TGG + chr2_2:56279826-56279845 Msa0259300:intron 25.0%
! TAGTAGACACTAAACTTAAA+TGG - chr2_2:56279857-56279876 None:intergenic 25.0%
!!! TTTTTCTCTAGTCTTAACTT+TGG + chr2_2:56279879-56279898 Msa0259300:intron 25.0%
! ATCTTAATTCCAAAAATGCA+TGG + chr2_2:56280051-56280070 Msa0259300:intron 25.0%
! ATAATTGAACCTATACTTCT+TGG + chr2_2:56280433-56280452 Msa0259300:CDS 25.0%
!! ATTATGATTCCAAGAAGTAT+AGG - chr2_2:56280445-56280464 None:intergenic 25.0%
!! GTTTATCTTGACATTTTGTT+TGG + chr2_2:56280648-56280667 Msa0259300:CDS 25.0%
! TCTACTACGATTTACATATA+CGG + chr2_2:56281319-56281338 Msa0259300:intron 25.0%
!! AAGTTTAGTAGAGTATTTCT+TGG + chr2_2:56281594-56281613 Msa0259300:intron 25.0%
!!! ACTTTTTTTATAGACACCAA+AGG + chr2_2:56281649-56281668 Msa0259300:intron 25.0%
!!! ATTTTGCTTTTGATTTCCTT+TGG - chr2_2:56281668-56281687 None:intergenic 25.0%
! CATGATCAAAACAAAATTGT+GGG + chr2_2:56281829-56281848 Msa0259300:CDS 25.0%
!! CTTGTTCTTAAATTTTGCTA+AGG - chr2_2:56281963-56281982 None:intergenic 25.0%
! CTTAGCAAAATTTAAGAACA+AGG + chr2_2:56281961-56281980 Msa0259300:CDS 25.0%
!! TTATGTGTCAATTTTGTACA+AGG - chr2_2:56282076-56282095 None:intergenic 25.0%
! TGTACAAAATTGACACATAA+TGG + chr2_2:56282076-56282095 Msa0259300:CDS 25.0%
! GTACAAAATTGACACATAAT+GGG + chr2_2:56282077-56282096 Msa0259300:CDS 25.0%
!! AGTAGCATTTGCTATTACAT+TGG + chr2_2:56279678-56279697 Msa0259300:CDS 30.0%
! AAACCTCTCTATGATAGTTT+TGG + chr2_2:56279721-56279740 Msa0259300:CDS 30.0%
!! CATATTATTTTGCCACTTGT+TGG + chr2_2:56279914-56279933 Msa0259300:intron 30.0%
TTAATTCCAAAAATGCATGG+TGG + chr2_2:56280054-56280073 Msa0259300:intron 30.0%
!!! ATCGGTCATAGATTTTTTTG+TGG - chr2_2:56280158-56280177 None:intergenic 30.0%
!! ATGCGAACTTGAATTTTAAC+TGG + chr2_2:56280270-56280289 Msa0259300:intron 30.0%
CTTGGAAAAGGTTTAAATAG+AGG + chr2_2:56280334-56280353 Msa0259300:CDS 30.0%
! TAGAGGTTTAGCAACATTTT+TGG + chr2_2:56280351-56280370 Msa0259300:CDS 30.0%
ATGGTTCATACAATTTCAAG+AGG + chr2_2:56280403-56280422 Msa0259300:CDS 30.0%
! TTTTGAATTATTTCAGCTGC+AGG + chr2_2:56280565-56280584 Msa0259300:intron 30.0%
TTTGAATTATTTCAGCTGCA+GGG + chr2_2:56280566-56280585 Msa0259300:intron 30.0%
TCGATTTATACCTCTAATGA+AGG + chr2_2:56280600-56280619 Msa0259300:CDS 30.0%
ATGAAGGCTAGATATGATTA+TGG + chr2_2:56280616-56280635 Msa0259300:CDS 30.0%
! AAACTTGGCAACTTTTTAGA+AGG + chr2_2:56280832-56280851 Msa0259300:CDS 30.0%
! TCTTGGAAAATTGTAGGTTT+TGG + chr2_2:56280945-56280964 Msa0259300:intron 30.0%
!!! GGTTTTGGAGATGAATATTT+TGG + chr2_2:56280960-56280979 Msa0259300:intron 30.0%
AAAACAAGTCGAAGATAACT+TGG + chr2_2:56281046-56281065 Msa0259300:CDS 30.0%
TCATCAAATCAAAATGTCCA+TGG + chr2_2:56281115-56281134 Msa0259300:intron 30.0%
TCAAATATGTTGAAAAGTCG+TGG - chr2_2:56281291-56281310 None:intergenic 30.0%
CTACTACGATTTACATATAC+GGG + chr2_2:56281320-56281339 Msa0259300:intron 30.0%
TTGCAAAATTGACCTACAAA+AGG - chr2_2:56281414-56281433 None:intergenic 30.0%
! TTTTGTAGGTCAATTTTGCA+AGG + chr2_2:56281413-56281432 Msa0259300:intron 30.0%
! ATCTTTTGATATTGTTGCCA+AGG - chr2_2:56281475-56281494 None:intergenic 30.0%
TGGCAACAATATCAAAAGAT+TGG + chr2_2:56281475-56281494 Msa0259300:CDS 30.0%
AAAAGATTGGAAACCTATCA+AGG + chr2_2:56281488-56281507 Msa0259300:CDS 30.0%
ATTAAGATGAGCATAGAAAC+AGG + chr2_2:56281701-56281720 Msa0259300:CDS 30.0%
!!! CCACAATTTTGTTTTGATCA+TGG - chr2_2:56281831-56281850 None:intergenic 30.0%
CCATGATCAAAACAAAATTG+TGG + chr2_2:56281828-56281847 Msa0259300:CDS 30.0%
! GTTCTTAAATTTTGCTAAGG+TGG - chr2_2:56281960-56281979 None:intergenic 30.0%
ATGTTGCAGCTGAAAGAATT+GGG + chr2_2:56279619-56279638 Msa0259300:CDS 35.0%
AAAGAATGAATGACCCTTCT+AGG - chr2_2:56279655-56279674 None:intergenic 35.0%
GAACCAAAACTATCATAGAG+AGG - chr2_2:56279727-56279746 None:intergenic 35.0%
!!! TTTTGGTTCTTCTGCAATGT+GGG + chr2_2:56279738-56279757 Msa0259300:CDS 35.0%
AAACTTGCCTACAGAGAATT+CGG - chr2_2:56279788-56279807 None:intergenic 35.0%
TATGATCTTGATCCAACAAG+TGG - chr2_2:56279929-56279948 None:intergenic 35.0%
CTTGTTGGATCAAGATCATA+CGG + chr2_2:56279929-56279948 Msa0259300:intron 35.0%
TTGTGGACATACGTAAATGT+TGG - chr2_2:56280141-56280160 None:intergenic 35.0%
!!! CGAACTTGAATTTTAACTGG+TGG + chr2_2:56280273-56280292 Msa0259300:intron 35.0%
TTTGATTATGTTGCACATGC+AGG + chr2_2:56280304-56280323 Msa0259300:intron 35.0%
TGGACTTGGATCTTATTACA+TGG + chr2_2:56280384-56280403 Msa0259300:CDS 35.0%
TTGAATTATTTCAGCTGCAG+GGG + chr2_2:56280567-56280586 Msa0259300:intron 35.0%
! TCATATCTAGCCTTCATTAG+AGG - chr2_2:56280613-56280632 None:intergenic 35.0%
GGCTAGATATGATTATGGTT+TGG + chr2_2:56280621-56280640 Msa0259300:CDS 35.0%
TAATTGACACTGCACAAGAT+AGG + chr2_2:56280701-56280720 Msa0259300:CDS 35.0%
AATTGACACTGCACAAGATA+GGG + chr2_2:56280702-56280721 Msa0259300:CDS 35.0%
AGGGTAACAACAATTCTAGT+TGG + chr2_2:56280721-56280740 Msa0259300:CDS 35.0%
! GTAACAACAATTCTAGTTGG+TGG + chr2_2:56280724-56280743 Msa0259300:CDS 35.0%
!! TGGTGGATTAATTTCTGTGT+TGG + chr2_2:56280741-56280760 Msa0259300:CDS 35.0%
!!! TATTTTGGAACACTAGATGC+TGG + chr2_2:56280975-56280994 Msa0259300:CDS 35.0%
AGACATGTCAATGTTCAACT+AGG - chr2_2:56281189-56281208 None:intergenic 35.0%
! TGTCTCCAATTTAGTTCATG+TGG + chr2_2:56281204-56281223 Msa0259300:intron 35.0%
! GTCTCCAATTTAGTTCATGT+GGG + chr2_2:56281205-56281224 Msa0259300:intron 35.0%
! TCTCCAATTTAGTTCATGTG+GGG + chr2_2:56281206-56281225 Msa0259300:intron 35.0%
TAAGTCAGAGTAGACAAAGA+CGG - chr2_2:56281376-56281395 None:intergenic 35.0%
GTTTCAGATTCCAATATCCT+TGG + chr2_2:56281455-56281474 Msa0259300:CDS 35.0%
GATATTGTTGCCAAGGATAT+TGG - chr2_2:56281468-56281487 None:intergenic 35.0%
TATCAAGGCAATGTGCTTAT+CGG + chr2_2:56281503-56281522 Msa0259300:CDS 35.0%
GTTGTTAAGGAAGCCATTAA+GGG - chr2_2:56281536-56281555 None:intergenic 35.0%
AGTTGTTAAGGAAGCCATTA+AGG - chr2_2:56281537-56281556 None:intergenic 35.0%
CTTCCTTAACAACTTCACTA+AGG + chr2_2:56281543-56281562 Msa0259300:CDS 35.0%
GTACCTTAGTGAAGTTGTTA+AGG - chr2_2:56281549-56281568 None:intergenic 35.0%
TCTATGCTCATCTTAATGCA+TGG - chr2_2:56281698-56281717 None:intergenic 35.0%
AGATTTATGCCACAAACCTA+AGG + chr2_2:56281804-56281823 Msa0259300:CDS 35.0%
!!! TTGTTTTGATCATGGACCTT+AGG - chr2_2:56281823-56281842 None:intergenic 35.0%
! GGAAGACACAAATTTGTTTG+AGG + chr2_2:56281850-56281869 Msa0259300:CDS 35.0%
ATCAAGCAATAATGAAGCCA+CGG - chr2_2:56281891-56281910 None:intergenic 35.0%
GATGTTGCAGCTGAAAGAAT+TGG + chr2_2:56279618-56279637 Msa0259300:CDS 40.0%
TGGGAAAAGAAGATCCTAGA+AGG + chr2_2:56279638-56279657 Msa0259300:CDS 40.0%
GGGAAAAGAAGATCCTAGAA+GGG + chr2_2:56279639-56279658 Msa0259300:CDS 40.0%
!!! GTTTTGGTTCTTCTGCAATG+TGG + chr2_2:56279737-56279756 Msa0259300:CDS 40.0%
TCACGCATTCAACACATTGA+TGG - chr2_2:56280003-56280022 None:intergenic 40.0%
! TAAGTGCCACCATGCATTTT+TGG - chr2_2:56280063-56280082 None:intergenic 40.0%
!!! GGTTTAGCAACATTTTTGGC+TGG + chr2_2:56280355-56280374 Msa0259300:CDS 40.0%
!!! ACATTTTTGGCTGGTGTTCT+TGG + chr2_2:56280364-56280383 Msa0259300:CDS 40.0%
GTGCAGTGTCAATTATCTCA+TGG - chr2_2:56280696-56280715 None:intergenic 40.0%
! ACATTTTCTTGTGCCCTGTT+TGG + chr2_2:56280767-56280786 Msa0259300:CDS 40.0%
! CATTTTCTTGTGCCCTGTTT+GGG + chr2_2:56280768-56280787 Msa0259300:CDS 40.0%
! AAGTCGAAGATAACTTGGTG+AGG + chr2_2:56281051-56281070 Msa0259300:intron 40.0%
AGTCCCCACATGAACTAAAT+TGG - chr2_2:56281212-56281231 None:intergenic 40.0%
! TGTAGGTCAATTTTGCAAGG+TGG + chr2_2:56281416-56281435 Msa0259300:intron 40.0%
! GTAGGTCAATTTTGCAAGGT+GGG + chr2_2:56281417-56281436 Msa0259300:intron 40.0%
! ATTGGAATCTGAAACGACCA+TGG - chr2_2:56281450-56281469 None:intergenic 40.0%
GATAAGCACATTGCCTTGAT+AGG - chr2_2:56281504-56281523 None:intergenic 40.0%
TATCGGATTGATGCCCTTAA+TGG + chr2_2:56281520-56281539 Msa0259300:CDS 40.0%
GATGAGCATAGAAACAGGAA+AGG + chr2_2:56281706-56281725 Msa0259300:CDS 40.0%
TGATTCTGCAAGTTTCTCAG+TGG - chr2_2:56281924-56281943 None:intergenic 40.0%
CTACTATCACTGCATGTTTG+TGG - chr2_2:56282022-56282041 None:intergenic 40.0%
CAAACATGCAGTGATAGTAG+TGG + chr2_2:56282022-56282041 Msa0259300:CDS 40.0%
! GTGTCAATTTTGTACAAGGC+TGG - chr2_2:56282072-56282091 None:intergenic 40.0%
GTTGTCTCCGAATTCTCTGT+AGG + chr2_2:56279778-56279797 Msa0259300:CDS 45.0%
!! TTTTTAGAAGGTGCGCAAGC+AGG + chr2_2:56280844-56280863 Msa0259300:CDS 45.0%
! AATCTGAAACGACCATGGCA+GGG - chr2_2:56281445-56281464 None:intergenic 45.0%
!!! AGGTTGGTGGAACCGTTTTT+TGG - chr2_2:56281757-56281776 None:intergenic 45.0%
ATGTGAGTTTCTGCTGAGGT+TGG - chr2_2:56281773-56281792 None:intergenic 45.0%
TGCAATGTGAGTTTCTGCTG+AGG - chr2_2:56281777-56281796 None:intergenic 45.0%
GATCATGGACCTTAGGTTTG+TGG - chr2_2:56281816-56281835 None:intergenic 45.0%
AATGAAGCCACGGTTACAAC+AGG - chr2_2:56281881-56281900 None:intergenic 45.0%
!! TAAATAAATACTAAAAAAAA+TGG - chr2_2:56280232-56280251 None:intergenic 5.0%
!! AAAAAAAATAAAAATTGTAT+TGG - chr2_2:56280547-56280566 None:intergenic 5.0%
GCAGGAGCAACACTTGGAAA+AGG + chr2_2:56280322-56280341 Msa0259300:intron 50.0%
TTGGCTGGTGTTCTTGGACT+TGG + chr2_2:56280370-56280389 Msa0259300:CDS 50.0%
! GAATCTGAAACGACCATGGC+AGG - chr2_2:56281446-56281465 None:intergenic 50.0%
TGAGTTTCTGCTGAGGTTGG+TGG - chr2_2:56281770-56281789 None:intergenic 50.0%
GGTTGTTCCTGTTGTAACCG+TGG + chr2_2:56281871-56281890 Msa0259300:CDS 50.0%
GCACATGCAGGAGCAACACT+TGG + chr2_2:56280316-56280335 Msa0259300:intron 55.0%
TTCTTGTGCCCTGTTTGGGC+TGG + chr2_2:56280772-56280791 Msa0259300:CDS 55.0%
GATCACCACCAGCCCAAACA+GGG - chr2_2:56280783-56280802 None:intergenic 55.0%
AGATCACCACCAGCCCAAAC+AGG - chr2_2:56280784-56280803 None:intergenic 55.0%
! TTGTGCCCTGTTTGGGCTGG+TGG + chr2_2:56280775-56280794 Msa0259300:CDS 60.0%
GCAAGGTGGGAACCCTGCCA+TGG + chr2_2:56281430-56281449 Msa0259300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56279610 56282108 56279610 ID=Msa0259300;Name=Msa0259300
chr2_2 mRNA 56279610 56282108 56279610 ID=Msa0259300-mRNA-1;Parent=Msa0259300;Name=Msa0259300-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|6|0|440
chr2_2 exon 56279610 56279799 56279610 ID=Msa0259300-mRNA-1:exon:17034;Parent=Msa0259300-mRNA-1
chr2_2 exon 56280326 56280475 56280326 ID=Msa0259300-mRNA-1:exon:17035;Parent=Msa0259300-mRNA-1
chr2_2 exon 56280581 56280865 56280581 ID=Msa0259300-mRNA-1:exon:17036;Parent=Msa0259300-mRNA-1
chr2_2 exon 56280961 56281067 56280961 ID=Msa0259300-mRNA-1:exon:17037;Parent=Msa0259300-mRNA-1
chr2_2 exon 56281421 56281564 56281421 ID=Msa0259300-mRNA-1:exon:17038;Parent=Msa0259300-mRNA-1
chr2_2 exon 56281662 56282108 56281662 ID=Msa0259300-mRNA-1:exon:17039;Parent=Msa0259300-mRNA-1
chr2_2 CDS 56279610 56279799 56279610 ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1
chr2_2 CDS 56280326 56280475 56280326 ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1
chr2_2 CDS 56280581 56280865 56280581 ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1
chr2_2 CDS 56280961 56281067 56280961 ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1
chr2_2 CDS 56281421 56281564 56281421 ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1
chr2_2 CDS 56281662 56282108 56281662 ID=Msa0259300-mRNA-1:cds;Parent=Msa0259300-mRNA-1
Gene Sequence

>Msa0259300

ATGAATGTGATGTTGCAGCTGAAAGAATTGGGAAAAGAAGATCCTAGAAGGGTCATTCATTCTTTGAAAGTAGCATTTGCTATTACATTGGTTTCAACATTTTACTATCTTAAACCTCTCTATGATAGTTTTGGTTCTTCTGCAATGTGGGCTGTTATGACTGTTGTTGTTGTCTCCGAATTCTCTGTAGGAGCAACACTTGGAAAAGGTTTAAATAGAGGTTTAGCAACATTTTTGGCTGGTGTTCTTGGACTTGGATCTTATTACATGGTTCATACAATTTCAAGAGGAAATACAATAATTGAACCTATACTTCTTGGAATCATAATATTTCTAGCAACTGCAGGGGCTACATATATTCGATTTATACCTCTAATGAAGGCTAGATATGATTATGGTTTGGTAGTGTTTATCTTGACATTTTGTTTGGTATCTGTATCAAGTTATAGAGACCATGAGATAATTGACACTGCACAAGATAGGGTAACAACAATTCTAGTTGGTGGATTAATTTCTGTGTTGGTTAACATTTTCTTGTGCCCTGTTTGGGCTGGTGGTGATCTTCACAATCTAGCATCAAAAAACATTGAAAAACTTGGCAACTTTTTAGAAGGTGCGCAAGCAGGTTTTGGAGATGAATATTTTGGAACACTAGATGCTGGAGAATCAAATAAATCATTTATGCAAGGATATAAGAGTGTTCTTAATGCAAAACAAGTCGAAGATAACTTGGTCAATTTTGCAAGGTGGGAACCCTGCCATGGTCGTTTCAGATTCCAATATCCTTGGCAACAATATCAAAAGATTGGAAACCTATCAAGGCAATGTGCTTATCGGATTGATGCCCTTAATGGCTTCCTTAACAACTTCACTAAGACACCAAAGGAAATCAAAAGCAAAATACAAGAACCATGCATTAAGATGAGCATAGAAACAGGAAAGGCTTTAAAGCAATTATCAATATCAATCCAAAAAACGGTTCCACCAACCTCAGCAGAAACTCACATTGCAACATCTAAGATTTATGCCACAAACCTAAGGTCCATGATCAAAACAAAATTGTGGGAAGACACAAATTTGTTTGAGGTTGTTCCTGTTGTAACCGTGGCTTCATTATTGCTTGATGTAGTTTCTTCCACTGAGAAACTTGCAGAATCAATACAAGAACTATCCACCTTAGCAAAATTTAAGAACAAGGAAAGTAAAGTTGCTGCAGATGATCAAAAAGAAGTTCCACAAACATGCAGTGATAGTAGTGGACCACAACATGTTATTATAATTAACCAGCCTTGTACAAAATTGACACATAATGGGAGTTCCTAA

Protein sequence

>Msa0259300

MNVMLQLKELGKEDPRRVIHSLKVAFAITLVSTFYYLKPLYDSFGSSAMWAVMTVVVVSEFSVGATLGKGLNRGLATFLAGVLGLGSYYMVHTISRGNTIIEPILLGIIIFLATAGATYIRFIPLMKARYDYGLVVFILTFCLVSVSSYRDHEIIDTAQDRVTTILVGGLISVLVNIFLCPVWAGGDLHNLASKNIEKLGNFLEGAQAGFGDEYFGTLDAGESNKSFMQGYKSVLNAKQVEDNLVNFARWEPCHGRFRFQYPWQQYQKIGNLSRQCAYRIDALNGFLNNFTKTPKEIKSKIQEPCIKMSIETGKALKQLSISIQKTVPPTSAETHIATSKIYATNLRSMIKTKLWEDTNLFEVVPVVTVASLLLDVVSSTEKLAESIQELSTLAKFKNKESKVAADDQKEVPQTCSDSSGPQHVIIINQPCTKLTHNGSS*