Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609720 | XP_003607732.3 | 97.354 | 189 | 5 | 0 | 22 | 210 | 25 | 213 | 3.67e-128 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609720 | sp|G7JG80|CASP2_MEDTR | 97.340 | 188 | 5 | 0 | 23 | 210 | 1 | 188 | 1.59e-130 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609720 | A0A396IGM0 | 97.354 | 189 | 5 | 0 | 22 | 210 | 30 | 218 | 2.36e-128 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024290 | Msa0609720 | 0.800008 | 1.763165e-48 | -8.615850e-47 |
| Msa0609720 | Msa0631700 | 0.855630 | 5.545358e-62 | -8.615850e-47 |
| Msa0609720 | Msa0650310 | 0.938168 | 1.050442e-98 | -8.615850e-47 |
| Msa0609720 | Msa0650440 | 0.928482 | 2.712174e-92 | -8.615850e-47 |
| Msa0609720 | Msa0670360 | 0.831527 | 1.586861e-55 | -8.615850e-47 |
| Msa0609720 | Msa0678620 | 0.802273 | 6.067184e-49 | -8.615850e-47 |
| Msa0609720 | Msa0692310 | 0.930866 | 8.762799e-94 | -8.615850e-47 |
| Msa0609720 | Msa0801860 | 0.805836 | 1.101260e-49 | -8.615850e-47 |
| Msa0609720 | Msa1022490 | 0.804267 | 2.344565e-49 | -8.615850e-47 |
| Msa0609720 | Msa1022510 | 0.817747 | 2.808370e-52 | -8.615850e-47 |
| Msa0609720 | Msa1061670 | 0.827958 | 1.173604e-54 | -8.615850e-47 |
| Msa0609720 | Msa1104960 | 0.804469 | 2.128025e-49 | -8.615850e-47 |
| Msa0609720 | Msa1106680 | 0.800102 | 1.686776e-48 | -8.615850e-47 |
| Msa0609720 | Msa1106960 | 0.827120 | 1.864132e-54 | -8.615850e-47 |
| Msa0609720 | Msa1355340 | 0.802395 | 5.724622e-49 | -8.615850e-47 |
| Msa0177550 | Msa0609720 | 0.817014 | 4.107830e-52 | -8.615850e-47 |
| Msa0366510 | Msa0609720 | 0.807417 | 5.106910e-50 | -8.615850e-47 |
| Msa0374040 | Msa0609720 | 0.811315 | 7.443460e-51 | -8.615850e-47 |
| Msa0414480 | Msa0609720 | 0.816788 | 4.615915e-52 | -8.615850e-47 |
| Msa0259110 | Msa0609720 | 0.807501 | 4.901744e-50 | -8.615850e-47 |
| Msa0515130 | Msa0609720 | 0.801907 | 7.213120e-49 | -8.615850e-47 |
| Msa0535570 | Msa0609720 | 0.845585 | 3.704254e-59 | -8.615850e-47 |
| Msa0543740 | Msa0609720 | 0.811601 | 6.451584e-51 | -8.615850e-47 |
| Msa0591490 | Msa0609720 | 0.823643 | 1.239999e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609720 | MtrunA17_Chr4g0042551 | 97.354 | 189 | 5 | 0 | 22 | 210 | 30 | 218 | 4.55e-132 | 370 |
| Msa0609720 | MtrunA17_Chr5g0417761 | 65.775 | 187 | 63 | 1 | 23 | 209 | 1 | 186 | 6.29e-78 | 231 |
| Msa0609720 | MtrunA17_Chr7g0217691 | 56.216 | 185 | 79 | 1 | 24 | 208 | 3 | 185 | 5.49e-69 | 209 |
| Msa0609720 | MtrunA17_Chr1g0178181 | 40.201 | 199 | 112 | 1 | 10 | 208 | 3 | 194 | 1.47e-39 | 134 |
| Msa0609720 | MtrunA17_Chr2g0321671 | 42.614 | 176 | 101 | 0 | 34 | 209 | 45 | 220 | 2.25e-37 | 129 |
| Msa0609720 | MtrunA17_Chr1g0178191 | 42.857 | 189 | 103 | 1 | 25 | 208 | 5 | 193 | 9.58e-37 | 127 |
| Msa0609720 | MtrunA17_Chr1g0178161 | 41.040 | 173 | 102 | 0 | 36 | 208 | 23 | 195 | 2.40e-36 | 126 |
| Msa0609720 | MtrunA17_Chr4g0021111 | 36.025 | 161 | 90 | 4 | 44 | 202 | 1 | 150 | 5.65e-18 | 77.8 |
| Msa0609720 | MtrunA17_Chr7g0268681 | 30.519 | 154 | 102 | 3 | 49 | 199 | 27 | 178 | 6.56e-18 | 78.2 |
| Msa0609720 | MtrunA17_Chr7g0251531 | 32.099 | 162 | 105 | 3 | 32 | 191 | 11 | 169 | 1.30e-13 | 66.6 |
| Msa0609720 | MtrunA17_Chr4g0066721 | 27.273 | 143 | 95 | 2 | 52 | 186 | 34 | 175 | 1.54e-13 | 66.6 |
| Msa0609720 | MtrunA17_Chr8g0381001 | 30.909 | 165 | 96 | 5 | 52 | 202 | 24 | 184 | 5.98e-13 | 65.1 |
| Msa0609720 | MtrunA17_Chr5g0433491 | 33.621 | 116 | 74 | 2 | 88 | 202 | 68 | 181 | 3.73e-12 | 63.2 |
| Msa0609720 | MtrunA17_Chr4g0066711 | 31.515 | 165 | 97 | 8 | 49 | 206 | 26 | 181 | 1.18e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0609720 | AT5G15290.1 | 56.548 | 168 | 70 | 2 | 23 | 189 | 1 | 166 | 4.73e-62 | 192 |
| Msa0609720 | AT1G14160.1 | 47.449 | 196 | 92 | 2 | 21 | 208 | 16 | 208 | 9.61e-60 | 186 |
| Msa0609720 | AT2G27370.1 | 47.904 | 167 | 87 | 0 | 43 | 209 | 54 | 220 | 1.13e-47 | 156 |
| Msa0609720 | AT2G36100.1 | 44.767 | 172 | 95 | 0 | 37 | 208 | 34 | 205 | 9.52e-42 | 140 |
| Msa0609720 | AT5G06200.1 | 50.000 | 166 | 83 | 0 | 43 | 208 | 36 | 201 | 1.63e-40 | 137 |
| Msa0609720 | AT3G11550.1 | 43.523 | 193 | 107 | 1 | 16 | 208 | 13 | 203 | 2.67e-37 | 129 |
| Msa0609720 | AT4G15620.1 | 29.630 | 189 | 107 | 6 | 32 | 206 | 13 | 189 | 3.44e-17 | 76.6 |
| Msa0609720 | AT4G15630.1 | 28.856 | 201 | 114 | 6 | 20 | 206 | 4 | 189 | 2.45e-16 | 74.3 |
| Msa0609720 | AT1G03700.1 | 32.895 | 152 | 87 | 3 | 54 | 202 | 12 | 151 | 3.87e-16 | 73.2 |
| Msa0609720 | AT4G03540.1 | 38.095 | 105 | 52 | 2 | 90 | 191 | 46 | 140 | 9.80e-14 | 66.6 |
| Msa0609720 | AT3G06390.1 | 28.467 | 137 | 93 | 2 | 51 | 182 | 37 | 173 | 4.78e-11 | 60.1 |
Find 41 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCTGCGGACGCATTTC+CGG | 0.160143 | 4_2:+57188760 | Msa0609720:CDS |
| GAATATAAGAGAATCTAATT+TGG | 0.306167 | 4_2:+57187742 | Msa0609720:CDS |
| ACTTGGAAGTGCATTGAGTA+TGG | 0.314679 | 4_2:+57187895 | Msa0609720:CDS |
| ATGTTTGGTCTTCTTACATC+TGG | 0.318237 | 4_2:+57188652 | Msa0609720:CDS |
| TCTCCACTATTTCAATGCTT+TGG | 0.329493 | 4_2:-57188860 | None:intergenic |
| GAAGAGAGGGCTTTCAATAA+TGG | 0.375320 | 4_2:+57187838 | Msa0609720:CDS |
| TGTCATTCTTCCACATTGTA+AGG | 0.389122 | 4_2:+57188144 | Msa0609720:CDS |
| AAACCAAAGCATTGAAATAG+TGG | 0.396825 | 4_2:+57188857 | Msa0609720:CDS |
| GGACTATTTCAGTGAAAAGT+AGG | 0.406947 | 4_2:+57188165 | Msa0609720:CDS |
| CGCATTTCCGGTTCACTCGT+TGG | 0.423380 | 4_2:+57188772 | Msa0609720:CDS |
| ATGATACTTATTCTCATGTC+AGG | 0.427186 | 4_2:+57188820 | Msa0609720:CDS |
| GTAGCCACATACAATAGAAT+TGG | 0.428984 | 4_2:-57188102 | None:intergenic |
| ATTGTTTATGTAGCTCACTA+TGG | 0.441275 | 4_2:+57188694 | Msa0609720:CDS |
| GGAGCATCATCCCAAAGAAA+AGG | 0.450818 | 4_2:+57187812 | Msa0609720:CDS |
| TCTCTTGGTCTTTCTTGATA+CGG | 0.450983 | 4_2:+57188190 | Msa0609720:CDS |
| GAACTTGTGAAGGTTATGTT+TGG | 0.469308 | 4_2:+57188637 | Msa0609720:intron |
| ATGGAAATCCCAGTGCCAAT+TGG | 0.476221 | 4_2:+57188713 | Msa0609720:CDS |
| GAAAGAGCCAACGAGTGAAC+CGG | 0.477626 | 4_2:-57188779 | None:intergenic |
| CTAACAAAACGTGTGGCAAA+AGG | 0.478599 | 4_2:-57187938 | None:intergenic |
| AGTGAAAAGTAGGATTCTCT+TGG | 0.484716 | 4_2:+57188175 | Msa0609720:CDS |
| GAAAGGAAACCAATTGGCAC+TGG | 0.490083 | 4_2:-57188722 | None:intergenic |
| CGCAGAAGGAGTTGTATTGT+TGG | 0.495681 | 4_2:-57188747 | None:intergenic |
| TTGGCAGAAAGGAAACCAAT+TGG | 0.505370 | 4_2:-57188728 | None:intergenic |
| GAGAGCGGTGAAATTTCAAA+AGG | 0.513548 | 4_2:+57187791 | Msa0609720:CDS |
| GAGTTGTATTGTTGGCAGAA+AGG | 0.513691 | 4_2:-57188739 | None:intergenic |
| GAGCATCATCCCAAAGAAAA+GGG | 0.519493 | 4_2:+57187813 | Msa0609720:CDS |
| AACAATGGCTGCTGCTGCTG+AGG | 0.545248 | 4_2:-57188677 | None:intergenic |
| ACCGGAAATGCGTCCGCAGA+AGG | 0.551171 | 4_2:-57188761 | None:intergenic |
| TTTGCAGCTATGAGCACACT+TGG | 0.566612 | 4_2:+57187878 | Msa0609720:CDS |
| TTACAATGTGGAAGAATGAC+AGG | 0.568556 | 4_2:-57188142 | None:intergenic |
| CTTGGAAGTGCATTGAGTAT+GGG | 0.582334 | 4_2:+57187896 | Msa0609720:CDS |
| AAAGAAAAGGGATGAAGAGA+GGG | 0.589149 | 4_2:+57187825 | Msa0609720:CDS |
| ACTACCAATTCTATTGTATG+TGG | 0.592296 | 4_2:+57188098 | Msa0609720:CDS |
| AAAGGAAACCAATTGGCACT+GGG | 0.608159 | 4_2:-57188721 | None:intergenic |
| CAAAGAAAAGGGATGAAGAG+AGG | 0.610616 | 4_2:+57187824 | Msa0609720:CDS |
| CAACAATACAACTCCTTCTG+CGG | 0.614837 | 4_2:+57188748 | Msa0609720:CDS |
| AGAGTGAACAAGTATCAGAA+TGG | 0.617085 | 4_2:-57187714 | None:intergenic |
| CTGAAATAGTCCTTACAATG+TGG | 0.618479 | 4_2:-57188154 | None:intergenic |
| TTTGAATCTAACAAAACGTG+TGG | 0.624264 | 4_2:-57187945 | None:intergenic |
| ATAGTGAGCTACATAAACAA+TGG | 0.652493 | 4_2:-57188692 | None:intergenic |
| AAGGTGAGTACAATTGAGAG+CGG | 0.725157 | 4_2:+57187776 | Msa0609720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATTTGATTAATTTC+AGG | + | chr4_2:57188066-57188085 | Msa0609720:intron | 15.0% |
| !! | ATTCATATTTGATTAATTTC+AGG | + | chr4_2:57188066-57188085 | Msa0609720:intron | 15.0% |
| !! | GAATATAAGAGAATCTAATT+TGG | + | chr4_2:57187742-57187761 | Msa0609720:CDS | 20.0% |
| !!! | TAATTTGGAACAAAAAATGA+AGG | + | chr4_2:57187757-57187776 | Msa0609720:CDS | 20.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | - | chr4_2:57188028-57188047 | None:intergenic | 20.0% |
| !! | TTATATATCTGTTTGGTTAA+TGG | + | chr4_2:57188265-57188284 | Msa0609720:intron | 20.0% |
| !! | TATATATCTGTTTGGTTAAT+GGG | + | chr4_2:57188266-57188285 | Msa0609720:intron | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | - | chr4_2:57188372-57188391 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | - | chr4_2:57188529-57188548 | None:intergenic | 20.0% |
| !! | GAATATAAGAGAATCTAATT+TGG | + | chr4_2:57187742-57187761 | Msa0609720:CDS | 20.0% |
| !!! | TAATTTGGAACAAAAAATGA+AGG | + | chr4_2:57187757-57187776 | Msa0609720:CDS | 20.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | - | chr4_2:57188028-57188047 | None:intergenic | 20.0% |
| !! | TTATATATCTGTTTGGTTAA+TGG | + | chr4_2:57188265-57188284 | Msa0609720:intron | 20.0% |
| !! | TATATATCTGTTTGGTTAAT+GGG | + | chr4_2:57188266-57188285 | Msa0609720:intron | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | - | chr4_2:57188372-57188391 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | - | chr4_2:57188529-57188548 | None:intergenic | 20.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | - | chr4_2:57187989-57188008 | None:intergenic | 25.0% |
| ! | TCCAAAGTTATATATCTGTT+TGG | + | chr4_2:57188258-57188277 | Msa0609720:intron | 25.0% |
| ! | ACCAAACAGATATATAACTT+TGG | - | chr4_2:57188262-57188281 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | - | chr4_2:57188323-57188342 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | - | chr4_2:57188408-57188427 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | - | chr4_2:57188422-57188441 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | - | chr4_2:57188504-57188523 | None:intergenic | 25.0% |
| ! | CTAAAATGTCAAGTTTATGT+AGG | - | chr4_2:57188584-57188603 | None:intergenic | 25.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | - | chr4_2:57187989-57188008 | None:intergenic | 25.0% |
| ! | TCCAAAGTTATATATCTGTT+TGG | + | chr4_2:57188258-57188277 | Msa0609720:intron | 25.0% |
| ! | ACCAAACAGATATATAACTT+TGG | - | chr4_2:57188262-57188281 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | - | chr4_2:57188323-57188342 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | - | chr4_2:57188408-57188427 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | - | chr4_2:57188422-57188441 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | - | chr4_2:57188504-57188523 | None:intergenic | 25.0% |
| ! | CTAAAATGTCAAGTTTATGT+AGG | - | chr4_2:57188584-57188603 | None:intergenic | 25.0% |
| TTTGAATCTAACAAAACGTG+TGG | - | chr4_2:57187948-57187967 | None:intergenic | 30.0% | |
| TGACTTACAAAAATGTTGGA+AGG | - | chr4_2:57187985-57188004 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | + | chr4_2:57188098-57188117 | Msa0609720:CDS | 30.0% | |
| GTTTAACGACTATGTACTAA+CGG | - | chr4_2:57188482-57188501 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | - | chr4_2:57188505-57188524 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGA+AGG | + | chr4_2:57188627-57188646 | Msa0609720:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | - | chr4_2:57188695-57188714 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | + | chr4_2:57188694-57188713 | Msa0609720:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | + | chr4_2:57188820-57188839 | Msa0609720:CDS | 30.0% | |
| TTTGAATCTAACAAAACGTG+TGG | - | chr4_2:57187948-57187967 | None:intergenic | 30.0% | |
| TGACTTACAAAAATGTTGGA+AGG | - | chr4_2:57187985-57188004 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | + | chr4_2:57188098-57188117 | Msa0609720:CDS | 30.0% | |
| GTTTAACGACTATGTACTAA+CGG | - | chr4_2:57188482-57188501 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | - | chr4_2:57188505-57188524 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGA+AGG | + | chr4_2:57188627-57188646 | Msa0609720:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | - | chr4_2:57188695-57188714 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | + | chr4_2:57188694-57188713 | Msa0609720:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | + | chr4_2:57188820-57188839 | Msa0609720:CDS | 30.0% | |
| AGAGTGAACAAGTATCAGAA+TGG | - | chr4_2:57187717-57187736 | None:intergenic | 35.0% | |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | - | chr4_2:57187825-57187844 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | + | chr4_2:57187825-57187844 | Msa0609720:CDS | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | - | chr4_2:57188105-57188124 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | - | chr4_2:57188145-57188164 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | + | chr4_2:57188144-57188163 | Msa0609720:CDS | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | - | chr4_2:57188157-57188176 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | + | chr4_2:57188165-57188184 | Msa0609720:CDS | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | + | chr4_2:57188175-57188194 | Msa0609720:CDS | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | + | chr4_2:57188190-57188209 | Msa0609720:CDS | 35.0% |
| !! | TCTGTTTGGTTAATGGGTTA+AGG | + | chr4_2:57188272-57188291 | Msa0609720:intron | 35.0% |
| !! | CTGTTTGGTTAATGGGTTAA+GGG | + | chr4_2:57188273-57188292 | Msa0609720:intron | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | + | chr4_2:57188274-57188293 | Msa0609720:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | - | chr4_2:57188557-57188576 | None:intergenic | 35.0% | |
| GAACTTGTGAAGGTTATGTT+TGG | + | chr4_2:57188637-57188656 | Msa0609720:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | + | chr4_2:57188652-57188671 | Msa0609720:CDS | 35.0% |
| AGAGTGAACAAGTATCAGAA+TGG | - | chr4_2:57187717-57187736 | None:intergenic | 35.0% | |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | - | chr4_2:57187825-57187844 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | + | chr4_2:57187825-57187844 | Msa0609720:CDS | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | - | chr4_2:57188105-57188124 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | - | chr4_2:57188145-57188164 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | + | chr4_2:57188144-57188163 | Msa0609720:CDS | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | - | chr4_2:57188157-57188176 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | + | chr4_2:57188165-57188184 | Msa0609720:CDS | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | + | chr4_2:57188175-57188194 | Msa0609720:CDS | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | + | chr4_2:57188190-57188209 | Msa0609720:CDS | 35.0% |
| !! | TCTGTTTGGTTAATGGGTTA+AGG | + | chr4_2:57188272-57188291 | Msa0609720:intron | 35.0% |
| !! | CTGTTTGGTTAATGGGTTAA+GGG | + | chr4_2:57188273-57188292 | Msa0609720:intron | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | + | chr4_2:57188274-57188293 | Msa0609720:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | - | chr4_2:57188557-57188576 | None:intergenic | 35.0% | |
| GAACTTGTGAAGGTTATGTT+TGG | + | chr4_2:57188637-57188656 | Msa0609720:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | + | chr4_2:57188652-57188671 | Msa0609720:CDS | 35.0% |
| AAGGTGAGTACAATTGAGAG+CGG | + | chr4_2:57187776-57187795 | Msa0609720:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | + | chr4_2:57187791-57187810 | Msa0609720:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | + | chr4_2:57187813-57187832 | Msa0609720:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | - | chr4_2:57187826-57187845 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | + | chr4_2:57187824-57187843 | Msa0609720:CDS | 40.0% | |
| GAAGAGAGGGCTTTCAATAA+TGG | + | chr4_2:57187838-57187857 | Msa0609720:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | + | chr4_2:57187895-57187914 | Msa0609720:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | + | chr4_2:57187896-57187915 | Msa0609720:CDS | 40.0% |
| CTAACAAAACGTGTGGCAAA+AGG | - | chr4_2:57187941-57187960 | None:intergenic | 40.0% | |
| TAACGACTATGTACTAACGG+TGG | - | chr4_2:57188479-57188498 | None:intergenic | 40.0% | |
| ! | AAAACTCGGTGACAAATAGC+AGG | - | chr4_2:57188515-57188534 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | + | chr4_2:57188540-57188559 | Msa0609720:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | + | chr4_2:57188551-57188570 | Msa0609720:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | - | chr4_2:57188724-57188743 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | - | chr4_2:57188731-57188750 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | - | chr4_2:57188742-57188761 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | + | chr4_2:57188748-57188767 | Msa0609720:CDS | 40.0% | |
| AAGGTGAGTACAATTGAGAG+CGG | + | chr4_2:57187776-57187795 | Msa0609720:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | + | chr4_2:57187791-57187810 | Msa0609720:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | + | chr4_2:57187813-57187832 | Msa0609720:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | - | chr4_2:57187826-57187845 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | + | chr4_2:57187824-57187843 | Msa0609720:CDS | 40.0% | |
| GAAGAGAGGGCTTTCAATAA+TGG | + | chr4_2:57187838-57187857 | Msa0609720:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | + | chr4_2:57187895-57187914 | Msa0609720:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | + | chr4_2:57187896-57187915 | Msa0609720:CDS | 40.0% |
| CTAACAAAACGTGTGGCAAA+AGG | - | chr4_2:57187941-57187960 | None:intergenic | 40.0% | |
| TAACGACTATGTACTAACGG+TGG | - | chr4_2:57188479-57188498 | None:intergenic | 40.0% | |
| ! | AAAACTCGGTGACAAATAGC+AGG | - | chr4_2:57188515-57188534 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | + | chr4_2:57188540-57188559 | Msa0609720:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | + | chr4_2:57188551-57188570 | Msa0609720:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | - | chr4_2:57188724-57188743 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | - | chr4_2:57188731-57188750 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | - | chr4_2:57188742-57188761 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | + | chr4_2:57188748-57188767 | Msa0609720:CDS | 40.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | + | chr4_2:57187812-57187831 | Msa0609720:CDS | 45.0% |
| TTTGCAGCTATGAGCACACT+TGG | + | chr4_2:57187878-57187897 | Msa0609720:CDS | 45.0% | |
| CTAAAGCTAGTCCTTAGAGG+TGG | + | chr4_2:57188543-57188562 | Msa0609720:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | + | chr4_2:57188713-57188732 | Msa0609720:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | - | chr4_2:57188725-57188744 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | - | chr4_2:57188750-57188769 | None:intergenic | 45.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | + | chr4_2:57187812-57187831 | Msa0609720:CDS | 45.0% |
| TTTGCAGCTATGAGCACACT+TGG | + | chr4_2:57187878-57187897 | Msa0609720:CDS | 45.0% | |
| CTAAAGCTAGTCCTTAGAGG+TGG | + | chr4_2:57188543-57188562 | Msa0609720:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | + | chr4_2:57188713-57188732 | Msa0609720:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | - | chr4_2:57188725-57188744 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | - | chr4_2:57188750-57188769 | None:intergenic | 45.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | - | chr4_2:57188782-57188801 | None:intergenic | 50.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | - | chr4_2:57188782-57188801 | None:intergenic | 50.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | - | chr4_2:57188680-57188699 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | + | chr4_2:57188760-57188779 | Msa0609720:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | + | chr4_2:57188772-57188791 | Msa0609720:CDS | 55.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | - | chr4_2:57188680-57188699 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | + | chr4_2:57188760-57188779 | Msa0609720:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | + | chr4_2:57188772-57188791 | Msa0609720:CDS | 55.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | - | chr4_2:57188764-57188783 | None:intergenic | 60.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | - | chr4_2:57188764-57188783 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 57187707 | 57188876 | 57187707 | ID=Msa0609720;Name=Msa0609720 |
| chr4_2 | mRNA | 57187707 | 57188876 | 57187707 | ID=Msa0609720-mRNA-1;Parent=Msa0609720;Name=Msa0609720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|213 |
| chr4_2 | exon | 57187707 | 57187996 | 57187707 | ID=Msa0609720-mRNA-1:exon:14832;Parent=Msa0609720-mRNA-1 |
| chr4_2 | exon | 57188088 | 57188211 | 57188088 | ID=Msa0609720-mRNA-1:exon:14833;Parent=Msa0609720-mRNA-1 |
| chr4_2 | exon | 57188649 | 57188876 | 57188649 | ID=Msa0609720-mRNA-1:exon:14834;Parent=Msa0609720-mRNA-1 |
| chr4_2 | CDS | 57187707 | 57187996 | 57187707 | ID=Msa0609720-mRNA-1:cds;Parent=Msa0609720-mRNA-1 |
| chr4_2 | CDS | 57188088 | 57188211 | 57188088 | ID=Msa0609720-mRNA-1:cds;Parent=Msa0609720-mRNA-1 |
| chr4_2 | CDS | 57188649 | 57188876 | 57188649 | ID=Msa0609720-mRNA-1:cds;Parent=Msa0609720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
