Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650440 | G7JG80.1 | 97.354 | 189 | 5 | 0 | 1 | 189 | 1 | 189 | 1.36e-128 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650440 | sp|G7JG80|CASP2_MEDTR | 97.354 | 189 | 5 | 0 | 1 | 189 | 1 | 189 | 1.70e-131 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0650440 | 0.823777 | 1.153809e-53 | -8.615850e-47 |
| Msa0024290 | Msa0650440 | 0.828111 | 1.078098e-54 | -8.615850e-47 |
| Msa0048950 | Msa0650440 | 0.813627 | 2.326131e-51 | -8.615850e-47 |
| Msa0059880 | Msa0650440 | 0.810633 | 1.045848e-50 | -8.615850e-47 |
| Msa0072030 | Msa0650440 | 0.813545 | 2.424145e-51 | -8.615850e-47 |
| Msa0074620 | Msa0650440 | 0.811107 | 8.261133e-51 | -8.615850e-47 |
| Msa0080010 | Msa0650440 | 0.805379 | 1.373506e-49 | -8.615850e-47 |
| Msa0605470 | Msa0650440 | 0.810157 | 1.325147e-50 | -8.615850e-47 |
| Msa0609720 | Msa0650440 | 0.928482 | 2.712174e-92 | -8.615850e-47 |
| Msa0631700 | Msa0650440 | 0.863328 | 2.692637e-64 | -8.615850e-47 |
| Msa0640290 | Msa0650440 | 0.807886 | 4.061039e-50 | -8.615850e-47 |
| Msa0650310 | Msa0650440 | 0.989113 | 9.575421e-177 | -8.615850e-47 |
| Msa0650440 | Msa0670360 | 0.835383 | 1.732100e-56 | -8.615850e-47 |
| Msa0650440 | Msa0672090 | 0.809503 | 1.832069e-50 | -8.615850e-47 |
| Msa0650440 | Msa0677590 | -0.810200 | 1.297189e-50 | -8.615850e-47 |
| Msa0650440 | Msa0678620 | 0.810807 | 9.591202e-51 | -8.615850e-47 |
| Msa0650440 | Msa0692310 | 0.924883 | 3.878318e-90 | -8.615850e-47 |
| Msa0650440 | Msa0711240 | 0.807960 | 3.915339e-50 | -8.615850e-47 |
| Msa0650440 | Msa0777210 | 0.802499 | 5.449676e-49 | -8.615850e-47 |
| Msa0650440 | Msa0801860 | 0.812674 | 3.764981e-51 | -8.615850e-47 |
| Msa0650440 | Msa0814160 | 0.800279 | 1.552988e-48 | -8.615850e-47 |
| Msa0650440 | Msa0814350 | 0.804450 | 2.147452e-49 | -8.615850e-47 |
| Msa0650440 | Msa0841670 | 0.802458 | 5.555933e-49 | -8.615850e-47 |
| Msa0650440 | Msa0890210 | 0.808855 | 2.522702e-50 | -8.615850e-47 |
| Msa0650440 | Msa0893840 | 0.803223 | 3.861719e-49 | -8.615850e-47 |
| Msa0650440 | Msa0896920 | 0.813753 | 2.182072e-51 | -8.615850e-47 |
| Msa0650440 | Msa0910830 | 0.802528 | 5.375692e-49 | -8.615850e-47 |
| Msa0650440 | Msa0941120 | 0.803460 | 3.449237e-49 | -8.615850e-47 |
| Msa0650440 | Msa1021620 | 0.804527 | 2.069418e-49 | -8.615850e-47 |
| Msa0650440 | Msa1022490 | 0.809235 | 2.091622e-50 | -8.615850e-47 |
| Msa0650440 | Msa1022510 | 0.818948 | 1.501320e-52 | -8.615850e-47 |
| Msa0650440 | Msa1041630 | 0.802126 | 6.502816e-49 | -8.615850e-47 |
| Msa0650440 | Msa1061670 | 0.837456 | 5.143165e-57 | -8.615850e-47 |
| Msa0650440 | Msa1081610 | 0.803168 | 3.964958e-49 | -8.615850e-47 |
| Msa0650440 | Msa1104960 | 0.809511 | 1.824925e-50 | -8.615850e-47 |
| Msa0650440 | Msa1106680 | 0.803303 | 3.717739e-49 | -8.615850e-47 |
| Msa0650440 | Msa1106960 | 0.835764 | 1.387769e-56 | -8.615850e-47 |
| Msa0650440 | Msa1107250 | 0.806696 | 7.255878e-50 | -8.615850e-47 |
| Msa0650440 | Msa1109540 | 0.822235 | 2.639838e-53 | -8.615850e-47 |
| Msa0650440 | Msa1109880 | 0.800785 | 1.224718e-48 | -8.615850e-47 |
| Msa0650440 | Msa1109890 | 0.809028 | 2.316062e-50 | -8.615850e-47 |
| Msa0650440 | Msa1150740 | 0.804593 | 2.005511e-49 | -8.615850e-47 |
| Msa0650440 | Msa1174450 | 0.813024 | 3.155840e-51 | -8.615850e-47 |
| Msa0650440 | Msa1314810 | 0.800512 | 1.391773e-48 | -8.615850e-47 |
| Msa0650440 | Msa1355340 | 0.813676 | 2.268785e-51 | -8.615850e-47 |
| Msa0650440 | Msa1357750 | 0.822004 | 2.987170e-53 | -8.615850e-47 |
| Msa0650440 | Msa1357840 | 0.800480 | 1.412881e-48 | -8.615850e-47 |
| Msa0650440 | Msa1376520 | 0.804908 | 1.723665e-49 | -8.615850e-47 |
| Msa0650440 | Msa1411550 | 0.800866 | 1.178967e-48 | -8.615850e-47 |
| Msa0143710 | Msa0650440 | 0.805029 | 1.625719e-49 | -8.615850e-47 |
| Msa0150910 | Msa0650440 | 0.812154 | 4.889620e-51 | -8.615850e-47 |
| Msa0154750 | Msa0650440 | 0.805268 | 1.448721e-49 | -8.615850e-47 |
| Msa0163340 | Msa0650440 | 0.809054 | 2.286592e-50 | -8.615850e-47 |
| Msa0163370 | Msa0650440 | 0.813129 | 2.992215e-51 | -8.615850e-47 |
| Msa0170990 | Msa0650440 | 0.807977 | 3.883814e-50 | -8.615850e-47 |
| Msa0177550 | Msa0650440 | 0.834956 | 2.220787e-56 | -8.615850e-47 |
| Msa0366510 | Msa0650440 | 0.834725 | 2.538551e-56 | -8.615850e-47 |
| Msa0367350 | Msa0650440 | 0.802697 | 4.961001e-49 | -8.615850e-47 |
| Msa0374040 | Msa0650440 | 0.826757 | 2.277121e-54 | -8.615850e-47 |
| Msa0396700 | Msa0650440 | 0.818273 | 2.136784e-52 | -8.615850e-47 |
| Msa0414480 | Msa0650440 | 0.824076 | 9.818512e-54 | -8.615850e-47 |
| Msa0464310 | Msa0650440 | 0.817980 | 2.488509e-52 | -8.615850e-47 |
| Msa0259110 | Msa0650440 | 0.843844 | 1.091053e-58 | -8.615850e-47 |
| Msa0259300 | Msa0650440 | 0.841439 | 4.749356e-58 | -8.615850e-47 |
| Msa0316600 | Msa0650440 | 0.809296 | 2.030059e-50 | -8.615850e-47 |
| Msa0342130 | Msa0650440 | 0.837913 | 3.925270e-57 | -8.615850e-47 |
| Msa0342160 | Msa0650440 | 0.822088 | 2.855411e-53 | -8.615850e-47 |
| Msa0491800 | Msa0650440 | 0.819560 | 1.089287e-52 | -8.615850e-47 |
| Msa0515130 | Msa0650440 | 0.833428 | 5.362873e-56 | -8.615850e-47 |
| Msa0515150 | Msa0650440 | 0.800547 | 1.369041e-48 | -8.615850e-47 |
| Msa0535570 | Msa0650440 | 0.855467 | 6.187234e-62 | -8.615850e-47 |
| Msa0543740 | Msa0650440 | 0.817493 | 3.204824e-52 | -8.615850e-47 |
| Msa0591490 | Msa0650440 | 0.820934 | 5.276264e-53 | -8.615850e-47 |
| Msa0599600 | Msa0650440 | 0.808242 | 3.410260e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650440 | MtrunA17_Chr4g0042551 | 97.354 | 189 | 5 | 0 | 1 | 189 | 31 | 219 | 2.89e-132 | 369 |
| Msa0650440 | MtrunA17_Chr5g0417761 | 65.775 | 187 | 63 | 1 | 1 | 187 | 1 | 186 | 7.60e-79 | 233 |
| Msa0650440 | MtrunA17_Chr7g0217691 | 56.216 | 185 | 79 | 1 | 2 | 186 | 3 | 185 | 4.09e-70 | 211 |
| Msa0650440 | MtrunA17_Chr1g0178181 | 42.408 | 191 | 104 | 1 | 2 | 186 | 4 | 194 | 5.15e-40 | 134 |
| Msa0650440 | MtrunA17_Chr2g0321671 | 42.614 | 176 | 101 | 0 | 12 | 187 | 45 | 220 | 5.83e-38 | 130 |
| Msa0650440 | MtrunA17_Chr1g0178191 | 43.386 | 189 | 102 | 1 | 3 | 186 | 5 | 193 | 1.13e-37 | 129 |
| Msa0650440 | MtrunA17_Chr1g0178161 | 41.618 | 173 | 101 | 0 | 14 | 186 | 23 | 195 | 2.78e-37 | 127 |
| Msa0650440 | MtrunA17_Chr4g0021111 | 36.025 | 161 | 90 | 4 | 22 | 180 | 1 | 150 | 1.68e-18 | 78.6 |
| Msa0650440 | MtrunA17_Chr7g0268681 | 30.519 | 154 | 102 | 3 | 27 | 177 | 27 | 178 | 2.22e-18 | 79.0 |
| Msa0650440 | MtrunA17_Chr7g0251531 | 32.099 | 162 | 105 | 3 | 10 | 169 | 11 | 169 | 9.47e-15 | 68.9 |
| Msa0650440 | MtrunA17_Chr4g0066721 | 27.273 | 143 | 95 | 2 | 30 | 164 | 34 | 175 | 2.11e-14 | 68.6 |
| Msa0650440 | MtrunA17_Chr8g0381001 | 30.818 | 159 | 95 | 4 | 33 | 180 | 30 | 184 | 2.65e-13 | 65.5 |
| Msa0650440 | MtrunA17_Chr4g0066711 | 32.121 | 165 | 96 | 8 | 27 | 184 | 26 | 181 | 1.38e-12 | 63.2 |
| Msa0650440 | MtrunA17_Chr5g0433491 | 33.621 | 116 | 74 | 2 | 66 | 180 | 68 | 181 | 2.91e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650440 | AT5G15290.1 | 56.548 | 168 | 70 | 2 | 1 | 167 | 1 | 166 | 8.41e-63 | 192 |
| Msa0650440 | AT1G14160.1 | 47.368 | 190 | 95 | 1 | 2 | 186 | 19 | 208 | 3.94e-60 | 186 |
| Msa0650440 | AT2G27370.1 | 48.503 | 167 | 86 | 0 | 21 | 187 | 54 | 220 | 3.39e-48 | 157 |
| Msa0650440 | AT2G36100.1 | 44.767 | 172 | 95 | 0 | 15 | 186 | 34 | 205 | 2.28e-42 | 141 |
| Msa0650440 | AT5G06200.1 | 50.602 | 166 | 82 | 0 | 21 | 186 | 36 | 201 | 1.26e-41 | 139 |
| Msa0650440 | AT3G11550.1 | 46.199 | 171 | 92 | 0 | 16 | 186 | 33 | 203 | 3.39e-38 | 130 |
| Msa0650440 | AT4G15620.1 | 30.645 | 186 | 109 | 6 | 10 | 184 | 13 | 189 | 6.53e-19 | 80.5 |
| Msa0650440 | AT4G15630.1 | 28.125 | 192 | 118 | 6 | 4 | 184 | 7 | 189 | 4.05e-17 | 75.9 |
| Msa0650440 | AT1G03700.1 | 32.895 | 152 | 87 | 3 | 32 | 180 | 12 | 151 | 6.15e-17 | 74.7 |
| Msa0650440 | AT4G03540.1 | 36.036 | 111 | 58 | 2 | 62 | 169 | 40 | 140 | 2.84e-14 | 67.8 |
| Msa0650440 | AT3G06390.1 | 28.467 | 137 | 93 | 2 | 29 | 160 | 37 | 173 | 2.04e-11 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCTGCGGACGCATTTC+CGG | 0.160143 | 4_3:-57422050 | Msa0650440:CDS |
| ACTTGGAAGTGCATTGAGTA+TGG | 0.314679 | 4_3:-57422911 | Msa0650440:CDS |
| GTCTCCACTATTTCAATGCT+TGG | 0.317947 | 4_3:+57421950 | None:intergenic |
| ATGTTTGGTCTTCTTACATC+TGG | 0.318237 | 4_3:-57422158 | Msa0650440:CDS |
| GAAGAGAGGGCTTTCAATAA+TGG | 0.375320 | 4_3:-57422968 | Msa0650440:CDS |
| TGTCATTCTTCCACATTGTA+AGG | 0.389122 | 4_3:-57422662 | Msa0650440:CDS |
| GGACTATTTCAGTGAAAAGT+AGG | 0.406947 | 4_3:-57422641 | Msa0650440:CDS |
| CGCATTTCCGGTTCACTCGT+TGG | 0.423380 | 4_3:-57422038 | Msa0650440:CDS |
| ATGATACTTATTCTCATGTC+AGG | 0.427186 | 4_3:-57421990 | Msa0650440:CDS |
| GTAGCCACATACAATAGAAT+TGG | 0.428984 | 4_3:+57422704 | None:intergenic |
| GAACTTGTGTAGGTTATGTT+TGG | 0.432401 | 4_3:-57422173 | Msa0650440:intron |
| ATTGTTTATGTAGCTCACTA+TGG | 0.441275 | 4_3:-57422116 | Msa0650440:CDS |
| GGAGCATCATCCCAAAGAAA+AGG | 0.450818 | 4_3:-57422994 | Msa0650440:CDS |
| TCTCTTGGTCTTTCTTGATA+CGG | 0.450983 | 4_3:-57422616 | Msa0650440:intron |
| ATGGAAATCCCAGTGCCAAT+TGG | 0.476221 | 4_3:-57422097 | Msa0650440:CDS |
| GAAAGAGCCAACGAGTGAAC+CGG | 0.477626 | 4_3:+57422031 | None:intergenic |
| AGTGAAAAGTAGGATTCTCT+TGG | 0.484716 | 4_3:-57422631 | Msa0650440:CDS |
| GAAAGGAAACCAATTGGCAC+TGG | 0.490083 | 4_3:+57422088 | None:intergenic |
| CTAACAAAACGTGTAGCAAA+AGG | 0.493085 | 4_3:+57422868 | None:intergenic |
| CGCAGAAGGAGTTGTATTGT+TGG | 0.495681 | 4_3:+57422063 | None:intergenic |
| TTGGCAGAAAGGAAACCAAT+TGG | 0.505370 | 4_3:+57422082 | None:intergenic |
| GAGAGCGGTGAAATTTCAAA+AGG | 0.513548 | 4_3:-57423015 | Msa0650440:CDS |
| GAGTTGTATTGTTGGCAGAA+AGG | 0.513691 | 4_3:+57422071 | None:intergenic |
| GAGCATCATCCCAAAGAAAA+GGG | 0.519493 | 4_3:-57422993 | Msa0650440:CDS |
| AACAATGGCTGCTGCTGCTG+AGG | 0.545248 | 4_3:+57422133 | None:intergenic |
| ACCGGAAATGCGTCCGCAGA+AGG | 0.551171 | 4_3:+57422049 | None:intergenic |
| TTTGCAGCTATAAGCACACT+TGG | 0.563238 | 4_3:-57422928 | Msa0650440:CDS |
| TTACAATGTGGAAGAATGAC+AGG | 0.568556 | 4_3:+57422664 | None:intergenic |
| CTTGGAAGTGCATTGAGTAT+GGG | 0.582334 | 4_3:-57422910 | Msa0650440:CDS |
| AAAGAAAAGGGATGAAGAGA+GGG | 0.589149 | 4_3:-57422981 | Msa0650440:CDS |
| ACTACCAATTCTATTGTATG+TGG | 0.592296 | 4_3:-57422708 | Msa0650440:CDS |
| AAAGGAAACCAATTGGCACT+GGG | 0.608159 | 4_3:+57422089 | None:intergenic |
| CAAAGAAAAGGGATGAAGAG+AGG | 0.610616 | 4_3:-57422982 | Msa0650440:CDS |
| CAACAATACAACTCCTTCTG+CGG | 0.614837 | 4_3:-57422062 | Msa0650440:CDS |
| CTGAAATAGTCCTTACAATG+TGG | 0.618479 | 4_3:+57422652 | None:intergenic |
| ATAGTGAGCTACATAAACAA+TGG | 0.652493 | 4_3:+57422118 | None:intergenic |
| AAGGTGAGTACAATTGAGAG+CGG | 0.725157 | 4_3:-57423030 | Msa0650440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATTTGATTAATTTC+AGG | - | chr4_3:57422255-57422274 | Msa0650440:intron | 15.0% |
| !! | TTATATATATGTTTGGTTAA+TGG | - | chr4_3:57422453-57422472 | Msa0650440:intron | 15.0% |
| !! | TATATATATGTTTGGTTAAT+GGG | - | chr4_3:57422454-57422473 | Msa0650440:intron | 15.0% |
| !! | ATTCATATTTGATTAATTTC+AGG | - | chr4_3:57422255-57422274 | Msa0650440:intron | 15.0% |
| !! | TTATATATATGTTTGGTTAA+TGG | - | chr4_3:57422453-57422472 | Msa0650440:intron | 15.0% |
| !! | TATATATATGTTTGGTTAAT+GGG | - | chr4_3:57422454-57422473 | Msa0650440:intron | 15.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | + | chr4_3:57422217-57422236 | None:intergenic | 20.0% |
| !! | TAGAAAATAAAAGAAGAAAC+AGG | + | chr4_3:57422411-57422430 | None:intergenic | 20.0% |
| !! | TCCAAAGTTATATATATGTT+TGG | - | chr4_3:57422446-57422465 | Msa0650440:intron | 20.0% |
| !! | ACCAAACATATATATAACTT+TGG | + | chr4_3:57422450-57422469 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | + | chr4_3:57422560-57422579 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | + | chr4_3:57422714-57422733 | None:intergenic | 20.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | + | chr4_3:57422217-57422236 | None:intergenic | 20.0% |
| !! | TAGAAAATAAAAGAAGAAAC+AGG | + | chr4_3:57422411-57422430 | None:intergenic | 20.0% |
| !! | TCCAAAGTTATATATATGTT+TGG | - | chr4_3:57422446-57422465 | Msa0650440:intron | 20.0% |
| !! | ACCAAACATATATATAACTT+TGG | + | chr4_3:57422450-57422469 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | + | chr4_3:57422560-57422579 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | + | chr4_3:57422714-57422733 | None:intergenic | 20.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | + | chr4_3:57422178-57422197 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | + | chr4_3:57422511-57422530 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | + | chr4_3:57422596-57422615 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | + | chr4_3:57422610-57422629 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | + | chr4_3:57422689-57422708 | None:intergenic | 25.0% |
| ! | CTAAAATGTCAAGTTTATGT+AGG | + | chr4_3:57422769-57422788 | None:intergenic | 25.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | + | chr4_3:57422178-57422197 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | + | chr4_3:57422511-57422530 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | + | chr4_3:57422596-57422615 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | + | chr4_3:57422610-57422629 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | + | chr4_3:57422689-57422708 | None:intergenic | 25.0% |
| ! | CTAAAATGTCAAGTTTATGT+AGG | + | chr4_3:57422769-57422788 | None:intergenic | 25.0% |
| TGACTTACAAAAATGTTGGA+AGG | + | chr4_3:57422174-57422193 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | - | chr4_3:57422287-57422306 | Msa0650440:intron | 30.0% | |
| !! | TATGTTTGGTTAATGGGTTA+AGG | - | chr4_3:57422460-57422479 | Msa0650440:intron | 30.0% |
| !! | ATGTTTGGTTAATGGGTTAA+GGG | - | chr4_3:57422461-57422480 | Msa0650440:intron | 30.0% |
| GTTTAACGACTATGTACTAA+CGG | + | chr4_3:57422667-57422686 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | + | chr4_3:57422690-57422709 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGT+AGG | - | chr4_3:57422812-57422831 | Msa0650440:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | + | chr4_3:57422880-57422899 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | - | chr4_3:57422879-57422898 | Msa0650440:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | - | chr4_3:57423005-57423024 | Msa0650440:CDS | 30.0% | |
| TGACTTACAAAAATGTTGGA+AGG | + | chr4_3:57422174-57422193 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | - | chr4_3:57422287-57422306 | Msa0650440:intron | 30.0% | |
| !! | TATGTTTGGTTAATGGGTTA+AGG | - | chr4_3:57422460-57422479 | Msa0650440:intron | 30.0% |
| !! | ATGTTTGGTTAATGGGTTAA+GGG | - | chr4_3:57422461-57422480 | Msa0650440:intron | 30.0% |
| GTTTAACGACTATGTACTAA+CGG | + | chr4_3:57422667-57422686 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | + | chr4_3:57422690-57422709 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGT+AGG | - | chr4_3:57422812-57422831 | Msa0650440:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | + | chr4_3:57422880-57422899 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | - | chr4_3:57422879-57422898 | Msa0650440:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | - | chr4_3:57423005-57423024 | Msa0650440:CDS | 30.0% | |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | + | chr4_3:57422014-57422033 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | - | chr4_3:57422014-57422033 | Msa0650440:CDS | 35.0% | |
| CTAACAAAACGTGTAGCAAA+AGG | + | chr4_3:57422130-57422149 | None:intergenic | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | + | chr4_3:57422294-57422313 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | + | chr4_3:57422334-57422353 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | - | chr4_3:57422333-57422352 | Msa0650440:intron | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | + | chr4_3:57422346-57422365 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | - | chr4_3:57422354-57422373 | Msa0650440:intron | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | - | chr4_3:57422364-57422383 | Msa0650440:intron | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | - | chr4_3:57422379-57422398 | Msa0650440:intron | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | - | chr4_3:57422462-57422481 | Msa0650440:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | + | chr4_3:57422742-57422761 | None:intergenic | 35.0% | |
| GAACTTGTGTAGGTTATGTT+TGG | - | chr4_3:57422822-57422841 | Msa0650440:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | - | chr4_3:57422837-57422856 | Msa0650440:CDS | 35.0% |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | + | chr4_3:57422014-57422033 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | - | chr4_3:57422014-57422033 | Msa0650440:CDS | 35.0% | |
| CTAACAAAACGTGTAGCAAA+AGG | + | chr4_3:57422130-57422149 | None:intergenic | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | + | chr4_3:57422294-57422313 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | + | chr4_3:57422334-57422353 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | - | chr4_3:57422333-57422352 | Msa0650440:intron | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | + | chr4_3:57422346-57422365 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | - | chr4_3:57422354-57422373 | Msa0650440:intron | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | - | chr4_3:57422364-57422383 | Msa0650440:intron | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | - | chr4_3:57422379-57422398 | Msa0650440:intron | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | - | chr4_3:57422462-57422481 | Msa0650440:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | + | chr4_3:57422742-57422761 | None:intergenic | 35.0% | |
| GAACTTGTGTAGGTTATGTT+TGG | - | chr4_3:57422822-57422841 | Msa0650440:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | - | chr4_3:57422837-57422856 | Msa0650440:CDS | 35.0% |
| AAGGTGAGTACAATTGAGAG+CGG | - | chr4_3:57421965-57421984 | Msa0650440:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | - | chr4_3:57421980-57421999 | Msa0650440:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | - | chr4_3:57422002-57422021 | Msa0650440:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | + | chr4_3:57422015-57422034 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | - | chr4_3:57422013-57422032 | Msa0650440:CDS | 40.0% | |
| GAAGAGAGGGCTTTCAATAA+TGG | - | chr4_3:57422027-57422046 | Msa0650440:CDS | 40.0% | |
| TTTGCAGCTATAAGCACACT+TGG | - | chr4_3:57422067-57422086 | Msa0650440:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | - | chr4_3:57422084-57422103 | Msa0650440:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | - | chr4_3:57422085-57422104 | Msa0650440:CDS | 40.0% |
| ! | AAAACTCGGTGACAAATAGC+AGG | + | chr4_3:57422700-57422719 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | - | chr4_3:57422725-57422744 | Msa0650440:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | - | chr4_3:57422736-57422755 | Msa0650440:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | + | chr4_3:57422909-57422928 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | + | chr4_3:57422916-57422935 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | + | chr4_3:57422927-57422946 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | - | chr4_3:57422933-57422952 | Msa0650440:CDS | 40.0% | |
| AAGGTGAGTACAATTGAGAG+CGG | - | chr4_3:57421965-57421984 | Msa0650440:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | - | chr4_3:57421980-57421999 | Msa0650440:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | - | chr4_3:57422002-57422021 | Msa0650440:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | + | chr4_3:57422015-57422034 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | - | chr4_3:57422013-57422032 | Msa0650440:CDS | 40.0% | |
| GAAGAGAGGGCTTTCAATAA+TGG | - | chr4_3:57422027-57422046 | Msa0650440:CDS | 40.0% | |
| TTTGCAGCTATAAGCACACT+TGG | - | chr4_3:57422067-57422086 | Msa0650440:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | - | chr4_3:57422084-57422103 | Msa0650440:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | - | chr4_3:57422085-57422104 | Msa0650440:CDS | 40.0% |
| ! | AAAACTCGGTGACAAATAGC+AGG | + | chr4_3:57422700-57422719 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | - | chr4_3:57422725-57422744 | Msa0650440:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | - | chr4_3:57422736-57422755 | Msa0650440:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | + | chr4_3:57422909-57422928 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | + | chr4_3:57422916-57422935 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | + | chr4_3:57422927-57422946 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | - | chr4_3:57422933-57422952 | Msa0650440:CDS | 40.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | - | chr4_3:57422001-57422020 | Msa0650440:CDS | 45.0% |
| CTAAAGCTAGTCCTTAGAGG+TGG | - | chr4_3:57422728-57422747 | Msa0650440:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | - | chr4_3:57422898-57422917 | Msa0650440:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | + | chr4_3:57422910-57422929 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | + | chr4_3:57422935-57422954 | None:intergenic | 45.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | - | chr4_3:57422001-57422020 | Msa0650440:CDS | 45.0% |
| CTAAAGCTAGTCCTTAGAGG+TGG | - | chr4_3:57422728-57422747 | Msa0650440:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | - | chr4_3:57422898-57422917 | Msa0650440:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | + | chr4_3:57422910-57422929 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | + | chr4_3:57422935-57422954 | None:intergenic | 45.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | + | chr4_3:57422967-57422986 | None:intergenic | 50.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | + | chr4_3:57422967-57422986 | None:intergenic | 50.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | + | chr4_3:57422865-57422884 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | - | chr4_3:57422945-57422964 | Msa0650440:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | - | chr4_3:57422957-57422976 | Msa0650440:CDS | 55.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | + | chr4_3:57422865-57422884 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | - | chr4_3:57422945-57422964 | Msa0650440:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | - | chr4_3:57422957-57422976 | Msa0650440:CDS | 55.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | + | chr4_3:57422949-57422968 | None:intergenic | 60.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | + | chr4_3:57422949-57422968 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 57421962 | 57423055 | 57421962 | ID=Msa0650440;Name=Msa0650440 |
| chr4_3 | mRNA | 57421962 | 57423055 | 57421962 | ID=Msa0650440-mRNA-1;Parent=Msa0650440;Name=Msa0650440-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|189 |
| chr4_3 | exon | 57422832 | 57423055 | 57422832 | ID=Msa0650440-mRNA-1:exon:15091;Parent=Msa0650440-mRNA-1 |
| chr4_3 | exon | 57422617 | 57422740 | 57422617 | ID=Msa0650440-mRNA-1:exon:15090;Parent=Msa0650440-mRNA-1 |
| chr4_3 | exon | 57421962 | 57422183 | 57421962 | ID=Msa0650440-mRNA-1:exon:15089;Parent=Msa0650440-mRNA-1 |
| chr4_3 | CDS | 57422832 | 57423055 | 57422832 | ID=Msa0650440-mRNA-1:cds;Parent=Msa0650440-mRNA-1 |
| chr4_3 | CDS | 57422617 | 57422740 | 57422617 | ID=Msa0650440-mRNA-1:cds;Parent=Msa0650440-mRNA-1 |
| chr4_3 | CDS | 57421962 | 57422183 | 57421962 | ID=Msa0650440-mRNA-1:cds;Parent=Msa0650440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
