Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650310 | G7JG80.1 | 97.354 | 189 | 5 | 0 | 1 | 189 | 1 | 189 | 1.36e-128 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650310 | sp|G7JG80|CASP2_MEDTR | 97.354 | 189 | 5 | 0 | 1 | 189 | 1 | 189 | 1.70e-131 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650310 | A0A396IGM0 | 97.354 | 189 | 5 | 0 | 1 | 189 | 31 | 219 | 1.50e-128 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0650310 | 0.831790 | 1.367193e-55 | -8.615850e-47 |
| Msa0024290 | Msa0650310 | 0.826001 | 3.447516e-54 | -8.615850e-47 |
| Msa0038010 | Msa0650310 | 0.806265 | 8.947146e-50 | -8.615850e-47 |
| Msa0048950 | Msa0650310 | 0.822480 | 2.315786e-53 | -8.615850e-47 |
| Msa0059880 | Msa0650310 | 0.820255 | 7.556596e-53 | -8.615850e-47 |
| Msa0069480 | Msa0650310 | 0.811755 | 5.973971e-51 | -8.615850e-47 |
| Msa0072030 | Msa0650310 | 0.825327 | 4.978807e-54 | -8.615850e-47 |
| Msa0074620 | Msa0650310 | 0.819605 | 1.063896e-52 | -8.615850e-47 |
| Msa0079830 | Msa0650310 | 0.800539 | 1.374447e-48 | -8.615850e-47 |
| Msa0080010 | Msa0650310 | 0.815830 | 7.561611e-52 | -8.615850e-47 |
| Msa0084150 | Msa0650310 | 0.805179 | 1.512217e-49 | -8.615850e-47 |
| Msa0120070 | Msa0650310 | 0.807446 | 5.033748e-50 | -8.615850e-47 |
| Msa0605470 | Msa0650310 | 0.815639 | 8.337696e-52 | -8.615850e-47 |
| Msa0609720 | Msa0650310 | 0.938168 | 1.050442e-98 | -8.615850e-47 |
| Msa0631700 | Msa0650310 | 0.872217 | 3.769054e-67 | -8.615850e-47 |
| Msa0640290 | Msa0650310 | 0.815697 | 8.094421e-52 | -8.615850e-47 |
| Msa0643840 | Msa0650310 | 0.804622 | 1.977261e-49 | -8.615850e-47 |
| Msa0645150 | Msa0650310 | 0.807498 | 4.908924e-50 | -8.615850e-47 |
| Msa0650310 | Msa0650440 | 0.989113 | 9.575421e-177 | -8.615850e-47 |
| Msa0650310 | Msa0670360 | 0.846796 | 1.734612e-59 | -8.615850e-47 |
| Msa0650310 | Msa0672090 | 0.807183 | 5.724806e-50 | -8.615850e-47 |
| Msa0650310 | Msa0677590 | -0.804369 | 2.233106e-49 | -8.615850e-47 |
| Msa0650310 | Msa0678620 | 0.820995 | 5.107599e-53 | -8.615850e-47 |
| Msa0650310 | Msa0692310 | 0.935304 | 1.046509e-96 | -8.615850e-47 |
| Msa0650310 | Msa0711240 | 0.818487 | 1.910901e-52 | -8.615850e-47 |
| Msa0650310 | Msa0727480 | 0.810375 | 1.189409e-50 | -8.615850e-47 |
| Msa0650310 | Msa0735340 | 0.805874 | 1.081001e-49 | -8.615850e-47 |
| Msa0650310 | Msa0768670 | 0.809504 | 1.831727e-50 | -8.615850e-47 |
| Msa0650310 | Msa0777210 | 0.811189 | 7.929540e-51 | -8.615850e-47 |
| Msa0650310 | Msa0777600 | 0.808519 | 2.976296e-50 | -8.615850e-47 |
| Msa0650310 | Msa0801860 | 0.819880 | 9.207466e-53 | -8.615850e-47 |
| Msa0650310 | Msa0814160 | 0.809519 | 1.817878e-50 | -8.615850e-47 |
| Msa0650310 | Msa0814230 | 0.809694 | 1.667080e-50 | -8.615850e-47 |
| Msa0650310 | Msa0814350 | 0.813200 | 2.887605e-51 | -8.615850e-47 |
| Msa0650310 | Msa0824860 | 0.807635 | 4.591514e-50 | -8.615850e-47 |
| Msa0650310 | Msa0841670 | 0.811713 | 6.100561e-51 | -8.615850e-47 |
| Msa0650310 | Msa0846180 | -0.802949 | 4.401331e-49 | -8.615850e-47 |
| Msa0650310 | Msa0855260 | 0.801953 | 7.059239e-49 | -8.615850e-47 |
| Msa0650310 | Msa0863840 | 0.803141 | 4.016016e-49 | -8.615850e-47 |
| Msa0650310 | Msa0890210 | 0.808609 | 2.848016e-50 | -8.615850e-47 |
| Msa0650310 | Msa0893840 | 0.817408 | 3.348818e-52 | -8.615850e-47 |
| Msa0650310 | Msa0896920 | 0.827093 | 1.892432e-54 | -8.615850e-47 |
| Msa0650310 | Msa0910830 | 0.811137 | 8.138597e-51 | -8.615850e-47 |
| Msa0650310 | Msa0941120 | 0.813803 | 2.127927e-51 | -8.615850e-47 |
| Msa0650310 | Msa0975950 | 0.800044 | 1.733654e-48 | -8.615850e-47 |
| Msa0650310 | Msa0985700 | 0.801050 | 1.080820e-48 | -8.615850e-47 |
| Msa0650310 | Msa1021620 | 0.816029 | 6.826477e-52 | -8.615850e-47 |
| Msa0650310 | Msa1022490 | 0.815549 | 8.731759e-52 | -8.615850e-47 |
| Msa0650310 | Msa1022510 | 0.829110 | 6.183572e-55 | -8.615850e-47 |
| Msa0650310 | Msa1041630 | 0.802548 | 5.325808e-49 | -8.615850e-47 |
| Msa0650310 | Msa1061670 | 0.847714 | 9.707356e-60 | -8.615850e-47 |
| Msa0650310 | Msa1081610 | 0.806596 | 7.617757e-50 | -8.615850e-47 |
| Msa0650310 | Msa1087380 | 0.800481 | 1.412389e-48 | -8.615850e-47 |
| Msa0650310 | Msa1104960 | 0.816646 | 4.967820e-52 | -8.615850e-47 |
| Msa0650310 | Msa1106680 | 0.814338 | 1.621022e-51 | -8.615850e-47 |
| Msa0650310 | Msa1106960 | 0.845397 | 4.166212e-59 | -8.615850e-47 |
| Msa0650310 | Msa1107250 | 0.814952 | 1.185333e-51 | -8.615850e-47 |
| Msa0650310 | Msa1109540 | 0.824239 | 8.990468e-54 | -8.615850e-47 |
| Msa0650310 | Msa1109880 | 0.813065 | 3.090446e-51 | -8.615850e-47 |
| Msa0650310 | Msa1109890 | 0.819116 | 1.374875e-52 | -8.615850e-47 |
| Msa0650310 | Msa1131070 | 0.801085 | 1.063422e-48 | -8.615850e-47 |
| Msa0650310 | Msa1138110 | 0.804948 | 1.690510e-49 | -8.615850e-47 |
| Msa0650310 | Msa1150740 | 0.812304 | 4.535416e-51 | -8.615850e-47 |
| Msa0650310 | Msa1174450 | 0.820234 | 7.638118e-53 | -8.615850e-47 |
| Msa0650310 | Msa1269050 | 0.802754 | 4.827656e-49 | -8.615850e-47 |
| Msa0650310 | Msa1314810 | 0.808464 | 3.057673e-50 | -8.615850e-47 |
| Msa0650310 | Msa1323120 | 0.804372 | 2.229590e-49 | -8.615850e-47 |
| Msa0650310 | Msa1341030 | 0.800669 | 1.293207e-48 | -8.615850e-47 |
| Msa0650310 | Msa1355340 | 0.821549 | 3.807038e-53 | -8.615850e-47 |
| Msa0650310 | Msa1357750 | 0.825313 | 5.017372e-54 | -8.615850e-47 |
| Msa0650310 | Msa1357840 | 0.805669 | 1.193778e-49 | -8.615850e-47 |
| Msa0650310 | Msa1365850 | 0.810710 | 1.006556e-50 | -8.615850e-47 |
| Msa0650310 | Msa1376520 | 0.804149 | 2.481322e-49 | -8.615850e-47 |
| Msa0650310 | Msa1395150 | 0.802737 | 4.868449e-49 | -8.615850e-47 |
| Msa0650310 | Msa1409600 | 0.802723 | 4.899892e-49 | -8.615850e-47 |
| Msa0650310 | Msa1411550 | 0.812924 | 3.318360e-51 | -8.615850e-47 |
| Msa0650310 | Msa1420020 | 0.809370 | 1.956397e-50 | -8.615850e-47 |
| Msa0129850 | Msa0650310 | 0.800866 | 1.178558e-48 | -8.615850e-47 |
| Msa0143710 | Msa0650310 | 0.800620 | 1.322945e-48 | -8.615850e-47 |
| Msa0150910 | Msa0650310 | 0.821223 | 4.525018e-53 | -8.615850e-47 |
| Msa0154750 | Msa0650310 | 0.812989 | 3.212281e-51 | -8.615850e-47 |
| Msa0163340 | Msa0650310 | 0.822488 | 2.306299e-53 | -8.615850e-47 |
| Msa0163370 | Msa0650310 | 0.822933 | 1.816916e-53 | -8.615850e-47 |
| Msa0170990 | Msa0650310 | 0.816054 | 6.737346e-52 | -8.615850e-47 |
| Msa0177550 | Msa0650310 | 0.844303 | 8.220387e-59 | -8.615850e-47 |
| Msa0191100 | Msa0650310 | 0.808713 | 2.705855e-50 | -8.615850e-47 |
| Msa0197020 | Msa0650310 | 0.802508 | 5.426961e-49 | -8.615850e-47 |
| Msa0209520 | Msa0650310 | 0.808436 | 3.100823e-50 | -8.615850e-47 |
| Msa0366510 | Msa0650310 | 0.844878 | 5.752986e-59 | -8.615850e-47 |
| Msa0374040 | Msa0650310 | 0.838420 | 2.907044e-57 | -8.615850e-47 |
| Msa0396700 | Msa0650310 | 0.827128 | 1.855886e-54 | -8.615850e-47 |
| Msa0414480 | Msa0650310 | 0.837705 | 4.439548e-57 | -8.615850e-47 |
| Msa0418160 | Msa0650310 | 0.809781 | 1.596889e-50 | -8.615850e-47 |
| Msa0423220 | Msa0650310 | 0.802021 | 6.835892e-49 | -8.615850e-47 |
| Msa0425950 | Msa0650310 | 0.810877 | 9.265007e-51 | -8.615850e-47 |
| Msa0426030 | Msa0650310 | 0.800440 | 1.439711e-48 | -8.615850e-47 |
| Msa0444250 | Msa0650310 | 0.802982 | 4.332008e-49 | -8.615850e-47 |
| Msa0464310 | Msa0650310 | 0.825988 | 3.471767e-54 | -8.615850e-47 |
| Msa0259110 | Msa0650310 | 0.850686 | 1.445858e-60 | -8.615850e-47 |
| Msa0259300 | Msa0650310 | 0.849721 | 2.696235e-60 | -8.615850e-47 |
| Msa0276580 | Msa0650310 | 0.802847 | 4.620279e-49 | -8.615850e-47 |
| Msa0316600 | Msa0650310 | 0.815067 | 1.117901e-51 | -8.615850e-47 |
| Msa0342130 | Msa0650310 | 0.844642 | 6.661395e-59 | -8.615850e-47 |
| Msa0342160 | Msa0650310 | 0.830554 | 2.750357e-55 | -8.615850e-47 |
| Msa0491800 | Msa0650310 | 0.828423 | 9.065829e-55 | -8.615850e-47 |
| Msa0515130 | Msa0650310 | 0.844002 | 9.899841e-59 | -8.615850e-47 |
| Msa0515150 | Msa0650310 | 0.813546 | 2.423244e-51 | -8.615850e-47 |
| Msa0535570 | Msa0650310 | 0.865300 | 6.526950e-65 | -8.615850e-47 |
| Msa0543740 | Msa0650310 | 0.832147 | 1.116085e-55 | -8.615850e-47 |
| Msa0554660 | Msa0650310 | 0.810709 | 1.007376e-50 | -8.615850e-47 |
| Msa0579530 | Msa0650310 | 0.802873 | 4.561905e-49 | -8.615850e-47 |
| Msa0591490 | Msa0650310 | 0.832399 | 9.663843e-56 | -8.615850e-47 |
| Msa0597800 | Msa0650310 | 0.800517 | 1.388624e-48 | -8.615850e-47 |
| Msa0599600 | Msa0650310 | 0.822297 | 2.554932e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650310 | MtrunA17_Chr4g0042551 | 97.354 | 189 | 5 | 0 | 1 | 189 | 31 | 219 | 2.89e-132 | 369 |
| Msa0650310 | MtrunA17_Chr5g0417761 | 65.775 | 187 | 63 | 1 | 1 | 187 | 1 | 186 | 7.60e-79 | 233 |
| Msa0650310 | MtrunA17_Chr7g0217691 | 56.216 | 185 | 79 | 1 | 2 | 186 | 3 | 185 | 4.09e-70 | 211 |
| Msa0650310 | MtrunA17_Chr1g0178181 | 42.408 | 191 | 104 | 1 | 2 | 186 | 4 | 194 | 5.15e-40 | 134 |
| Msa0650310 | MtrunA17_Chr2g0321671 | 42.614 | 176 | 101 | 0 | 12 | 187 | 45 | 220 | 5.83e-38 | 130 |
| Msa0650310 | MtrunA17_Chr1g0178191 | 43.386 | 189 | 102 | 1 | 3 | 186 | 5 | 193 | 1.13e-37 | 129 |
| Msa0650310 | MtrunA17_Chr1g0178161 | 41.618 | 173 | 101 | 0 | 14 | 186 | 23 | 195 | 2.78e-37 | 127 |
| Msa0650310 | MtrunA17_Chr4g0021111 | 36.025 | 161 | 90 | 4 | 22 | 180 | 1 | 150 | 1.68e-18 | 78.6 |
| Msa0650310 | MtrunA17_Chr7g0268681 | 30.519 | 154 | 102 | 3 | 27 | 177 | 27 | 178 | 2.22e-18 | 79.0 |
| Msa0650310 | MtrunA17_Chr7g0251531 | 32.099 | 162 | 105 | 3 | 10 | 169 | 11 | 169 | 9.47e-15 | 68.9 |
| Msa0650310 | MtrunA17_Chr4g0066721 | 27.273 | 143 | 95 | 2 | 30 | 164 | 34 | 175 | 2.11e-14 | 68.6 |
| Msa0650310 | MtrunA17_Chr8g0381001 | 30.818 | 159 | 95 | 4 | 33 | 180 | 30 | 184 | 2.65e-13 | 65.5 |
| Msa0650310 | MtrunA17_Chr4g0066711 | 32.121 | 165 | 96 | 8 | 27 | 184 | 26 | 181 | 1.38e-12 | 63.2 |
| Msa0650310 | MtrunA17_Chr5g0433491 | 33.621 | 116 | 74 | 2 | 66 | 180 | 68 | 181 | 2.91e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650310 | AT5G15290.1 | 56.548 | 168 | 70 | 2 | 1 | 167 | 1 | 166 | 8.41e-63 | 192 |
| Msa0650310 | AT1G14160.1 | 47.368 | 190 | 95 | 1 | 2 | 186 | 19 | 208 | 3.94e-60 | 186 |
| Msa0650310 | AT2G27370.1 | 48.503 | 167 | 86 | 0 | 21 | 187 | 54 | 220 | 3.39e-48 | 157 |
| Msa0650310 | AT2G36100.1 | 44.767 | 172 | 95 | 0 | 15 | 186 | 34 | 205 | 2.28e-42 | 141 |
| Msa0650310 | AT5G06200.1 | 50.602 | 166 | 82 | 0 | 21 | 186 | 36 | 201 | 1.26e-41 | 139 |
| Msa0650310 | AT3G11550.1 | 46.199 | 171 | 92 | 0 | 16 | 186 | 33 | 203 | 3.39e-38 | 130 |
| Msa0650310 | AT4G15620.1 | 30.645 | 186 | 109 | 6 | 10 | 184 | 13 | 189 | 6.53e-19 | 80.5 |
| Msa0650310 | AT4G15630.1 | 28.125 | 192 | 118 | 6 | 4 | 184 | 7 | 189 | 4.05e-17 | 75.9 |
| Msa0650310 | AT1G03700.1 | 32.895 | 152 | 87 | 3 | 32 | 180 | 12 | 151 | 6.15e-17 | 74.7 |
| Msa0650310 | AT4G03540.1 | 36.036 | 111 | 58 | 2 | 62 | 169 | 40 | 140 | 2.84e-14 | 67.8 |
| Msa0650310 | AT3G06390.1 | 28.467 | 137 | 93 | 2 | 29 | 160 | 37 | 173 | 2.04e-11 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTCTGCGGACGCATTTC+CGG | 0.160143 | 4_3:+57140518 | Msa0650310:CDS |
| ACTTGGAAGTGCATTGAGTA+TGG | 0.314679 | 4_3:+57139657 | Msa0650310:CDS |
| GTCTCCACTATTTCAATGCT+TGG | 0.317947 | 4_3:-57140618 | None:intergenic |
| ATGTTTGGTCTTCTTACATC+TGG | 0.318237 | 4_3:+57140410 | Msa0650310:CDS |
| GAAGAGAGGGCTTTCAATAA+TGG | 0.375320 | 4_3:+57139600 | Msa0650310:CDS |
| TGTCATTCTTCCACATTGTA+AGG | 0.389122 | 4_3:+57139906 | Msa0650310:CDS |
| GGACTATTTCAGTGAAAAGT+AGG | 0.406947 | 4_3:+57139927 | Msa0650310:CDS |
| CGCATTTCCGGTTCACTCGT+TGG | 0.423380 | 4_3:+57140530 | Msa0650310:CDS |
| ATGATACTTATTCTCATGTC+AGG | 0.427186 | 4_3:+57140578 | Msa0650310:CDS |
| GTAGCCACATACAATAGAAT+TGG | 0.428984 | 4_3:-57139864 | None:intergenic |
| GAACTTGTGTAGGTTATGTT+TGG | 0.432401 | 4_3:+57140395 | Msa0650310:intron |
| ATTGTTTATGTAGCTCACTA+TGG | 0.441275 | 4_3:+57140452 | Msa0650310:CDS |
| GGAGCATCATCCCAAAGAAA+AGG | 0.450818 | 4_3:+57139574 | Msa0650310:CDS |
| TCTCTTGGTCTTTCTTGATA+CGG | 0.450983 | 4_3:+57139952 | Msa0650310:CDS |
| ATGGAAATCCCAGTGCCAAT+TGG | 0.476221 | 4_3:+57140471 | Msa0650310:CDS |
| GAAAGAGCCAACGAGTGAAC+CGG | 0.477626 | 4_3:-57140537 | None:intergenic |
| AGTGAAAAGTAGGATTCTCT+TGG | 0.484716 | 4_3:+57139937 | Msa0650310:CDS |
| GAAAGGAAACCAATTGGCAC+TGG | 0.490083 | 4_3:-57140480 | None:intergenic |
| CTAACAAAACGTGTAGCAAA+AGG | 0.493085 | 4_3:-57139700 | None:intergenic |
| CGCAGAAGGAGTTGTATTGT+TGG | 0.495681 | 4_3:-57140505 | None:intergenic |
| TTGGCAGAAAGGAAACCAAT+TGG | 0.505370 | 4_3:-57140486 | None:intergenic |
| GAGAGCGGTGAAATTTCAAA+AGG | 0.513548 | 4_3:+57139553 | Msa0650310:CDS |
| GAGTTGTATTGTTGGCAGAA+AGG | 0.513691 | 4_3:-57140497 | None:intergenic |
| GAGCATCATCCCAAAGAAAA+GGG | 0.519493 | 4_3:+57139575 | Msa0650310:CDS |
| AACAATGGCTGCTGCTGCTG+AGG | 0.545248 | 4_3:-57140435 | None:intergenic |
| ACCGGAAATGCGTCCGCAGA+AGG | 0.551171 | 4_3:-57140519 | None:intergenic |
| TTTGCAGCTATAAGCACACT+TGG | 0.563238 | 4_3:+57139640 | Msa0650310:CDS |
| TTACAATGTGGAAGAATGAC+AGG | 0.568556 | 4_3:-57139904 | None:intergenic |
| CTTGGAAGTGCATTGAGTAT+GGG | 0.582334 | 4_3:+57139658 | Msa0650310:CDS |
| AAAGAAAAGGGATGAAGAGA+GGG | 0.589149 | 4_3:+57139587 | Msa0650310:CDS |
| ACTACCAATTCTATTGTATG+TGG | 0.592296 | 4_3:+57139860 | Msa0650310:CDS |
| AAAGGAAACCAATTGGCACT+GGG | 0.608159 | 4_3:-57140479 | None:intergenic |
| CAAAGAAAAGGGATGAAGAG+AGG | 0.610616 | 4_3:+57139586 | Msa0650310:CDS |
| CAACAATACAACTCCTTCTG+CGG | 0.614837 | 4_3:+57140506 | Msa0650310:CDS |
| CTGAAATAGTCCTTACAATG+TGG | 0.618479 | 4_3:-57139916 | None:intergenic |
| ATAGTGAGCTACATAAACAA+TGG | 0.652493 | 4_3:-57140450 | None:intergenic |
| AAGGTGAGTACAATTGAGAG+CGG | 0.725157 | 4_3:+57139538 | Msa0650310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATTTGATTAATTTC+AGG | + | chr4_3:57139828-57139847 | Msa0650310:intron | 15.0% |
| !! | TTATATATATGTTTGGTTAA+TGG | + | chr4_3:57140026-57140045 | Msa0650310:intron | 15.0% |
| !! | TATATATATGTTTGGTTAAT+GGG | + | chr4_3:57140027-57140046 | Msa0650310:intron | 15.0% |
| !! | ATTCATATTTGATTAATTTC+AGG | + | chr4_3:57139828-57139847 | Msa0650310:intron | 15.0% |
| !! | TTATATATATGTTTGGTTAA+TGG | + | chr4_3:57140026-57140045 | Msa0650310:intron | 15.0% |
| !! | TATATATATGTTTGGTTAAT+GGG | + | chr4_3:57140027-57140046 | Msa0650310:intron | 15.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | - | chr4_3:57139790-57139809 | None:intergenic | 20.0% |
| !! | TAGAAAATAAAAGAAGAAAC+AGG | - | chr4_3:57139984-57140003 | None:intergenic | 20.0% |
| !! | TCCAAAGTTATATATATGTT+TGG | + | chr4_3:57140019-57140038 | Msa0650310:intron | 20.0% |
| !! | ACCAAACATATATATAACTT+TGG | - | chr4_3:57140023-57140042 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | - | chr4_3:57140133-57140152 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | - | chr4_3:57140287-57140306 | None:intergenic | 20.0% |
| !! | AGTGTATGATATGTTAATTA+AGG | - | chr4_3:57139790-57139809 | None:intergenic | 20.0% |
| !! | TAGAAAATAAAAGAAGAAAC+AGG | - | chr4_3:57139984-57140003 | None:intergenic | 20.0% |
| !! | TCCAAAGTTATATATATGTT+TGG | + | chr4_3:57140019-57140038 | Msa0650310:intron | 20.0% |
| !! | ACCAAACATATATATAACTT+TGG | - | chr4_3:57140023-57140042 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTAAATGACTCT+CGG | - | chr4_3:57140133-57140152 | None:intergenic | 20.0% |
| !!! | CTTTAGTCTAATTTAAAACT+CGG | - | chr4_3:57140287-57140306 | None:intergenic | 20.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | - | chr4_3:57139751-57139770 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | - | chr4_3:57140084-57140103 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | - | chr4_3:57140169-57140188 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | - | chr4_3:57140183-57140202 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | - | chr4_3:57140262-57140281 | None:intergenic | 25.0% |
| ! | CTAAAATGTCAAGTTTATGT+AGG | - | chr4_3:57140342-57140361 | None:intergenic | 25.0% |
| ! | ATAGTGACTTACAAAAATGT+TGG | - | chr4_3:57139751-57139770 | None:intergenic | 25.0% |
| !! | AAATTTTCGTTACTACTTAC+TGG | - | chr4_3:57140084-57140103 | None:intergenic | 25.0% |
| !! | TCTATAAGGTATCAGTTTAA+TGG | - | chr4_3:57140169-57140188 | None:intergenic | 25.0% |
| ! | AATTTATGTGCAAGTCTATA+AGG | - | chr4_3:57140183-57140202 | None:intergenic | 25.0% |
| ! | ACAAATAGCAGGAAAAAAAA+GGG | - | chr4_3:57140262-57140281 | None:intergenic | 25.0% |
| ! | CTAAAATGTCAAGTTTATGT+AGG | - | chr4_3:57140342-57140361 | None:intergenic | 25.0% |
| TGACTTACAAAAATGTTGGA+AGG | - | chr4_3:57139747-57139766 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | + | chr4_3:57139860-57139879 | Msa0650310:CDS | 30.0% | |
| !! | TATGTTTGGTTAATGGGTTA+AGG | + | chr4_3:57140033-57140052 | Msa0650310:intron | 30.0% |
| !! | ATGTTTGGTTAATGGGTTAA+GGG | + | chr4_3:57140034-57140053 | Msa0650310:intron | 30.0% |
| GTTTAACGACTATGTACTAA+CGG | - | chr4_3:57140240-57140259 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | - | chr4_3:57140263-57140282 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGT+AGG | + | chr4_3:57140385-57140404 | Msa0650310:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | - | chr4_3:57140453-57140472 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | + | chr4_3:57140452-57140471 | Msa0650310:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | + | chr4_3:57140578-57140597 | Msa0650310:CDS | 30.0% | |
| TGACTTACAAAAATGTTGGA+AGG | - | chr4_3:57139747-57139766 | None:intergenic | 30.0% | |
| ACTACCAATTCTATTGTATG+TGG | + | chr4_3:57139860-57139879 | Msa0650310:CDS | 30.0% | |
| !! | TATGTTTGGTTAATGGGTTA+AGG | + | chr4_3:57140033-57140052 | Msa0650310:intron | 30.0% |
| !! | ATGTTTGGTTAATGGGTTAA+GGG | + | chr4_3:57140034-57140053 | Msa0650310:intron | 30.0% |
| GTTTAACGACTATGTACTAA+CGG | - | chr4_3:57140240-57140259 | None:intergenic | 30.0% | |
| GACAAATAGCAGGAAAAAAA+AGG | - | chr4_3:57140263-57140282 | None:intergenic | 30.0% | |
| GATTGAAATTGAACTTGTGT+AGG | + | chr4_3:57140385-57140404 | Msa0650310:intron | 30.0% | |
| ATAGTGAGCTACATAAACAA+TGG | - | chr4_3:57140453-57140472 | None:intergenic | 30.0% | |
| ATTGTTTATGTAGCTCACTA+TGG | + | chr4_3:57140452-57140471 | Msa0650310:CDS | 30.0% | |
| ATGATACTTATTCTCATGTC+AGG | + | chr4_3:57140578-57140597 | Msa0650310:CDS | 30.0% | |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | - | chr4_3:57139587-57139606 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | + | chr4_3:57139587-57139606 | Msa0650310:CDS | 35.0% | |
| CTAACAAAACGTGTAGCAAA+AGG | - | chr4_3:57139703-57139722 | None:intergenic | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | - | chr4_3:57139867-57139886 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | - | chr4_3:57139907-57139926 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | + | chr4_3:57139906-57139925 | Msa0650310:CDS | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | - | chr4_3:57139919-57139938 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | + | chr4_3:57139927-57139946 | Msa0650310:CDS | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | + | chr4_3:57139937-57139956 | Msa0650310:CDS | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | + | chr4_3:57139952-57139971 | Msa0650310:CDS | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | + | chr4_3:57140035-57140054 | Msa0650310:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | - | chr4_3:57140315-57140334 | None:intergenic | 35.0% | |
| GAACTTGTGTAGGTTATGTT+TGG | + | chr4_3:57140395-57140414 | Msa0650310:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | + | chr4_3:57140410-57140429 | Msa0650310:CDS | 35.0% |
| ! | TCTCTTCATCCCTTTTCTTT+GGG | - | chr4_3:57139587-57139606 | None:intergenic | 35.0% |
| AAAGAAAAGGGATGAAGAGA+GGG | + | chr4_3:57139587-57139606 | Msa0650310:CDS | 35.0% | |
| CTAACAAAACGTGTAGCAAA+AGG | - | chr4_3:57139703-57139722 | None:intergenic | 35.0% | |
| GTAGCCACATACAATAGAAT+TGG | - | chr4_3:57139867-57139886 | None:intergenic | 35.0% | |
| TTACAATGTGGAAGAATGAC+AGG | - | chr4_3:57139907-57139926 | None:intergenic | 35.0% | |
| TGTCATTCTTCCACATTGTA+AGG | + | chr4_3:57139906-57139925 | Msa0650310:CDS | 35.0% | |
| CTGAAATAGTCCTTACAATG+TGG | - | chr4_3:57139919-57139938 | None:intergenic | 35.0% | |
| GGACTATTTCAGTGAAAAGT+AGG | + | chr4_3:57139927-57139946 | Msa0650310:CDS | 35.0% | |
| AGTGAAAAGTAGGATTCTCT+TGG | + | chr4_3:57139937-57139956 | Msa0650310:CDS | 35.0% | |
| ! | TCTCTTGGTCTTTCTTGATA+CGG | + | chr4_3:57139952-57139971 | Msa0650310:CDS | 35.0% |
| !! | TGTTTGGTTAATGGGTTAAG+GGG | + | chr4_3:57140035-57140054 | Msa0650310:intron | 35.0% |
| TTTCCAAAATTCCACCTCTA+AGG | - | chr4_3:57140315-57140334 | None:intergenic | 35.0% | |
| GAACTTGTGTAGGTTATGTT+TGG | + | chr4_3:57140395-57140414 | Msa0650310:intron | 35.0% | |
| ! | ATGTTTGGTCTTCTTACATC+TGG | + | chr4_3:57140410-57140429 | Msa0650310:CDS | 35.0% |
| AAGGTGAGTACAATTGAGAG+CGG | + | chr4_3:57139538-57139557 | Msa0650310:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | + | chr4_3:57139553-57139572 | Msa0650310:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | + | chr4_3:57139575-57139594 | Msa0650310:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | - | chr4_3:57139588-57139607 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | + | chr4_3:57139586-57139605 | Msa0650310:CDS | 40.0% | |
| GAAGAGAGGGCTTTCAATAA+TGG | + | chr4_3:57139600-57139619 | Msa0650310:CDS | 40.0% | |
| TTTGCAGCTATAAGCACACT+TGG | + | chr4_3:57139640-57139659 | Msa0650310:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | + | chr4_3:57139657-57139676 | Msa0650310:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | + | chr4_3:57139658-57139677 | Msa0650310:CDS | 40.0% |
| ! | AAAACTCGGTGACAAATAGC+AGG | - | chr4_3:57140273-57140292 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | + | chr4_3:57140298-57140317 | Msa0650310:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | + | chr4_3:57140309-57140328 | Msa0650310:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | - | chr4_3:57140482-57140501 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | - | chr4_3:57140489-57140508 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | - | chr4_3:57140500-57140519 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | + | chr4_3:57140506-57140525 | Msa0650310:CDS | 40.0% | |
| AAGGTGAGTACAATTGAGAG+CGG | + | chr4_3:57139538-57139557 | Msa0650310:CDS | 40.0% | |
| GAGAGCGGTGAAATTTCAAA+AGG | + | chr4_3:57139553-57139572 | Msa0650310:CDS | 40.0% | |
| GAGCATCATCCCAAAGAAAA+GGG | + | chr4_3:57139575-57139594 | Msa0650310:CDS | 40.0% | |
| ! | CTCTCTTCATCCCTTTTCTT+TGG | - | chr4_3:57139588-57139607 | None:intergenic | 40.0% |
| CAAAGAAAAGGGATGAAGAG+AGG | + | chr4_3:57139586-57139605 | Msa0650310:CDS | 40.0% | |
| GAAGAGAGGGCTTTCAATAA+TGG | + | chr4_3:57139600-57139619 | Msa0650310:CDS | 40.0% | |
| TTTGCAGCTATAAGCACACT+TGG | + | chr4_3:57139640-57139659 | Msa0650310:CDS | 40.0% | |
| ! | ACTTGGAAGTGCATTGAGTA+TGG | + | chr4_3:57139657-57139676 | Msa0650310:CDS | 40.0% |
| ! | CTTGGAAGTGCATTGAGTAT+GGG | + | chr4_3:57139658-57139677 | Msa0650310:CDS | 40.0% |
| ! | AAAACTCGGTGACAAATAGC+AGG | - | chr4_3:57140273-57140292 | None:intergenic | 40.0% |
| AGACTAAAGCTAGTCCTTAG+AGG | + | chr4_3:57140298-57140317 | Msa0650310:intron | 40.0% | |
| ! | AGTCCTTAGAGGTGGAATTT+TGG | + | chr4_3:57140309-57140328 | Msa0650310:intron | 40.0% |
| AAAGGAAACCAATTGGCACT+GGG | - | chr4_3:57140482-57140501 | None:intergenic | 40.0% | |
| TTGGCAGAAAGGAAACCAAT+TGG | - | chr4_3:57140489-57140508 | None:intergenic | 40.0% | |
| GAGTTGTATTGTTGGCAGAA+AGG | - | chr4_3:57140500-57140519 | None:intergenic | 40.0% | |
| CAACAATACAACTCCTTCTG+CGG | + | chr4_3:57140506-57140525 | Msa0650310:CDS | 40.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | + | chr4_3:57139574-57139593 | Msa0650310:CDS | 45.0% |
| CTAAAGCTAGTCCTTAGAGG+TGG | + | chr4_3:57140301-57140320 | Msa0650310:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | + | chr4_3:57140471-57140490 | Msa0650310:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | - | chr4_3:57140483-57140502 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | - | chr4_3:57140508-57140527 | None:intergenic | 45.0% | |
| ! | GGAGCATCATCCCAAAGAAA+AGG | + | chr4_3:57139574-57139593 | Msa0650310:CDS | 45.0% |
| CTAAAGCTAGTCCTTAGAGG+TGG | + | chr4_3:57140301-57140320 | Msa0650310:intron | 45.0% | |
| ATGGAAATCCCAGTGCCAAT+TGG | + | chr4_3:57140471-57140490 | Msa0650310:CDS | 45.0% | |
| GAAAGGAAACCAATTGGCAC+TGG | - | chr4_3:57140483-57140502 | None:intergenic | 45.0% | |
| CGCAGAAGGAGTTGTATTGT+TGG | - | chr4_3:57140508-57140527 | None:intergenic | 45.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | - | chr4_3:57140540-57140559 | None:intergenic | 50.0% | |
| GAAAGAGCCAACGAGTGAAC+CGG | - | chr4_3:57140540-57140559 | None:intergenic | 50.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | - | chr4_3:57140438-57140457 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | + | chr4_3:57140518-57140537 | Msa0650310:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | + | chr4_3:57140530-57140549 | Msa0650310:CDS | 55.0% | |
| AACAATGGCTGCTGCTGCTG+AGG | - | chr4_3:57140438-57140457 | None:intergenic | 55.0% | |
| TCCTTCTGCGGACGCATTTC+CGG | + | chr4_3:57140518-57140537 | Msa0650310:CDS | 55.0% | |
| CGCATTTCCGGTTCACTCGT+TGG | + | chr4_3:57140530-57140549 | Msa0650310:CDS | 55.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | - | chr4_3:57140522-57140541 | None:intergenic | 60.0% | |
| ACCGGAAATGCGTCCGCAGA+AGG | - | chr4_3:57140522-57140541 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 57139535 | 57140628 | 57139535 | ID=Msa0650310;Name=Msa0650310 |
| chr4_3 | mRNA | 57139535 | 57140628 | 57139535 | ID=Msa0650310-mRNA-1;Parent=Msa0650310;Name=Msa0650310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|189 |
| chr4_3 | exon | 57139535 | 57139758 | 57139535 | ID=Msa0650310-mRNA-1:exon:14997;Parent=Msa0650310-mRNA-1 |
| chr4_3 | exon | 57139850 | 57139973 | 57139850 | ID=Msa0650310-mRNA-1:exon:14998;Parent=Msa0650310-mRNA-1 |
| chr4_3 | exon | 57140407 | 57140628 | 57140407 | ID=Msa0650310-mRNA-1:exon:14999;Parent=Msa0650310-mRNA-1 |
| chr4_3 | CDS | 57139535 | 57139758 | 57139535 | ID=Msa0650310-mRNA-1:cds;Parent=Msa0650310-mRNA-1 |
| chr4_3 | CDS | 57139850 | 57139973 | 57139850 | ID=Msa0650310-mRNA-1:cds;Parent=Msa0650310-mRNA-1 |
| chr4_3 | CDS | 57140407 | 57140628 | 57140407 | ID=Msa0650310-mRNA-1:cds;Parent=Msa0650310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
